Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220080 | XP_003597087.1 | 96.618 | 414 | 13 | 1 | 1 | 413 | 1 | 414 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220080 | sp|Q9M0Y3|ENT3_ARATH | 70.416 | 409 | 117 | 3 | 5 | 411 | 8 | 414 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220080 | G7IRM9 | 96.618 | 414 | 13 | 1 | 1 | 413 | 1 | 414 | 0.0 | 807 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017320 | Msa0220080 | 0.808789 | 2.606530e-50 | -8.615850e-47 |
| Msa0036370 | Msa0220080 | 0.805213 | 1.487642e-49 | -8.615850e-47 |
| Msa0043730 | Msa0220080 | 0.826744 | 2.293310e-54 | -8.615850e-47 |
| Msa0057370 | Msa0220080 | 0.804223 | 2.394283e-49 | -8.615850e-47 |
| Msa0090390 | Msa0220080 | 0.807454 | 5.015200e-50 | -8.615850e-47 |
| Msa0100800 | Msa0220080 | 0.804593 | 2.005692e-49 | -8.615850e-47 |
| Msa0220080 | Msa0229360 | 0.815256 | 1.014572e-51 | -8.615850e-47 |
| Msa0220080 | Msa0241740 | 0.826646 | 2.420528e-54 | -8.615850e-47 |
| Msa0220080 | Msa0252240 | 0.817746 | 2.809925e-52 | -8.615850e-47 |
| Msa0220080 | Msa0261360 | 0.888677 | 4.773415e-73 | -8.615850e-47 |
| Msa0220080 | Msa0265160 | 0.846748 | 1.787514e-59 | -8.615850e-47 |
| Msa0220080 | Msa0304100 | 0.804644 | 1.956571e-49 | -8.615850e-47 |
| Msa0220080 | Msa0320430 | 0.801149 | 1.031732e-48 | -8.615850e-47 |
| Msa0220080 | Msa0340690 | 0.924260 | 8.937015e-90 | -8.615850e-47 |
| Msa0220080 | Msa0340710 | 0.924546 | 6.100679e-90 | -8.615850e-47 |
| Msa0220080 | Msa0378380 | 0.806352 | 8.576620e-50 | -8.615850e-47 |
| Msa0220080 | Msa0387370 | 0.801371 | 9.294418e-49 | -8.615850e-47 |
| Msa0220080 | Msa0517490 | 0.800183 | 1.623897e-48 | -8.615850e-47 |
| Msa0220080 | Msa0527910 | 0.803905 | 2.789009e-49 | -8.615850e-47 |
| Msa0220080 | Msa0530100 | 0.801227 | 9.944699e-49 | -8.615850e-47 |
| Msa0220080 | Msa0534410 | 0.812420 | 4.277638e-51 | -8.615850e-47 |
| Msa0220080 | Msa0537770 | 0.805438 | 1.334905e-49 | -8.615850e-47 |
| Msa0220080 | Msa0545290 | 0.814553 | 1.453317e-51 | -8.615850e-47 |
| Msa0220080 | Msa0582280 | 0.858784 | 6.492467e-63 | -8.615850e-47 |
| Msa0220080 | Msa0590650 | 0.808440 | 3.094494e-50 | -8.615850e-47 |
| Msa0220080 | Msa0597000 | 0.838789 | 2.334030e-57 | -8.615850e-47 |
| Msa0220080 | Msa0600890 | 0.818323 | 2.081251e-52 | -8.615850e-47 |
| Msa0220080 | Msa0626850 | 0.812644 | 3.821495e-51 | -8.615850e-47 |
| Msa0220080 | Msa0630950 | 0.801221 | 9.972818e-49 | -8.615850e-47 |
| Msa0220080 | Msa0646130 | 0.805030 | 1.625469e-49 | -8.615850e-47 |
| Msa0220080 | Msa0664970 | 0.819759 | 9.811649e-53 | -8.615850e-47 |
| Msa0220080 | Msa0669190 | 0.815899 | 7.299002e-52 | -8.615850e-47 |
| Msa0220080 | Msa0679810 | 0.812066 | 5.111708e-51 | -8.615850e-47 |
| Msa0220080 | Msa0720370 | 0.809285 | 2.041010e-50 | -8.615850e-47 |
| Msa0220080 | Msa0757720 | 0.808591 | 2.872330e-50 | -8.615850e-47 |
| Msa0220080 | Msa0861830 | 0.814769 | 1.301500e-51 | -8.615850e-47 |
| Msa0220080 | Msa0945120 | 0.807535 | 4.820182e-50 | -8.615850e-47 |
| Msa0220080 | Msa0951400 | 0.816407 | 5.617685e-52 | -8.615850e-47 |
| Msa0220080 | Msa1021510 | 0.806514 | 7.926115e-50 | -8.615850e-47 |
| Msa0220080 | Msa1051730 | 0.825265 | 5.150161e-54 | -8.615850e-47 |
| Msa0220080 | Msa1105500 | 0.801514 | 8.685256e-49 | -8.615850e-47 |
| Msa0220080 | Msa1172130 | -0.820305 | 7.356154e-53 | -8.615850e-47 |
| Msa0220080 | Msa1198880 | 0.802367 | 5.801484e-49 | -8.615850e-47 |
| Msa0220080 | Msa1233950 | 0.813374 | 2.643642e-51 | -8.615850e-47 |
| Msa0220080 | Msa1253810 | 0.809477 | 1.855939e-50 | -8.615850e-47 |
| Msa0220080 | Msa1293590 | 0.809387 | 1.940216e-50 | -8.615850e-47 |
| Msa0220080 | Msa1296300 | 0.815622 | 8.413309e-52 | -8.615850e-47 |
| Msa0220080 | Msa1363700 | 0.819632 | 1.049041e-52 | -8.615850e-47 |
| Msa0220080 | Msa1393800 | 0.803254 | 3.806291e-49 | -8.615850e-47 |
| Msa0220080 | Msa1435400 | 0.801672 | 8.063060e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220080 | MtrunA17_Chr2g0323381 | 96.618 | 414 | 13 | 1 | 1 | 413 | 1 | 414 | 0.0 | 807 |
| Msa0220080 | MtrunA17_Chr4g0022871 | 81.687 | 415 | 73 | 2 | 1 | 413 | 1 | 414 | 0.0 | 688 |
| Msa0220080 | MtrunA17_Chr4g0022861 | 75.879 | 398 | 95 | 1 | 17 | 413 | 1 | 398 | 0.0 | 624 |
| Msa0220080 | MtrunA17_Chr2g0280991 | 68.873 | 408 | 124 | 3 | 7 | 411 | 14 | 421 | 0.0 | 566 |
| Msa0220080 | MtrunA17_Chr2g0280971 | 68.059 | 407 | 128 | 2 | 7 | 411 | 35 | 441 | 0.0 | 561 |
| Msa0220080 | MtrunA17_Chr4g0022801 | 72.222 | 396 | 81 | 1 | 47 | 413 | 10 | 405 | 0.0 | 556 |
| Msa0220080 | MtrunA17_Chr8g0335821 | 60.606 | 363 | 140 | 2 | 52 | 411 | 2 | 364 | 8.59e-143 | 411 |
| Msa0220080 | MtrunA17_Chr1g0184961 | 70.079 | 254 | 63 | 3 | 47 | 292 | 104 | 352 | 7.12e-118 | 347 |
| Msa0220080 | MtrunA17_Chr4g0020331 | 32.178 | 404 | 234 | 12 | 21 | 409 | 37 | 415 | 3.07e-50 | 174 |
| Msa0220080 | MtrunA17_Chr2g0280961 | 65.873 | 126 | 42 | 1 | 243 | 367 | 106 | 231 | 3.13e-49 | 166 |
| Msa0220080 | MtrunA17_Chr2g0280961 | 56.180 | 89 | 39 | 0 | 52 | 140 | 2 | 90 | 3.36e-26 | 105 |
| Msa0220080 | MtrunA17_Chr3g0103741 | 30.424 | 401 | 251 | 8 | 18 | 409 | 42 | 423 | 5.48e-42 | 153 |
| Msa0220080 | MtrunA17_Chr4g0063911 | 28.706 | 425 | 255 | 12 | 1 | 409 | 6 | 398 | 6.72e-39 | 144 |
| Msa0220080 | MtrunA17_Chr1g0184971 | 74.603 | 63 | 16 | 0 | 295 | 357 | 2 | 64 | 1.08e-27 | 105 |
| Msa0220080 | MtrunA17_Chr4g0022811 | 76.190 | 42 | 10 | 0 | 5 | 46 | 3 | 44 | 1.75e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0220080 | AT4G05120.1 | 70.416 | 409 | 117 | 3 | 5 | 411 | 8 | 414 | 0.0 | 596 |
| Msa0220080 | AT4G05120.2 | 70.416 | 409 | 117 | 3 | 5 | 411 | 8 | 414 | 0.0 | 596 |
| Msa0220080 | AT4G05110.3 | 67.482 | 409 | 129 | 3 | 5 | 411 | 8 | 414 | 0.0 | 567 |
| Msa0220080 | AT4G05110.1 | 67.482 | 409 | 129 | 3 | 5 | 411 | 8 | 414 | 0.0 | 567 |
| Msa0220080 | AT4G05110.2 | 67.237 | 409 | 130 | 3 | 5 | 411 | 8 | 414 | 0.0 | 566 |
| Msa0220080 | AT4G05140.1 | 65.931 | 408 | 138 | 1 | 5 | 411 | 8 | 415 | 0.0 | 559 |
| Msa0220080 | AT4G05130.1 | 64.563 | 412 | 140 | 4 | 5 | 413 | 8 | 416 | 0.0 | 545 |
| Msa0220080 | AT3G09990.1 | 63.235 | 408 | 148 | 2 | 8 | 413 | 10 | 417 | 0.0 | 525 |
| Msa0220080 | AT1G61630.1 | 61.244 | 418 | 151 | 4 | 1 | 411 | 1 | 414 | 2.85e-177 | 501 |
| Msa0220080 | AT1G70330.1 | 31.477 | 413 | 238 | 9 | 16 | 409 | 64 | 450 | 3.21e-47 | 168 |
| Msa0220080 | AT1G02630.1 | 29.056 | 413 | 252 | 10 | 5 | 409 | 10 | 389 | 1.12e-45 | 162 |
| Msa0220080 | AT1G02630.2 | 27.751 | 209 | 147 | 4 | 5 | 211 | 10 | 216 | 2.95e-21 | 94.7 |
Find 114 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTGAAATTCTTGAAAT+TGG | 0.116609 | 2_1:-68106097 | Msa0220080:CDS |
| GTGCATTAACCTCTGCTTTA+AGG | 0.117350 | 2_1:-68107018 | Msa0220080:CDS |
| TTTCTCCATGGTAGATTTAT+AGG | 0.187275 | 2_1:-68105333 | Msa0220080:three_prime_UTR |
| GACTCTTCCCTCTTCCTTCT+TGG | 0.207482 | 2_1:-68109704 | Msa0220080:five_prime_UTR |
| TTACTACATTTACTTGTTTC+CGG | 0.228601 | 2_1:-68108605 | Msa0220080:intron |
| GAAAGAAATAGTACTTCTTT+AGG | 0.270591 | 2_1:+68106595 | None:intergenic |
| ATTTCTATGTAATTTCAAAA+TGG | 0.282630 | 2_1:-68105201 | Msa0220080:three_prime_UTR |
| AGCAGCATTTGATAATTCTA+AGG | 0.310431 | 2_1:-68106984 | Msa0220080:CDS |
| GGGAAAATATGCTGCAATAT+TGG | 0.315284 | 2_1:-68108689 | Msa0220080:CDS |
| GATAATGTTGACATCATTCT+TGG | 0.317000 | 2_1:-68105980 | Msa0220080:CDS |
| ATCTGCACCCAAAGGTTATA+AGG | 0.329152 | 2_1:-68105920 | Msa0220080:intron |
| GTACTTCTTTAGGTATTGTT+TGG | 0.329362 | 2_1:+68106605 | None:intergenic |
| AGTTAAGTGGCACAACAAAA+AGG | 0.343110 | 2_1:-68105456 | Msa0220080:three_prime_UTR |
| TAATTTCAAAATGGCTGTAT+TGG | 0.343524 | 2_1:-68105192 | Msa0220080:three_prime_UTR |
| CAAAAGTCAATACTAGATTA+AGG | 0.350479 | 2_1:-68107818 | Msa0220080:CDS |
| ATATTGGTATGCTTCCTTCT+TGG | 0.358786 | 2_1:-68108673 | Msa0220080:CDS |
| ACACAAAATGCATTGAAGTA+TGG | 0.361696 | 2_1:-68105237 | Msa0220080:three_prime_UTR |
| CTAGACTGGTTGTGGTTGAT+AGG | 0.364036 | 2_1:-68105597 | Msa0220080:CDS |
| ATAGTGTCAATGCATAAATT+AGG | 0.364083 | 2_1:+68106410 | None:intergenic |
| AAGCTCAAAGAATGTTGATA+TGG | 0.364975 | 2_1:+68106747 | None:intergenic |
| AGGTCTCACCTTATAACCTT+TGG | 0.376157 | 2_1:+68105912 | None:intergenic |
| TACAATGTGTGGGATCTAAT+AGG | 0.376699 | 2_1:-68106132 | Msa0220080:CDS |
| TAGCTGACCTGAATGAATTC+TGG | 0.378851 | 2_1:+68107529 | None:intergenic |
| GATACCGGAGCACATAGTTT+AGG | 0.399627 | 2_1:-68106361 | Msa0220080:CDS |
| GGTCTCACCTTATAACCTTT+GGG | 0.400024 | 2_1:+68105913 | None:intergenic |
| AAGATCAGCTGAAACCGTTT+TGG | 0.400371 | 2_1:+68106642 | None:intergenic |
| CTGTTGGTGTTGTTTCTACT+AGG | 0.406878 | 2_1:-68105642 | Msa0220080:CDS |
| GTACGGTAGTATTTCACAAT+TGG | 0.413573 | 2_1:+68106685 | None:intergenic |
| ATAATGTTGACATCATTCTT+GGG | 0.414131 | 2_1:-68105979 | Msa0220080:CDS |
| TAGTTGGATTTAGCAACATC+TGG | 0.417970 | 2_1:-68107661 | Msa0220080:CDS |
| GGGTCCAGAACAAAATGCTT+TGG | 0.429540 | 2_1:-68105670 | Msa0220080:CDS |
| GTATGCTTCCTTCTTGGCAA+TGG | 0.430207 | 2_1:-68108667 | Msa0220080:CDS |
| TCGCAATTTAGAACTATAAT+CGG | 0.430625 | 2_1:+68107504 | None:intergenic |
| CATGTTCAAGGTGGAATGAT+TGG | 0.433600 | 2_1:-68107571 | Msa0220080:CDS |
| CATGAAGCCAGAATTCATTC+AGG | 0.440760 | 2_1:-68107536 | Msa0220080:CDS |
| GGTCCAGAACAAAATGCTTT+GGG | 0.444913 | 2_1:-68105669 | Msa0220080:CDS |
| ACTAGATTAAGGAACCTGTT+TGG | 0.445916 | 2_1:-68107807 | Msa0220080:CDS |
| TCTCAATAAGCGCAAACTAC+AGG | 0.448671 | 2_1:-68105559 | Msa0220080:three_prime_UTR |
| TACAGGAATATTTGTGATTG+AGG | 0.449567 | 2_1:-68105542 | Msa0220080:three_prime_UTR |
| AGAGATATGATTTAGTTAAG+TGG | 0.451797 | 2_1:-68105469 | Msa0220080:three_prime_UTR |
| TGCTATATTGTCTTATAATG+AGG | 0.452571 | 2_1:-68107841 | Msa0220080:CDS |
| GTATCTTCAGACAGAAATCC+AGG | 0.455042 | 2_1:+68106379 | None:intergenic |
| CTAGTAGAAACAACACCAAC+AGG | 0.458306 | 2_1:+68105643 | None:intergenic |
| TCTAAGGATGGTCTTAGAAA+AGG | 0.472918 | 2_1:-68106968 | Msa0220080:CDS |
| TGTGCAATTAGTGGTGCCTT+TGG | 0.477018 | 2_1:-68107607 | Msa0220080:CDS |
| TGCAGAATTATCATCCCTCC+AGG | 0.479683 | 2_1:-68107905 | Msa0220080:intron |
| GCAAGTGTTCCAACTGCAAA+TGG | 0.482568 | 2_1:+68107861 | None:intergenic |
| GGGTTACACTAGACTGGTTG+TGG | 0.484518 | 2_1:-68105605 | Msa0220080:CDS |
| ACTGCAAAGTATGGTGATCA+AGG | 0.485522 | 2_1:-68106009 | Msa0220080:CDS |
| ATTGGTATATGTGCAATTAG+TGG | 0.486598 | 2_1:-68107616 | Msa0220080:CDS |
| GTGTCCTTTATACAAAATGA+AGG | 0.493763 | 2_1:-68105428 | Msa0220080:three_prime_UTR |
| TCTGCGCTTTAGTGGTTCAT+CGG | 0.494479 | 2_1:-68105153 | Msa0220080:three_prime_UTR |
| TCAGCTGATCTTGCAGCTGG+TGG | 0.503591 | 2_1:-68106631 | Msa0220080:CDS |
| AAAGACATCCATTGCCAAGA+AGG | 0.509411 | 2_1:+68108659 | None:intergenic |
| GTTTCAGCTGATCTTGCAGC+TGG | 0.510600 | 2_1:-68106634 | Msa0220080:CDS |
| TGTCCTTTATACAAAATGAA+GGG | 0.512634 | 2_1:-68105427 | Msa0220080:three_prime_UTR |
| GTGTTCCAACTGCAAATGGC+TGG | 0.520973 | 2_1:+68107865 | None:intergenic |
| TGTAATTAACCTTAAAGCAG+AGG | 0.522589 | 2_1:+68107009 | None:intergenic |
| TTGCAGGGGTTACACTAGAC+TGG | 0.523837 | 2_1:-68105611 | Msa0220080:CDS |
| GTGTTTAGATTAATATTCAA+AGG | 0.528049 | 2_1:-68105096 | Msa0220080:three_prime_UTR |
| ATTTCAAGAATTTCAAGAGT+GGG | 0.530371 | 2_1:+68106100 | None:intergenic |
| GATTTAGCAACATCTGGTAA+AGG | 0.531613 | 2_1:-68107655 | Msa0220080:CDS |
| CAAACATGAACACGCCAAGA+AGG | 0.542626 | 2_1:+68109690 | None:intergenic |
| ACATCTGGTAAAGGAGGACT+TGG | 0.542893 | 2_1:-68107646 | Msa0220080:CDS |
| ACAAACAGTGAGGTAACCAT+TGG | 0.544603 | 2_1:+68105951 | None:intergenic |
| TTTGCAGTGAAATAAAATGC+TGG | 0.546823 | 2_1:+68106024 | None:intergenic |
| TGTCTTTCTCAGCACTTCTG+TGG | 0.546855 | 2_1:-68109669 | Msa0220080:five_prime_UTR |
| GCATAAACCTCTAGACGTGT+TGG | 0.547583 | 2_1:+68108803 | None:intergenic |
| GGATTTCTGTCTGAAGATAC+CGG | 0.548527 | 2_1:-68106376 | Msa0220080:CDS |
| GTATAATAGAGATTAGTTCA+AGG | 0.548918 | 2_1:+68109644 | None:intergenic |
| GTTGCAGATGCTCATGTTCA+AGG | 0.549362 | 2_1:-68107583 | Msa0220080:CDS |
| TGTGGTTGATAGGCAAAGGT+TGG | 0.549746 | 2_1:-68105587 | Msa0220080:CDS |
| CAAAGTATGGTGATCAAGGT+TGG | 0.550801 | 2_1:-68106005 | Msa0220080:CDS |
| GCATTTGATAATTCTAAGGA+TGG | 0.554074 | 2_1:-68106980 | Msa0220080:CDS |
| TCATTCTTGGGGCTATCCAA+TGG | 0.554884 | 2_1:-68105967 | Msa0220080:CDS |
| TGCACACAAACAAGAGAGGA+AGG | 0.556796 | 2_1:-68106482 | Msa0220080:CDS |
| TTGGTGTTGTTTCTACTAGG+AGG | 0.562464 | 2_1:-68105639 | Msa0220080:CDS |
| TGAACACGCCAAGAAGGAAG+AGG | 0.564741 | 2_1:+68109696 | None:intergenic |
| ACAAGAGAGGAAGGGAAACA+AGG | 0.569413 | 2_1:-68106473 | Msa0220080:CDS |
| TGTTCCTAAACTATGTGCTC+CGG | 0.571762 | 2_1:+68106357 | None:intergenic |
| GTATACCAGCCATTTGCAGT+TGG | 0.574201 | 2_1:-68107870 | Msa0220080:CDS |
| TAAACCTCTAGACGTGTTGG+AGG | 0.581439 | 2_1:+68108806 | None:intergenic |
| AGCATCAGAAGGATCCAAAA+CGG | 0.581586 | 2_1:-68106656 | Msa0220080:CDS |
| CTCCATGGTAGATTTATAGG+AGG | 0.592906 | 2_1:-68105330 | Msa0220080:three_prime_UTR |
| TTTATTATTACGCTTGGACA+TGG | 0.598221 | 2_1:+68105296 | None:intergenic |
| TAATGTTGACATCATTCTTG+GGG | 0.600627 | 2_1:-68105978 | Msa0220080:CDS |
| AATGAATTCTGGCTTCATGT+AGG | 0.600985 | 2_1:+68107540 | None:intergenic |
| TGAGCCTCCAACACGTCTAG+AGG | 0.604316 | 2_1:-68108810 | Msa0220080:intron |
| GTCCTTTATACAAAATGAAG+GGG | 0.605361 | 2_1:-68105426 | Msa0220080:three_prime_UTR |
| AATTTCAAGAATTTCAAGAG+TGG | 0.605836 | 2_1:+68106099 | None:intergenic |
| GAACACGCCAAGAAGGAAGA+GGG | 0.611432 | 2_1:+68109697 | None:intergenic |
| AAGGAGTGTCTGTTTCTCCA+TGG | 0.611856 | 2_1:-68105345 | Msa0220080:three_prime_UTR |
| TTAGCAACATCTGGTAAAGG+AGG | 0.617570 | 2_1:-68107652 | Msa0220080:CDS |
| TAATTGCAATGTACAATGTG+TGG | 0.621011 | 2_1:-68106143 | Msa0220080:CDS |
| CGTACAAAAGCAGCATCAGA+AGG | 0.622959 | 2_1:-68106667 | Msa0220080:CDS |
| ATGAGCATCTGCAACTCCAA+AGG | 0.623544 | 2_1:+68107591 | None:intergenic |
| AAATGCTTTGGGAAACCTGT+TGG | 0.630835 | 2_1:-68105658 | Msa0220080:CDS |
| AATTGCAATGTACAATGTGT+GGG | 0.632930 | 2_1:-68106142 | Msa0220080:CDS |
| GTTATGACATCTGCACCCAA+AGG | 0.634499 | 2_1:-68105928 | Msa0220080:CDS |
| AATAATTCAAGGCAGAGCCA+TGG | 0.635029 | 2_1:-68108840 | Msa0220080:exon |
| TACCTCCTATAAATCTACCA+TGG | 0.635378 | 2_1:+68105328 | None:intergenic |
| TGGAGGCTCAACGTTGACCA+TGG | 0.638186 | 2_1:+68108823 | None:intergenic |
| AAATGCATTGAAGTATGGTG+AGG | 0.655656 | 2_1:-68105232 | Msa0220080:three_prime_UTR |
| ACAAGTGTAAGCACCCTGGA+GGG | 0.662948 | 2_1:+68107891 | None:intergenic |
| GTATACAAGTGTAAGCACCC+TGG | 0.665189 | 2_1:+68107887 | None:intergenic |
| TGGTTGTGGTTGATAGGCAA+AGG | 0.669026 | 2_1:-68105591 | Msa0220080:CDS |
| GCACACAAACAAGAGAGGAA+GGG | 0.670991 | 2_1:-68106481 | Msa0220080:CDS |
| ATCATGCACACAAACAAGAG+AGG | 0.673529 | 2_1:-68106486 | Msa0220080:CDS |
| GAGCACATAGTTTAGGAACA+TGG | 0.674637 | 2_1:-68106354 | Msa0220080:intron |
| TACAAGTGTAAGCACCCTGG+AGG | 0.676424 | 2_1:+68107890 | None:intergenic |
| TATCTTCAGACAGAAATCCA+GGG | 0.678514 | 2_1:+68106380 | None:intergenic |
| GCAGAATTATCATCCCTCCA+GGG | 0.701785 | 2_1:-68107904 | Msa0220080:intron |
| GCAGATGCTCATGTTCAAGG+TGG | 0.722859 | 2_1:-68107580 | Msa0220080:CDS |
| ATGTCATAACACAAACAGTG+AGG | 0.743595 | 2_1:+68105941 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATTATTAGCTTTTT+AGG | + | chr2_1:68107570-68107589 | None:intergenic | 10.0% |
| !!! | TGTGTATTTTTTAAAATAAA+AGG | - | chr2_1:68109491-68109510 | Msa0220080:intron | 10.0% |
| !! | ATAACAATTAAATTACGTAA+AGG | + | chr2_1:68105283-68105302 | None:intergenic | 15.0% |
| !! | TAATAGAAATTAAAACTTCT+GGG | + | chr2_1:68105432-68105451 | None:intergenic | 15.0% |
| !! | TTAATAGAAATTAAAACTTC+TGG | + | chr2_1:68105433-68105452 | None:intergenic | 15.0% |
| !!! | GAAGTTTTAATTTCTATTAA+TGG | - | chr2_1:68105433-68105452 | Msa0220080:three_prime_UTR | 15.0% |
| !! | TATATGATATCAAAAAATTG+TGG | + | chr2_1:68105578-68105597 | None:intergenic | 15.0% |
| !! | TACATGCATTTATAATAATT+TGG | + | chr2_1:68105739-68105758 | None:intergenic | 15.0% |
| !!! | ATATATATTTCTAGTTATGT+TGG | - | chr2_1:68105911-68105930 | Msa0220080:intron | 15.0% |
| !!! | TTCATTTTTTTTCTTGTTAT+TGG | - | chr2_1:68106135-68106154 | Msa0220080:CDS | 15.0% |
| !! | AATTTATAATTAAGATTGAG+AGG | - | chr2_1:68106378-68106397 | Msa0220080:CDS | 15.0% |
| !! | TATAAATATAAAACTGCATT+GGG | + | chr2_1:68106562-68106581 | None:intergenic | 15.0% |
| !! | ATATAAATATAAAACTGCAT+TGG | + | chr2_1:68106563-68106582 | None:intergenic | 15.0% |
| !!! | GCTAATAATTTTAATTTCTA+TGG | - | chr2_1:68107575-68107594 | Msa0220080:CDS | 15.0% |
| !!! | AATAATTTTAATTTCTATGG+TGG | - | chr2_1:68107578-68107597 | Msa0220080:CDS | 15.0% |
| !!! | ATTAGATGAAATTTTGATTA+TGG | + | chr2_1:68107954-68107973 | None:intergenic | 15.0% |
| !! | AAAATTACCAAAGATTTAAA+AGG | + | chr2_1:68108545-68108564 | None:intergenic | 15.0% |
| !! | TATTATAGTAGTGTTTAATT+TGG | - | chr2_1:68108974-68108993 | Msa0220080:intron | 15.0% |
| !!! | TTTATGTTTTAATTTACTGT+AGG | - | chr2_1:68109164-68109183 | Msa0220080:intron | 15.0% |
| !!! | TTATGTTTTAATTTACTGTA+GGG | - | chr2_1:68109165-68109184 | Msa0220080:intron | 15.0% |
| !! | ATTTCTATGTAATTTCAAAA+TGG | - | chr2_1:68109654-68109673 | Msa0220080:five_prime_UTR | 15.0% |
| !! | TACTTACAAATCAACAAAAA+TGG | + | chr2_1:68105627-68105646 | None:intergenic | 20.0% |
| !! | GATAACTAGAAATATATAAC+TGG | + | chr2_1:68105801-68105820 | None:intergenic | 20.0% |
| !! | AAGTATATAACCTCAATTTA+AGG | + | chr2_1:68105970-68105989 | None:intergenic | 20.0% |
| !! | GATTGAAAAAGAATAATTCA+AGG | - | chr2_1:68106004-68106023 | Msa0220080:CDS | 20.0% |
| !!! | TACTTTTATTTGCTTAAGAA+TGG | - | chr2_1:68106092-68106111 | Msa0220080:CDS | 20.0% |
| !!! | AATTGCACAAATCTATTTTT+TGG | - | chr2_1:68106331-68106350 | Msa0220080:intron | 20.0% |
| !! | AAAACGTAAAACAAATTGTA+GGG | - | chr2_1:68106520-68106539 | Msa0220080:intron | 20.0% |
| !! | ATAAATATAAAACTGCATTG+GGG | + | chr2_1:68106561-68106580 | None:intergenic | 20.0% |
| !!! | TTTTTTCATAACCACTTTTT+TGG | - | chr2_1:68107080-68107099 | Msa0220080:intron | 20.0% |
| !! | ACAATTAGTTGAATAGATAA+AGG | + | chr2_1:68107120-68107139 | None:intergenic | 20.0% |
| !! | ATCAAACATAAACGAAATTA+TGG | + | chr2_1:68107453-68107472 | None:intergenic | 20.0% |
| !! | TTTATGTTTGATTCTATCTT+TGG | - | chr2_1:68107461-68107480 | Msa0220080:intron | 20.0% |
| !! | AAACCAAACATAACAATTTA+TGG | + | chr2_1:68107508-68107527 | None:intergenic | 20.0% |
| !!! | GATTTTTATCGATTTATGTT+AGG | + | chr2_1:68107659-68107678 | None:intergenic | 20.0% |
| !!! | ATTTTACGTTCAATTAATTC+AGG | - | chr2_1:68107710-68107729 | Msa0220080:intron | 20.0% |
| !! | CTAAATAGTATATAGAGTAA+TGG | + | chr2_1:68108047-68108066 | None:intergenic | 20.0% |
| !!! | TATTTCACAATTGGTATTTT+AGG | + | chr2_1:68108164-68108183 | None:intergenic | 20.0% |
| !!! | AGTTGTGCTTATAATTTTTT+AGG | - | chr2_1:68108676-68108695 | Msa0220080:CDS | 20.0% |
| !!! | TATTTACGCTTTAAGAATAT+TGG | + | chr2_1:68109103-68109122 | None:intergenic | 20.0% |
| !! | TTTGGATTTCATATAGTATA+GGG | + | chr2_1:68109132-68109151 | None:intergenic | 20.0% |
| !! | ATTTGGATTTCATATAGTAT+AGG | + | chr2_1:68109133-68109152 | None:intergenic | 20.0% |
| !! | CATAAACATTAATGTGAATT+TGG | + | chr2_1:68109150-68109169 | None:intergenic | 20.0% |
| !! | ATGATTGTAAAAACGAAAAA+TGG | - | chr2_1:68109338-68109357 | Msa0220080:intron | 20.0% |
| !! | TAAAAACGAAAAATGGAAAT+TGG | - | chr2_1:68109345-68109364 | Msa0220080:intron | 20.0% |
| !! | GTATAATAGAGATTAGTTCA+AGG | + | chr2_1:68105214-68105233 | None:intergenic | 25.0% |
| ! | AAGATAATTAGAGAAGAAGA+GGG | + | chr2_1:68105257-68105276 | None:intergenic | 25.0% |
| ! | AAAGATAATTAGAGAAGAAG+AGG | + | chr2_1:68105258-68105277 | None:intergenic | 25.0% |
| ! | CGTAATTTAATTGTTATGCT+TGG | - | chr2_1:68105286-68105305 | Msa0220080:three_prime_UTR | 25.0% |
| ! | CTTGGTATCTTTATTCATTT+AGG | - | chr2_1:68105304-68105323 | Msa0220080:three_prime_UTR | 25.0% |
| ! | CATAAAAGGAAGAAAGATAT+TGG | - | chr2_1:68105349-68105368 | Msa0220080:intron | 25.0% |
| ! | ACTTTGATTCAAAATCTTGA+TGG | + | chr2_1:68105541-68105560 | None:intergenic | 25.0% |
| ! | AACTGTGTACGTAAATTTAA+TGG | - | chr2_1:68105775-68105794 | Msa0220080:intron | 25.0% |
| ! | ATATACTTTCTTGTAGAACT+TGG | - | chr2_1:68105982-68106001 | Msa0220080:CDS | 25.0% |
| ! | TATTTGCTTAAGAATGGAAA+TGG | - | chr2_1:68106098-68106117 | Msa0220080:CDS | 25.0% |
| !!! | TTCTTGTTATTGGTATTCAT+AGG | - | chr2_1:68106145-68106164 | Msa0220080:CDS | 25.0% |
| !!! | TCTTGTTATTGGTATTCATA+GGG | - | chr2_1:68106146-68106165 | Msa0220080:CDS | 25.0% |
| ! | TTACTACATTTACTTGTTTC+CGG | - | chr2_1:68106250-68106269 | Msa0220080:intron | 25.0% |
| ! | AAAGTACACAAATTACATAC+CGG | + | chr2_1:68106272-68106291 | None:intergenic | 25.0% |
| !!! | CTACAATTTGTTTTACGTTT+TGG | + | chr2_1:68106521-68106540 | None:intergenic | 25.0% |
| ! | CAAAACGTAAAACAAATTGT+AGG | - | chr2_1:68106519-68106538 | Msa0220080:intron | 25.0% |
| !! | TTGATAATCTGGAATTCAAT+CGG | + | chr2_1:68106785-68106804 | None:intergenic | 25.0% |
| ! | TTAAATTACACCAACATACA+AGG | + | chr2_1:68106872-68106891 | None:intergenic | 25.0% |
| ! | TGCTATATTGTCTTATAATG+AGG | - | chr2_1:68107014-68107033 | Msa0220080:CDS | 25.0% |
| ! | CAAAAGTCAATACTAGATTA+AGG | - | chr2_1:68107037-68107056 | Msa0220080:intron | 25.0% |
| !! | AAAAAAGAGTATATCCAAAC+AGG | + | chr2_1:68107065-68107084 | None:intergenic | 25.0% |
| ! | TACTATTAACACCAAAAAAG+TGG | + | chr2_1:68107094-68107113 | None:intergenic | 25.0% |
| !!! | TCCAATAAATTTGTTGTAGT+TGG | - | chr2_1:68107178-68107197 | Msa0220080:intron | 25.0% |
| ! | TCCAACTACAACAAATTTAT+TGG | + | chr2_1:68107182-68107201 | None:intergenic | 25.0% |
| !! | TCGCAATTTAGAACTATAAT+CGG | + | chr2_1:68107354-68107373 | None:intergenic | 25.0% |
| ! | TGACCATAAATTGTTATGTT+TGG | - | chr2_1:68107502-68107521 | Msa0220080:intron | 25.0% |
| ! | ATCTATGATACTTACATCTA+TGG | - | chr2_1:68107771-68107790 | Msa0220080:CDS | 25.0% |
| ! | CAATAGCAACAAATAAGAAT+TGG | + | chr2_1:68108001-68108020 | None:intergenic | 25.0% |
| ! | GAAAGAAATAGTACTTCTTT+AGG | + | chr2_1:68108263-68108282 | None:intergenic | 25.0% |
| !! | GATAATAATTTCCCTTTTTC+AGG | - | chr2_1:68108340-68108359 | Msa0220080:intron | 25.0% |
| ! | ATAGTGTCAATGCATAAATT+AGG | + | chr2_1:68108448-68108467 | None:intergenic | 25.0% |
| ! | ATTTCAAGAATTTCAAGAGT+GGG | + | chr2_1:68108758-68108777 | None:intergenic | 25.0% |
| ! | AATTTCAAGAATTTCAAGAG+TGG | + | chr2_1:68108759-68108778 | None:intergenic | 25.0% |
| ! | ACTCTTGAAATTCTTGAAAT+TGG | - | chr2_1:68108758-68108777 | Msa0220080:intron | 25.0% |
| !!! | TTTTATTTCACTGCAAAGTA+TGG | - | chr2_1:68108837-68108856 | Msa0220080:exon | 25.0% |
| ! | ATAATGTTGACATCATTCTT+GGG | - | chr2_1:68108876-68108895 | Msa0220080:intron | 25.0% |
| ! | ACTACTATAATATACTCTCA+AGG | + | chr2_1:68108966-68108985 | None:intergenic | 25.0% |
| ! | TATTCTTAAAGCGTAAATAC+CGG | - | chr2_1:68109104-68109123 | Msa0220080:intron | 25.0% |
| ! | AGAGATATGATTTAGTTAAG+TGG | - | chr2_1:68109386-68109405 | Msa0220080:intron | 25.0% |
| ! | TGTCCTTTATACAAAATGAA+GGG | - | chr2_1:68109428-68109447 | Msa0220080:intron | 25.0% |
| !!! | CCTTTTTTTATTATTACGCT+TGG | + | chr2_1:68109568-68109587 | None:intergenic | 25.0% |
| ! | CCAAGCGTAATAATAAAAAA+AGG | - | chr2_1:68109565-68109584 | Msa0220080:intron | 25.0% |
| ! | TAATTTCAAAATGGCTGTAT+TGG | - | chr2_1:68109663-68109682 | Msa0220080:five_prime_UTR | 25.0% |
| ! | TCTATCTTCCTTTTTGTGTA+TGG | - | chr2_1:68105484-68105503 | Msa0220080:three_prime_UTR | 30.0% |
| TACATCTTGCAAATCAAGTA+TGG | + | chr2_1:68105517-68105536 | None:intergenic | 30.0% | |
| TCTAGAGGTTTATGCTTAAT+TGG | - | chr2_1:68106060-68106079 | Msa0220080:CDS | 30.0% | |
| !!! | TGTTTTACGTTTTGGTTTTG+TGG | + | chr2_1:68106513-68106532 | None:intergenic | 30.0% |
| ! | TGATAATCTGGAATTCAATC+GGG | + | chr2_1:68106784-68106803 | None:intergenic | 30.0% |
| !! | GAAAAGAGGTTTTGATAATC+TGG | + | chr2_1:68106796-68106815 | None:intergenic | 30.0% |
| !!! | TTGTTAACCCATCGATTTTT+CGG | + | chr2_1:68106818-68106837 | None:intergenic | 30.0% |
| ACTTTGATTCCTTTACCATT+AGG | - | chr2_1:68107142-68107161 | Msa0220080:intron | 30.0% | |
| GAAAATCAAAACCATCCTAA+TGG | + | chr2_1:68107160-68107179 | None:intergenic | 30.0% | |
| ATTGGTATATGTGCAATTAG+TGG | - | chr2_1:68107239-68107258 | Msa0220080:intron | 30.0% | |
| ! | TTTTGTATCCATACATCTGT+CGG | + | chr2_1:68107616-68107635 | None:intergenic | 30.0% |
| TGTAATTAACCTTAAAGCAG+AGG | + | chr2_1:68107849-68107868 | None:intergenic | 30.0% | |
| ! | AGCAGCATTTGATAATTCTA+AGG | - | chr2_1:68107871-68107890 | Msa0220080:CDS | 30.0% |
| ! | GCATTTGATAATTCTAAGGA+TGG | - | chr2_1:68107875-68107894 | Msa0220080:CDS | 30.0% |
| AAGCTCAAAGAATGTTGATA+TGG | + | chr2_1:68108111-68108130 | None:intergenic | 30.0% | |
| ! | GTACTTCTTTAGGTATTGTT+TGG | + | chr2_1:68108253-68108272 | None:intergenic | 30.0% |
| TTACCAAAGATTTAAAAGGC+AGG | + | chr2_1:68108541-68108560 | None:intergenic | 30.0% | |
| TTTATCTACAGCAATCCATT+AGG | + | chr2_1:68108621-68108640 | None:intergenic | 30.0% | |
| TAATTGCAATGTACAATGTG+TGG | - | chr2_1:68108712-68108731 | Msa0220080:intron | 30.0% | |
| AATTGCAATGTACAATGTGT+GGG | - | chr2_1:68108713-68108732 | Msa0220080:intron | 30.0% | |
| TTTGCAGTGAAATAAAATGC+TGG | + | chr2_1:68108834-68108853 | None:intergenic | 30.0% | |
| GATAATGTTGACATCATTCT+TGG | - | chr2_1:68108875-68108894 | Msa0220080:intron | 30.0% | |
| TAATGTTGACATCATTCTTG+GGG | - | chr2_1:68108877-68108896 | Msa0220080:intron | 30.0% | |
| !! | AGTAGTGTTTAATTTGGAAC+TGG | - | chr2_1:68108980-68108999 | Msa0220080:intron | 30.0% |
| AGTGGTTGTTCAATCAAAAT+TGG | - | chr2_1:68109042-68109061 | Msa0220080:intron | 30.0% | |
| !! | TTACGCTTTAAGAATATTGG+TGG | + | chr2_1:68109100-68109119 | None:intergenic | 30.0% |
| TTTCATATAGTATAGGGATC+CGG | + | chr2_1:68109126-68109145 | None:intergenic | 30.0% | |
| TACAGGAATATTTGTGATTG+AGG | - | chr2_1:68109313-68109332 | Msa0220080:intron | 30.0% | |
| GTGTCCTTTATACAAAATGA+AGG | - | chr2_1:68109427-68109446 | Msa0220080:intron | 30.0% | |
| GTCCTTTATACAAAATGAAG+GGG | - | chr2_1:68109429-68109448 | Msa0220080:intron | 30.0% | |
| ! | ATCCCCTTCATTTTGTATAA+AGG | + | chr2_1:68109434-68109453 | None:intergenic | 30.0% |
| TTTCTCCATGGTAGATTTAT+AGG | - | chr2_1:68109522-68109541 | Msa0220080:intron | 30.0% | |
| TTTATTATTACGCTTGGACA+TGG | + | chr2_1:68109562-68109581 | None:intergenic | 30.0% | |
| !!! | GCATTTTGTGTTAATTTGCT+GGG | + | chr2_1:68109609-68109628 | None:intergenic | 30.0% |
| !!! | TGCATTTTGTGTTAATTTGC+TGG | + | chr2_1:68109610-68109629 | None:intergenic | 30.0% |
| ACACAAAATGCATTGAAGTA+TGG | - | chr2_1:68109618-68109637 | Msa0220080:intron | 30.0% | |
| GATAGAAGAGCAAAGACTTT+AGG | + | chr2_1:68105470-68105489 | None:intergenic | 35.0% | |
| GTGATAGACCATACACAAAA+AGG | + | chr2_1:68105495-68105514 | None:intergenic | 35.0% | |
| CAGATTGAAGCCTTAAATTG+AGG | - | chr2_1:68105957-68105976 | Msa0220080:CDS | 35.0% | |
| GGGAAAATATGCTGCAATAT+TGG | - | chr2_1:68106166-68106185 | Msa0220080:intron | 35.0% | |
| ATATTGGTATGCTTCCTTCT+TGG | - | chr2_1:68106182-68106201 | Msa0220080:intron | 35.0% | |
| ATAGAGTTCATTGACCACTT+GGG | + | chr2_1:68106687-68106706 | None:intergenic | 35.0% | |
| AAGAACCTGAGTTCAATTTC+TGG | - | chr2_1:68106726-68106745 | Msa0220080:CDS | 35.0% | |
| TTCTACCAGAAATTGAACTC+AGG | + | chr2_1:68106734-68106753 | None:intergenic | 35.0% | |
| ! | CTCTTTTCCGAAAAATCGAT+GGG | - | chr2_1:68106808-68106827 | Msa0220080:intron | 35.0% |
| ACTAGATTAAGGAACCTGTT+TGG | - | chr2_1:68107048-68107067 | Msa0220080:intron | 35.0% | |
| TGATTCCTTTACCATTAGGA+TGG | - | chr2_1:68107146-68107165 | Msa0220080:intron | 35.0% | |
| CAAAACCATCCTAATGGTAA+AGG | + | chr2_1:68107154-68107173 | None:intergenic | 35.0% | |
| TAGTTGGATTTAGCAACATC+TGG | - | chr2_1:68107194-68107213 | Msa0220080:intron | 35.0% | |
| GATTTAGCAACATCTGGTAA+AGG | - | chr2_1:68107200-68107219 | Msa0220080:intron | 35.0% | |
| !! | AATGAATTCTGGCTTCATGT+AGG | + | chr2_1:68107318-68107337 | None:intergenic | 35.0% |
| GCGATTCATAATTGCAATTG+TGG | - | chr2_1:68107370-68107389 | Msa0220080:intron | 35.0% | |
| ATTCAATTCCGACAGATGTA+TGG | - | chr2_1:68107605-68107624 | Msa0220080:CDS | 35.0% | |
| TAAGCGTGAGTTTGATTATG+CGG | + | chr2_1:68107752-68107771 | None:intergenic | 35.0% | |
| ATGTTACAGTCTTTCCTATG+TGG | - | chr2_1:68107800-68107819 | Msa0220080:CDS | 35.0% | |
| ! | TCTAAGGATGGTCTTAGAAA+AGG | - | chr2_1:68107887-68107906 | Msa0220080:CDS | 35.0% |
| GTACGGTAGTATTTCACAAT+TGG | + | chr2_1:68108173-68108192 | None:intergenic | 35.0% | |
| ! | TGAGAAAGTTTGAGACACAT+TGG | + | chr2_1:68108300-68108319 | None:intergenic | 35.0% |
| !!! | AATTTCCCTTTTTCAGGATG+AGG | - | chr2_1:68108346-68108365 | Msa0220080:intron | 35.0% |
| ATGATCCTCATCCTGAAAAA+GGG | + | chr2_1:68108354-68108373 | None:intergenic | 35.0% | |
| ! | TTGACACTATCTATTTTCCC+TGG | - | chr2_1:68108458-68108477 | Msa0220080:intron | 35.0% |
| TATCTTCAGACAGAAATCCA+GGG | + | chr2_1:68108478-68108497 | None:intergenic | 35.0% | |
| ! | CTACCTGCCTTTTAAATCTT+TGG | - | chr2_1:68108535-68108554 | Msa0220080:intron | 35.0% |
| ! | TTTTACGAATCGAAACGACA+AGG | - | chr2_1:68108588-68108607 | Msa0220080:intron | 35.0% |
| TACAATGTGTGGGATCTAAT+AGG | - | chr2_1:68108723-68108742 | Msa0220080:intron | 35.0% | |
| ATGTCATAACACAAACAGTG+AGG | + | chr2_1:68108917-68108936 | None:intergenic | 35.0% | |
| ! | TTAATTTGGAACTGGCTTAC+TGG | - | chr2_1:68108988-68109007 | Msa0220080:intron | 35.0% |
| ! | TAATTTGGAACTGGCTTACT+GGG | - | chr2_1:68108989-68109008 | Msa0220080:intron | 35.0% |
| !! | TTTCCCAAAGCATTTTGTTC+TGG | + | chr2_1:68109192-68109211 | None:intergenic | 35.0% |
| !!! | TACTAGGAGGTATTTTTGCA+GGG | - | chr2_1:68109229-68109248 | Msa0220080:intron | 35.0% |
| AGTTAAGTGGCACAACAAAA+AGG | - | chr2_1:68109399-68109418 | Msa0220080:intron | 35.0% | |
| TACCTCCTATAAATCTACCA+TGG | + | chr2_1:68109530-68109549 | None:intergenic | 35.0% | |
| AAATGCATTGAAGTATGGTG+AGG | - | chr2_1:68109623-68109642 | Msa0220080:intron | 35.0% | |
| ! | TTGAATTTTCTGCGCTTTAG+TGG | - | chr2_1:68109694-68109713 | Msa0220080:five_prime_UTR | 35.0% |
| GTACACTCGTGTGTCATAAA+AGG | - | chr2_1:68105335-68105354 | Msa0220080:three_prime_UTR | 40.0% | |
| ! | GAAGAGCAAAGACTTTAGGA+AGG | + | chr2_1:68105466-68105485 | None:intergenic | 40.0% |
| AATAATTCAAGGCAGAGCCA+TGG | - | chr2_1:68106015-68106034 | Msa0220080:CDS | 40.0% | |
| AAAGACATCCATTGCCAAGA+AGG | + | chr2_1:68106199-68106218 | None:intergenic | 40.0% | |
| ! | GCAATGGATGTCTTTTCTCT+TGG | - | chr2_1:68106204-68106223 | Msa0220080:intron | 40.0% |
| TCGCTAAGCTCAATCTATGT+TGG | + | chr2_1:68106410-68106429 | None:intergenic | 40.0% | |
| AACCAAGAAATTTCCCCAAG+TGG | - | chr2_1:68106670-68106689 | Msa0220080:CDS | 40.0% | |
| TAGAGTTCATTGACCACTTG+GGG | + | chr2_1:68106686-68106705 | None:intergenic | 40.0% | |
| GATAGAGTTCATTGACCACT+TGG | + | chr2_1:68106688-68106707 | None:intergenic | 40.0% | |
| ATCGGGAAGTAAGTAAAGTC+TGG | + | chr2_1:68106767-68106786 | None:intergenic | 40.0% | |
| !!! | CCATCGATTTTTCGGAAAAG+AGG | + | chr2_1:68106810-68106829 | None:intergenic | 40.0% |
| ! | CCTCTTTTCCGAAAAATCGA+TGG | - | chr2_1:68106807-68106826 | Msa0220080:intron | 40.0% |
| ATGTGCTTCTCCTTGTATGT+TGG | - | chr2_1:68106859-68106878 | Msa0220080:intron | 40.0% | |
| TTAGCAACATCTGGTAAAGG+AGG | - | chr2_1:68107203-68107222 | Msa0220080:intron | 40.0% | |
| ! | GGAGGACTTGGAACTTTTAT+TGG | - | chr2_1:68107221-68107240 | Msa0220080:intron | 40.0% |
| CATGTTCAAGGTGGAATGAT+TGG | - | chr2_1:68107284-68107303 | Msa0220080:intron | 40.0% | |
| CATGAAGCCAGAATTCATTC+AGG | - | chr2_1:68107319-68107338 | Msa0220080:intron | 40.0% | |
| TAGCTGACCTGAATGAATTC+TGG | + | chr2_1:68107329-68107348 | None:intergenic | 40.0% | |
| ! | CTGCATTTTACGCGATATCA+AGG | - | chr2_1:68107402-68107421 | Msa0220080:intron | 40.0% |
| ACAGTCTTTCCTATGTGGTT+TGG | - | chr2_1:68107805-68107824 | Msa0220080:CDS | 40.0% | |
| GTGCATTAACCTCTGCTTTA+AGG | - | chr2_1:68107837-68107856 | Msa0220080:CDS | 40.0% | |
| !!! | CTTCTGATGCTGCTTTTGTA+CGG | + | chr2_1:68108190-68108209 | None:intergenic | 40.0% |
| AGCATCAGAAGGATCCAAAA+CGG | - | chr2_1:68108199-68108218 | Msa0220080:intron | 40.0% | |
| ! | AAGATCAGCTGAAACCGTTT+TGG | + | chr2_1:68108216-68108235 | None:intergenic | 40.0% |
| CATGATCCTCATCCTGAAAA+AGG | + | chr2_1:68108355-68108374 | None:intergenic | 40.0% | |
| ATCATGCACACAAACAAGAG+AGG | - | chr2_1:68108369-68108388 | Msa0220080:intron | 40.0% | |
| GTATCTTCAGACAGAAATCC+AGG | + | chr2_1:68108479-68108498 | None:intergenic | 40.0% | |
| GGATTTCTGTCTGAAGATAC+CGG | - | chr2_1:68108479-68108498 | Msa0220080:intron | 40.0% | |
| TGTTCCTAAACTATGTGCTC+CGG | + | chr2_1:68108501-68108520 | None:intergenic | 40.0% | |
| GAGCACATAGTTTAGGAACA+TGG | - | chr2_1:68108501-68108520 | Msa0220080:intron | 40.0% | |
| ACTGCAAAGTATGGTGATCA+AGG | - | chr2_1:68108846-68108865 | Msa0220080:five_prime_UTR | 40.0% | |
| CAAAGTATGGTGATCAAGGT+TGG | - | chr2_1:68108850-68108869 | Msa0220080:five_prime_UTR | 40.0% | |
| ACAAACAGTGAGGTAACCAT+TGG | + | chr2_1:68108907-68108926 | None:intergenic | 40.0% | |
| ATCTGCACCCAAAGGTTATA+AGG | - | chr2_1:68108935-68108954 | Msa0220080:intron | 40.0% | |
| GGTCTCACCTTATAACCTTT+GGG | + | chr2_1:68108945-68108964 | None:intergenic | 40.0% | |
| AGGTCTCACCTTATAACCTT+TGG | + | chr2_1:68108946-68108965 | None:intergenic | 40.0% | |
| ! | AATTTGGAACTGGCTTACTG+GGG | - | chr2_1:68108990-68109009 | Msa0220080:intron | 40.0% |
| ATATCTCGAATGCGTGAATG+CGG | + | chr2_1:68109021-68109040 | None:intergenic | 40.0% | |
| ATTGGATAGTCTAGACCGTT+CGG | - | chr2_1:68109060-68109079 | Msa0220080:intron | 40.0% | |
| !!! | ACCGTTCGGTTTTGATTGAA+CGG | - | chr2_1:68109074-68109093 | Msa0220080:intron | 40.0% |
| GGTCCAGAACAAAATGCTTT+GGG | - | chr2_1:68109186-68109205 | Msa0220080:intron | 40.0% | |
| !! | AAATGCTTTGGGAAACCTGT+TGG | - | chr2_1:68109197-68109216 | Msa0220080:intron | 40.0% |
| CTAGTAGAAACAACACCAAC+AGG | + | chr2_1:68109215-68109234 | None:intergenic | 40.0% | |
| !! | CTGTTGGTGTTGTTTCTACT+AGG | - | chr2_1:68109213-68109232 | Msa0220080:intron | 40.0% |
| !! | TTGGTGTTGTTTCTACTAGG+AGG | - | chr2_1:68109216-68109235 | Msa0220080:intron | 40.0% |
| !!! | CTACTAGGAGGTATTTTTGC+AGG | - | chr2_1:68109228-68109247 | Msa0220080:intron | 40.0% |
| !!! | ACTAGGAGGTATTTTTGCAG+GGG | - | chr2_1:68109230-68109249 | Msa0220080:intron | 40.0% |
| TCTCAATAAGCGCAAACTAC+AGG | - | chr2_1:68109296-68109315 | Msa0220080:intron | 40.0% | |
| CTCCATGGTAGATTTATAGG+AGG | - | chr2_1:68109525-68109544 | Msa0220080:intron | 40.0% | |
| CAAACATGAACACGCCAAGA+AGG | + | chr2_1:68105168-68105187 | None:intergenic | 45.0% | |
| TGTCTTTCTCAGCACTTCTG+TGG | - | chr2_1:68105186-68105205 | Msa0220080:three_prime_UTR | 45.0% | |
| TAAACCTCTAGACGTGTTGG+AGG | + | chr2_1:68106052-68106071 | None:intergenic | 45.0% | |
| GCATAAACCTCTAGACGTGT+TGG | + | chr2_1:68106055-68106074 | None:intergenic | 45.0% | |
| GTATGCTTCCTTCTTGGCAA+TGG | - | chr2_1:68106188-68106207 | Msa0220080:intron | 45.0% | |
| GACCACTTGGGGAAATTTCT+TGG | + | chr2_1:68106675-68106694 | None:intergenic | 45.0% | |
| TGCAGAATTATCATCCCTCC+AGG | - | chr2_1:68106950-68106969 | Msa0220080:intron | 45.0% | |
| GCAGAATTATCATCCCTCCA+GGG | - | chr2_1:68106951-68106970 | Msa0220080:intron | 45.0% | |
| GTATACAAGTGTAAGCACCC+TGG | + | chr2_1:68106971-68106990 | None:intergenic | 45.0% | |
| GTATACCAGCCATTTGCAGT+TGG | - | chr2_1:68106985-68107004 | Msa0220080:CDS | 45.0% | |
| GCAAGTGTTCCAACTGCAAA+TGG | + | chr2_1:68106997-68107016 | None:intergenic | 45.0% | |
| ACATCTGGTAAAGGAGGACT+TGG | - | chr2_1:68107209-68107228 | Msa0220080:intron | 45.0% | |
| TGTGCAATTAGTGGTGCCTT+TGG | - | chr2_1:68107248-68107267 | Msa0220080:intron | 45.0% | |
| ATGAGCATCTGCAACTCCAA+AGG | + | chr2_1:68107267-68107286 | None:intergenic | 45.0% | |
| GTTGCAGATGCTCATGTTCA+AGG | - | chr2_1:68107272-68107291 | Msa0220080:intron | 45.0% | |
| CGTACAAAAGCAGCATCAGA+AGG | - | chr2_1:68108188-68108207 | Msa0220080:intron | 45.0% | |
| TGCACACAAACAAGAGAGGA+AGG | - | chr2_1:68108373-68108392 | Msa0220080:intron | 45.0% | |
| GCACACAAACAAGAGAGGAA+GGG | - | chr2_1:68108374-68108393 | Msa0220080:intron | 45.0% | |
| ACAAGAGAGGAAGGGAAACA+AGG | - | chr2_1:68108382-68108401 | Msa0220080:intron | 45.0% | |
| GATACCGGAGCACATAGTTT+AGG | - | chr2_1:68108494-68108513 | Msa0220080:intron | 45.0% | |
| TACAGCAATCCATTAGGCGT+TGG | + | chr2_1:68108615-68108634 | None:intergenic | 45.0% | |
| TCATTCTTGGGGCTATCCAA+TGG | - | chr2_1:68108888-68108907 | Msa0220080:intron | 45.0% | |
| GTTATGACATCTGCACCCAA+AGG | - | chr2_1:68108927-68108946 | Msa0220080:intron | 45.0% | |
| TATCTCGAATGCGTGAATGC+GGG | + | chr2_1:68109020-68109039 | None:intergenic | 45.0% | |
| TCACGCATTCGAGATATCAG+TGG | - | chr2_1:68109024-68109043 | Msa0220080:intron | 45.0% | |
| GCCGTTCAATCAAAACCGAA+CGG | + | chr2_1:68109078-68109097 | None:intergenic | 45.0% | |
| GGGTCCAGAACAAAATGCTT+TGG | - | chr2_1:68109185-68109204 | Msa0220080:intron | 45.0% | |
| ! | CTAGACTGGTTGTGGTTGAT+AGG | - | chr2_1:68109258-68109277 | Msa0220080:intron | 45.0% |
| !! | TGGTTGTGGTTGATAGGCAA+AGG | - | chr2_1:68109264-68109283 | Msa0220080:intron | 45.0% |
| !! | TGTGGTTGATAGGCAAAGGT+TGG | - | chr2_1:68109268-68109287 | Msa0220080:intron | 45.0% |
| !! | AAGGAGTGTCTGTTTCTCCA+TGG | - | chr2_1:68109510-68109529 | Msa0220080:intron | 45.0% |
| TCTGCGCTTTAGTGGTTCAT+CGG | - | chr2_1:68109702-68109721 | Msa0220080:five_prime_UTR | 45.0% | |
| !!! | ATATATATATATATTCTTTT+TGG | + | chr2_1:68105823-68105842 | None:intergenic | 5.0% |
| !! | GTAATTAAATTATTATAAAT+TGG | + | chr2_1:68106605-68106624 | None:intergenic | 5.0% |
| !!! | AATTTGAAATTAAAATAAAA+TGG | + | chr2_1:68108569-68108588 | None:intergenic | 5.0% |
| GACTCTTCCCTCTTCCTTCT+TGG | - | chr2_1:68105151-68105170 | Msa0220080:three_prime_UTR | 50.0% | |
| GAACACGCCAAGAAGGAAGA+GGG | + | chr2_1:68105161-68105180 | None:intergenic | 50.0% | |
| TGAACACGCCAAGAAGGAAG+AGG | + | chr2_1:68105162-68105181 | None:intergenic | 50.0% | |
| ACAAGTGTAAGCACCCTGGA+GGG | + | chr2_1:68106967-68106986 | None:intergenic | 50.0% | |
| TACAAGTGTAAGCACCCTGG+AGG | + | chr2_1:68106968-68106987 | None:intergenic | 50.0% | |
| GTGTTCCAACTGCAAATGGC+TGG | + | chr2_1:68106993-68107012 | None:intergenic | 50.0% | |
| GCAGATGCTCATGTTCAAGG+TGG | - | chr2_1:68107275-68107294 | Msa0220080:intron | 50.0% | |
| CAGATGCTGCCAAACCACAT+AGG | + | chr2_1:68107817-68107836 | None:intergenic | 50.0% | |
| ! | CTATGTGGTTTGGCAGCATC+TGG | - | chr2_1:68107815-68107834 | Msa0220080:CDS | 50.0% |
| GTTTCAGCTGATCTTGCAGC+TGG | - | chr2_1:68108221-68108240 | Msa0220080:intron | 50.0% | |
| TTGCAGGGGTTACACTAGAC+TGG | - | chr2_1:68109244-68109263 | Msa0220080:intron | 50.0% | |
| ! | GGGTTACACTAGACTGGTTG+TGG | - | chr2_1:68109250-68109269 | Msa0220080:intron | 50.0% |
| TGGAGGCTCAACGTTGACCA+TGG | + | chr2_1:68106035-68106054 | None:intergenic | 55.0% | |
| TGAGCCTCCAACACGTCTAG+AGG | - | chr2_1:68106045-68106064 | Msa0220080:CDS | 55.0% | |
| TCAGCTGATCTTGCAGCTGG+TGG | - | chr2_1:68108224-68108243 | Msa0220080:intron | 55.0% | |
| CGACAAGGACCAACGCCTAA+TGG | - | chr2_1:68108603-68108622 | Msa0220080:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 68105096 | 68109781 | 68105096 | ID=Msa0220080;Name=Msa0220080 |
| chr2_1 | mRNA | 68105096 | 68109781 | 68105096 | ID=Msa0220080-mRNA-1;Parent=Msa0220080;Name=Msa0220080-mRNA-1;_AED=0.14;_eAED=0.14;_QI=181|0.9|0.90|1|0.8|0.63|11|458|413 |
| chr2_1 | exon | 68105096 | 68105365 | 68105096 | ID=Msa0220080-mRNA-1:exon:19299;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68105396 | 68105691 | 68105396 | ID=Msa0220080-mRNA-1:exon:19298;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68105921 | 68106179 | 68105921 | ID=Msa0220080-mRNA-1:exon:19297;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68106355 | 68106515 | 68106355 | ID=Msa0220080-mRNA-1:exon:19296;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68106609 | 68106781 | 68106609 | ID=Msa0220080-mRNA-1:exon:19295;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68106963 | 68107046 | 68106963 | ID=Msa0220080-mRNA-1:exon:19294;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68107518 | 68107680 | 68107518 | ID=Msa0220080-mRNA-1:exon:19293;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68107767 | 68107922 | 68107767 | ID=Msa0220080-mRNA-1:exon:19292;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68108606 | 68108710 | 68108606 | ID=Msa0220080-mRNA-1:exon:19291;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68108811 | 68108879 | 68108811 | ID=Msa0220080-mRNA-1:exon:19290;Parent=Msa0220080-mRNA-1 |
| chr2_1 | exon | 68109637 | 68109781 | 68109637 | ID=Msa0220080-mRNA-1:exon:19289;Parent=Msa0220080-mRNA-1 |
| chr2_1 | five_prime_UTR | 68109637 | 68109781 | 68109637 | ID=Msa0220080-mRNA-1:five_prime_utr;Parent=Msa0220080-mRNA-1 |
| chr2_1 | five_prime_UTR | 68108844 | 68108879 | 68108844 | ID=Msa0220080-mRNA-1:five_prime_utr;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68108811 | 68108843 | 68108811 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68108606 | 68108710 | 68108606 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68107767 | 68107922 | 68107767 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68107518 | 68107680 | 68107518 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68106963 | 68107046 | 68106963 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68106609 | 68106781 | 68106609 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68106355 | 68106515 | 68106355 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68105921 | 68106179 | 68105921 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | CDS | 68105584 | 68105691 | 68105584 | ID=Msa0220080-mRNA-1:cds;Parent=Msa0220080-mRNA-1 |
| chr2_1 | three_prime_UTR | 68105396 | 68105583 | 68105396 | ID=Msa0220080-mRNA-1:three_prime_utr;Parent=Msa0220080-mRNA-1 |
| chr2_1 | three_prime_UTR | 68105096 | 68105365 | 68105096 | ID=Msa0220080-mRNA-1:three_prime_utr;Parent=Msa0220080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
