AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459770 MtrunA17_Chr3g0108321 98.266 346 6 0 1 346 1 346 0.0 693
Msa0459770 MtrunA17_Chr7g0262801 50.416 361 172 3 41 395 67 426 1.19e-127 375
Msa0459770 MtrunA17_Chr1g0182711 50.693 361 171 3 41 395 68 427 3.98e-127 374
Msa0459770 MtrunA17_Chr4g0050561 46.866 335 174 2 73 403 70 404 6.15e-102 309
Msa0459770 MtrunA17_Chr1g0200081 56.809 257 107 2 140 393 156 411 1.93e-101 308
Msa0459770 MtrunA17_Chr8g0345461 54.074 270 121 1 127 393 133 402 2.14e-101 308
Msa0459770 MtrunA17_Chr1g0192151 38.386 409 228 4 27 411 14 422 2.05e-100 305
Msa0459770 MtrunA17_Chr4g0014731 37.701 435 235 6 1 411 1 423 9.58e-100 303
Msa0459770 MtrunA17_Chr3g0141901 43.305 351 191 3 55 398 29 378 6.80e-98 298
Msa0459770 MtrunA17_Chr3g0145011 43.429 350 190 4 60 403 41 388 1.32e-96 295
Msa0459770 MtrunA17_Chr2g0327121 40.210 286 154 5 115 395 442 715 7.16e-59 205
Msa0459770 MtrunA17_Chr2g0327121 43.590 234 126 2 158 388 206 436 1.58e-52 187
Msa0459770 MtrunA17_Chr7g0264521 40.559 286 153 5 115 395 441 714 1.63e-58 204
Msa0459770 MtrunA17_Chr7g0264521 44.017 234 125 2 158 388 205 435 1.15e-55 196
Msa0459770 MtrunA17_Chr1g0180791 39.446 289 158 5 115 398 440 716 1.05e-57 202
Msa0459770 MtrunA17_Chr1g0180791 44.017 234 125 2 158 388 204 434 7.77e-56 197
Msa0459770 MtrunA17_Chr4g0052411 42.678 239 133 2 159 394 229 466 1.21e-56 197
Msa0459770 MtrunA17_Chr7g0255651 37.248 298 171 4 95 383 219 509 2.76e-56 194
Msa0459770 MtrunA17_Chr7g0255651 27.602 221 139 4 196 410 50 255 3.71e-18 86.7
Msa0459770 MtrunA17_Chr2g0297281 42.259 239 134 2 159 394 286 523 3.85e-54 191
Msa0459770 MtrunA17_Chr7g0217421 41.004 239 137 2 159 394 39 276 3.24e-53 182
Msa0459770 MtrunA17_Chr5g0429571 39.871 311 159 9 96 393 257 552 3.61e-53 189
Msa0459770 MtrunA17_Chr8g0388371 42.400 250 130 5 159 396 404 651 5.96e-52 186
Msa0459770 MtrunA17_Chr3g0104211 44.444 243 124 6 159 393 304 543 6.52e-50 180
Msa0459770 MtrunA17_Chr4g0031821 38.132 257 152 4 144 394 305 560 1.13e-48 177
Msa0459770 MtrunA17_Chr3g0094871 39.834 241 139 3 159 394 11 250 3.50e-48 170
Msa0459770 MtrunA17_Chr7g0248361 37.879 264 157 4 137 394 170 432 1.46e-47 172
Msa0459770 MtrunA17_Chr6g0476861 40.496 242 137 4 159 394 197 437 3.73e-47 171
Msa0459770 MtrunA17_Chr7g0260601 40.486 247 136 5 156 394 237 480 4.15e-47 171
Msa0459770 MtrunA17_Chr4g0062081 93.671 79 4 1 162 239 10 88 4.34e-47 156
Msa0459770 MtrunA17_Chr7g0255691 39.056 233 139 1 155 384 282 514 1.09e-46 168
Msa0459770 MtrunA17_Chr7g0255691 31.140 228 148 4 164 384 22 247 1.04e-23 103
Msa0459770 MtrunA17_Chr7g0255641 38.627 233 139 2 155 384 654 885 1.80e-46 171
Msa0459770 MtrunA17_Chr7g0255641 39.674 184 100 5 198 376 432 609 6.16e-31 125
Msa0459770 MtrunA17_Chr7g0255721 39.056 233 138 2 155 384 681 912 3.32e-46 170
Msa0459770 MtrunA17_Chr7g0255721 33.929 224 139 3 164 383 391 609 5.92e-32 128
Msa0459770 MtrunA17_Chr3g0143721 39.738 229 134 2 159 384 249 476 3.34e-46 169
Msa0459770 MtrunA17_Chr2g0331161 40.260 231 134 2 158 385 414 643 1.13e-45 168
Msa0459770 MtrunA17_Chr7g0255901 37.008 254 152 6 136 383 616 867 6.05e-44 164
Msa0459770 MtrunA17_Chr8g0362771 37.083 240 145 3 158 394 236 472 1.57e-43 161
Msa0459770 MtrunA17_Chr6g0456351 38.075 239 139 4 159 392 317 551 2.64e-43 159
Msa0459770 MtrunA17_Chr1g0158881 38.961 231 129 4 155 380 325 548 2.95e-43 161
Msa0459770 MtrunA17_Chr2g0327231 41.463 205 111 3 115 319 311 506 6.37e-43 157
Msa0459770 MtrunA17_Chr2g0327231 48.352 91 43 1 158 248 152 238 2.68e-20 92.8
Msa0459770 MtrunA17_Chr3g0129971 39.777 269 140 9 128 384 271 529 1.37e-42 159
Msa0459770 MtrunA17_Chr3g0108311 100.000 67 0 0 346 412 1 67 2.64e-42 143
Msa0459770 MtrunA17_Chr2g0277831 38.462 234 134 5 154 381 528 757 5.22e-42 157
Msa0459770 MtrunA17_Chr2g0277831 37.004 227 138 3 161 383 245 470 3.50e-36 140
Msa0459770 MtrunA17_Chr2g0321241 38.075 239 132 7 155 385 128 358 1.38e-40 149
Msa0459770 MtrunA17_Chr4g0052271 34.766 256 152 6 139 383 92 343 2.61e-40 148
Msa0459770 MtrunA17_Chr4g0026631 36.555 238 137 6 155 385 123 353 5.67e-40 147
Msa0459770 MtrunA17_Chr3g0135721 37.395 238 140 4 161 394 226 458 1.69e-39 150
Msa0459770 MtrunA17_Chr3g0086401 43.503 177 97 1 157 333 383 556 1.23e-38 147
Msa0459770 MtrunA17_Chr3g0086401 35.808 229 120 9 161 372 94 312 1.87e-27 114
Msa0459770 MtrunA17_Chr7g0246111 37.768 233 133 6 157 383 210 436 1.81e-38 145
Msa0459770 MtrunA17_Chr8g0387641 36.797 231 137 5 158 383 520 746 2.88e-38 147
Msa0459770 MtrunA17_Chr6g0462581 36.681 229 137 4 159 383 500 724 5.42e-38 146
Msa0459770 MtrunA17_Chr4g0004121 35.294 238 138 5 157 383 240 472 9.40e-38 143
Msa0459770 MtrunA17_Chr3g0127431 34.483 261 151 7 158 410 83 331 4.10e-37 139
Msa0459770 MtrunA17_Chr3g0127401 36.910 233 134 6 158 383 80 306 5.15e-37 138
Msa0459770 MtrunA17_Chr3g0135761 35.685 241 146 4 158 394 221 456 6.09e-37 142
Msa0459770 MtrunA17_Chr2g0316851 35.955 267 150 7 129 384 569 825 7.91e-37 143
Msa0459770 MtrunA17_Chr1g0202371 36.522 230 136 5 159 383 397 621 1.03e-36 142
Msa0459770 MtrunA17_Chr4g0033451 36.325 234 137 4 159 383 380 610 1.03e-36 142
Msa0459770 MtrunA17_Chr4g0043381 36.000 225 138 3 161 382 839 1060 1.32e-36 142
Msa0459770 MtrunA17_Chr3g0086411 40.678 177 102 1 157 333 213 386 1.73e-36 139
Msa0459770 MtrunA17_Chr3g0086411 36.242 149 80 4 247 383 7 152 8.43e-14 73.2
Msa0459770 MtrunA17_Chr1g0195731 38.554 249 137 8 159 401 934 1172 1.78e-36 142
Msa0459770 MtrunA17_Chr5g0432631 35.223 247 153 3 151 394 221 463 2.30e-36 141
Msa0459770 MtrunA17_Chr5g0397121 36.087 230 138 4 159 383 513 738 2.49e-36 141
Msa0459770 MtrunA17_Chr1g0195741 38.528 231 132 6 159 383 938 1164 3.25e-36 141
Msa0459770 MtrunA17_Chr3g0116131 40.179 224 124 6 159 376 902 1121 7.00e-36 140
Msa0459770 MtrunA17_Chr1g0204031 36.797 231 137 5 158 383 556 782 2.17e-35 138
Msa0459770 MtrunA17_Chr1g0202381 37.611 226 128 6 159 377 468 687 4.20e-35 137
Msa0459770 MtrunA17_Chr3g0135781 41.463 164 92 2 158 321 54 213 3.34e-34 126
Msa0459770 MtrunA17_Chr4g0038101 35.498 231 139 6 159 383 721 947 4.20e-33 132
Msa0459770 MtrunA17_Chr6g0459561 38.298 188 106 6 157 341 380 560 5.96e-33 130
Msa0459770 MtrunA17_Chr6g0459541 39.560 182 101 6 155 333 38 213 7.96e-32 124
Msa0459770 MtrunA17_Chr4g0047411 29.965 287 182 7 114 383 131 415 1.87e-30 124
Msa0459770 MtrunA17_Chr2g0289231 34.061 229 135 5 158 376 296 518 1.74e-29 120
Msa0459770 MtrunA17_Chr5g0432641 32.773 238 149 4 162 394 194 425 1.91e-29 120
Msa0459770 MtrunA17_Chr6g0459551 32.692 260 142 8 81 333 35 268 1.10e-28 116
Msa0459770 MtrunA17_Chr8g0357301 34.615 208 119 4 197 392 507 709 1.11e-27 115
Msa0459770 MtrunA17_Chr1g0168321 29.368 269 146 5 132 394 137 367 1.99e-26 110
Msa0459770 MtrunA17_Chr1g0190401 31.140 228 146 7 151 374 669 889 2.29e-23 103
Msa0459770 MtrunA17_Chr5g0432391 32.298 161 103 2 237 394 81 238 1.94e-17 84.0
Msa0459770 MtrunA17_Chr5g0404651 31.053 190 110 6 171 351 226 403 3.73e-15 77.0
Msa0459770 MtrunA17_Chr6g0459531 27.350 234 130 8 157 383 65 265 4.80e-15 75.5
Msa0459770 MtrunA17_Chr5g0404291 35.664 143 78 6 195 333 387 519 1.55e-14 75.5
Msa0459770 MtrunA17_Chr8g0372701 32.530 166 95 6 171 329 234 389 4.42e-14 73.9
Msa0459770 MtrunA17_Chr2g0315911 28.485 165 105 4 171 330 216 372 1.46e-13 72.0
Msa0459770 MtrunA17_Chr2g0315971 26.840 231 137 10 124 330 141 363 3.07e-13 71.6
Msa0459770 MtrunA17_Chr2g0315971 27.083 240 145 10 127 354 448 669 3.30e-13 71.6
Msa0459770 MtrunA17_Chr2g0315991 30.065 153 90 5 186 331 224 366 9.37e-13 69.7
Msa0459770 MtrunA17_Chr2g0316041 27.624 181 111 6 186 354 167 339 4.90e-12 67.4
Msa0459770 MtrunA17_Chr6g0452361 32.143 168 97 6 170 329 5 163 2.52e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459770 AT5G58290.1 91.525 413 20 3 4 412 7 408 0.0 763
Msa0459770 AT4G29040.1 49.479 384 183 5 18 395 46 424 7.13e-128 376
Msa0459770 AT2G20140.1 49.219 384 184 5 18 395 46 424 2.28e-127 375
Msa0459770 AT5G19990.2 46.903 339 175 3 73 407 14 351 1.89e-102 308
Msa0459770 AT5G19990.1 44.474 371 201 3 41 407 40 409 2.52e-102 310
Msa0459770 AT5G19990.3 44.474 371 201 3 41 407 40 409 2.52e-102 310
Msa0459770 AT5G20000.1 45.013 371 196 5 41 407 43 409 2.74e-102 310
Msa0459770 AT1G53750.1 54.074 270 121 1 127 393 133 402 3.68e-101 307
Msa0459770 AT1G09100.1 38.386 409 228 4 27 411 14 422 4.95e-100 304
Msa0459770 AT3G05530.1 38.386 409 228 4 27 411 15 423 8.86e-100 304
Msa0459770 AT1G45000.1 43.590 351 190 3 55 398 29 378 3.47e-98 299
Msa0459770 AT5G43010.1 43.590 351 190 3 55 398 29 378 4.91e-98 298
Msa0459770 AT1G53780.1 54.086 257 115 1 140 393 318 574 4.61e-93 292
Msa0459770 AT1G53780.4 54.086 257 115 1 140 393 318 574 4.61e-93 292
Msa0459770 AT1G53780.3 54.086 257 115 1 140 393 317 573 5.16e-93 292
Msa0459770 AT1G53780.2 54.086 257 115 1 140 393 339 595 7.14e-93 292
Msa0459770 AT1G45000.2 42.510 247 139 1 55 298 29 275 1.10e-66 216
Msa0459770 AT3G53230.1 42.213 244 134 2 155 395 474 713 1.65e-58 204
Msa0459770 AT3G53230.1 44.017 234 125 2 158 388 204 434 3.93e-55 195
Msa0459770 AT5G03340.1 39.446 289 158 5 115 398 439 715 2.35e-57 201
Msa0459770 AT5G03340.1 44.017 234 125 2 158 388 203 433 3.18e-55 195
Msa0459770 AT3G09840.1 44.872 234 123 3 158 388 203 433 7.72e-56 197
Msa0459770 AT3G09840.1 39.310 290 158 6 115 398 439 716 7.88e-56 197
Msa0459770 AT2G30950.1 41.841 239 135 2 159 394 224 461 2.86e-54 191
Msa0459770 AT2G30950.2 41.841 239 135 2 159 394 224 461 2.86e-54 191
Msa0459770 AT2G30950.3 41.841 239 135 2 159 394 224 461 2.86e-54 191
Msa0459770 AT2G30950.4 41.841 239 135 2 159 394 228 465 3.06e-54 191
Msa0459770 AT1G06430.1 41.423 239 136 2 159 394 217 454 8.79e-54 190
Msa0459770 AT1G06430.3 41.423 239 136 2 159 394 217 454 8.79e-54 190
Msa0459770 AT1G06430.2 41.423 239 136 2 159 394 217 454 8.79e-54 190
Msa0459770 AT3G47060.1 44.813 241 126 4 159 393 322 561 2.65e-53 190
Msa0459770 AT5G58870.1 44.033 243 125 5 159 393 326 565 1.54e-51 185
Msa0459770 AT4G23940.1 42.742 248 128 5 159 394 427 672 7.33e-51 184
Msa0459770 AT3G56690.1 39.914 233 136 2 155 384 717 948 1.59e-49 180
Msa0459770 AT3G56690.1 40.404 198 111 2 191 384 413 607 2.43e-41 156
Msa0459770 AT5G15250.1 40.435 230 133 2 159 385 221 449 4.33e-48 174
Msa0459770 AT2G03670.1 39.744 234 137 2 155 384 279 512 1.56e-47 171
Msa0459770 AT2G03670.1 32.780 241 152 4 163 394 23 262 2.59e-31 126
Msa0459770 AT1G07510.1 38.132 257 152 4 144 394 309 564 2.28e-47 173
Msa0459770 AT5G42270.1 40.351 228 132 2 159 383 247 473 7.10e-47 171
Msa0459770 AT2G29080.1 39.370 254 148 3 146 394 306 558 8.24e-47 172
Msa0459770 AT1G50250.1 39.474 228 134 2 159 383 259 485 1.56e-45 167
Msa0459770 AT5G15250.2 36.759 253 133 3 159 385 221 472 1.17e-44 162
Msa0459770 AT3G16290.1 38.961 231 137 2 158 385 406 635 4.00e-44 164
Msa0459770 AT5G53170.1 39.394 231 128 4 155 380 355 578 4.46e-44 164
Msa0459770 AT1G03000.1 37.759 241 142 6 149 383 645 883 5.22e-44 164
Msa0459770 AT3G02450.1 38.866 247 138 4 153 392 325 565 4.94e-43 159
Msa0459770 AT5G64580.1 39.600 250 137 6 146 384 300 546 5.23e-42 158
Msa0459770 AT2G45500.4 37.179 234 133 6 157 383 78 304 6.67e-42 151
Msa0459770 AT2G45500.3 37.179 234 133 6 157 383 78 304 6.67e-42 151
Msa0459770 AT2G45500.1 37.179 234 133 6 157 383 215 441 6.48e-41 152
Msa0459770 AT2G45500.2 37.179 234 133 6 157 383 211 437 6.61e-41 151
Msa0459770 AT2G45500.5 37.179 234 133 6 157 383 221 447 7.24e-41 151
Msa0459770 AT5G08470.3 38.298 235 139 3 152 383 825 1056 8.19e-41 155
Msa0459770 AT5G08470.1 38.298 235 139 3 152 383 834 1065 8.95e-41 155
Msa0459770 AT1G80350.1 36.134 238 136 5 157 383 234 466 6.95e-40 149
Msa0459770 AT2G26140.1 36.975 238 141 4 161 394 226 458 3.90e-39 149
Msa0459770 AT2G34560.1 35.593 236 145 5 157 388 98 330 8.10e-39 144
Msa0459770 AT2G34560.2 35.593 236 145 5 157 388 107 339 9.35e-39 144
Msa0459770 AT3G01610.2 38.865 229 132 5 157 381 523 747 1.38e-38 148
Msa0459770 AT3G01610.2 33.460 263 149 5 143 383 206 464 1.70e-33 133
Msa0459770 AT3G01610.1 38.865 229 132 5 157 381 523 747 1.50e-38 148
Msa0459770 AT3G01610.1 33.460 263 149 5 143 383 206 464 1.99e-33 133
Msa0459770 AT1G05910.1 35.391 243 129 5 158 383 377 608 4.72e-38 147
Msa0459770 AT4G28000.3 35.743 249 152 4 159 403 517 761 1.34e-37 145
Msa0459770 AT4G28000.1 35.743 249 152 4 159 403 515 759 1.36e-37 145
Msa0459770 AT4G28000.2 35.743 249 152 4 159 403 517 761 1.45e-37 145
Msa0459770 AT5G53540.1 36.502 263 147 8 158 412 83 333 1.45e-37 140
Msa0459770 AT2G27600.1 35.983 239 137 7 155 385 125 355 1.97e-37 141
Msa0459770 AT4G27680.1 37.447 235 130 7 158 383 80 306 1.30e-36 138
Msa0459770 AT1G02890.1 37.402 254 137 8 136 383 930 1167 7.88e-36 140
Msa0459770 AT1G64110.5 35.745 235 142 5 154 383 511 741 8.23e-36 140
Msa0459770 AT1G64110.3 35.745 235 142 5 154 383 511 741 8.23e-36 140
Msa0459770 AT1G64110.1 35.745 235 142 5 154 383 508 738 8.84e-36 140
Msa0459770 AT1G64110.2 35.745 235 142 5 154 383 513 743 8.90e-36 140
Msa0459770 AT1G64110.4 35.745 235 142 5 154 383 513 743 8.90e-36 140
Msa0459770 AT4G02480.1 37.402 254 137 8 136 383 949 1186 9.29e-36 140
Msa0459770 AT3G15120.1 35.391 243 143 5 152 384 709 947 9.48e-36 140
Msa0459770 AT3G15120.2 35.391 243 143 5 152 384 719 957 1.08e-35 140
Msa0459770 AT5G52882.1 36.245 229 138 4 159 383 514 738 3.55e-35 138
Msa0459770 AT4G24860.4 36.910 233 135 6 158 383 789 1016 9.68e-35 137
Msa0459770 AT4G24860.1 36.910 233 135 6 158 383 816 1043 9.87e-35 137
Msa0459770 AT4G24860.2 36.910 233 135 6 158 383 812 1039 1.05e-34 137
Msa0459770 AT4G24860.3 36.910 233 135 6 158 383 814 1041 1.11e-34 137
Msa0459770 AT3G27120.1 32.051 234 146 6 157 383 398 625 4.23e-32 129
Msa0459770 AT2G03670.2 32.780 241 152 4 163 394 23 262 4.30e-32 126
Msa0459770 AT2G03670.2 41.096 146 85 1 155 299 279 424 7.18e-29 117
Msa0459770 AT4G04180.2 36.404 228 131 5 158 376 310 532 8.76e-31 124
Msa0459770 AT4G04180.1 36.404 228 131 5 158 376 315 537 1.02e-30 124
Msa0459770 AT1G79560.2 37.619 210 110 5 197 392 527 729 2.66e-30 124
Msa0459770 AT1G79560.3 37.619 210 110 5 197 392 527 729 2.88e-30 124
Msa0459770 AT1G79560.1 37.619 210 110 5 197 392 527 729 3.58e-30 123
Msa0459770 AT1G50140.2 31.301 246 154 6 159 398 689 925 7.02e-30 122
Msa0459770 AT1G50140.5 31.301 246 154 6 159 398 689 925 7.02e-30 122
Msa0459770 AT1G50140.3 31.301 246 154 6 159 398 711 947 7.03e-30 122
Msa0459770 AT1G50140.1 31.301 246 154 6 159 398 711 947 7.03e-30 122
Msa0459770 AT1G50140.4 31.301 246 154 6 159 398 711 947 7.03e-30 122
Msa0459770 AT3G19740.1 32.035 231 147 5 159 383 701 927 4.01e-29 120
Msa0459770 AT4G04910.1 34.286 210 121 5 190 383 244 452 2.04e-28 118
Msa0459770 AT1G62130.1 29.630 351 211 12 40 376 629 957 1.29e-25 110
Msa0459770 AT1G62130.2 29.630 351 211 12 40 376 622 950 1.44e-25 110
Msa0459770 AT5G08470.2 36.943 157 96 1 152 308 834 987 8.79e-24 104
Msa0459770 AT3G04340.1 31.132 212 139 6 151 357 773 982 4.52e-21 96.7
Msa0459770 AT1G02890.2 31.890 254 123 9 136 383 930 1139 5.08e-20 93.2
Msa0459770 AT2G18193.1 34.356 163 94 6 171 328 218 372 3.25e-15 77.8
Msa0459770 AT2G18330.1 33.793 145 88 5 195 338 384 521 3.12e-14 75.1
Msa0459770 AT4G36580.1 35.000 140 83 5 195 333 381 513 5.90e-14 74.3
Msa0459770 AT5G17740.1 29.268 205 126 6 160 353 209 405 6.61e-14 73.9
Msa0459770 AT3G28600.1 30.682 176 98 5 170 329 212 379 1.58e-13 72.4
Msa0459770 AT3G28600.2 30.682 176 98 5 170 329 173 340 1.68e-13 72.4
Msa0459770 AT2G18190.1 31.928 166 97 4 171 328 219 376 4.20e-13 71.2
Msa0459770 AT5G17760.1 28.571 203 121 5 160 350 217 407 9.34e-13 70.1
Msa0459770 AT1G43910.1 31.481 162 84 5 186 328 229 382 1.65e-12 69.3
Msa0459770 AT4G24710.4 30.769 143 79 4 187 309 200 342 3.20e-12 67.8
Msa0459770 AT4G24710.2 30.769 143 79 4 187 309 200 342 3.20e-12 67.8
Msa0459770 AT5G16930.1 31.361 169 100 7 195 362 397 550 4.26e-12 68.6
Msa0459770 AT5G17750.1 29.442 197 113 7 146 328 168 352 1.23e-11 66.2
Msa0459770 AT3G50940.1 26.042 192 125 6 187 370 238 420 1.25e-11 66.6
Msa0459770 AT5G17730.1 32.667 150 87 6 186 329 235 376 1.46e-11 66.2

Find 136 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTATCTCCAAATGTTTA+AGG 0.164113 3_3:-56536051 Msa0459770:three_prime_UTR
CTGTTATCTCCAAATGTTTA+AGG 0.164113 3_3:-56536131 Msa0459770:three_prime_UTR
TTCATCACTCAAATTCATTT+TGG 0.169004 3_3:+56537106 None:intergenic
AAGACGGTGATTAGAGAATT+TGG 0.176439 3_3:+56541925 None:intergenic
GATTAGAGAATTTGGGAATT+AGG 0.201424 3_3:+56541933 None:intergenic
GGTGGTTCGGTGAGGGGTTT+TGG 0.215133 3_3:+56541870 None:intergenic
GCTTGTGATCGGTCAGTTTA+TGG 0.222132 3_3:-56541649 Msa0459770:CDS
CGTCTTTGACGTACTCTTCT+TGG 0.228430 3_3:+56541739 None:intergenic
GGTTTCGGTGATGTGGGATT+TGG 0.234014 3_3:+56541955 None:intergenic
CCTCACGAATTTCCTGCTTT+TGG 0.258382 3_3:+56540163 None:intergenic
TTGTTTGATTATTTCATATA+TGG 0.273312 3_3:-56536181 Msa0459770:three_prime_UTR
GTGGGATTTGGGATTGGAAT+TGG 0.277285 3_3:+56541967 None:intergenic
AGATCCAACAATCCCGTTAT+TGG 0.278931 3_3:+56541614 None:intergenic
ATTAGAGAATTTGGGAATTA+GGG 0.282115 3_3:+56541934 None:intergenic
GTTTCGGTGATGTGGGATTT+GGG 0.285177 3_3:+56541956 None:intergenic
TTCTCTATCAGCTCCGGTTT+GGG 0.296427 3_3:+56538498 None:intergenic
CCTGAAATACAAGCCTCTTT+TGG 0.301281 3_3:+56538116 None:intergenic
TGGGATTTGGGATTGGAATT+GGG 0.311997 3_3:+56541968 None:intergenic
ACAAGATTTCCTTAAACATT+TGG 0.319263 3_3:+56536042 None:intergenic
ACAAGATTTCCTTAAACATT+TGG 0.319263 3_3:+56536122 None:intergenic
CACGAGCTATACAAACAAAT+TGG 0.338056 3_3:-56540117 Msa0459770:CDS
AAATAATTCCATTACATAAC+AGG 0.340543 3_3:+56536237 None:intergenic
AGACGGTGATTAGAGAATTT+GGG 0.345290 3_3:+56541926 None:intergenic
TGCTGCTTTCATCAGGGTTG+TGG 0.346438 3_3:-56540007 Msa0459770:CDS
AAACACATCACGAACCATTC+GGG 0.352078 3_3:+56538597 None:intergenic
GGAGGAGGAATCGGTGTCGG+TGG 0.352501 3_3:+56541824 None:intergenic
CTTCTCTATCAGCTCCGGTT+TGG 0.355197 3_3:+56538497 None:intergenic
ATACCACTGCTGCTTTCATC+AGG 0.361269 3_3:-56540014 Msa0459770:CDS
AGGACTTTGAGAAAGGTTAT+AGG 0.368020 3_3:-56536434 Msa0459770:CDS
GAAGGTGGTGGTTCGGTGAG+GGG 0.372022 3_3:+56541864 None:intergenic
CTGACTAAGAAGCGAGATAC+TGG 0.377621 3_3:+56541461 None:intergenic
GGAGGAATCGGTGTCGGTGG+GGG 0.382146 3_3:+56541827 None:intergenic
TCATCGATAAATATAATTGC+AGG 0.388188 3_3:+56538553 None:intergenic
GCTGCTTTCATCAGGGTTGT+GGG 0.388279 3_3:-56540006 Msa0459770:CDS
GGTGATGTGGGATTTGGGAT+TGG 0.391186 3_3:+56541961 None:intergenic
GGCGGGAAACATAATCTTCC+AGG 0.395124 3_3:+56537078 None:intergenic
GATCCTGCCCTCTTGCGTCC+TGG 0.401876 3_3:-56538181 Msa0459770:CDS
CATTATGACTTTAACATTCA+CGG 0.404355 3_3:+56538228 None:intergenic
CGTGAATGTTAAAGTCATAA+TGG 0.406502 3_3:-56538227 Msa0459770:CDS
GAATTTGGGAATTAGGGTTT+CGG 0.409468 3_3:+56541940 None:intergenic
GAAACACATCACGAACCATT+CGG 0.419127 3_3:+56538596 None:intergenic
TAACCTTTCTCAAAGTCCTT+TGG 0.419151 3_3:+56536438 None:intergenic
GAGGAGAAAGAAAGGGAAGG+TGG 0.419318 3_3:+56541849 None:intergenic
GGGATTGTTGGATCTACTAC+TGG 0.424932 3_3:-56541606 Msa0459770:CDS
GAGTTTGTGCAGAAGTATCT+TGG 0.426306 3_3:-56539979 Msa0459770:CDS
TAATCAAACAAGCAGGTATT+CGG 0.427456 3_3:+56536193 None:intergenic
TGAATTCGAGTTGGCGTTGG+AGG 0.434349 3_3:+56541769 None:intergenic
GGGAAGGTGGTGGTTCGGTG+AGG 0.438745 3_3:+56541862 None:intergenic
TACATTTCTGGAGTAATTGT+GGG 0.439355 3_3:-56536305 Msa0459770:three_prime_UTR
GTCGGAGGTGGAGGAGGAAT+CGG 0.439640 3_3:+56541815 None:intergenic
AATTAGGGTTTCGGTGATGT+GGG 0.444031 3_3:+56541949 None:intergenic
GTAAAATTCAAAGTCAGTAT+CGG 0.445770 3_3:+56536395 None:intergenic
TAAAATTCAAAGTCAGTATC+GGG 0.446190 3_3:+56536396 None:intergenic
AGTGTAGAGGTCGTCGGAGG+TGG 0.449340 3_3:+56541803 None:intergenic
CGATGAATTCGAGTTGGCGT+TGG 0.450317 3_3:+56541766 None:intergenic
GAGGAGGAATCGGTGTCGGT+GGG 0.454250 3_3:+56541825 None:intergenic
GTTGGCGTTGGAGGGATTTG+AGG 0.454459 3_3:+56541778 None:intergenic
GAGATACTGGAATCAGCTTC+CGG 0.455701 3_3:+56541474 None:intergenic
GATACCAATAACGGGATTGT+TGG 0.456797 3_3:-56541618 Msa0459770:CDS
TGACTTTAACATTCACGGTC+TGG 0.457053 3_3:+56538233 None:intergenic
AGGAGGAATCGGTGTCGGTG+GGG 0.459912 3_3:+56541826 None:intergenic
CTTATTTGTTTGTGTACGTA+CGG 0.461422 3_3:-56536352 Msa0459770:three_prime_UTR
GTAGAGGTCGTCGGAGGTGG+AGG 0.461719 3_3:+56541806 None:intergenic
GGAAGGTGGTGGTTCGGTGA+GGG 0.462453 3_3:+56541863 None:intergenic
CTACCAAAGGACTTTGAGAA+AGG 0.468426 3_3:-56536441 Msa0459770:CDS
ACGCGAGCTTCTTCGTGCTC+AGG 0.470975 3_3:-56541700 Msa0459770:CDS
CTAATCACCGTCTTCAACCA+TGG 0.472662 3_3:-56541916 Msa0459770:exon
GAATTAGGGTTTCGGTGATG+TGG 0.478579 3_3:+56541948 None:intergenic
AGAAAGGGAAGGTGGTGGTT+CGG 0.487115 3_3:+56541857 None:intergenic
TTACATTTCTGGAGTAATTG+TGG 0.492769 3_3:-56536306 Msa0459770:three_prime_UTR
GGTATGATTAGCAACAGCTT+TGG 0.495289 3_3:+56540032 None:intergenic
GCTAGATTTGATGCCCAAAC+CGG 0.497124 3_3:-56538511 Msa0459770:CDS
AACCATGGGTTCCTCCGCGA+TGG 0.502713 3_3:-56541901 Msa0459770:exon
CTTCCAGGACGCAAGAGGGC+AGG 0.504188 3_3:+56538178 None:intergenic
GAGGTCGTCGGAGGTGGAGG+AGG 0.504703 3_3:+56541809 None:intergenic
CGATCACAAGCGGAACAGAT+TGG 0.506443 3_3:+56541661 None:intergenic
TTTGGAGATAACAGTACCAT+TGG 0.508346 3_3:+56536060 None:intergenic
TTTGGAGATAACAGTACCAT+TGG 0.508346 3_3:+56536140 None:intergenic
CTGTACTTCTCTATCAGCTC+CGG 0.516937 3_3:+56538492 None:intergenic
AACAAATCGTGCAGACACTT+TGG 0.518337 3_3:-56538203 Msa0459770:CDS
TTGATTATTTCATATATGGT+AGG 0.521075 3_3:-56536177 Msa0459770:three_prime_UTR
GCAGGAAATTCGTGAGGCTG+TGG 0.521953 3_3:-56540157 Msa0459770:CDS
GAATTCGAGTTGGCGTTGGA+GGG 0.523311 3_3:+56541770 None:intergenic
CAATCTGTTCCGCTTGTGAT+CGG 0.526522 3_3:-56541660 Msa0459770:CDS
GAGATGGTTGATACCAATAA+CGG 0.529111 3_3:-56541627 Msa0459770:CDS
AGATGGTTGATACCAATAAC+GGG 0.529335 3_3:-56541626 Msa0459770:CDS
TCTGCTATTTGTCAAGAAGC+AGG 0.531504 3_3:-56536498 Msa0459770:CDS
TGCCTGATAGACGCCAAAAG+AGG 0.531552 3_3:-56538129 Msa0459770:CDS
TCTTGTTGATGTTCTTCCAC+CGG 0.532236 3_3:-56541493 Msa0459770:CDS
AATGAATTTGAGTGATGAAG+TGG 0.534248 3_3:-56537102 Msa0459770:CDS
CATCGATAAATATAATTGCA+GGG 0.545604 3_3:+56538554 None:intergenic
GAGAAAGAAAGGGAAGGTGG+TGG 0.548682 3_3:+56541852 None:intergenic
TGCAATTATATTTATCGATG+AGG 0.551043 3_3:-56538551 Msa0459770:CDS
AGAAGTACAGCGTATCCTCA+TGG 0.552905 3_3:-56538479 Msa0459770:CDS
AACCATCGCGGAGGAACCCA+TGG 0.553976 3_3:+56541899 None:intergenic
GGTGGAGGAGGAATCGGTGT+CGG 0.555347 3_3:+56541821 None:intergenic
TTTGGCGTCTATCAGGCAAA+GGG 0.557869 3_3:+56538134 None:intergenic
TATGAAATAATCAAACAAGC+AGG 0.566680 3_3:+56536186 None:intergenic
GGGATTTGAGGAGAGTGTAG+AGG 0.570748 3_3:+56541790 None:intergenic
GTGCTCAGGAAGAAGTCAAA+CGG 0.571701 3_3:-56541686 Msa0459770:CDS
AGGATGTGATATCCAAAAGC+AGG 0.572198 3_3:-56540175 Msa0459770:CDS
GATCGGTCAGTTTATGGAGA+TGG 0.573018 3_3:-56541643 Msa0459770:CDS
CTAACATTATAAGTAACATC+AGG 0.576889 3_3:+56541429 None:intergenic
TAATCACCGTCTTCAACCAT+GGG 0.580633 3_3:-56541915 Msa0459770:exon
TGACAAAATTAGTGCTGCTG+AGG 0.584034 3_3:-56537054 Msa0459770:intron
TACCACTGCTGCTTTCATCA+GGG 0.587666 3_3:-56540013 Msa0459770:CDS
GGATATCGATGAATTCGAGT+TGG 0.588008 3_3:+56541760 None:intergenic
GAGGAGAGTGTAGAGGTCGT+CGG 0.588851 3_3:+56541797 None:intergenic
AAGATACTTCTGCACAAACT+CGG 0.590374 3_3:+56539981 None:intergenic
CAAGTCTTCCAGGACGCAAG+AGG 0.595014 3_3:+56538173 None:intergenic
TATATTTCAGGGTCCCCGAA+TGG 0.596230 3_3:-56538611 Msa0459770:intron
TATAGCTCGTGATGCGTGAG+AGG 0.600851 3_3:+56540129 None:intergenic
TAGATATGTCATACTACCAA+AGG 0.601083 3_3:-56536454 Msa0459770:CDS
AGTATCGGGCTTCTTCACAT+TGG 0.603811 3_3:+56536410 None:intergenic
GAAGTATATCAAATGAAGTG+AGG 0.605404 3_3:+56542004 None:intergenic
ATCGATAAATATAATTGCAG+GGG 0.614874 3_3:+56538555 None:intergenic
GATGAAAAGTATGCAAGAGT+CGG 0.616686 3_3:+56536259 None:intergenic
TTTGAGTGATGAAGTGGACC+TGG 0.618848 3_3:-56537096 Msa0459770:CDS
ATAAACTGACCGATCACAAG+CGG 0.619421 3_3:+56541651 None:intergenic
CTGGGTCGAATTATTATGTG+AGG 0.621655 3_3:-56541587 Msa0459770:CDS
GGGGAGGAGAAAGAAAGGGA+AGG 0.627914 3_3:+56541846 None:intergenic
AACCCTGATGAAAGCAGCAG+TGG 0.632358 3_3:+56540011 None:intergenic
GAGGAACCCATGGTTGAAGA+CGG 0.635930 3_3:+56541909 None:intergenic
AAGTCTTCCAGGACGCAAGA+GGG 0.648990 3_3:+56538174 None:intergenic
GGATTGTTGGATCTACTACT+GGG 0.650874 3_3:-56541605 Msa0459770:CDS
TGTGCAGAAGTATCTTGGAG+AGG 0.651686 3_3:-56539974 Msa0459770:intron
TGAAGCGCAACCGAAGCCGA+CGG 0.661966 3_3:+56541531 None:intergenic
GAGAGTGTAGAGGTCGTCGG+AGG 0.667816 3_3:+56541800 None:intergenic
AACACATCACGAACCATTCG+GGG 0.667959 3_3:+56538598 None:intergenic
TATAGTAAAACACCTCGAGG+TGG 0.670491 3_3:+56540087 None:intergenic
ATACTGGAATCAGCTTCCGG+TGG 0.671138 3_3:+56541477 None:intergenic
CCAAAAGCAGGAAATTCGTG+AGG 0.677845 3_3:-56540163 Msa0459770:CDS
CCATATAGTAAAACACCTCG+AGG 0.699181 3_3:+56540084 None:intergenic
CCTGATTCAAAAGTTCCATG+AGG 0.723398 3_3:+56538464 None:intergenic
TGGATCGAGAACCATCGCGG+AGG 0.728264 3_3:+56541890 None:intergenic
ATTGGTATTGATCCACCTCG+AGG 0.734273 3_3:-56540099 Msa0459770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATTATAAAATTATGA+AGG + chr3_3:56536624-56536643 None:intergenic 10.0%
!!! TTTTATAATTTGTTTTTGAT+TGG - chr3_3:56536630-56536649 Msa0459770:intron 10.0%
!!! TTTATAATTTGTTTTTGATT+GGG - chr3_3:56536631-56536650 Msa0459770:intron 10.0%
!!! ATATATTTCTAATTTTCAAT+TGG - chr3_3:56536763-56536782 Msa0459770:intron 10.0%
!!! TATATTTCTAATTTTCAATT+GGG - chr3_3:56536764-56536783 Msa0459770:intron 10.0%
!!! AATTATAGTATTTTTGATTT+TGG - chr3_3:56537019-56537038 Msa0459770:intron 10.0%
!! TTTATCATATATACTTTATT+GGG - chr3_3:56538209-56538228 Msa0459770:CDS 10.0%
!!! TAAACTTTTTTTTTATTAGA+TGG - chr3_3:56539759-56539778 Msa0459770:intron 10.0%
!!! TCTTTTTTCATAATTTTTAT+GGG + chr3_3:56540269-56540288 None:intergenic 10.0%
!!! TTCTTTTTTCATAATTTTTA+TGG + chr3_3:56540270-56540289 None:intergenic 10.0%
!!! ATATTTCTAATTTTCAATTG+GGG - chr3_3:56536765-56536784 Msa0459770:intron 15.0%
!! TAAAATCATATTTAGATCTA+GGG + chr3_3:56536991-56537010 None:intergenic 15.0%
!! ATATTTAAACCATTAAAGAT+TGG - chr3_3:56537368-56537387 Msa0459770:intron 15.0%
!!! CATTTTAAACTATATTTTTG+TGG - chr3_3:56537779-56537798 Msa0459770:intron 15.0%
!! GTTTATCATATATACTTTAT+TGG - chr3_3:56538208-56538227 Msa0459770:CDS 15.0%
!!! TTATCTACATTTCTAAAAAT+AGG - chr3_3:56538336-56538355 Msa0459770:intron 15.0%
!! TATAAAAATCAGTTAGTTAA+AGG + chr3_3:56538577-56538596 None:intergenic 15.0%
!!! TTTTATGACATTTTTGTAAT+AGG - chr3_3:56538837-56538856 Msa0459770:intron 15.0%
!! ATTTAAATTATCCAATATGT+CGG + chr3_3:56538996-56539015 None:intergenic 15.0%
!! ATAATTTAAATCAAGAAGAT+TGG - chr3_3:56539005-56539024 Msa0459770:intron 15.0%
!!! AGTATAAAATTTCACTTTTT+AGG + chr3_3:56539163-56539182 None:intergenic 15.0%
!!! TTTTCTTTCATTTATATTTC+AGG - chr3_3:56539402-56539421 Msa0459770:intron 15.0%
!! TTTCTTTCATTTATATTTCA+GGG - chr3_3:56539403-56539422 Msa0459770:intron 15.0%
!!! TTGTTTAATTTAATTACGTT+TGG - chr3_3:56540552-56540571 Msa0459770:intron 15.0%
!! GTAAAAAATATTCAAATTCA+TGG + chr3_3:56541047-56541066 None:intergenic 15.0%
!! TTGTTTGATTATTTCATATA+TGG - chr3_3:56541844-56541863 Msa0459770:CDS 15.0%
!! ATCAATCATTTACTAATTGA+AGG + chr3_3:56536706-56536725 None:intergenic 20.0%
!! TTAGTAAATGATTGATTGTT+AGG - chr3_3:56536710-56536729 Msa0459770:intron 20.0%
!! CTAAAATCATATTTAGATCT+AGG + chr3_3:56536992-56537011 None:intergenic 20.0%
!! ATCAAAAATACTATAATTGC+AGG + chr3_3:56537017-56537036 None:intergenic 20.0%
!!! AGCAATTATAGTGTTTTTTT+GGG + chr3_3:56537202-56537221 None:intergenic 20.0%
!!! AAGCAATTATAGTGTTTTTT+TGG + chr3_3:56537203-56537222 None:intergenic 20.0%
!! TGAAAAATGTTGAGTTTATT+TGG - chr3_3:56537472-56537491 Msa0459770:intron 20.0%
!! GAAAAATGTTGAGTTTATTT+GGG - chr3_3:56537473-56537492 Msa0459770:intron 20.0%
!!! TATGCTAAATTATTGATTCT+AGG - chr3_3:56537670-56537689 Msa0459770:intron 20.0%
!!! ATGCTAAATTATTGATTCTA+GGG - chr3_3:56537671-56537690 Msa0459770:intron 20.0%
!!! ATATGATTTTGATCTCTTTT+AGG - chr3_3:56537820-56537839 Msa0459770:intron 20.0%
!! GTATATATGATAAACCTTTA+CGG + chr3_3:56538203-56538222 None:intergenic 20.0%
!! AATAGCATAAATATCAATAC+TGG + chr3_3:56538384-56538403 None:intergenic 20.0%
!! ATATGTTAGGAAAAGATATA+GGG + chr3_3:56538876-56538895 None:intergenic 20.0%
!! TATATGTTAGGAAAAGATAT+AGG + chr3_3:56538877-56538896 None:intergenic 20.0%
!!! ATATCTTTTCCTAACATATA+AGG - chr3_3:56538877-56538896 Msa0459770:intron 20.0%
!!! TTTTTGTCAGTTAATACTAA+AGG + chr3_3:56539045-56539064 None:intergenic 20.0%
!!! AAATCTTGACTTTTTTTAAC+CGG - chr3_3:56539236-56539255 Msa0459770:intron 20.0%
!! TGAAAGAAAAGATTACAAAA+TGG + chr3_3:56539392-56539411 None:intergenic 20.0%
!! TGAATCAGGTATAAAAAAAA+AGG - chr3_3:56539575-56539594 Msa0459770:intron 20.0%
!! GAATCAGGTATAAAAAAAAA+GGG - chr3_3:56539576-56539595 Msa0459770:intron 20.0%
!! AATCAGGTATAAAAAAAAAG+GGG - chr3_3:56539577-56539596 Msa0459770:intron 20.0%
!!! CTTTTTTTTTATTAGATGGA+CGG - chr3_3:56539763-56539782 Msa0459770:intron 20.0%
!!! TTTTAACTGTTCTATCAATT+TGG + chr3_3:56540065-56540084 None:intergenic 20.0%
!! TAAAAAAAACTGAACTGAAT+TGG - chr3_3:56540080-56540099 Msa0459770:CDS 20.0%
!! TTGTAAAAAACCAAATGTAA+TGG - chr3_3:56540316-56540335 Msa0459770:intron 20.0%
!! ATAAAATGACCTATTATTAG+GGG + chr3_3:56540769-56540788 None:intergenic 20.0%
!! CATAAAATGACCTATTATTA+GGG + chr3_3:56540770-56540789 None:intergenic 20.0%
!! ACATAAAATGACCTATTATT+AGG + chr3_3:56540771-56540790 None:intergenic 20.0%
!!! TTTTTTTTGCAAACTTTTAG+TGG - chr3_3:56540812-56540831 Msa0459770:intron 20.0%
!!! ATGATTTATTTGATGATTGT+TGG - chr3_3:56541493-56541512 Msa0459770:CDS 20.0%
!! AAATAATTCCATTACATAAC+AGG + chr3_3:56541791-56541810 None:intergenic 20.0%
!! TTGATTATTTCATATATGGT+AGG - chr3_3:56541848-56541867 Msa0459770:CDS 20.0%
!! TAACATCTTATAAAAACCAA+TGG - chr3_3:56541949-56541968 Msa0459770:five_prime_UTR 20.0%
! ATTAGAGAATTTGGGAATTA+GGG + chr3_3:56536094-56536113 None:intergenic 25.0%
! CTAACATTATAAGTAACATC+AGG + chr3_3:56536599-56536618 None:intergenic 25.0%
! TTGATTGAATTGCTAAATCT+AGG - chr3_3:56536662-56536681 Msa0459770:intron 25.0%
! TGATTGAATTGCTAAATCTA+GGG - chr3_3:56536663-56536682 Msa0459770:intron 25.0%
! TACTCTGAATTTATCCAAAT+AGG - chr3_3:56536965-56536984 Msa0459770:intron 25.0%
!!! TGCTAAATTATTGATTCTAG+GGG - chr3_3:56537672-56537691 Msa0459770:intron 25.0%
! AGAGATCAAAATCATATCAA+GGG + chr3_3:56537817-56537836 None:intergenic 25.0%
! AAGAGATCAAAATCATATCA+AGG + chr3_3:56537818-56537837 None:intergenic 25.0%
!!! TTTGATCTCTTTTAGGATAT+TGG - chr3_3:56537827-56537846 Msa0459770:intron 25.0%
!! ATTTTGTATCGCTTCTATAA+GGG + chr3_3:56538295-56538314 None:intergenic 25.0%
!! TATTTTGTATCGCTTCTATA+AGG + chr3_3:56538296-56538315 None:intergenic 25.0%
! ATTCTATGTACTAGAGAATA+GGG + chr3_3:56538411-56538430 None:intergenic 25.0%
! AATTCTATGTACTAGAGAAT+AGG + chr3_3:56538412-56538431 None:intergenic 25.0%
! ATTCTCTAGTACATAGAATT+TGG - chr3_3:56538412-56538431 Msa0459770:intron 25.0%
!!! TTTTTTTAACCGGATTTCAT+TGG - chr3_3:56539246-56539265 Msa0459770:intron 25.0%
! ATCGATAAATATAATTGCAG+GGG + chr3_3:56539473-56539492 None:intergenic 25.0%
! CATCGATAAATATAATTGCA+GGG + chr3_3:56539474-56539493 None:intergenic 25.0%
! TCATCGATAAATATAATTGC+AGG + chr3_3:56539475-56539494 None:intergenic 25.0%
! TGCAATTATATTTATCGATG+AGG - chr3_3:56539474-56539493 Msa0459770:intron 25.0%
! TATAGGACATTAAATCAATG+TGG + chr3_3:56539683-56539702 None:intergenic 25.0%
! CATTATGACTTTAACATTCA+CGG + chr3_3:56539800-56539819 None:intergenic 25.0%
!! CCTATTATTGACTATAAACA+TGG + chr3_3:56539995-56540014 None:intergenic 25.0%
! CCATGTTTATAGTCAATAAT+AGG - chr3_3:56539992-56540011 Msa0459770:CDS 25.0%
!!! TTTTCAAATCTATGTTGGTT+CGG + chr3_3:56540169-56540188 None:intergenic 25.0%
!!! TCAGTTCTAATTTGGATTTT+AGG - chr3_3:56540488-56540507 Msa0459770:intron 25.0%
!!! CAGTTCTAATTTGGATTTTA+GGG - chr3_3:56540489-56540508 Msa0459770:intron 25.0%
!!! CTCTTTGATTAGTGATTTTT+TGG - chr3_3:56540512-56540531 Msa0459770:intron 25.0%
!!! TTTTTTGGTTCTCTAATGTT+AGG - chr3_3:56540527-56540546 Msa0459770:intron 25.0%
!!! TTGGTTTTAAGAATTTGTGA+TGG - chr3_3:56540587-56540606 Msa0459770:intron 25.0%
! TTTAAGAATTTGTGATGGTT+TGG - chr3_3:56540592-56540611 Msa0459770:intron 25.0%
!! CGGTTTTCAATATTATAAAC+CGG - chr3_3:56540684-56540703 Msa0459770:intron 25.0%
! AAAAAACCATAAAACCAAAC+TGG + chr3_3:56540740-56540759 None:intergenic 25.0%
!! TTTTTAACACCCCTAATAAT+AGG - chr3_3:56540757-56540776 Msa0459770:intron 25.0%
! CAAGTGAACTATCAAATAAT+AGG + chr3_3:56540883-56540902 None:intergenic 25.0%
!! TTCATCACTCAAATTCATTT+TGG + chr3_3:56540922-56540941 None:intergenic 25.0%
! AAGACTATTAATAACTTACC+CGG - chr3_3:56541116-56541135 Msa0459770:intron 25.0%
! TAAGGAAATATTAGATTGCT+TGG - chr3_3:56541357-56541376 Msa0459770:intron 25.0%
!! AGACAAATTTCTAAAAGGTT+TGG + chr3_3:56541467-56541486 None:intergenic 25.0%
! AATGCAGACAAATTTCTAAA+AGG + chr3_3:56541472-56541491 None:intergenic 25.0%
! TAAAATTCAAAGTCAGTATC+GGG + chr3_3:56541632-56541651 None:intergenic 25.0%
! GTAAAATTCAAAGTCAGTAT+CGG + chr3_3:56541633-56541652 None:intergenic 25.0%
!! AATTTTACAAGTGATGACAA+GGG - chr3_3:56541645-56541664 Msa0459770:CDS 25.0%
!!! TGCAGAATACATAGTTTTAA+TGG - chr3_3:56541696-56541715 Msa0459770:CDS 25.0%
!!! AGTTTTAATGGTTACATTTC+TGG - chr3_3:56541708-56541727 Msa0459770:CDS 25.0%
! TATGAAATAATCAAACAAGC+AGG + chr3_3:56541842-56541861 None:intergenic 25.0%
! GGAAAACTTATAAAAACCAA+TGG - chr3_3:56541869-56541888 Msa0459770:CDS 25.0%
! ACAAGATTTCCTTAAACATT+TGG + chr3_3:56541906-56541925 None:intergenic 25.0%
! ACAAGATTTCCTTAAACATT+TGG + chr3_3:56541906-56541925 None:intergenic 25.0%
GAAGTATATCAAATGAAGTG+AGG + chr3_3:56536024-56536043 None:intergenic 30.0%
GATTAGAGAATTTGGGAATT+AGG + chr3_3:56536095-56536114 None:intergenic 30.0%
!! GGATTTTGAGTACGATTAAT+CGG - chr3_3:56536459-56536478 Msa0459770:CDS 30.0%
!! GATTTTGAGTACGATTAATC+GGG - chr3_3:56536460-56536479 Msa0459770:CDS 30.0%
TCAATTGGGGTTTGATTATT+AGG - chr3_3:56536778-56536797 Msa0459770:intron 30.0%
GGGTTTGATTATTAGGTTTA+GGG - chr3_3:56536785-56536804 Msa0459770:intron 30.0%
CGTAAGTTGTTTATCCAAAT+AGG - chr3_3:56536920-56536939 Msa0459770:intron 30.0%
!!! ATTGCTTTTAGTCTTGATGT+TGG - chr3_3:56537089-56537108 Msa0459770:CDS 30.0%
! GCCACATAGTATGATTTTAT+CGG - chr3_3:56537120-56537139 Msa0459770:intron 30.0%
! CCACATAGTATGATTTTATC+GGG - chr3_3:56537121-56537140 Msa0459770:intron 30.0%
GTCATTGTCTCAAAATTTAG+CGG + chr3_3:56537257-56537276 None:intergenic 30.0%
TAAACCATTAAAGATTGGAG+TGG - chr3_3:56537373-56537392 Msa0459770:intron 30.0%
! TACGTTGAAACTGAAAGTAT+AGG - chr3_3:56537708-56537727 Msa0459770:intron 30.0%
! TGAAAGTATAGGTCATTATG+AGG - chr3_3:56537719-56537738 Msa0459770:intron 30.0%
AAAATCATATCAAGGGAGAA+TGG + chr3_3:56537810-56537829 None:intergenic 30.0%
GCACAGTAATATTGAAAGTT+AGG + chr3_3:56538165-56538184 None:intergenic 30.0%
ATTCATTATCCAGAGACATT+TGG + chr3_3:56538535-56538554 None:intergenic 30.0%
CTTTCCATGAAATAAGAAGA+CGG + chr3_3:56538655-56538674 None:intergenic 30.0%
GGCAATTTCAATTGGAAAAA+GGG + chr3_3:56538722-56538741 None:intergenic 30.0%
AGGCAATTTCAATTGGAAAA+AGG + chr3_3:56538723-56538742 None:intergenic 30.0%
CTGTATAGATATTTGAGTGA+CGG - chr3_3:56538772-56538791 Msa0459770:intron 30.0%
! AGTGCTATTCCTTATATGTT+AGG + chr3_3:56538889-56538908 None:intergenic 30.0%
CAGAAACTGAAAGAAAACTA+AGG + chr3_3:56539098-56539117 None:intergenic 30.0%
TGCATCTGATTATCATAATG+TGG + chr3_3:56539121-56539140 None:intergenic 30.0%
!! ATTTTTCAAATTCGAAGTCC+AGG + chr3_3:56539220-56539239 None:intergenic 30.0%
!!! TAATGAGTTTTGAAACTCTG+AGG + chr3_3:56539324-56539343 None:intergenic 30.0%
AAAAAAAGGGGCAGTTTATT+AGG - chr3_3:56539589-56539608 Msa0459770:intron 30.0%
!! GAGAGTATTTAAAACAAGAG+CGG + chr3_3:56539727-56539746 None:intergenic 30.0%
TTAAATACTCTCTGATGTTC+TGG - chr3_3:56539735-56539754 Msa0459770:intron 30.0%
CGTGAATGTTAAAGTCATAA+TGG - chr3_3:56539798-56539817 Msa0459770:intron 30.0%
ACTGTTCTATCAATTTGGTT+TGG + chr3_3:56540060-56540079 None:intergenic 30.0%
GAACCAACATAGATTTGAAA+AGG - chr3_3:56540168-56540187 Msa0459770:CDS 30.0%
! TCTCCTTTTCAAATCTATGT+TGG + chr3_3:56540174-56540193 None:intergenic 30.0%
!! TTATCTGCTTTTGCTTTGAT+GGG + chr3_3:56540244-56540263 None:intergenic 30.0%
!! TTTATCTGCTTTTGCTTTGA+TGG + chr3_3:56540245-56540264 None:intergenic 30.0%
! ACAATGCTTCAGTTCTAATT+TGG - chr3_3:56540480-56540499 Msa0459770:intron 30.0%
! TATTTGAAACTGGAACCAAA+CGG + chr3_3:56540626-56540645 None:intergenic 30.0%
TGGTTCCAGTTTCAAATAAA+TGG - chr3_3:56540628-56540647 Msa0459770:intron 30.0%
! TTTGATAGTTCACTTGTAAC+AGG - chr3_3:56540887-56540906 Msa0459770:intron 30.0%
AATGAATTTGAGTGATGAAG+TGG - chr3_3:56540923-56540942 Msa0459770:intron 30.0%
TTATAAACCTCACAAGATGA+TGG + chr3_3:56541095-56541114 None:intergenic 30.0%
AGACTATTAATAACTTACCC+GGG - chr3_3:56541117-56541136 Msa0459770:intron 30.0%
AATCTGTCACAGTAATGAAA+AGG - chr3_3:56541162-56541181 Msa0459770:intron 30.0%
GTTTCTCATGAACTGAAAAT+TGG - chr3_3:56541201-56541220 Msa0459770:intron 30.0%
TAGATATGTCATACTACCAA+AGG - chr3_3:56541571-56541590 Msa0459770:CDS 30.0%
! GAATTTTACAAGTGATGACA+AGG - chr3_3:56541644-56541663 Msa0459770:CDS 30.0%
CTTATTTGTTTGTGTACGTA+CGG - chr3_3:56541673-56541692 Msa0459770:CDS 30.0%
!! TTACATTTCTGGAGTAATTG+TGG - chr3_3:56541719-56541738 Msa0459770:CDS 30.0%
!! TACATTTCTGGAGTAATTGT+GGG - chr3_3:56541720-56541739 Msa0459770:CDS 30.0%
! CTTTTCATCCTGTTATGTAA+TGG - chr3_3:56541780-56541799 Msa0459770:CDS 30.0%
TAATCAAACAAGCAGGTATT+CGG + chr3_3:56541835-56541854 None:intergenic 30.0%
CTGTTATCTCCAAATGTTTA+AGG - chr3_3:56541894-56541913 Msa0459770:CDS 30.0%
CTGTTATCTCCAAATGTTTA+AGG - chr3_3:56541894-56541913 Msa0459770:CDS 30.0%
GAATTTGGGAATTAGGGTTT+CGG + chr3_3:56536088-56536107 None:intergenic 35.0%
AGACGGTGATTAGAGAATTT+GGG + chr3_3:56536102-56536121 None:intergenic 35.0%
AAGACGGTGATTAGAGAATT+TGG + chr3_3:56536103-56536122 None:intergenic 35.0%
! GAGATGGTTGATACCAATAA+CGG - chr3_3:56536398-56536417 Msa0459770:CDS 35.0%
! AGATGGTTGATACCAATAAC+GGG - chr3_3:56536399-56536418 Msa0459770:CDS 35.0%
GGGGTTTGATTATTAGGTTT+AGG - chr3_3:56536784-56536803 Msa0459770:intron 35.0%
!!! CCTGTTTTGATTGGCTATTT+GGG - chr3_3:56536808-56536827 Msa0459770:intron 35.0%
TGTTTATCCAAATAGGCTCT+AGG - chr3_3:56536927-56536946 Msa0459770:intron 35.0%
AACTAAACCTAGAGCCTATT+TGG + chr3_3:56536937-56536956 None:intergenic 35.0%
! ATTTAGATCTAGGGCCTATT+TGG + chr3_3:56536982-56537001 None:intergenic 35.0%
!! TAGTCTTGATGTTGGCTTAT+TGG - chr3_3:56537097-56537116 Msa0459770:CDS 35.0%
!! AGTCTTGATGTTGGCTTATT+GGG - chr3_3:56537098-56537117 Msa0459770:CDS 35.0%
CCCGATAAAATCATACTATG+TGG + chr3_3:56537124-56537143 None:intergenic 35.0%
!! TAATTGCTTGCTATGATGCA+TGG - chr3_3:56537214-56537233 Msa0459770:intron 35.0%
AGTTCAATGTAATCACGTGT+CGG - chr3_3:56537279-56537298 Msa0459770:intron 35.0%
AGAATTCAAGTGTCTTTGGT+CGG - chr3_3:56537496-56537515 Msa0459770:intron 35.0%
TCGGTAGTTGCAATATAAGT+TGG - chr3_3:56537515-56537534 Msa0459770:intron 35.0%
ATATGCCCGTACTTTAATAG+TGG - chr3_3:56537542-56537561 Msa0459770:intron 35.0%
TGCTCTCCACTATTAAAGTA+CGG + chr3_3:56537551-56537570 None:intergenic 35.0%
TGAACTATATTCGTAACCTC+AGG + chr3_3:56537633-56537652 None:intergenic 35.0%
!! TTATTGATTCTAGGGGATTG+TGG - chr3_3:56537679-56537698 Msa0459770:intron 35.0%
!! TATTGATTCTAGGGGATTGT+GGG - chr3_3:56537680-56537699 Msa0459770:intron 35.0%
!!! GATCTCTTTTAGGATATTGG+AGG - chr3_3:56537830-56537849 Msa0459770:intron 35.0%
CACGAGCTATACAAACAAAT+TGG - chr3_3:56537908-56537927 Msa0459770:intron 35.0%
AAGATACTTCTGCACAAACT+CGG + chr3_3:56538047-56538066 None:intergenic 35.0%
! CTTTGTATTTTGCTCCGTAA+AGG - chr3_3:56538186-56538205 Msa0459770:CDS 35.0%
CTCTGGATAATGAATTCCAA+AGG - chr3_3:56538540-56538559 Msa0459770:CDS 35.0%
! AAAGGTTTTACGCAAACCTT+TGG + chr3_3:56538559-56538578 None:intergenic 35.0%
TAGGTAACAAAAGGGATGTT+TGG + chr3_3:56538632-56538651 None:intergenic 35.0%
AATTGGAAAAAGGGCAATGA+TGG + chr3_3:56538713-56538732 None:intergenic 35.0%
!! AAGCTCTAGGCAATTTCAAT+TGG + chr3_3:56538730-56538749 None:intergenic 35.0%
AGCACTATGAGAAACAGAAT+TGG - chr3_3:56538903-56538922 Msa0459770:intron 35.0%
!! CAGTACTTTCTAGAGTTGAT+TGG - chr3_3:56538958-56538977 Msa0459770:intron 35.0%
ACAAAAATCTTCCACAGAGT+TGG - chr3_3:56539058-56539077 Msa0459770:intron 35.0%
AATTCGAAGTCCAGGAAATA+GGG + chr3_3:56539212-56539231 None:intergenic 35.0%
AAATTCGAAGTCCAGGAAAT+AGG + chr3_3:56539213-56539232 None:intergenic 35.0%
GCATACATACCAATGAAATC+CGG + chr3_3:56539258-56539277 None:intergenic 35.0%
AATACCTCTATTGTTCTCTC+AGG - chr3_3:56539625-56539644 Msa0459770:intron 35.0%
! GTAGTCAAATCGAAGAGTAT+AGG + chr3_3:56539700-56539719 None:intergenic 35.0%
! ATTTTACGATCAAGTCTTCC+AGG + chr3_3:56539865-56539884 None:intergenic 35.0%
AATAATAGGTAGCCTGTTCA+TGG - chr3_3:56540006-56540025 Msa0459770:CDS 35.0%
ACTGAACTGTTATGGAAGTT+CGG + chr3_3:56540120-56540139 None:intergenic 35.0%
!! AAATCTATGTTGGTTCGGTT+CGG + chr3_3:56540164-56540183 None:intergenic 35.0%
ACTCAAACAGAAGAAAACGA+AGG - chr3_3:56540353-56540372 Msa0459770:intron 35.0%
CTCAAACAGAAGAAAACGAA+GGG - chr3_3:56540354-56540373 Msa0459770:intron 35.0%
TCCATTCATAACGGTGAAAT+TGG - chr3_3:56540425-56540444 Msa0459770:intron 35.0%
! CTGAGCCATTTATTTGAAAC+TGG + chr3_3:56540636-56540655 None:intergenic 35.0%
! GCTCAGTAAACTAACTGTTT+TGG - chr3_3:56540650-56540669 Msa0459770:intron 35.0%
!!! CTGTTTTGGTAAACGTAGTT+CGG - chr3_3:56540664-56540683 Msa0459770:intron 35.0%
!!! GAAACATTTTTAGCACGAAC+CGG + chr3_3:56540706-56540725 None:intergenic 35.0%
TTCATTTCAGTTCTCCAGTT+TGG - chr3_3:56540723-56540742 Msa0459770:intron 35.0%
!!! AGTTCTCCAGTTTGGTTTTA+TGG - chr3_3:56540731-56540750 Msa0459770:intron 35.0%
GACTATTAATAACTTACCCG+GGG - chr3_3:56541118-56541137 Msa0459770:intron 35.0%
!! TGAAAATTGGTGTTATGCTG+TGG - chr3_3:56541214-56541233 Msa0459770:intron 35.0%
! GTCAGTGCTGCTATAAAATA+AGG - chr3_3:56541339-56541358 Msa0459770:intron 35.0%
TCTCACAGCAATCTGTTAAA+TGG + chr3_3:56541431-56541450 None:intergenic 35.0%
TAACCTTTCTCAAAGTCCTT+TGG + chr3_3:56541590-56541609 None:intergenic 35.0%
! AGGACTTTGAGAAAGGTTAT+AGG - chr3_3:56541591-56541610 Msa0459770:CDS 35.0%
! GATGAAAAGTATGCAAGAGT+CGG + chr3_3:56541769-56541788 None:intergenic 35.0%
TTTGGAGATAACAGTACCAT+TGG + chr3_3:56541888-56541907 None:intergenic 35.0%
TTTGGAGATAACAGTACCAT+TGG + chr3_3:56541888-56541907 None:intergenic 35.0%
!! TTGGAATTGGGATCGCTTTT+AGG + chr3_3:56536048-56536067 None:intergenic 40.0%
! TGGGATTTGGGATTGGAATT+GGG + chr3_3:56536060-56536079 None:intergenic 40.0%
AATTAGGGTTTCGGTGATGT+GGG + chr3_3:56536079-56536098 None:intergenic 40.0%
TAATCACCGTCTTCAACCAT+GGG - chr3_3:56536110-56536129 Msa0459770:three_prime_UTR 40.0%
GGATATCGATGAATTCGAGT+TGG + chr3_3:56536268-56536287 None:intergenic 40.0%
ATAAACTGACCGATCACAAG+CGG + chr3_3:56536377-56536396 None:intergenic 40.0%
! GATACCAATAACGGGATTGT+TGG - chr3_3:56536407-56536426 Msa0459770:CDS 40.0%
AGATCCAACAATCCCGTTAT+TGG + chr3_3:56536414-56536433 None:intergenic 40.0%
GGATTGTTGGATCTACTACT+GGG - chr3_3:56536420-56536439 Msa0459770:CDS 40.0%
CTGGGTCGAATTATTATGTG+AGG - chr3_3:56536438-56536457 Msa0459770:CDS 40.0%
TCTTGTTGATGTTCTTCCAC+CGG - chr3_3:56536532-56536551 Msa0459770:intron 40.0%
!!! GCCTGTTTTGATTGGCTATT+TGG - chr3_3:56536807-56536826 Msa0459770:intron 40.0%
CCCAAATAGCCAATCAAAAC+AGG + chr3_3:56536811-56536830 None:intergenic 40.0%
TTTAGTCCTTGCAATTGCTG+TGG + chr3_3:56537345-56537364 None:intergenic 40.0%
GTGTCCACTCCAATCTTTAA+TGG + chr3_3:56537380-56537399 None:intergenic 40.0%
TGGGAGAATTCAAGTGTCTT+TGG - chr3_3:56537492-56537511 Msa0459770:intron 40.0%
GCTCTCCACTATTAAAGTAC+GGG + chr3_3:56537550-56537569 None:intergenic 40.0%
GCAATACTTGTAGATGAGCT+CGG - chr3_3:56537568-56537587 Msa0459770:intron 40.0%
CAATACTTGTAGATGAGCTC+GGG - chr3_3:56537569-56537588 Msa0459770:intron 40.0%
AATACTTGTAGATGAGCTCG+GGG - chr3_3:56537570-56537589 Msa0459770:intron 40.0%
! ATTGATTCTAGGGGATTGTG+GGG - chr3_3:56537681-56537700 Msa0459770:intron 40.0%
AGGATGTGATATCCAAAAGC+AGG - chr3_3:56537850-56537869 Msa0459770:intron 40.0%
TATAGTAAAACACCTCGAGG+TGG + chr3_3:56537941-56537960 None:intergenic 40.0%
CCATATAGTAAAACACCTCG+AGG + chr3_3:56537944-56537963 None:intergenic 40.0%
!! CCTCGAGGTGTTTTACTATA+TGG - chr3_3:56537941-56537960 Msa0459770:intron 40.0%
GGTATGATTAGCAACAGCTT+TGG + chr3_3:56537996-56538015 None:intergenic 40.0%
!! GAGTTTGTGCAGAAGTATCT+TGG - chr3_3:56538046-56538065 Msa0459770:intron 40.0%
! GACATTATCAAGCTAGCTTG+AGG + chr3_3:56538463-56538482 None:intergenic 40.0%
! AAGCTTTCAGTTTTCCCGTT+TGG - chr3_3:56538509-56538528 Msa0459770:CDS 40.0%
GAAGACGGTAGGTAACAAAA+GGG + chr3_3:56538640-56538659 None:intergenic 40.0%
AGAAGACGGTAGGTAACAAA+AGG + chr3_3:56538641-56538660 None:intergenic 40.0%
CCATGAAATAAGAAGACGGT+AGG + chr3_3:56538651-56538670 None:intergenic 40.0%
! CCTACCGTCTTCTTATTTCA+TGG - chr3_3:56538648-56538667 Msa0459770:intron 40.0%
AGAAACATCGCAAAAGCTCT+AGG + chr3_3:56538743-56538762 None:intergenic 40.0%
! TTGAGTGACGGAAAACTTCT+TGG - chr3_3:56538784-56538803 Msa0459770:intron 40.0%
!! GAGTTGATTGGTCTTGTTCT+TGG - chr3_3:56538970-56538989 Msa0459770:intron 40.0%
! AAATCTTCCACAGAGTTGGT+TGG - chr3_3:56539062-56539081 Msa0459770:intron 40.0%
TTTATGACCAACCAACTCTG+TGG + chr3_3:56539072-56539091 None:intergenic 40.0%
ATTCGAAGTCCAGGAAATAG+GGG + chr3_3:56539211-56539230 None:intergenic 40.0%
!!! TGAGTTTTGAAACTCTGAGG+AGG + chr3_3:56539321-56539340 None:intergenic 40.0%
AAACACATCACGAACCATTC+GGG + chr3_3:56539431-56539450 None:intergenic 40.0%
GAAACACATCACGAACCATT+CGG + chr3_3:56539432-56539451 None:intergenic 40.0%
CCTGATTCAAAAGTTCCATG+AGG + chr3_3:56539564-56539583 None:intergenic 40.0%
! CCTCATGGAACTTTTGAATC+AGG - chr3_3:56539561-56539580 Msa0459770:intron 40.0%
AACACCTGAGAGAACAATAG+AGG + chr3_3:56539632-56539651 None:intergenic 40.0%
GTTGTGAGTTGCAGTGTATT+AGG - chr3_3:56539649-56539668 Msa0459770:intron 40.0%
TGACTTTAACATTCACGGTC+TGG + chr3_3:56539795-56539814 None:intergenic 40.0%
AACAAATCGTGCAGACACTT+TGG - chr3_3:56539822-56539841 Msa0459770:intron 40.0%
! CCTGAAATACAAGCCTCTTT+TGG + chr3_3:56539912-56539931 None:intergenic 40.0%
CCAAAAGAGGCTTGTATTTC+AGG - chr3_3:56539909-56539928 Msa0459770:intron 40.0%
TCCATAACAGTTCAGTGAAC+TGG - chr3_3:56540124-56540143 Msa0459770:CDS 40.0%
ACCAGTTCACTGAACTGTTA+TGG + chr3_3:56540128-56540147 None:intergenic 40.0%
TGAAAAGGAGAAAGAGAGAG+AGG - chr3_3:56540183-56540202 Msa0459770:CDS 40.0%
CAGTTACGCTCCATTACATT+TGG + chr3_3:56540329-56540348 None:intergenic 40.0%
GGCAGAGATTCCATTCATAA+CGG - chr3_3:56540416-56540435 Msa0459770:intron 40.0%
GCCAATTTCACCGTTATGAA+TGG + chr3_3:56540429-56540448 None:intergenic 40.0%
!!! CGTTTGGCTGATTTGAGTTT+TGG - chr3_3:56540568-56540587 Msa0459770:intron 40.0%
! GGTTTGGTTATCTTACCGTT+TGG - chr3_3:56540608-56540627 Msa0459770:intron 40.0%
! CAGCAGCACTAATTTTGTCA+GGG + chr3_3:56540971-56540990 None:intergenic 40.0%
! TCAGCAGCACTAATTTTGTC+AGG + chr3_3:56540972-56540991 None:intergenic 40.0%
! TGACAAAATTAGTGCTGCTG+AGG - chr3_3:56540971-56540990 Msa0459770:intron 40.0%
TTCACTTCCATCATCTTGTG+AGG - chr3_3:56541085-56541104 Msa0459770:intron 40.0%
!! AAATTGGTGTTATGCTGTGG+AGG - chr3_3:56541217-56541236 Msa0459770:intron 40.0%
! TCTGCTATTTGTCAAGAAGC+AGG - chr3_3:56541527-56541546 Msa0459770:CDS 40.0%
! CTACCAAAGGACTTTGAGAA+AGG - chr3_3:56541584-56541603 Msa0459770:CDS 40.0%
! GTGGGATTTGGGATTGGAAT+TGG + chr3_3:56536061-56536080 None:intergenic 45.0%
GTTTCGGTGATGTGGGATTT+GGG + chr3_3:56536072-56536091 None:intergenic 45.0%
GAATTAGGGTTTCGGTGATG+TGG + chr3_3:56536080-56536099 None:intergenic 45.0%
CTAATCACCGTCTTCAACCA+TGG - chr3_3:56536109-56536128 Msa0459770:three_prime_UTR 45.0%
! TTTTGGATCGAGAACCATCG+CGG + chr3_3:56536141-56536160 None:intergenic 45.0%
CGTCTTTGACGTACTCTTCT+TGG + chr3_3:56536289-56536308 None:intergenic 45.0%
GTGCTCAGGAAGAAGTCAAA+CGG - chr3_3:56536339-56536358 Msa0459770:three_prime_UTR 45.0%
CAATCTGTTCCGCTTGTGAT+CGG - chr3_3:56536365-56536384 Msa0459770:three_prime_UTR 45.0%
GCTTGTGATCGGTCAGTTTA+TGG - chr3_3:56536376-56536395 Msa0459770:exon 45.0%
GATCGGTCAGTTTATGGAGA+TGG - chr3_3:56536382-56536401 Msa0459770:exon 45.0%
GGGATTGTTGGATCTACTAC+TGG - chr3_3:56536419-56536438 Msa0459770:CDS 45.0%
GAGATACTGGAATCAGCTTC+CGG + chr3_3:56536554-56536573 None:intergenic 45.0%
CTGACTAAGAAGCGAGATAC+TGG + chr3_3:56536567-56536586 None:intergenic 45.0%
! GGTTAGTTGCTGCGAAAACT+AGG - chr3_3:56536731-56536750 Msa0459770:intron 45.0%
!!! GGTTTAGGGCCTGTTTTGAT+TGG - chr3_3:56536799-56536818 Msa0459770:intron 45.0%
!! TAGGCTCTAGGTTTAGTTGC+TGG - chr3_3:56536939-56536958 Msa0459770:intron 45.0%
!! AGGCTCTAGGTTTAGTTGCT+GGG - chr3_3:56536940-56536959 Msa0459770:intron 45.0%
GCAAAGACACTGTTGATCGA+AGG + chr3_3:56537323-56537342 None:intergenic 45.0%
TCTTTGCCACAGCAATTGCA+AGG - chr3_3:56537336-56537355 Msa0459770:intron 45.0%
ATACTTGTAGATGAGCTCGG+GGG - chr3_3:56537571-56537590 Msa0459770:intron 45.0%
! CTATTGGTAGCTTGTGATCC+TGG - chr3_3:56537599-56537618 Msa0459770:intron 45.0%
CATATCAAGGGAGAATGGTC+AGG + chr3_3:56537805-56537824 None:intergenic 45.0%
! CCTCACGAATTTCCTGCTTT+TGG + chr3_3:56537865-56537884 None:intergenic 45.0%
CCAAAAGCAGGAAATTCGTG+AGG - chr3_3:56537862-56537881 Msa0459770:intron 45.0%
!! ATTGGTATTGATCCACCTCG+AGG - chr3_3:56537926-56537945 Msa0459770:intron 45.0%
!! ATTGTTTTGCCAGTTCCAGG+GGG + chr3_3:56537968-56537987 None:intergenic 45.0%
!! CATTGTTTTGCCAGTTCCAG+GGG + chr3_3:56537969-56537988 None:intergenic 45.0%
!! GCATTGTTTTGCCAGTTCCA+GGG + chr3_3:56537970-56537989 None:intergenic 45.0%
!! AGCATTGTTTTGCCAGTTCC+AGG + chr3_3:56537971-56537990 None:intergenic 45.0%
!! ATACCACTGCTGCTTTCATC+AGG - chr3_3:56538011-56538030 Msa0459770:intron 45.0%
!! TACCACTGCTGCTTTCATCA+GGG - chr3_3:56538012-56538031 Msa0459770:intron 45.0%
!! TGTGCAGAAGTATCTTGGAG+AGG - chr3_3:56538051-56538070 Msa0459770:intron 45.0%
TCCAGAGACATTTGGCCAAA+CGG + chr3_3:56538527-56538546 None:intergenic 45.0%
TGGAAAAAGGGCAATGATGG+AGG + chr3_3:56538710-56538729 None:intergenic 45.0%
CTTGTTCTTGGCCGACATAT+TGG - chr3_3:56538982-56539001 Msa0459770:intron 45.0%
ATTTATCGCCCCCTATTTCC+TGG - chr3_3:56539199-56539218 Msa0459770:intron 45.0%
TTCGAAGTCCAGGAAATAGG+GGG + chr3_3:56539210-56539229 None:intergenic 45.0%
! TTGAAACTCTGAGGAGGCTT+CGG + chr3_3:56539315-56539334 None:intergenic 45.0%
TATATTTCAGGGTCCCCGAA+TGG - chr3_3:56539414-56539433 Msa0459770:intron 45.0%
AACACATCACGAACCATTCG+GGG + chr3_3:56539430-56539449 None:intergenic 45.0%
GCTAGATTTGATGCCCAAAC+CGG - chr3_3:56539514-56539533 Msa0459770:intron 45.0%
TTCTCTATCAGCTCCGGTTT+GGG + chr3_3:56539530-56539549 None:intergenic 45.0%
CTGTACTTCTCTATCAGCTC+CGG + chr3_3:56539536-56539555 None:intergenic 45.0%
! AGAAGTACAGCGTATCCTCA+TGG - chr3_3:56539546-56539565 Msa0459770:intron 45.0%
TTTGGCGTCTATCAGGCAAA+GGG + chr3_3:56539894-56539913 None:intergenic 45.0%
! TTTTGGCGTCTATCAGGCAA+AGG + chr3_3:56539895-56539914 None:intergenic 45.0%
TAGGTAGCCTGTTCATGGTT+TGG - chr3_3:56540011-56540030 Msa0459770:CDS 45.0%
!! AGCCTGTTCATGGTTTGGTT+CGG - chr3_3:56540016-56540035 Msa0459770:CDS 45.0%
CAGAAGAAAACGAAGGGACT+AGG - chr3_3:56540360-56540379 Msa0459770:intron 45.0%
GGGACTAGGATTGTGATTCA+CGG - chr3_3:56540374-56540393 Msa0459770:intron 45.0%
CGATGTCACTGCATTTGAGA+CGG - chr3_3:56540448-56540467 Msa0459770:intron 45.0%
TTTGAGTGATGAAGTGGACC+TGG - chr3_3:56540929-56540948 Msa0459770:intron 45.0%
! AGCACTAATTTTGTCAGGGC+GGG + chr3_3:56540967-56540986 None:intergenic 45.0%
! CAGCACTAATTTTGTCAGGG+CGG + chr3_3:56540968-56540987 None:intergenic 45.0%
! AGTATCGGGCTTCTTCACAT+TGG + chr3_3:56541618-56541637 None:intergenic 45.0%
! GGTGATGTGGGATTTGGGAT+TGG + chr3_3:56536067-56536086 None:intergenic 50.0%
GGTTTCGGTGATGTGGGATT+TGG + chr3_3:56536073-56536092 None:intergenic 50.0%
GAGGAACCCATGGTTGAAGA+CGG + chr3_3:56536119-56536138 None:intergenic 50.0%
! AGAAAGGGAAGGTGGTGGTT+CGG + chr3_3:56536171-56536190 None:intergenic 50.0%
GAGAAAGAAAGGGAAGGTGG+TGG + chr3_3:56536176-56536195 None:intergenic 50.0%
GAGGAGAAAGAAAGGGAAGG+TGG + chr3_3:56536179-56536198 None:intergenic 50.0%
! GGGATTTGAGGAGAGTGTAG+AGG + chr3_3:56536238-56536257 None:intergenic 50.0%
!! GAATTCGAGTTGGCGTTGGA+GGG + chr3_3:56536258-56536277 None:intergenic 50.0%
!! TGAATTCGAGTTGGCGTTGG+AGG + chr3_3:56536259-56536278 None:intergenic 50.0%
!! CGATGAATTCGAGTTGGCGT+TGG + chr3_3:56536262-56536281 None:intergenic 50.0%
CGATCACAAGCGGAACAGAT+TGG + chr3_3:56536367-56536386 None:intergenic 50.0%
!!! TCGGGAGCTTTTGAAACCGT+CGG - chr3_3:56536478-56536497 Msa0459770:CDS 50.0%
!!! GCTTTTGAAACCGTCGGCTT+CGG - chr3_3:56536484-56536503 Msa0459770:CDS 50.0%
ATACTGGAATCAGCTTCCGG+TGG + chr3_3:56536551-56536570 None:intergenic 50.0%
TAACCTCAGGCATGAGAACC+AGG + chr3_3:56537620-56537639 None:intergenic 50.0%
TATAGCTCGTGATGCGTGAG+AGG + chr3_3:56537899-56537918 None:intergenic 50.0%
! GTTTTACTATATGGCCCCCC+TGG - chr3_3:56537950-56537969 Msa0459770:intron 50.0%
!! TTGTTTTGCCAGTTCCAGGG+GGG + chr3_3:56537967-56537986 None:intergenic 50.0%
AACCCTGATGAAAGCAGCAG+TGG + chr3_3:56538017-56538036 None:intergenic 50.0%
!! TGCTGCTTTCATCAGGGTTG+TGG - chr3_3:56538018-56538037 Msa0459770:intron 50.0%
! GCTGCTTTCATCAGGGTTGT+GGG - chr3_3:56538019-56538038 Msa0459770:intron 50.0%
CCAGAGACATTTGGCCAAAC+GGG + chr3_3:56538526-56538545 None:intergenic 50.0%
! TGAAACTCTGAGGAGGCTTC+GGG + chr3_3:56539314-56539333 None:intergenic 50.0%
CTTCTCTATCAGCTCCGGTT+TGG + chr3_3:56539531-56539550 None:intergenic 50.0%
AAGTCTTCCAGGACGCAAGA+GGG + chr3_3:56539854-56539873 None:intergenic 50.0%
TGCCTGATAGACGCCAAAAG+AGG - chr3_3:56539896-56539915 Msa0459770:intron 50.0%
! AGCCTCTTTTGGCGTCTATC+AGG + chr3_3:56539901-56539920 None:intergenic 50.0%
CTCCGAACCAAACCATGAAC+AGG + chr3_3:56540021-56540040 None:intergenic 50.0%
AGGATTGTGATTCACGGCGT+TGG - chr3_3:56540380-56540399 Msa0459770:intron 50.0%
GGATTGTGATTCACGGCGTT+GGG - chr3_3:56540381-56540400 Msa0459770:intron 50.0%
!! GGCGTTGGGAATGGTTTTCA+CGG - chr3_3:56540395-56540414 Msa0459770:intron 50.0%
GGCGGGAAACATAATCTTCC+AGG + chr3_3:56540950-56540969 None:intergenic 50.0%
TAACTTACCCGGGGAGTAGT+TGG - chr3_3:56541127-56541146 Msa0459770:intron 50.0%
AGAAGCTACCAACTACTCCC+CGG + chr3_3:56541138-56541157 None:intergenic 50.0%
GGGGAGGAGAAAGAAAGGGA+AGG + chr3_3:56536182-56536201 None:intergenic 55.0%
GGTGGGGGAGGAGAAAGAAA+GGG + chr3_3:56536186-56536205 None:intergenic 55.0%
! GAGGAGAGTGTAGAGGTCGT+CGG + chr3_3:56536231-56536250 None:intergenic 55.0%
! GTTGGCGTTGGAGGGATTTG+AGG + chr3_3:56536250-56536269 None:intergenic 55.0%
!! TCACGTGTCGGTGTCAGACA+CGG - chr3_3:56537291-56537310 Msa0459770:intron 55.0%
GAGCTCGGGGGAGTTTCTAT+TGG - chr3_3:56537583-56537602 Msa0459770:intron 55.0%
! GATCCTGGTTCTCATGCCTG+AGG - chr3_3:56537614-56537633 Msa0459770:intron 55.0%
GCAGGAAATTCGTGAGGCTG+TGG - chr3_3:56537868-56537887 Msa0459770:intron 55.0%
CCCGTTTGGCCAAATGTCTC+TGG - chr3_3:56538523-56538542 Msa0459770:CDS 55.0%
CAAGTCTTCCAGGACGCAAG+AGG + chr3_3:56539855-56539874 None:intergenic 55.0%
! GTGATTCACGGCGTTGGGAA+TGG - chr3_3:56540386-56540405 Msa0459770:intron 55.0%
! ACTGCATTTGAGACGGCGAG+TGG - chr3_3:56540455-56540474 Msa0459770:intron 55.0%
GAAGCTACCAACTACTCCCC+GGG + chr3_3:56541137-56541156 None:intergenic 55.0%
AACCATGGGTTCCTCCGCGA+TGG - chr3_3:56536124-56536143 Msa0459770:three_prime_UTR 60.0%
AACCATCGCGGAGGAACCCA+TGG + chr3_3:56536129-56536148 None:intergenic 60.0%
TGGATCGAGAACCATCGCGG+AGG + chr3_3:56536138-56536157 None:intergenic 60.0%
!!! GGTGGTTCGGTGAGGGGTTT+TGG + chr3_3:56536158-56536177 None:intergenic 60.0%
!! GAAGGTGGTGGTTCGGTGAG+GGG + chr3_3:56536164-56536183 None:intergenic 60.0%
!! GGAAGGTGGTGGTTCGGTGA+GGG + chr3_3:56536165-56536184 None:intergenic 60.0%
CGGTGGGGGAGGAGAAAGAA+AGG + chr3_3:56536187-56536206 None:intergenic 60.0%
!! AGGAGGAATCGGTGTCGGTG+GGG + chr3_3:56536202-56536221 None:intergenic 60.0%
!! GAGGAGGAATCGGTGTCGGT+GGG + chr3_3:56536203-56536222 None:intergenic 60.0%
GGTGGAGGAGGAATCGGTGT+CGG + chr3_3:56536207-56536226 None:intergenic 60.0%
GTCGGAGGTGGAGGAGGAAT+CGG + chr3_3:56536213-56536232 None:intergenic 60.0%
AGTGTAGAGGTCGTCGGAGG+TGG + chr3_3:56536225-56536244 None:intergenic 60.0%
! GAGAGTGTAGAGGTCGTCGG+AGG + chr3_3:56536228-56536247 None:intergenic 60.0%
ACGCGAGCTTCTTCGTGCTC+AGG - chr3_3:56536325-56536344 Msa0459770:three_prime_UTR 60.0%
TGAAGCGCAACCGAAGCCGA+CGG + chr3_3:56536497-56536516 None:intergenic 60.0%
!! CACGTGTCGGTGTCAGACAC+GGG - chr3_3:56537292-56537311 Msa0459770:intron 60.0%
CTATATGGCCCCCCTGGAAC+TGG - chr3_3:56537956-56537975 Msa0459770:intron 60.0%
! GGAGGCTTCGGGAAGAGTAC+TGG + chr3_3:56539303-56539322 None:intergenic 60.0%
!! GGGAAGGTGGTGGTTCGGTG+AGG + chr3_3:56536166-56536185 None:intergenic 65.0%
!! GGAGGAATCGGTGTCGGTGG+GGG + chr3_3:56536201-56536220 None:intergenic 65.0%
!! GGAGGAGGAATCGGTGTCGG+TGG + chr3_3:56536204-56536223 None:intergenic 65.0%
GTAGAGGTCGTCGGAGGTGG+AGG + chr3_3:56536222-56536241 None:intergenic 65.0%
GATCCTGCCCTCTTGCGTCC+TGG - chr3_3:56539844-56539863 Msa0459770:intron 65.0%
CTTCCAGGACGCAAGAGGGC+AGG + chr3_3:56539850-56539869 None:intergenic 65.0%
!! GGAATCGGTGTCGGTGGGGG+AGG + chr3_3:56536198-56536217 None:intergenic 70.0%
GAGGTCGTCGGAGGTGGAGG+AGG + chr3_3:56536219-56536238 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 56536006 56542041 56536006 ID=Msa0459770;Name=Msa0459770
chr3_3 mRNA 56536006 56542041 56536006 ID=Msa0459770-mRNA-1;Parent=Msa0459770;Name=Msa0459770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=122|0.8|0.83|1|1|1|6|383|412
chr3_3 exon 56536006 56536523 56536006 ID=Msa0459770-mRNA-1:exon:11327;Parent=Msa0459770-mRNA-1
chr3_3 exon 56537055 56537138 56537055 ID=Msa0459770-mRNA-1:exon:11326;Parent=Msa0459770-mRNA-1
chr3_3 exon 56538126 56538269 56538126 ID=Msa0459770-mRNA-1:exon:11325;Parent=Msa0459770-mRNA-1
chr3_3 exon 56538465 56538623 56538465 ID=Msa0459770-mRNA-1:exon:11324;Parent=Msa0459770-mRNA-1
chr3_3 exon 56539975 56540205 56539975 ID=Msa0459770-mRNA-1:exon:11323;Parent=Msa0459770-mRNA-1
chr3_3 exon 56541434 56542041 56541434 ID=Msa0459770-mRNA-1:exon:11322;Parent=Msa0459770-mRNA-1
chr3_3 five_prime_UTR 56541920 56542041 56541920 ID=Msa0459770-mRNA-1:five_prime_utr;Parent=Msa0459770-mRNA-1
chr3_3 CDS 56541434 56541919 56541434 ID=Msa0459770-mRNA-1:cds;Parent=Msa0459770-mRNA-1
chr3_3 CDS 56539975 56540205 56539975 ID=Msa0459770-mRNA-1:cds;Parent=Msa0459770-mRNA-1
chr3_3 CDS 56538465 56538623 56538465 ID=Msa0459770-mRNA-1:cds;Parent=Msa0459770-mRNA-1
chr3_3 CDS 56538126 56538269 56538126 ID=Msa0459770-mRNA-1:cds;Parent=Msa0459770-mRNA-1
chr3_3 CDS 56537055 56537138 56537055 ID=Msa0459770-mRNA-1:cds;Parent=Msa0459770-mRNA-1
chr3_3 CDS 56536389 56536523 56536389 ID=Msa0459770-mRNA-1:cds;Parent=Msa0459770-mRNA-1
chr3_3 three_prime_UTR 56536006 56536388 56536006 ID=Msa0459770-mRNA-1:three_prime_utr;Parent=Msa0459770-mRNA-1
Gene Sequence

>Msa0459770

ATGGGTTCCTCCGCGATGGTTCTCGATCCAAAACCCCTCACCGAACCACCACCTTCCCTTTCTTTCTCCTCCCCCACCGACACCGATTCCTCCTCCACCTCCGACGACCTCTACACTCTCCTCAAATCCCTCCAACGCCAACTCGAATTCATCGATATCCAAGAAGAGTACGTCAAAGACGAACAAAAGAATCTCAAACGCGAGCTTCTTCGTGCTCAGGAAGAAGTCAAACGGATCCAATCTGTTCCGCTTGTGATCGGTCAGTTTATGGAGATGGTTGATACCAATAACGGGATTGTTGGATCTACTACTGGGTCGAATTATTATGTGAGGATTTTGAGTACGATTAATCGGGAGCTTTTGAAACCGTCGGCTTCGGTTGCGCTTCATCGTCATTCGAATGCTCTTGTTGATGTTCTTCCACCGGAAGCTGATTCCAGTATCTCGCTTCTTAGTCAGTCTGAGAAGCCTGATGTTACTTATAATGATATTGGAGGATGTGATATCCAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCTCTCACGCATCACGAGCTATACAAACAAATTGGTATTGATCCACCTCGAGGTGTTTTACTATATGGCCCCCCTGGAACTGGCAAAACAATGCTTGCCAAAGCTGTTGCTAATCATACCACTGCTGCTTTCATCAGGGTTGTGGGATCCGAGTTTGTGCAGAAGTATCTTGGAGAGGGTCCCCGAATGGTTCGTGATGTGTTTCGTCTTGCAAAAGAAAACGCCCCTGCAATTATATTTATCGATGAGGTAGATGCGATAGCTACTGCTAGATTTGATGCCCAAACCGGAGCTGATAGAGAAGTACAGCGTATCCTCATGGAACTTTTGAATCAGATGGACGGTTTTGACCAGACCGTGAATGTTAAAGTCATAATGGCAACAAATCGTGCAGACACTTTGGATCCTGCCCTCTTGCGTCCTGGAAGACTTGATCGTAAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTTGTTTGCACAGCCAAAATGAATTTGAGTGATGAAGTGGACCTGGAAGATTATGTTTCCCGCCCTGACAAAATTAGTGCTGCTGAGATATCTGCTATTTGTCAAGAAGCAGGAATGCATGCTGTTCGTAAGAATAGATATGTCATACTACCAAAGGACTTTGAGAAAGGTTATAGGACCAATGTGAAGAAGCCCGATACTGACTTTGAATTTTACAAGTGA
Protein sequence

>Msa0459770

MGSSAMVLDPKPLTEPPPSLSFSSPTDTDSSSTSDDLYTLLKSLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDTNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVCTAKMNLSDEVDLEDYVSRPDKISAAEISAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK*