AlfalfaGEDB | Msa0757720

M. sativa cultivar zhongmu-4 / Msa0757720

KEGG: K00234
GO: GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009061 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072350 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204
PFAM: PF00890.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757720	sp\|O82663\|SDHA1_ARATH	88.263	639	63	3	1	632	1	634	0.0	1154

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757720	G7KDJ3	98.892	632	1	2	1	632	1	626	0.0	1295

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017320	Msa0757720	0.806912	6.533718e-50	-8.615850e-47
Msa0072170	Msa0757720	0.845796	3.247899e-59	-8.615850e-47
Msa0111080	Msa0757720	0.800050	1.728438e-48	-8.615850e-47
Msa0120540	Msa0757720	0.843290	1.535033e-58	-8.615850e-47
Msa0142500	Msa0757720	0.807383	5.192116e-50	-8.615850e-47
Msa0171980	Msa0757720	0.828201	1.025329e-54	-8.615850e-47
Msa0189610	Msa0757720	0.807927	3.980317e-50	-8.615850e-47
Msa0194720	Msa0757720	0.821806	3.319884e-53	-8.615850e-47
Msa0220080	Msa0757720	0.808591	2.872330e-50	-8.615850e-47
Msa0229360	Msa0757720	0.811655	6.282042e-51	-8.615850e-47

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757720	MtrunA17_Chr5g0403941	98.892	632	1	2	1	632	1	626	0.0	1295
Msa0757720	MtrunA17_Chr6g0450691	33.679	579	313	18	43	594	122	656	2.66e-78	262

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0757720	AT5G66760.1	88.263	639	63	3	1	632	1	634	0.0	1154
Msa0757720	AT2G18450.1	85.803	641	73	4	1	632	1	632	0.0	1119
Msa0757720	AT5G14760.1	32.953	613	346	15	5	592	47	619	9.98e-82	271

Showing 1 to 3 of 3 entries

Previous1Next

Find 192 sgRNAs with CRISPR-Local

Find 618 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGATGCAGTTGTGGT+AGG	0.635444	5_2:+12678898	Msa0757720:CDS
AACAAAATAACACAAATATG+GGG	0.636493	5_2:+12687124	Msa0757720:three_prime_UTR
AACTAACCGTGAAGTCCTCA+CGG	0.544443	5_2:-12684340	None:intergenic
AAGCAGCTTGGAAACGATGC+AGG	0.464061	5_2:-12681427	None:intergenic
AAGCCTTTAGAGAAGGATGC+TGG	0.580540	5_2:+12683813	Msa0757720:CDS
AAGTGGATGAAACACACTTT+GGG	0.427082	5_2:+12684455	Msa0757720:CDS
AATACACACGAGCCTTAGGA+GGG	0.626806	5_2:-12686751	None:intergenic
AATCCAGGAACTAATGCATC+TGG	0.422975	5_2:-12683569	None:intergenic
AATGCCATGGCTGCCCGTGC+TGG	0.295116	5_2:+12681613	Msa0757720:CDS
AATTCTTAGGAATAGTGAGG+GGG	0.709470	5_2:+12681949	Msa0757720:CDS

Showing 1 to 10 of 192 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTATTTATGTTGTGAGGGT+TGG	-	chr5_2:12678532-12678551	None:intergenic	30.0%
ATCATATTTATGATCCACGA+CGG	-	chr5_2:12678887-12678906	None:intergenic	30.0%
TCATAAATATGATGCAGTTG+TGG	+	chr5_2:12678894-12678913	Msa0757720:CDS	30.0%
TTCAAAAGATCCTGCAAATA+GGG	-	chr5_2:12679283-12679302	None:intergenic	30.0%
ATTCAAAAGATCCTGCAAAT+AGG	-	chr5_2:12679284-12679303	None:intergenic	30.0%
AATGCGAGTTAAATGTAAAG+TGG	+	chr5_2:12679349-12679368	Msa0757720:intron	30.0%
TAAACAAAGATCCCATCTTA+CGG	+	chr5_2:12679826-12679845	Msa0757720:intron	30.0%
TGAATTGATAGGGATATTTG+GGG	-	chr5_2:12680056-12680075	None:intergenic	30.0%
CTGAATTGATAGGGATATTT+GGG	-	chr5_2:12680057-12680076	None:intergenic	30.0%
TCTGAATTGATAGGGATATT+TGG	-	chr5_2:12680058-12680077	None:intergenic	30.0%

Showing 1 to 10 of 618 entries

Previous1 2 3 4 5…62Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	12678471	12687249	12678471	ID=Msa0757720;Name=Msa0757720
chr5_2	mRNA	12678471	12687249	12678471	ID=Msa0757720-mRNA-1;Parent=Msa0757720;Name=Msa0757720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=191\|0.93\|0.93\|1\|1\|1\|16\|474\|632
chr5_2	exon	12678471	12678757	12678471	ID=Msa0757720-mRNA-1:exon:5635;Parent=Msa0757720-mRNA-1
chr5_2	exon	12678871	12679029	12678871	ID=Msa0757720-mRNA-1:exon:5636;Parent=Msa0757720-mRNA-1
chr5_2	exon	12680379	12680466	12680379	ID=Msa0757720-mRNA-1:exon:5637;Parent=Msa0757720-mRNA-1
chr5_2	exon	12680821	12680967	12680821	ID=Msa0757720-mRNA-1:exon:5638;Parent=Msa0757720-mRNA-1
chr5_2	exon	12681054	12681194	12681054	ID=Msa0757720-mRNA-1:exon:5639;Parent=Msa0757720-mRNA-1
chr5_2	exon	12681384	12681469	12681384	ID=Msa0757720-mRNA-1:exon:5640;Parent=Msa0757720-mRNA-1
chr5_2	exon	12681556	12681648	12681556	ID=Msa0757720-mRNA-1:exon:5641;Parent=Msa0757720-mRNA-1
chr5_2	exon	12681747	12681810	12681747	ID=Msa0757720-mRNA-1:exon:5642;Parent=Msa0757720-mRNA-1
chr5_2	exon	12681930	12682073	12681930	ID=Msa0757720-mRNA-1:exon:5643;Parent=Msa0757720-mRNA-1
chr5_2	exon	12682626	12682813	12682626	ID=Msa0757720-mRNA-1:exon:5644;Parent=Msa0757720-mRNA-1
chr5_2	exon	12683545	12683734	12683545	ID=Msa0757720-mRNA-1:exon:5645;Parent=Msa0757720-mRNA-1
chr5_2	exon	12683802	12683972	12683802	ID=Msa0757720-mRNA-1:exon:5646;Parent=Msa0757720-mRNA-1
chr5_2	exon	12684068	12684137	12684068	ID=Msa0757720-mRNA-1:exon:5647;Parent=Msa0757720-mRNA-1
chr5_2	exon	12684235	12684355	12684235	ID=Msa0757720-mRNA-1:exon:5648;Parent=Msa0757720-mRNA-1
chr5_2	exon	12684440	12684477	12684440	ID=Msa0757720-mRNA-1:exon:5649;Parent=Msa0757720-mRNA-1
chr5_2	exon	12686673	12687249	12686673	ID=Msa0757720-mRNA-1:exon:5650;Parent=Msa0757720-mRNA-1
chr5_2	five_prime_UTR	12678471	12678661	12678471	ID=Msa0757720-mRNA-1:five_prime_utr;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12678662	12678757	12678662	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12678871	12679029	12678871	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12680379	12680466	12680379	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12680821	12680967	12680821	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12681054	12681194	12681054	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12681384	12681469	12681384	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12681556	12681648	12681556	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12681747	12681810	12681747	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12681930	12682073	12681930	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12682626	12682813	12682626	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12683545	12683734	12683545	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12683802	12683972	12683802	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12684068	12684137	12684068	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12684235	12684355	12684235	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12684440	12684477	12684440	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	CDS	12686673	12686775	12686673	ID=Msa0757720-mRNA-1:cds;Parent=Msa0757720-mRNA-1
chr5_2	three_prime_UTR	12686776	12687249	12686776	ID=Msa0757720-mRNA-1:three_prime_utr;Parent=Msa0757720-mRNA-1

Gene Sequence

>Msa0757720

ATGTGGCGTTGCGTCGCTCGTGGACTTCGCGTTCCACGTTCTTCTAACAGATCCTCCAATAACTCTCTCGGATCTCATCTTTCTAGATTCTTCTCCAGCGAGTCTTACACCGTCGTGGATCATAAATATGATGCAGTTGTGGTAGGTGCTGGTGGTGCTGGATTAAGAGCTGCTATTGGACTTTCTGAACATGGATTCAATACTGCTTGTATTACCAAGCTTTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGCATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTACGACACTGTCAAAGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCGGTTATTGAACTAGAGAATTATGGATTGCCTTTTTCTCGAACAGAGGATGGAAGAATATATCAGCGTGCATTTGGTGGTCAGAGCTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGTTGCGCATGCGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAGGCTATGAGACACAATACACAGTTTTTTGTGGAATATTTTGCCTTAGATCTTATAATGAATAGTGATGGTAGTTGCCAAGGAGTGATTGCCTTAAACATGGAGGATGGAACCCTGCATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACTGGGGGTTATGGTAGAGCGTACTTCTCAGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCCATGGCTGCCCGTGCTGGGATCGGACTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACGGGTATATATGGAGCAGGTTGCCTTATAACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGGGAGCGGTTTATGGAACGATATGCTCCTACAGCAAAGGATCTTGCATCTCGAGATGTAGTTTCAAGATCGATGACTATGGAGATCCGGGAAGGACGTGGTGTAGGACCTGAGAAAGATCACATCTATCTACACTTGAATCATCTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCAACTGTGCATTATAACATGGGTGGCATTCCCACAAATCATCATGGAGAGGTGGTTACCATTAAAGGAGACGATCCAGATGCATTAGTTCCTGGATTGATGGCTGCTGGGGAAGCAGCCTGTGCATCAGTTCATGGTGCCAACAGACTTGGTGCAAATTCACTTTTGGATATTGTTGTTTTCGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATTCATAAGCCAGGCAAGATTCTTTCCAGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGCCAGAAAACGATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCTACTTCAAAAATTCGGTTGAATATGCAAAAAGTAATGCAAAATAATGCTGCTGTATTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGTTTCCATGATGTCAAGGTTGAAGACAGAAGTTTGATATGGAACTCCGACTTGATCGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCGTCACAATGCACTCTGCAGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAGGACTTCACGACAAGAGATGATGAGAAGTGGATGAAACACACTTTGGGATTCTGGGAGAACGAGAAGGTCCGATTGGATTACAGGCCTGTGCATTTGAATACATTGGATGATGAGGTTGAATCATTCCCTCCTAAGGCTCGTGTGTATTAA

Protein sequence

>Msa0757720

MWRCVARGLRVPRSSNRSSNNSLGSHLSRFFSSESYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLIMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGIGLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDALVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHKPGKILSREKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQKVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVKVEDRSLIWNSDLIETIELENLLINACVTMHSAEARKESRGAHAREDFTTRDDEKWMKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY*