AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0313740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313740 MtrunA17_Chr2g0283581 97.778 360 8 0 1 360 1 360 0.0 732
Msa0313740 MtrunA17_Chr4g0045951 70.765 366 99 4 1 360 1 364 0.0 536
Msa0313740 MtrunA17_Chr4g0045941 69.101 356 101 2 6 360 5 352 0.0 518
Msa0313740 MtrunA17_Chr2g0325481 64.087 323 114 2 38 359 46 367 4.41e-160 453
Msa0313740 MtrunA17_Chr4g0041011 59.155 355 139 4 7 358 12 363 4.82e-155 440
Msa0313740 MtrunA17_Chr3g0097891 56.056 355 146 4 7 358 3 350 2.01e-146 417
Msa0313740 MtrunA17_Chr2g0314801 56.918 318 133 3 42 355 33 350 4.85e-137 394
Msa0313740 MtrunA17_Chr3g0085071 55.486 319 139 3 42 358 46 363 1.30e-132 383
Msa0313740 MtrunA17_Chr5g0413851 53.846 351 155 5 12 358 12 359 4.81e-132 381
Msa0313740 MtrunA17_Chr3g0091031 54.658 322 143 3 39 358 28 348 8.17e-131 378
Msa0313740 MtrunA17_Chr3g0085081 54.294 326 146 3 35 358 24 348 1.68e-129 374
Msa0313740 MtrunA17_Chr5g0430371 52.326 344 137 6 42 359 58 400 3.05e-125 365
Msa0313740 MtrunA17_Chr3g0105301 52.239 335 143 5 42 359 43 377 2.10e-124 363
Msa0313740 MtrunA17_Chr2g0314791 47.472 356 160 9 15 358 5 345 8.91e-112 329
Msa0313740 MtrunA17_Chr1g0171171 42.781 374 186 9 6 358 9 375 2.94e-98 296
Msa0313740 MtrunA17_Chr1g0210771 42.296 331 170 6 42 358 59 382 5.19e-96 290
Msa0313740 MtrunA17_Chr7g0258851 42.274 343 173 6 42 360 248 589 9.32e-96 296
Msa0313740 MtrunA17_Chr1g0175671 40.233 343 180 6 42 360 170 511 6.81e-94 290
Msa0313740 MtrunA17_Chr4g0068111 38.144 388 205 9 5 358 67 453 3.18e-91 281
Msa0313740 MtrunA17_Chr1g0213281 39.884 346 182 8 38 358 171 515 4.23e-87 272
Msa0313740 MtrunA17_Chr5g0413271 38.393 336 184 6 42 358 145 476 1.25e-85 267
Msa0313740 MtrunA17_Chr8g0368461 39.155 355 174 8 42 358 178 528 5.30e-84 265
Msa0313740 MtrunA17_Chr4g0071391 37.243 341 191 7 42 360 109 448 8.75e-84 261
Msa0313740 MtrunA17_Chr7g0269991 39.339 333 184 7 42 358 137 467 1.02e-80 254
Msa0313740 MtrunA17_Chr4g0006991 37.101 345 186 9 42 358 86 427 1.67e-77 244
Msa0313740 MtrunA17_Chr3g0113671 37.500 344 188 9 42 358 106 449 5.77e-77 244
Msa0313740 MtrunA17_Chr5g0437291 36.888 347 189 9 42 358 165 511 3.88e-74 238
Msa0313740 MtrunA17_Chr8g0360521 36.340 388 210 10 5 359 27 410 1.25e-73 234
Msa0313740 MtrunA17_Chr3g0114101 36.628 344 191 9 42 359 89 431 1.29e-73 234
Msa0313740 MtrunA17_Chr1g0209921 49.351 231 109 6 37 262 39 266 8.57e-73 227
Msa0313740 MtrunA17_Chr3g0126021 38.261 345 187 9 34 358 121 459 9.66e-71 228
Msa0313740 MtrunA17_Chr5g0437601 34.837 399 212 11 9 359 27 425 6.45e-70 225
Msa0313740 MtrunA17_Chr2g0287901 34.540 359 207 6 22 356 81 435 1.91e-68 222
Msa0313740 MtrunA17_Chr4g0005491 34.582 347 198 10 42 359 62 408 2.84e-66 215
Msa0313740 MtrunA17_Chr7g0259711 36.023 347 193 9 39 358 88 432 6.39e-66 215
Msa0313740 MtrunA17_Chr7g0242701 34.393 346 200 9 39 358 83 427 1.20e-64 211
Msa0313740 MtrunA17_Chr4g0005481 33.811 349 203 9 35 358 101 446 1.96e-64 211
Msa0313740 MtrunA17_Chr8g0384151 31.335 367 229 7 8 359 59 417 9.45e-63 206
Msa0313740 MtrunA17_Chr7g0243301 31.675 382 230 11 7 359 31 410 2.95e-62 204
Msa0313740 MtrunA17_Chr1g0178081 30.311 386 183 10 5 358 10 341 1.98e-52 177
Msa0313740 MtrunA17_Chr2g0283851 30.194 361 212 13 35 360 48 403 9.23e-40 145
Msa0313740 MtrunA17_Chr4g0049421 28.986 345 209 11 42 354 48 388 4.80e-39 143
Msa0313740 MtrunA17_Chr6g0456691 30.352 369 216 11 26 360 60 421 1.19e-38 142
Msa0313740 MtrunA17_Chr8g0384421 31.503 346 206 13 40 358 131 472 2.19e-37 140
Msa0313740 MtrunA17_Chr6g0476041 29.155 367 199 12 38 358 163 514 2.76e-37 140
Msa0313740 MtrunA17_Chr8g0347321 29.396 364 216 13 27 358 85 439 2.24e-36 137
Msa0313740 MtrunA17_Chr1g0188191 31.180 356 198 15 38 354 230 577 2.39e-36 139
Msa0313740 MtrunA17_Chr3g0085101 53.636 110 50 1 225 333 1 110 5.74e-36 127
Msa0313740 MtrunA17_Chr6g0456681 29.752 363 194 13 41 360 63 407 8.40e-36 135
Msa0313740 MtrunA17_Chr5g0414061 30.362 359 210 14 34 358 86 438 2.09e-35 134
Msa0313740 MtrunA17_Chr4g0070341 30.460 348 205 13 41 358 131 471 4.69e-34 130
Msa0313740 MtrunA17_Chr6g0455901 30.000 370 216 16 25 358 54 416 8.78e-34 129
Msa0313740 MtrunA17_Chr5g0414091 30.372 349 209 13 42 358 85 431 4.75e-33 127
Msa0313740 MtrunA17_Chr3g0140371 28.857 350 213 12 40 358 16 360 5.27e-33 126
Msa0313740 MtrunA17_Chr6g0451321 27.793 367 231 11 22 358 95 457 3.37e-32 125
Msa0313740 MtrunA17_Chr5g0414051 27.989 368 216 14 30 358 63 420 5.65e-30 119
Msa0313740 MtrunA17_Chr7g0226991 28.771 358 218 11 34 358 49 402 5.93e-30 118
Msa0313740 MtrunA17_Chr8g0387921 27.273 352 219 12 36 354 68 415 1.08e-27 112
Msa0313740 MtrunA17_Chr8g0391481 26.648 364 230 11 28 358 13 372 2.04e-27 111
Msa0313740 MtrunA17_Chr5g0414041 28.448 348 217 12 42 358 87 433 4.95e-27 110
Msa0313740 MtrunA17_Chr7g0221271 33.333 189 94 6 6 167 22 205 1.70e-21 91.3
Msa0313740 MtrunA17_Chr7g0221291 46.067 89 47 1 42 129 79 167 3.01e-21 89.7
Msa0313740 MtrunA17_Chr1g0209931 50.000 88 40 2 272 358 8 92 8.37e-21 86.3
Msa0313740 MtrunA17_Chr5g0429211 50.602 83 40 1 87 169 187 268 1.61e-19 87.4
Msa0313740 MtrunA17_Chr2g0287931 32.000 125 71 2 101 211 2 126 3.86e-15 71.2
Msa0313740 MtrunA17_Chr5g0429191 57.778 45 10 1 316 351 1 45 8.89e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313740 AT1G29050.1 73.353 334 86 3 29 360 48 380 0.0 526
Msa0313740 AT2G34070.1 69.970 333 94 5 31 360 56 385 4.11e-179 502
Msa0313740 AT2G42570.1 61.774 327 124 1 34 359 39 365 3.07e-158 448
Msa0313740 AT2G31110.2 58.592 355 136 3 9 358 14 362 4.61e-153 435
Msa0313740 AT2G34070.2 71.032 252 70 3 111 360 1 251 1.32e-134 384
Msa0313740 AT3G14850.2 54.658 322 142 3 38 355 30 351 4.03e-130 377
Msa0313740 AT2G30900.1 50.549 364 168 8 2 359 9 366 1.66e-127 370
Msa0313740 AT1G78710.1 50.926 324 153 5 39 358 35 356 1.90e-123 360
Msa0313740 AT5G58600.1 50.149 335 149 6 42 358 66 400 2.15e-114 338
Msa0313740 AT2G30010.1 49.568 347 151 6 36 358 50 396 1.47e-111 331
Msa0313740 AT2G30010.2 49.568 347 151 6 36 358 93 439 1.93e-111 332
Msa0313740 AT2G31110.3 57.480 254 97 3 9 257 14 261 8.45e-103 304
Msa0313740 AT3G14850.1 54.032 248 111 2 111 355 1 248 9.67e-98 290
Msa0313740 AT2G31110.1 61.353 207 80 0 152 358 8 214 1.48e-95 283
Msa0313740 AT3G12060.1 42.857 343 171 7 42 360 196 537 1.34e-94 293
Msa0313740 AT3G54260.1 43.048 374 186 11 3 358 10 374 2.96e-94 286
Msa0313740 AT5G06700.1 41.570 344 176 6 41 360 254 596 3.74e-94 293
Msa0313740 AT1G78710.2 41.667 324 130 6 39 358 28 296 2.44e-87 266
Msa0313740 AT5G20590.1 39.359 343 184 8 41 360 140 481 6.24e-87 271
Msa0313740 AT3G62390.1 37.598 383 201 9 12 358 91 471 1.16e-86 270
Msa0313740 AT2G30900.2 50.965 259 118 6 2 257 9 261 2.95e-86 262
Msa0313740 AT5G49340.1 37.978 366 194 8 25 358 77 441 3.18e-86 268
Msa0313740 AT1G60790.1 39.244 344 181 9 42 358 190 532 9.14e-83 261
Msa0313740 AT5G58600.2 52.232 224 104 3 42 262 66 289 5.47e-81 249
Msa0313740 AT5G01360.2 36.000 375 210 9 12 358 6 378 9.84e-80 249
Msa0313740 AT5G01360.1 37.971 345 184 9 42 358 92 434 1.43e-78 248
Msa0313740 AT5G19160.1 38.040 347 186 6 39 356 96 442 5.20e-77 244
Msa0313740 AT3G11030.1 38.418 354 187 11 33 359 100 449 1.31e-74 238
Msa0313740 AT3G55990.1 35.756 344 194 8 42 358 140 483 1.49e-72 234
Msa0313740 AT1G73140.1 34.656 378 210 10 14 358 32 405 3.26e-72 231
Msa0313740 AT2G40150.1 34.943 352 196 8 40 358 69 420 1.30e-71 229
Msa0313740 AT3G06080.2 36.676 349 192 10 39 360 100 446 4.39e-71 229
Msa0313740 AT2G40160.1 34.384 349 197 9 42 360 77 423 2.68e-70 226
Msa0313740 AT2G40160.2 34.402 343 195 8 42 354 77 419 3.36e-70 226
Msa0313740 AT1G48880.1 35.674 356 206 7 20 359 92 440 7.87e-70 225
Msa0313740 AT2G40320.1 36.390 349 193 10 38 359 77 423 8.00e-70 225
Msa0313740 AT3G11570.1 33.504 391 222 10 3 358 32 419 1.93e-67 219
Msa0313740 AT5G06230.2 34.000 350 202 7 37 358 16 364 8.48e-67 215
Msa0313740 AT5G06230.1 34.000 350 202 7 37 358 57 405 1.38e-66 216
Msa0313740 AT2G38320.1 32.673 404 226 12 1 358 1 404 5.57e-66 214
Msa0313740 AT5G01620.2 33.333 342 201 9 42 358 110 449 4.31e-64 211
Msa0313740 AT5G01620.1 33.333 342 201 9 42 358 110 449 4.31e-64 211
Msa0313740 AT5G01620.3 33.333 342 201 9 42 358 118 457 5.06e-64 211
Msa0313740 AT3G62390.2 34.507 284 156 6 12 265 91 374 1.01e-56 191
Msa0313740 AT2G38320.2 32.704 318 187 7 68 358 4 321 1.95e-56 187
Msa0313740 AT5G19160.2 39.004 241 132 4 39 264 96 336 4.12e-56 187
Msa0313740 AT5G20590.2 39.331 239 130 6 41 264 140 378 1.12e-55 187
Msa0313740 AT2G40160.3 35.470 234 138 5 42 262 77 310 1.30e-48 166
Msa0313740 AT3G06080.1 35.270 241 141 4 39 264 100 340 2.14e-48 167
Msa0313740 AT5G06230.3 33.735 249 144 4 37 264 57 305 5.73e-44 154
Msa0313740 AT5G64470.3 30.398 352 211 11 34 354 42 390 6.79e-44 156
Msa0313740 AT5G64470.2 30.362 359 208 12 34 354 42 396 6.62e-43 154
Msa0313740 AT2G14530.1 30.280 393 229 14 6 359 21 407 1.64e-40 147
Msa0313740 AT1G01430.1 27.642 369 225 11 26 358 85 447 1.46e-37 140
Msa0313740 AT3G02440.2 29.745 353 201 11 42 358 135 476 1.74e-37 140
Msa0313740 AT3G02440.1 29.745 353 201 11 42 358 127 468 1.83e-37 140
Msa0313740 AT1G70230.1 30.286 350 194 15 42 358 79 411 6.71e-37 138
Msa0313740 AT5G64020.1 30.447 358 202 15 42 358 57 408 3.02e-36 136
Msa0313740 AT5G51640.1 29.487 390 220 15 16 358 107 488 8.76e-36 136
Msa0313740 AT4G25360.1 28.977 352 205 12 42 354 175 520 2.27e-35 135
Msa0313740 AT4G25360.2 28.977 352 205 12 42 354 175 520 2.27e-35 135
Msa0313740 AT5G15900.1 27.366 391 244 10 5 358 22 409 3.53e-34 130
Msa0313740 AT5G15900.2 27.366 391 244 10 5 358 41 428 3.65e-34 131
Msa0313740 AT2G37720.1 29.577 355 197 13 42 358 143 482 7.04e-34 130
Msa0313740 AT3G28150.1 29.648 398 213 16 5 358 36 410 4.99e-33 127
Msa0313740 AT5G20680.6 28.919 370 224 15 18 358 98 457 1.03e-32 127
Msa0313740 AT5G20680.4 28.919 370 224 15 18 358 192 551 2.12e-32 127
Msa0313740 AT5G20680.1 28.919 370 224 15 18 358 192 551 2.12e-32 127
Msa0313740 AT5G20680.3 28.919 370 224 15 18 358 192 551 2.12e-32 127
Msa0313740 AT5G20680.5 28.919 370 224 15 18 358 192 551 2.12e-32 127
Msa0313740 AT5G20680.2 28.919 370 224 15 18 358 174 533 2.14e-32 127
Msa0313740 AT5G15890.1 28.736 348 205 11 42 358 187 522 1.22e-31 125
Msa0313740 AT4G01080.1 27.714 350 212 13 37 354 86 426 7.12e-29 116
Msa0313740 AT4G11090.1 26.575 365 212 13 37 358 74 425 1.70e-27 112
Msa0313740 AT4G23790.1 26.634 413 234 18 7 358 23 427 2.69e-27 112
Msa0313740 AT5G64470.4 28.736 261 160 8 34 270 42 300 6.81e-26 106
Msa0313740 AT5G64470.1 28.736 261 160 8 34 270 42 300 8.75e-26 106

Find 106 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATACCGCACACCTTATT+TGG 0.110333 2_4:-9180324 Msa0313740:CDS
TACTTGGAAAATATATATTA+AGG 0.199022 2_4:-9179044 Msa0313740:three_prime_UTR
GATTGACCACTTGGGCTAAA+TGG 0.217574 2_4:-9179595 Msa0313740:CDS
CGAATTATGTCAACCAAATA+AGG 0.257968 2_4:+9180311 None:intergenic
AAAATCAAGTGTAAAATTAT+AGG 0.261207 2_4:-9179017 Msa0313740:three_prime_UTR
GGACAACTTCAACCATTATC+AGG 0.281304 2_4:-9179338 Msa0313740:CDS
CCGTTTAGTGGCATACAATA+AGG 0.283673 2_4:-9179618 Msa0313740:CDS
CTTGGTGTGGTGGGTGATAT+TGG 0.287316 2_4:+9185277 None:intergenic
TTTGAATAAATGTTAGTAAC+TGG 0.304553 2_4:-9178801 Msa0313740:three_prime_UTR
CATTCAAGGCAAATCTCAAA+TGG 0.321965 2_4:-9185191 Msa0313740:exon
TTGAAAGAAGACTTTAGTTT+TGG 0.332563 2_4:+9179550 None:intergenic
TTGTTCAATATGTTACTTGA+TGG 0.341330 2_4:+9179290 None:intergenic
AGTAATGTAAGTAGCTTAAG+AGG 0.341506 2_4:-9185097 Msa0313740:CDS
CTTGGTAAGGCACATGAATC+AGG 0.346575 2_4:+9184911 None:intergenic
GGGATTGTGACAAAGGGTTT+TGG 0.350841 2_4:+9185320 None:intergenic
AATGGGTGCAATTTGTTCAT+AGG 0.370881 2_4:-9185055 Msa0313740:CDS
AAAACTAAAGTCTTCTTTCA+AGG 0.374728 2_4:-9179548 Msa0313740:CDS
AGGAGTTGGTTCCAAGTATC+AGG 0.377013 2_4:+9179128 None:intergenic
TATTTGAGGTATTGTTTGTC+AGG 0.377428 2_4:+9184944 None:intergenic
GTAATATCAAGTAGATAAAC+TGG 0.378242 2_4:+9179245 None:intergenic
TTACTAAACAAAATAAGTTC+AGG 0.384530 2_4:-9178990 Msa0313740:three_prime_UTR
ACTTGGAAAATATATATTAA+GGG 0.392855 2_4:-9179043 Msa0313740:three_prime_UTR
GGTGTATTTGTGCAGGACTA+TGG 0.415902 2_4:-9180359 Msa0313740:intron
AACAATACCTCAAATACTCT+TGG 0.417652 2_4:-9184937 Msa0313740:CDS
TACCAGGATTACCTGATACT+TGG 0.421208 2_4:-9179139 Msa0313740:CDS
GCAATTTGTTCATAGGAAGT+TGG 0.421455 2_4:-9185048 Msa0313740:CDS
CGTTTAGTGGCATACAATAA+GGG 0.422401 2_4:-9179617 Msa0313740:CDS
CAATTTGTTCATAGGAAGTT+GGG 0.425464 2_4:-9185047 Msa0313740:CDS
TGCAGCCATTGGTGCTTACC+AGG 0.425703 2_4:-9179155 Msa0313740:CDS
ACAGTCTACAGTGACATTCC+AGG 0.428183 2_4:-9184272 Msa0313740:intron
ATTGACCACTTGGGCTAAAT+GGG 0.430670 2_4:-9179594 Msa0313740:CDS
TTGCACCCATTTGCTACTAC+TGG 0.431740 2_4:+9185067 None:intergenic
CAAGAACATGGACCGTTTAG+TGG 0.437683 2_4:-9179630 Msa0313740:CDS
GGATATGTTGACCCTGATAA+TGG 0.441283 2_4:+9179326 None:intergenic
TTAACATTGGAGGATGTAGA+TGG 0.445837 2_4:-9185481 Msa0313740:five_prime_UTR
ATCTACATCCTCCAATGTTA+AGG 0.455082 2_4:+9185483 None:intergenic
ACCCCTGTGATGATCCTTTG+TGG 0.461343 2_4:+9180189 None:intergenic
ATTAAATTCAGGATCAATGA+AGG 0.474200 2_4:+9184985 None:intergenic
ACAATAAGGGATTGACCACT+TGG 0.475609 2_4:-9179604 Msa0313740:CDS
CAGGTTTCCAAGAGTATTTG+AGG 0.480299 2_4:+9184930 None:intergenic
GCCTGCATGATCACCACTAT+AGG 0.481631 2_4:+9179184 None:intergenic
GAGCACACTAGTTTCATTCA+AGG 0.483537 2_4:-9185205 Msa0313740:five_prime_UTR
CCCCTGTGATGATCCTTTGT+GGG 0.484273 2_4:+9180190 None:intergenic
TACTAAACAAAATAAGTTCA+GGG 0.485961 2_4:-9178989 Msa0313740:three_prime_UTR
GTCGGTTCTCTTGGTGTGGT+GGG 0.486749 2_4:+9185268 None:intergenic
CCTTATTGTATGCCACTAAA+CGG 0.487673 2_4:+9179618 None:intergenic
ATTCAAGGCAAATCTCAAAT+GGG 0.493177 2_4:-9185190 Msa0313740:exon
TAGTACTTAGTCGGTTCTCT+TGG 0.493289 2_4:+9185259 None:intergenic
ACATGTAGAGTGCAGCATAT+AGG 0.498513 2_4:+9179108 None:intergenic
GGGTAAGAAGATAATGTTTG+TGG 0.503120 2_4:-9184389 Msa0313740:CDS
GGTAAGAAGATAATGTTTGT+GGG 0.504608 2_4:-9184388 Msa0313740:CDS
ATGAAACTAGTGTGCTCTTG+TGG 0.507084 2_4:+9185211 None:intergenic
GCACACCCTTCTTCCTATAG+TGG 0.508415 2_4:-9179197 Msa0313740:CDS
CAGGCAATGATTGCAGCCAT+TGG 0.512288 2_4:-9179166 Msa0313740:CDS
CCCGTGAGCCTTAACATTGG+AGG 0.516984 2_4:-9185491 None:intergenic
TTACACTTCTCTCACAACTA+AGG 0.518338 2_4:-9179226 Msa0313740:CDS
AGTCGGTTCTCTTGGTGTGG+TGG 0.523282 2_4:+9185267 None:intergenic
AGATGGGATTATATAAGAGA+TGG 0.530008 2_4:-9179665 Msa0313740:CDS
TTGTGACTTGAACAGGGGAA+AGG 0.533258 2_4:-9179390 Msa0313740:intron
TGATCACCACTATAGGAAGA+AGG 0.537215 2_4:+9179191 None:intergenic
GTAATCCTGGTAAGCACCAA+TGG 0.537271 2_4:+9179150 None:intergenic
TCCTATAGTGGTGATCATGC+AGG 0.537608 2_4:-9179185 Msa0313740:CDS
ACATTGGACTCTATTGTCGC+TGG 0.539178 2_4:-9180266 Msa0313740:CDS
TGAAACTAGTGTGCTCTTGT+GGG 0.541314 2_4:+9185212 None:intergenic
TTCCAAGTATCAGGTAATCC+TGG 0.542149 2_4:+9179137 None:intergenic
TTCAATATGTTACTTGATGG+AGG 0.553250 2_4:+9179293 None:intergenic
TTAAATTCAGGATCAATGAA+GGG 0.558381 2_4:+9184986 None:intergenic
CTTGATGGAGGTAGACCTGC+TGG 0.559776 2_4:+9179305 None:intergenic
AGGGTATATATACCTTGGTA+AGG 0.564303 2_4:+9184898 None:intergenic
TGGGTCATATATATGTATGA+TGG 0.565789 2_4:+9185231 None:intergenic
AAAAGCCAGTAGTAGCAAAT+GGG 0.567471 2_4:-9185072 Msa0313740:CDS
GATGTAGATGGTTAGACCAA+TGG 0.567920 2_4:-9185469 Msa0313740:five_prime_UTR
GACCCACAAAGGATCATCAC+AGG 0.570940 2_4:-9180192 Msa0313740:CDS
GATGGGATTATATAAGAGAT+GGG 0.572464 2_4:-9179664 Msa0313740:CDS
ATCAACCCATTTAGCCCAAG+TGG 0.578202 2_4:+9179589 None:intergenic
CGTTGGACGAGTGCTTACAT+TGG 0.580963 2_4:-9180282 Msa0313740:CDS
AATCATAGAGAGGATAAGAC+GGG 0.584204 2_4:+9185017 None:intergenic
CTTAGTCGGTTCTCTTGGTG+TGG 0.587703 2_4:+9185264 None:intergenic
GTCTTGTATGATTCATGCGT+CGG 0.589673 2_4:-9184332 Msa0313740:CDS
GTCGCTGGAAATGCATGGAA+AGG 0.589762 2_4:-9180251 Msa0313740:CDS
AGAGTGCAGCATATAGGAGT+TGG 0.590451 2_4:+9179114 None:intergenic
ATGGAAAAGTAGTACTTAGT+CGG 0.593125 2_4:+9185250 None:intergenic
TCAGGGTCAACATATCCAGC+AGG 0.593746 2_4:-9179320 Msa0313740:CDS
GACATAATTCGAGAAAACGT+TGG 0.597443 2_4:-9180299 Msa0313740:CDS
TGGAAATGCATGGAAAGGAA+TGG 0.604996 2_4:-9180246 Msa0313740:CDS
GATCACCACTATAGGAAGAA+GGG 0.614202 2_4:+9179192 None:intergenic
GTAATGTAAGTAGCTTAAGA+GGG 0.614558 2_4:-9185096 Msa0313740:CDS
GAATCATAGAGAGGATAAGA+CGG 0.618192 2_4:+9185016 None:intergenic
ATTCACTGAGTCTGAACATG+TGG 0.618824 2_4:-9184363 Msa0313740:CDS
ATGGAAAGGAATGGACATGC+TGG 0.621693 2_4:-9180237 Msa0313740:CDS
GACAACTTCAACCATTATCA+GGG 0.625022 2_4:-9179337 Msa0313740:CDS
CTGATTCATGTGCCTTACCA+AGG 0.626680 2_4:-9184910 Msa0313740:intron
CTATTGTCGCTGGAAATGCA+TGG 0.626945 2_4:-9180256 Msa0313740:CDS
TAAATTCAGGATCAATGAAG+GGG 0.628632 2_4:+9184987 None:intergenic
TGGCATTGGTGGACCCACAA+AGG 0.630583 2_4:-9180203 Msa0313740:CDS
TAACCCGTGAGCCTTAACAT+TGG 0.631583 2_4:-9185494 None:intergenic
TTTGTTCATAGGAAGTTGGG+TGG 0.640742 2_4:-9185044 Msa0313740:CDS
ACTTGAACAGGGGAAAGGAG+TGG 0.645093 2_4:-9179385 Msa0313740:intron
GGCACTTACTGATAATGAGT+AGG 0.647065 2_4:+9179518 None:intergenic
GTCTAAACTAGTCAAGAACA+TGG 0.648323 2_4:-9179642 Msa0313740:CDS
TGTCAACCAAATAAGGTGTG+CGG 0.666261 2_4:+9180318 None:intergenic
CAATAAGGGATTGACCACTT+GGG 0.666755 2_4:-9179603 Msa0313740:CDS
ACCCACAAAGGATCATCACA+GGG 0.673284 2_4:-9180191 Msa0313740:CDS
GGGCAGCTTGAATCATAGAG+AGG 0.678061 2_4:+9185007 None:intergenic
TTCACTGAGTCTGAACATGT+GGG 0.711654 2_4:-9184362 Msa0313740:CDS
CCCACAAAGGATCATCACAG+GGG 0.803852 2_4:-9180190 Msa0313740:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAATTTTTTTA+TGG - chr2_4:9182974-9182993 Msa0313740:intron 0.0%
!!! TATAATTAAAATTTTATTAA+TGG + chr2_4:9184541-9184560 None:intergenic 0.0%
!! ATCAAATAAATAAATTTAAC+TGG + chr2_4:9179520-9179539 None:intergenic 10.0%
!!! GTATAGTTTTTAAAAAATTA+CGG - chr2_4:9180348-9180367 Msa0313740:intron 10.0%
!!! TCAATTTTTATTTTTATTGT+AGG + chr2_4:9180452-9180471 None:intergenic 10.0%
!!! TAAATTTGTAAATTTGATTT+TGG - chr2_4:9180510-9180529 Msa0313740:intron 10.0%
!! AAAATGAAATATATTGTATT+GGG + chr2_4:9181303-9181322 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr2_4:9181327-9181346 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr2_4:9181328-9181347 None:intergenic 10.0%
!!! ACACTGATTTTTTTATTTTT+GGG + chr2_4:9178980-9178999 None:intergenic 15.0%
!!! TATTTTTGACAATTAAATTC+AGG + chr2_4:9179306-9179325 None:intergenic 15.0%
!! GAATTTAATTGTCAAAAATA+TGG - chr2_4:9179306-9179325 Msa0313740:CDS 15.0%
!! AAGAAATTGTATAATTGTAT+TGG + chr2_4:9179417-9179436 None:intergenic 15.0%
!! TGTTTGATAGATATAAATAA+AGG + chr2_4:9179628-9179647 None:intergenic 15.0%
!! TGAGAGAAAATTATTAATAA+CGG + chr2_4:9179779-9179798 None:intergenic 15.0%
!! AAAATAAAATAAAGTAAACC+TGG + chr2_4:9180026-9180045 None:intergenic 15.0%
!!! AATTTGATTTTGGTTAAAAA+CGG - chr2_4:9180520-9180539 Msa0313740:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr2_4:9180857-9180876 None:intergenic 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG + chr2_4:9180921-9180940 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr2_4:9180922-9180941 None:intergenic 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr2_4:9180856-9180875 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr2_4:9180857-9180876 None:intergenic 15.0%
!! GAAAATGAAATATATTGTAT+TGG + chr2_4:9181304-9181323 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr2_4:9181326-9181345 None:intergenic 15.0%
!!! TATTTTTTTTTATAAAGGGA+TGG - chr2_4:9182019-9182038 Msa0313740:intron 15.0%
!!! TCATTACTCATTTTAATTTT+GGG + chr2_4:9182408-9182427 None:intergenic 15.0%
!!! TAAGTTGAAATTAATATTGA+TGG - chr2_4:9182694-9182713 Msa0313740:intron 15.0%
!! TGAATAATTCTTTGATTAAA+AGG + chr2_4:9182728-9182747 None:intergenic 15.0%
!! TGAAGATTAATATAATGAAA+TGG - chr2_4:9183162-9183181 Msa0313740:intron 15.0%
!! GAAGATTAATATAATGAAAT+GGG - chr2_4:9183163-9183182 Msa0313740:intron 15.0%
!!! AAAAAATTAAGCATTGAAAA+TGG + chr2_4:9183212-9183231 None:intergenic 15.0%
!!! TTCAATGCTTAATTTTTTAT+CGG - chr2_4:9183214-9183233 Msa0313740:intron 15.0%
!!! CATCTAAAATTTAAGATATT+AGG + chr2_4:9183356-9183375 None:intergenic 15.0%
!!! CTAATATCTTAAATTTTAGA+TGG - chr2_4:9183354-9183373 Msa0313740:intron 15.0%
!!! GTAATTTATATAGTTCTTTT+GGG + chr2_4:9184225-9184244 None:intergenic 15.0%
!!! AGTAATTTATATAGTTCTTT+TGG + chr2_4:9184226-9184245 None:intergenic 15.0%
!! CTATATAAATTACTTTCTAA+CGG - chr2_4:9184232-9184251 Msa0313740:intron 15.0%
!!! AATTTTATTAATGGAAGTAT+CGG + chr2_4:9184532-9184551 None:intergenic 15.0%
!! GAAAAAAAAAAAACATTACT+TGG - chr2_4:9184565-9184584 Msa0313740:intron 15.0%
!!! TTAATTTATTTTCAGCATTA+TGG + chr2_4:9184849-9184868 None:intergenic 15.0%
!! TACTTGGAAAATATATATTA+AGG - chr2_4:9185233-9185252 Msa0313740:five_prime_UTR 15.0%
!! ACTTGGAAAATATATATTAA+GGG - chr2_4:9185234-9185253 Msa0313740:five_prime_UTR 15.0%
!! AAAATCAAGTGTAAAATTAT+AGG - chr2_4:9185260-9185279 Msa0313740:five_prime_UTR 15.0%
!! ATTAAAAAATTACTTTACGA+GGG - chr2_4:9185327-9185346 Msa0313740:five_prime_UTR 15.0%
!!! ATTGAAGAGATTGTTTTTAT+GGG + chr2_4:9178896-9178915 None:intergenic 20.0%
!!! AATTGAAGAGATTGTTTTTA+TGG + chr2_4:9178897-9178916 None:intergenic 20.0%
!!! GACACTGATTTTTTTATTTT+TGG + chr2_4:9178981-9179000 None:intergenic 20.0%
!! TAATCTAAGAAACATGATAT+TGG + chr2_4:9179445-9179464 None:intergenic 20.0%
!! AAAAACATACACATGATATT+TGG + chr2_4:9180231-9180250 None:intergenic 20.0%
!! TGTTTGAATACATTTAATCA+AGG - chr2_4:9180567-9180586 Msa0313740:intron 20.0%
!! TATTTGAATACATTTAATCC+AGG - chr2_4:9180666-9180685 Msa0313740:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr2_4:9180787-9180806 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG + chr2_4:9180920-9180939 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr2_4:9180787-9180806 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr2_4:9180823-9180842 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr2_4:9180824-9180843 None:intergenic 20.0%
!! CAAGAAATATATAAATCGAA+AGG - chr2_4:9181424-9181443 Msa0313740:intron 20.0%
!!! TTTGATTAGTTGAGATATAA+GGG + chr2_4:9181922-9181941 None:intergenic 20.0%
!!! TTTTGATTAGTTGAGATATA+AGG + chr2_4:9181923-9181942 None:intergenic 20.0%
!!! TTGATTTTTGAATTGTTGAT+TGG + chr2_4:9182132-9182151 None:intergenic 20.0%
!!! TTTCTCAACTTTATTTTTTG+TGG + chr2_4:9182179-9182198 None:intergenic 20.0%
!! TGAATTAAATCATATGTGAT+CGG + chr2_4:9182253-9182272 None:intergenic 20.0%
!!! CATTACTCATTTTAATTTTG+GGG + chr2_4:9182407-9182426 None:intergenic 20.0%
!!! GTCATTACTCATTTTAATTT+TGG + chr2_4:9182409-9182428 None:intergenic 20.0%
!! TGTTTCATAATTTCATACTA+CGG + chr2_4:9182639-9182658 None:intergenic 20.0%
!! TAATTCTTTGATTAAAAGGT+AGG + chr2_4:9182724-9182743 None:intergenic 20.0%
!!! ATAAAAACAGCATTTTCAAA+AGG + chr2_4:9183016-9183035 None:intergenic 20.0%
!!! TCAATGCTTAATTTTTTATC+GGG - chr2_4:9183215-9183234 Msa0313740:intron 20.0%
!! TTATCGGGTAAAATTTATAT+AGG - chr2_4:9183230-9183249 Msa0313740:intron 20.0%
!!! TTTTGGGTAAAATATACTAT+AGG + chr2_4:9183465-9183484 None:intergenic 20.0%
!!! ACAATACACATTTTAAGATT+AGG + chr2_4:9183620-9183639 None:intergenic 20.0%
!! TATTCATTCGTTATATGTAA+AGG + chr2_4:9183692-9183711 None:intergenic 20.0%
!! TATTAAAGAGTGATAACATT+TGG - chr2_4:9183891-9183910 Msa0313740:intron 20.0%
!!! TTTGTTTTTTGGTGAATAAA+TGG + chr2_4:9184277-9184296 None:intergenic 20.0%
!!! TCGTGATTTTGTAAATATTA+CGG - chr2_4:9184407-9184426 Msa0313740:CDS 20.0%
!! CATTATGGAATATACAAAAA+TGG + chr2_4:9184834-9184853 None:intergenic 20.0%
!!! ATATATTTTCCAAGTAATGA+AGG + chr2_4:9185229-9185248 None:intergenic 20.0%
!! TTACTAAACAAAATAAGTTC+AGG - chr2_4:9185287-9185306 Msa0313740:five_prime_UTR 20.0%
!! TACTAAACAAAATAAGTTCA+GGG - chr2_4:9185288-9185307 Msa0313740:five_prime_UTR 20.0%
!! CATTAAAAAATTACTTTACG+AGG - chr2_4:9185326-9185345 Msa0313740:five_prime_UTR 20.0%
!! TTAAAAAATTACTTTACGAG+GGG - chr2_4:9185328-9185347 Msa0313740:five_prime_UTR 20.0%
!! TTTGAATAAATGTTAGTAAC+TGG - chr2_4:9185476-9185495 Msa0313740:five_prime_UTR 20.0%
!! TTCTTTTGTATTCATTCCAT+TGG + chr2_4:9178827-9178846 None:intergenic 25.0%
!!! TTGAAGAGATTGTTTTTATG+GGG + chr2_4:9178895-9178914 None:intergenic 25.0%
! TTAAATTCAGGATCAATGAA+GGG + chr2_4:9179294-9179313 None:intergenic 25.0%
! ATTAAATTCAGGATCAATGA+AGG + chr2_4:9179295-9179314 None:intergenic 25.0%
! TAAGAAACATGATATTGGTA+TGG + chr2_4:9179440-9179459 None:intergenic 25.0%
! TAAATTTAACTGGCTGATAT+TGG + chr2_4:9179510-9179529 None:intergenic 25.0%
! TCAAATCTTATATGAGAAAG+TGG - chr2_4:9179590-9179609 Msa0313740:CDS 25.0%
! TGATAGATATAAATAAAGGC+TGG + chr2_4:9179624-9179643 None:intergenic 25.0%
! TATCAAACACAAATACTACT+TGG - chr2_4:9179639-9179658 Msa0313740:CDS 25.0%
! TCTTTGTCTTCTTTCTAATT+TGG - chr2_4:9180053-9180072 Msa0313740:intron 25.0%
! TAAAGAAACAAACAAGGAAA+TGG + chr2_4:9180138-9180157 None:intergenic 25.0%
! CATGTGTATGTTTGATATTA+CGG - chr2_4:9180273-9180292 Msa0313740:CDS 25.0%
!!! AGAATTTTGAAGAGTATGTT+TGG + chr2_4:9180406-9180425 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr2_4:9180788-9180807 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr2_4:9180809-9180828 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr2_4:9180810-9180829 None:intergenic 25.0%
! TGTTTGAATACATTTAATCC+AGG - chr2_4:9181004-9181023 Msa0313740:intron 25.0%
! TTGACATAAACTAACTTTAG+TGG + chr2_4:9181031-9181050 None:intergenic 25.0%
! TTAGTTTATGTCAAAACTGT+TGG - chr2_4:9181037-9181056 Msa0313740:intron 25.0%
!!! TTAGTGTGTGTTTAGTTTTA+AGG + chr2_4:9181080-9181099 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr2_4:9180788-9180807 None:intergenic 25.0%
!!! ATTTATACACTAGTCACTTT+TGG - chr2_4:9181400-9181419 Msa0313740:intron 25.0%
!!! TTTATACACTAGTCACTTTT+GGG - chr2_4:9181401-9181420 Msa0313740:intron 25.0%
! ATTGAAGAGTAAAACTTGTA+TGG + chr2_4:9181662-9181681 None:intergenic 25.0%
! AATGTATAAAAGCAAGAGTT+AGG - chr2_4:9181687-9181706 Msa0313740:intron 25.0%
!! TTGATTAGTTGAGATATAAG+GGG + chr2_4:9181921-9181940 None:intergenic 25.0%
! CATTCGATCAGATATTATAT+CGG + chr2_4:9182218-9182237 None:intergenic 25.0%
! CCTTATCTTATCAAAATCTT+TGG + chr2_4:9182351-9182370 None:intergenic 25.0%
!!! CCAAAGATTTTGATAAGATA+AGG - chr2_4:9182348-9182367 Msa0313740:intron 25.0%
! TGAACACCTAATAATAAAGA+GGG + chr2_4:9182502-9182521 None:intergenic 25.0%
! ATGAACACCTAATAATAAAG+AGG + chr2_4:9182503-9182522 None:intergenic 25.0%
! TTATTAGGTGTTCATTATGT+TGG - chr2_4:9182508-9182527 Msa0313740:intron 25.0%
! TAATGTTGACAAGTCATAAA+TGG + chr2_4:9182604-9182623 None:intergenic 25.0%
! GTTCTAATTGCATACAAATT+TGG - chr2_4:9182666-9182685 Msa0313740:intron 25.0%
!!! CTATGATTTGTCATTTTCTT+AGG + chr2_4:9182758-9182777 None:intergenic 25.0%
!! GATGTTCCAAAATATTTTCA+TGG - chr2_4:9182851-9182870 Msa0313740:intron 25.0%
!! TCTAAGCCATGAAAATATTT+TGG + chr2_4:9182860-9182879 None:intergenic 25.0%
!! AATATACTATAGGTCCTTTT+GGG + chr2_4:9183455-9183474 None:intergenic 25.0%
!! AAATATACTATAGGTCCTTT+TGG + chr2_4:9183456-9183475 None:intergenic 25.0%
!!! CACATTTTAAGATTAGGTAA+GGG + chr2_4:9183614-9183633 None:intergenic 25.0%
!!! ACACATTTTAAGATTAGGTA+AGG + chr2_4:9183615-9183634 None:intergenic 25.0%
!!! AGTGTACATACTTTGTTTTT+TGG + chr2_4:9184288-9184307 None:intergenic 25.0%
!!! ACTATGTTTACAGTTTTGAT+TGG - chr2_4:9184305-9184324 Msa0313740:CDS 25.0%
!!! CTATGTTTACAGTTTTGATT+GGG - chr2_4:9184306-9184325 Msa0313740:CDS 25.0%
!! TACTTTTATCATGTTCAGAT+GGG - chr2_4:9184596-9184615 Msa0313740:intron 25.0%
!!! TTGAAAGAAGACTTTAGTTT+TGG + chr2_4:9184730-9184749 None:intergenic 25.0%
! AAAACTAAAGTCTTCTTTCA+AGG - chr2_4:9184729-9184748 Msa0313740:intron 25.0%
! ACACAAAACTATTGAATAGA+AGG + chr2_4:9184783-9184802 None:intergenic 25.0%
!! TAATATTTTGTGACTTGAAC+AGG - chr2_4:9184880-9184899 Msa0313740:intron 25.0%
!! AATATTTTGTGACTTGAACA+GGG - chr2_4:9184881-9184900 Msa0313740:intron 25.0%
!! TTGTTCAATATGTTACTTGA+TGG + chr2_4:9184990-9185009 None:intergenic 25.0%
! GTAATATCAAGTAGATAAAC+TGG + chr2_4:9185035-9185054 None:intergenic 25.0%
!! ATTCATTTTCCTTCATTACT+TGG - chr2_4:9185217-9185236 Msa0313740:five_prime_UTR 25.0%
!!! ATTTTTGGGATTGTGACAAA+GGG + chr2_4:9178966-9178985 None:intergenic 30.0%
!!! TATTTTTGGGATTGTGACAA+AGG + chr2_4:9178967-9178986 None:intergenic 30.0%
ATGGAAAAGTAGTACTTAGT+CGG + chr2_4:9179030-9179049 None:intergenic 30.0%
TGGGTCATATATATGTATGA+TGG + chr2_4:9179049-9179068 None:intergenic 30.0%
ATTCAAGGCAAATCTCAAAT+GGG - chr2_4:9179087-9179106 Msa0313740:exon 30.0%
!! CTTTTTCATCAACTTCTACT+TGG - chr2_4:9179144-9179163 Msa0313740:CDS 30.0%
AGTAATGTAAGTAGCTTAAG+AGG - chr2_4:9179180-9179199 Msa0313740:CDS 30.0%
GTAATGTAAGTAGCTTAAGA+GGG - chr2_4:9179181-9179200 Msa0313740:CDS 30.0%
! CAATTTGTTCATAGGAAGTT+GGG - chr2_4:9179230-9179249 Msa0313740:CDS 30.0%
TAAATTCAGGATCAATGAAG+GGG + chr2_4:9179293-9179312 None:intergenic 30.0%
!! TATTTGAGGTATTGTTTGTC+AGG + chr2_4:9179336-9179355 None:intergenic 30.0%
AACAATACCTCAAATACTCT+TGG - chr2_4:9179340-9179359 Msa0313740:CDS 30.0%
! GTATTGGTACATAAATGTGA+GGG + chr2_4:9179401-9179420 None:intergenic 30.0%
! TGTATTGGTACATAAATGTG+AGG + chr2_4:9179402-9179421 None:intergenic 30.0%
ACACAAATACTACTTGGATT+AGG - chr2_4:9179645-9179664 Msa0313740:CDS 30.0%
GTAATCATATATGTTAGTGC+CGG + chr2_4:9179700-9179719 None:intergenic 30.0%
! GGAAAGATTTTCTGAACAAA+TGG - chr2_4:9179863-9179882 Msa0313740:intron 30.0%
! AAGATTTTCTGAACAAATGG+AGG - chr2_4:9179866-9179885 Msa0313740:intron 30.0%
! AGATTTTCTGAACAAATGGA+GGG - chr2_4:9179867-9179886 Msa0313740:intron 30.0%
GGTAAGAAGATAATGTTTGT+GGG - chr2_4:9179889-9179908 Msa0313740:intron 30.0%
GCAACATAAAGAAACAAACA+AGG + chr2_4:9180144-9180163 None:intergenic 30.0%
!! ATACACATGATATTTGGTGT+TGG + chr2_4:9180225-9180244 None:intergenic 30.0%
! TTTGAAGAGTATGTTTGGTA+TGG + chr2_4:9180401-9180420 None:intergenic 30.0%
!! GATTCACTTTTGGTTAAAAG+CGG - chr2_4:9180618-9180637 Msa0313740:intron 30.0%
! GAAGTTTATGTCAAAAGTGT+TGG - chr2_4:9180695-9180714 Msa0313740:intron 30.0%
!!! AAAAGTGTTGGATTCACTTT+TGG - chr2_4:9180707-9180726 Msa0313740:intron 30.0%
AGAAAATGGGTCAGTTATTT+CGG + chr2_4:9180774-9180793 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr2_4:9180913-9180932 None:intergenic 30.0%
TTTGTGTGAAAAACCAAAGT+AGG - chr2_4:9180943-9180962 Msa0313740:intron 30.0%
! AAAACTGTTGGATTCACTTT+TGG - chr2_4:9181049-9181068 Msa0313740:intron 30.0%
TAAAAGTTTGCGTTACTTAC+AGG + chr2_4:9181136-9181155 None:intergenic 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr2_4:9181215-9181234 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr2_4:9181216-9181235 None:intergenic 30.0%
TAGTGTGAGCAAAACTTATA+TGG - chr2_4:9181564-9181583 Msa0313740:intron 30.0%
GGTCACATGCATAAATAATT+TGG + chr2_4:9181641-9181660 None:intergenic 30.0%
TACATGTCCACTATATTCTT+GGG + chr2_4:9181758-9181777 None:intergenic 30.0%
! AAAGTGAAGATTCTTTTGCT+TGG - chr2_4:9182099-9182118 Msa0313740:intron 30.0%
TAAAGTTGAGAAAACATCTC+AGG - chr2_4:9182186-9182205 Msa0313740:intron 30.0%
GAACACCTAATAATAAAGAG+GGG + chr2_4:9182501-9182520 None:intergenic 30.0%
CTAATTGCATACAAATTTGG+CGG - chr2_4:9182669-9182688 Msa0313740:intron 30.0%
! TCTAAAATCCTAATTATGGC+GGG + chr2_4:9182822-9182841 None:intergenic 30.0%
! GTCTAAAATCCTAATTATGG+CGG + chr2_4:9182823-9182842 None:intergenic 30.0%
! GGAGTCTAAAATCCTAATTA+TGG + chr2_4:9182826-9182845 None:intergenic 30.0%
! TAATTAGGATTTTAGACTCC+TGG - chr2_4:9182826-9182845 Msa0313740:intron 30.0%
!!! AATATTTTGGAACATCTACC+AGG + chr2_4:9182847-9182866 None:intergenic 30.0%
TATGAGATTAATCTTCGAGT+TGG - chr2_4:9182893-9182912 Msa0313740:intron 30.0%
AAAGTGAAAAAGAGATTCCA+TGG - chr2_4:9183078-9183097 Msa0313740:intron 30.0%
AAGTGAAAAAGAGATTCCAT+GGG - chr2_4:9183079-9183098 Msa0313740:intron 30.0%
TCTGTCAATACAGTAAGATA+AGG - chr2_4:9183128-9183147 Msa0313740:intron 30.0%
! TATAGGTGTAATTTTCGAAG+TGG - chr2_4:9183247-9183266 Msa0313740:intron 30.0%
GTGAGATATGTTTGTTTAAG+TGG - chr2_4:9183269-9183288 Msa0313740:intron 30.0%
!!! CGCTTTCAACACTTTTTTTT+GGG + chr2_4:9183481-9183500 None:intergenic 30.0%
!!! ACGCTTTCAACACTTTTTTT+TGG + chr2_4:9183482-9183501 None:intergenic 30.0%
AAAAACACGGTTAAACAACT+AGG + chr2_4:9183731-9183750 None:intergenic 30.0%
ATTTCAGACTTCATCGAATA+GGG + chr2_4:9183756-9183775 None:intergenic 30.0%
! AGTCAAATATCACGTTTTGA+CGG - chr2_4:9183797-9183816 Msa0313740:intron 30.0%
! TGCATTATGTTGTTTGTTAG+TGG - chr2_4:9183829-9183848 Msa0313740:intron 30.0%
TGTTATCACTCTTTAATAGC+TGG + chr2_4:9183889-9183908 None:intergenic 30.0%
CGAATTATGTCAACCAAATA+AGG + chr2_4:9183969-9183988 None:intergenic 30.0%
CAAACATACTGTTACTAGTT+AGG + chr2_4:9184188-9184207 None:intergenic 30.0%
CTAACTAGTAACAGTATGTT+TGG - chr2_4:9184186-9184205 Msa0313740:intron 30.0%
! AAGCATACACGTAAAGTATT+AGG + chr2_4:9184350-9184369 None:intergenic 30.0%
TAATACTTTACGTGTATGCT+TGG - chr2_4:9184349-9184368 Msa0313740:CDS 30.0%
!! CTACTTTTATCATGTTCAGA+TGG - chr2_4:9184595-9184614 Msa0313740:intron 30.0%
AGATGGGATTATATAAGAGA+TGG - chr2_4:9184612-9184631 Msa0313740:intron 30.0%
GATGGGATTATATAAGAGAT+GGG - chr2_4:9184613-9184632 Msa0313740:intron 30.0%
!!! AAGAAGACTTTAGTTTTGGT+AGG + chr2_4:9184726-9184745 None:intergenic 30.0%
! ATATTTTGTGACTTGAACAG+GGG - chr2_4:9184882-9184901 Msa0313740:intron 30.0%
CAACCAAAAAATAGTTGTAG+TGG - chr2_4:9184918-9184937 Msa0313740:CDS 30.0%
!!! TGTCCACTACAACTATTTTT+TGG + chr2_4:9184924-9184943 None:intergenic 30.0%
! TTCAATATGTTACTTGATGG+AGG + chr2_4:9184987-9185006 None:intergenic 30.0%
ATCTACATCCTCCAATGTTA+AGG + chr2_4:9178797-9178816 None:intergenic 35.0%
TTAACATTGGAGGATGTAGA+TGG - chr2_4:9178796-9178815 Msa0313740:three_prime_UTR 35.0%
CATTCAAGGCAAATCTCAAA+TGG - chr2_4:9179086-9179105 Msa0313740:three_prime_UTR 35.0%
AAAAAGCCAGTAGTAGCAAA+TGG - chr2_4:9179204-9179223 Msa0313740:CDS 35.0%
AAAAGCCAGTAGTAGCAAAT+GGG - chr2_4:9179205-9179224 Msa0313740:CDS 35.0%
! AATGGGTGCAATTTGTTCAT+AGG - chr2_4:9179222-9179241 Msa0313740:CDS 35.0%
! GCAATTTGTTCATAGGAAGT+TGG - chr2_4:9179229-9179248 Msa0313740:CDS 35.0%
AATCATAGAGAGGATAAGAC+GGG + chr2_4:9179263-9179282 None:intergenic 35.0%
GAATCATAGAGAGGATAAGA+CGG + chr2_4:9179264-9179283 None:intergenic 35.0%
AGGGTATATATACCTTGGTA+AGG + chr2_4:9179382-9179401 None:intergenic 35.0%
! ATGTGAGGGTATATATACCT+TGG + chr2_4:9179387-9179406 None:intergenic 35.0%
AGATTTGAACTCAGTCACTA+AGG + chr2_4:9179578-9179597 None:intergenic 35.0%
ATTAGGCGTGCTATAATGTT+GGG - chr2_4:9179662-9179681 Msa0313740:CDS 35.0%
TGTTGGGTACATATTGTTTC+CGG - chr2_4:9179678-9179697 Msa0313740:intron 35.0%
CGTTGTATTAGTGTTGTGTT+TGG - chr2_4:9179719-9179738 Msa0313740:intron 35.0%
AATGAACACAAACTCAGACA+CGG + chr2_4:9179748-9179767 None:intergenic 35.0%
!!! TTGTGTGTGTGTAGTTTTGA+CGG - chr2_4:9179841-9179860 Msa0313740:intron 35.0%
! GATTTTCTGAACAAATGGAG+GGG - chr2_4:9179868-9179887 Msa0313740:intron 35.0%
GGGTAAGAAGATAATGTTTG+TGG - chr2_4:9179888-9179907 Msa0313740:intron 35.0%
!! AAAAAGCTGGTCTTTGCATT+GGG + chr2_4:9179973-9179992 None:intergenic 35.0%
!! TAAAAAGCTGGTCTTTGCAT+TGG + chr2_4:9179974-9179993 None:intergenic 35.0%
! ATGCAAAGACCAGCTTTTTA+AGG - chr2_4:9179974-9179993 Msa0313740:intron 35.0%
TGGTGCATGATTCATTTCAT+TGG - chr2_4:9180073-9180092 Msa0313740:intron 35.0%
CGGTAGTTATGTCTGAATTA+CGG - chr2_4:9180293-9180312 Msa0313740:CDS 35.0%
! AAACGTGTTGGATTCACTTT+TGG - chr2_4:9180608-9180627 Msa0313740:intron 35.0%
!!! TTGGATTCACTTTTGGCTTT+TGG - chr2_4:9180714-9180733 Msa0313740:intron 35.0%
! GAAAATGGGTCAGTTATTTC+GGG + chr2_4:9180773-9180792 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr2_4:9180956-9180975 Msa0313740:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr2_4:9180957-9180976 Msa0313740:intron 35.0%
! TAAACTAACTTTAGTGGACC+TGG + chr2_4:9181025-9181044 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr2_4:9181180-9181199 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr2_4:9181349-9181368 Msa0313740:intron 35.0%
CCAAAGTAGGTCAATTAAAC+CGG - chr2_4:9181362-9181381 Msa0313740:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG - chr2_4:9181363-9181382 Msa0313740:intron 35.0%
GTACATGTCCACTATATTCT+TGG + chr2_4:9181759-9181778 None:intergenic 35.0%
GTGCATCAATTTGAAAATGG+AGG + chr2_4:9181781-9181800 None:intergenic 35.0%
ACGGTGCATCAATTTGAAAA+TGG + chr2_4:9181784-9181803 None:intergenic 35.0%
!!! GCTACTTTTGAAGAGTTTCA+TGG - chr2_4:9182075-9182094 Msa0313740:intron 35.0%
AATGAGTAATGACTTATCCC+TGG - chr2_4:9182416-9182435 Msa0313740:intron 35.0%
AGGATCCCCTCTTTATTATT+AGG - chr2_4:9182493-9182512 Msa0313740:intron 35.0%
TCGAAGATTAATCTCATAGC+GGG + chr2_4:9182891-9182910 None:intergenic 35.0%
CTCGAAGATTAATCTCATAG+CGG + chr2_4:9182892-9182911 None:intergenic 35.0%
! ACTATGAGTGGATTCATTGT+TGG - chr2_4:9183305-9183324 Msa0313740:intron 35.0%
!!! GTAGTGTTCCACTTTTTTGA+TGG - chr2_4:9183381-9183400 Msa0313740:intron 35.0%
!!! TTCCACTTTTTTGATGGTCT+TGG - chr2_4:9183387-9183406 Msa0313740:intron 35.0%
ATCCAAGACCATCAAAAAAG+TGG + chr2_4:9183392-9183411 None:intergenic 35.0%
! GGTCTTGGATCATTAGTTTA+CGG - chr2_4:9183402-9183421 Msa0313740:intron 35.0%
! ATCATTAGTTTACGGCTCTA+AGG - chr2_4:9183410-9183429 Msa0313740:intron 35.0%
! TCATTAGTTTACGGCTCTAA+GGG - chr2_4:9183411-9183430 Msa0313740:intron 35.0%
!! GAAAGCGTTAGAGTGAATAT+TGG - chr2_4:9183494-9183513 Msa0313740:intron 35.0%
TAAGATTAGGTAAGGGATCA+TGG + chr2_4:9183607-9183626 None:intergenic 35.0%
ATCGAATAGGGTCAAAAACA+CGG + chr2_4:9183744-9183763 None:intergenic 35.0%
GATTTCAGACTTCATCGAAT+AGG + chr2_4:9183757-9183776 None:intergenic 35.0%
! ATGAAGTCTGAAATCCGTTA+GGG - chr2_4:9183762-9183781 Msa0313740:intron 35.0%
ACGTGATATTTGACTGACAA+GGG + chr2_4:9183792-9183811 None:intergenic 35.0%
AACGTGATATTTGACTGACA+AGG + chr2_4:9183793-9183812 None:intergenic 35.0%
TGGTATTAAATTGCATCGCA+TGG + chr2_4:9183869-9183888 None:intergenic 35.0%
!! AGAGTGATAACATTTGGTGT+TGG - chr2_4:9183897-9183916 Msa0313740:intron 35.0%
GACATAATTCGAGAAAACGT+TGG - chr2_4:9183978-9183997 Msa0313740:intron 35.0%
TACATATGTGGTAGCAATTG+CGG - chr2_4:9184477-9184496 Msa0313740:intron 35.0%
GTCTAAACTAGTCAAGAACA+TGG - chr2_4:9184635-9184654 Msa0313740:intron 35.0%
CCTTATTGTATGCCACTAAA+CGG + chr2_4:9184662-9184681 None:intergenic 35.0%
CGTTTAGTGGCATACAATAA+GGG - chr2_4:9184660-9184679 Msa0313740:intron 35.0%
GACAACTTCAACCATTATCA+GGG - chr2_4:9184940-9184959 Msa0313740:CDS 35.0%
TTACACTTCTCTCACAACTA+AGG - chr2_4:9185051-9185070 Msa0313740:CDS 35.0%
GATGTAGATGGTTAGACCAA+TGG - chr2_4:9178808-9178827 Msa0313740:three_prime_UTR 40.0%
!!! TTGTGACAAAGGGTTTTGGA+TGG + chr2_4:9178956-9178975 None:intergenic 40.0%
! TAGTACTTAGTCGGTTCTCT+TGG + chr2_4:9179021-9179040 None:intergenic 40.0%
TGAAACTAGTGTGCTCTTGT+GGG + chr2_4:9179068-9179087 None:intergenic 40.0%
ATGAAACTAGTGTGCTCTTG+TGG + chr2_4:9179069-9179088 None:intergenic 40.0%
! GAGCACACTAGTTTCATTCA+AGG - chr2_4:9179072-9179091 Msa0313740:three_prime_UTR 40.0%
TTTGTTCATAGGAAGTTGGG+TGG - chr2_4:9179233-9179252 Msa0313740:CDS 40.0%
!! CAGGTTTCCAAGAGTATTTG+AGG + chr2_4:9179350-9179369 None:intergenic 40.0%
GATTAGGCGTGCTATAATGT+TGG - chr2_4:9179661-9179680 Msa0313740:CDS 40.0%
!!! TGTGTGTGTGTAGTTTTGAC+GGG - chr2_4:9179842-9179861 Msa0313740:intron 40.0%
ATTCACTGAGTCTGAACATG+TGG - chr2_4:9179914-9179933 Msa0313740:intron 40.0%
TTCACTGAGTCTGAACATGT+GGG - chr2_4:9179915-9179934 Msa0313740:intron 40.0%
GTCTTGTATGATTCATGCGT+CGG - chr2_4:9179945-9179964 Msa0313740:intron 40.0%
TGCTTCTCTCCTTAAAAAGC+TGG + chr2_4:9179986-9180005 None:intergenic 40.0%
AACGCATGGCGTAAATGAAA+AGG + chr2_4:9180166-9180185 None:intergenic 40.0%
! TTTTCATTTACGCCATGCGT+TGG - chr2_4:9180165-9180184 Msa0313740:intron 40.0%
ATACTTGAAGAACCAACGCA+TGG + chr2_4:9180180-9180199 None:intergenic 40.0%
! AGTGTTTCTGCAAATCATGG+TGG + chr2_4:9180323-9180342 None:intergenic 40.0%
! CGTAGTGTTTCTGCAAATCA+TGG + chr2_4:9180326-9180345 None:intergenic 40.0%
! TGGTGGATATGCTAGAATCA+TGG + chr2_4:9180381-9180400 None:intergenic 40.0%
! GAAGAGTATGTTTGGTATGG+TGG + chr2_4:9180398-9180417 None:intergenic 40.0%
CAAGTCTATGTCAAACGTGT+TGG - chr2_4:9180596-9180615 Msa0313740:intron 40.0%
GACATAAACTTCAGTAGACC+TGG + chr2_4:9180687-9180706 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + chr2_4:9180959-9180978 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr2_4:9181179-9181198 None:intergenic 40.0%
CCGGTTTAATTGACCTACTT+TGG + chr2_4:9181365-9181384 None:intergenic 40.0%
TCAATGGCCCAAGAATATAG+TGG - chr2_4:9181748-9181767 Msa0313740:intron 40.0%
!! GCATTAGCACTTAGCTTTGT+GGG + chr2_4:9181866-9181885 None:intergenic 40.0%
!! AGCATTAGCACTTAGCTTTG+TGG + chr2_4:9181867-9181886 None:intergenic 40.0%
TCCAACTTGTAATCACAGGT+TGG + chr2_4:9182470-9182489 None:intergenic 40.0%
! AACCTGTGATTACAAGTTGG+AGG - chr2_4:9182469-9182488 Msa0313740:intron 40.0%
! ACCTGTGATTACAAGTTGGA+GGG - chr2_4:9182470-9182489 Msa0313740:intron 40.0%
GACTTGTCAACATTATTCCG+TGG - chr2_4:9182609-9182628 Msa0313740:intron 40.0%
TGTCAACATTATTCCGTGGA+TGG - chr2_4:9182613-9182632 Msa0313740:intron 40.0%
CTTTCTAACCCGCCATAATT+AGG - chr2_4:9182811-9182830 Msa0313740:intron 40.0%
!! TTAATCTTCGAGTTGGCAGT+AGG - chr2_4:9182900-9182919 Msa0313740:intron 40.0%
AAAAAGAGATTCCATGGGAC+AGG - chr2_4:9183084-9183103 Msa0313740:intron 40.0%
AAAGATTCAAACCTGTCCCA+TGG + chr2_4:9183098-9183117 None:intergenic 40.0%
AATCCACTCATAGTCGATGT+TGG + chr2_4:9183299-9183318 None:intergenic 40.0%
!! CATTAGTTTACGGCTCTAAG+GGG - chr2_4:9183412-9183431 Msa0313740:intron 40.0%
! ATACTATAGGTCCTTTTGGG+AGG + chr2_4:9183452-9183471 None:intergenic 40.0%
ATTAGGTAAGGGATCATGGT+AGG + chr2_4:9183603-9183622 None:intergenic 40.0%
! GATGAAGTCTGAAATCCGTT+AGG - chr2_4:9183761-9183780 Msa0313740:intron 40.0%
ACTATACCGCACACCTTATT+TGG - chr2_4:9183953-9183972 Msa0313740:intron 40.0%
TGTCAACCAAATAAGGTGTG+CGG + chr2_4:9183962-9183981 None:intergenic 40.0%
TGGAAATGCATGGAAAGGAA+TGG - chr2_4:9184031-9184050 Msa0313740:intron 40.0%
!!! ACATGCTGGTTTTCAACTCA+TGG - chr2_4:9184054-9184073 Msa0313740:intron 40.0%
! TGGTTTTCAACTCATGGCAT+TGG - chr2_4:9184060-9184079 Msa0313740:intron 40.0%
!! TTTTCAACTCATGGCATTGG+TGG - chr2_4:9184063-9184082 Msa0313740:intron 40.0%
TACGTGTATGCTTGGTATCA+CGG - chr2_4:9184357-9184376 Msa0313740:CDS 40.0%
CGGTGGATATGTTAAAAGCA+CGG + chr2_4:9184440-9184459 None:intergenic 40.0%
GTAGCCTATGTTTGGTATCA+CGG + chr2_4:9184460-9184479 None:intergenic 40.0%
CCACATATGTAGCCTATGTT+TGG + chr2_4:9184468-9184487 None:intergenic 40.0%
CCAAACATAGGCTACATATG+TGG - chr2_4:9184465-9184484 Msa0313740:intron 40.0%
!! AATGGAAGTATCGGTGTACA+TGG + chr2_4:9184523-9184542 None:intergenic 40.0%
CCGTTTAGTGGCATACAATA+AGG - chr2_4:9184659-9184678 Msa0313740:intron 40.0%
ACAATAAGGGATTGACCACT+TGG - chr2_4:9184673-9184692 Msa0313740:intron 40.0%
CAATAAGGGATTGACCACTT+GGG - chr2_4:9184674-9184693 Msa0313740:intron 40.0%
ATTGACCACTTGGGCTAAAT+GGG - chr2_4:9184683-9184702 Msa0313740:intron 40.0%
! GGCACTTACTGATAATGAGT+AGG + chr2_4:9184762-9184781 None:intergenic 40.0%
GGACAACTTCAACCATTATC+AGG - chr2_4:9184939-9184958 Msa0313740:CDS 40.0%
GGATATGTTGACCCTGATAA+TGG + chr2_4:9184954-9184973 None:intergenic 40.0%
GATCACCACTATAGGAAGAA+GGG + chr2_4:9185088-9185107 None:intergenic 40.0%
TGATCACCACTATAGGAAGA+AGG + chr2_4:9185089-9185108 None:intergenic 40.0%
TACCAGGATTACCTGATACT+TGG - chr2_4:9185138-9185157 Msa0313740:CDS 40.0%
TTCCAAGTATCAGGTAATCC+TGG + chr2_4:9185143-9185162 None:intergenic 40.0%
ACATGTAGAGTGCAGCATAT+AGG + chr2_4:9185172-9185191 None:intergenic 40.0%
! GGGATTGTGACAAAGGGTTT+TGG + chr2_4:9178960-9178979 None:intergenic 45.0%
! TTGCACCCATTTGCTACTAC+TGG + chr2_4:9179213-9179232 None:intergenic 45.0%
CTTGGTAAGGCACATGAATC+AGG + chr2_4:9179369-9179388 None:intergenic 45.0%
CTGATTCATGTGCCTTACCA+AGG - chr2_4:9179367-9179386 Msa0313740:CDS 45.0%
ACAGTCTACAGTGACATTCC+AGG - chr2_4:9180005-9180024 Msa0313740:intron 45.0%
! ATGGGTCAGTTATTTCGGGA+CGG + chr2_4:9180769-9180788 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr2_4:9180961-9180980 Msa0313740:intron 45.0%
ATTTCATACTACCTCCGTCC+CGG + chr2_4:9180978-9180997 None:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG - chr2_4:9181367-9181386 Msa0313740:intron 45.0%
AAATAATACTCCCTCCGTCC+CGG + chr2_4:9181384-9181403 None:intergenic 45.0%
ACTTATCCCTGGAAGTTGAC+AGG - chr2_4:9182427-9182446 Msa0313740:intron 45.0%
! CTTGTAATCACAGGTTGGCA+TGG + chr2_4:9182465-9182484 None:intergenic 45.0%
GCCAACCTGTGATTACAAGT+TGG - chr2_4:9182466-9182485 Msa0313740:intron 45.0%
TCCCTCCAACTTGTAATCAC+AGG + chr2_4:9182474-9182493 None:intergenic 45.0%
! TGTGATTACAAGTTGGAGGG+AGG - chr2_4:9182473-9182492 Msa0313740:intron 45.0%
TTTCATACTACGGCCATCCA+CGG + chr2_4:9182629-9182648 None:intergenic 45.0%
! TGTCCAACATCGACTATGAG+TGG - chr2_4:9183293-9183312 Msa0313740:intron 45.0%
! AGTCTGAAATCCGTTAGGGT+CGG - chr2_4:9183766-9183785 Msa0313740:intron 45.0%
!! TGGTGTTGGTGTATTTGTGC+AGG - chr2_4:9183911-9183930 Msa0313740:intron 45.0%
GGTGTATTTGTGCAGGACTA+TGG - chr2_4:9183918-9183937 Msa0313740:intron 45.0%
ACATTGGACTCTATTGTCGC+TGG - chr2_4:9184011-9184030 Msa0313740:intron 45.0%
CTATTGTCGCTGGAAATGCA+TGG - chr2_4:9184021-9184040 Msa0313740:intron 45.0%
ATGGAAAGGAATGGACATGC+TGG - chr2_4:9184040-9184059 Msa0313740:intron 45.0%
ACCCACAAAGGATCATCACA+GGG - chr2_4:9184086-9184105 Msa0313740:intron 45.0%
TTGATTGGGATGCGATTGCA+TGG - chr2_4:9184320-9184339 Msa0313740:CDS 45.0%
TCCACCGTGATACCAAACAT+AGG - chr2_4:9184453-9184472 Msa0313740:intron 45.0%
CAAGAACATGGACCGTTTAG+TGG - chr2_4:9184647-9184666 Msa0313740:intron 45.0%
GATTGACCACTTGGGCTAAA+TGG - chr2_4:9184682-9184701 Msa0313740:intron 45.0%
ATCAACCCATTTAGCCCAAG+TGG + chr2_4:9184691-9184710 None:intergenic 45.0%
TTGTGACTTGAACAGGGGAA+AGG - chr2_4:9184887-9184906 Msa0313740:intron 45.0%
TCCTATAGTGGTGATCATGC+AGG - chr2_4:9185092-9185111 Msa0313740:CDS 45.0%
GTAATCCTGGTAAGCACCAA+TGG + chr2_4:9185130-9185149 None:intergenic 45.0%
! AGGAGTTGGTTCCAAGTATC+AGG + chr2_4:9185152-9185171 None:intergenic 45.0%
AGAGTGCAGCATATAGGAGT+TGG + chr2_4:9185166-9185185 None:intergenic 45.0%
!!! ATAAATAATTTTTTTTTGAA+AGG + chr2_4:9179544-9179563 None:intergenic 5.0%
!!! TAAAAATAAAAATTGATTTT+TGG - chr2_4:9180456-9180475 Msa0313740:intron 5.0%
!! AATATATTATATAAATTCAA+TGG - chr2_4:9181732-9181751 Msa0313740:intron 5.0%
!!! TATCATATTTTTTTTTATAA+AGG - chr2_4:9182014-9182033 Msa0313740:intron 5.0%
!!! ATCATATTTTTTTTTATAAA+GGG - chr2_4:9182015-9182034 Msa0313740:intron 5.0%
!! CTTGGTGTGGTGGGTGATAT+TGG + chr2_4:9179003-9179022 None:intergenic 50.0%
! CTTAGTCGGTTCTCTTGGTG+TGG + chr2_4:9179016-9179035 None:intergenic 50.0%
GGGCAGCTTGAATCATAGAG+AGG + chr2_4:9179273-9179292 None:intergenic 50.0%
! GTCAGTTATTTCGGGACGGA+GGG + chr2_4:9180765-9180784 None:intergenic 50.0%
TTTCTGTACTACCTCCGTCC+CGG - chr2_4:9181158-9181177 Msa0313740:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr2_4:9181175-9181194 None:intergenic 50.0%
GTCAATTAAACCGGGACGGA+GGG - chr2_4:9181371-9181390 Msa0313740:intron 50.0%
CTCCTTGCAGCTGCACTTTA+CGG + chr2_4:9181803-9181822 None:intergenic 50.0%
TCACAGCCTGTCAACTTCCA+GGG + chr2_4:9182436-9182455 None:intergenic 50.0%
TGGAAGTTGACAGGCTGTGA+GGG - chr2_4:9182436-9182455 Msa0313740:intron 50.0%
!! ATAGGTCCTTTTGGGAGGCA+GGG + chr2_4:9183447-9183466 None:intergenic 50.0%
!! TATAGGTCCTTTTGGGAGGC+AGG + chr2_4:9183448-9183467 None:intergenic 50.0%
AAACAACTAGGACTCGCGAG+AGG + chr2_4:9183719-9183738 None:intergenic 50.0%
CGTTGGACGAGTGCTTACAT+TGG - chr2_4:9183995-9184014 Msa0313740:intron 50.0%
GTCGCTGGAAATGCATGGAA+AGG - chr2_4:9184026-9184045 Msa0313740:intron 50.0%
GACCCACAAAGGATCATCAC+AGG - chr2_4:9184085-9184104 Msa0313740:intron 50.0%
CCCCTGTGATGATCCTTTGT+GGG + chr2_4:9184090-9184109 None:intergenic 50.0%
CCCACAAAGGATCATCACAG+GGG - chr2_4:9184087-9184106 Msa0313740:intron 50.0%
ACCCCTGTGATGATCCTTTG+TGG + chr2_4:9184091-9184110 None:intergenic 50.0%
GCCTATGTTTGGTATCACGG+TGG + chr2_4:9184457-9184476 None:intergenic 50.0%
ACTTGAACAGGGGAAAGGAG+TGG - chr2_4:9184892-9184911 Msa0313740:intron 50.0%
TCAGGGTCAACATATCCAGC+AGG - chr2_4:9184957-9184976 Msa0313740:CDS 50.0%
GCACACCCTTCTTCCTATAG+TGG - chr2_4:9185080-9185099 Msa0313740:CDS 50.0%
GCCTGCATGATCACCACTAT+AGG + chr2_4:9185096-9185115 None:intergenic 50.0%
CAGGCAATGATTGCAGCCAT+TGG - chr2_4:9185111-9185130 Msa0313740:CDS 50.0%
! GTCGGTTCTCTTGGTGTGGT+GGG + chr2_4:9179012-9179031 None:intergenic 55.0%
! AGTCGGTTCTCTTGGTGTGG+TGG + chr2_4:9179013-9179032 None:intergenic 55.0%
! GGTCAGTTATTTCGGGACGG+AGG + chr2_4:9180766-9180785 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr2_4:9180964-9180983 Msa0313740:intron 55.0%
GGTCAATTAAACCGGGACGG+AGG - chr2_4:9181370-9181389 Msa0313740:intron 55.0%
CACCGTAAAGTGCAGCTGCA+AGG - chr2_4:9181798-9181817 Msa0313740:intron 55.0%
CTCACAGCCTGTCAACTTCC+AGG + chr2_4:9182437-9182456 None:intergenic 55.0%
CTGGAAGTTGACAGGCTGTG+AGG - chr2_4:9182435-9182454 Msa0313740:intron 55.0%
!! TGGCATTGGTGGACCCACAA+AGG - chr2_4:9184074-9184093 Msa0313740:intron 55.0%
CTTGATGGAGGTAGACCTGC+TGG + chr2_4:9184975-9184994 None:intergenic 55.0%
! TGCAGCCATTGGTGCTTACC+AGG - chr2_4:9185122-9185141 Msa0313740:CDS 55.0%
GGTCAGTTATTCCGGGACGG+AGG + chr2_4:9181172-9181191 None:intergenic 60.0%
CTGTCTCCCTGCCTCCCAAA+AGG - chr2_4:9183438-9183457 Msa0313740:intron 60.0%
CTGACAAGGGCCGACCCTAA+CGG + chr2_4:9183779-9183798 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 9178794 9185505 9178794 ID=Msa0313740;Name=Msa0313740
chr2_4 mRNA 9178794 9185505 9178794 ID=Msa0313740-mRNA-1;Parent=Msa0313740;Name=Msa0313740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=311|1|1|1|1|1|5|312|360
chr2_4 exon 9178794 9179397 9178794 ID=Msa0313740-mRNA-1:exon:3558;Parent=Msa0313740-mRNA-1
chr2_4 exon 9179527 9179685 9179527 ID=Msa0313740-mRNA-1:exon:3557;Parent=Msa0313740-mRNA-1
chr2_4 exon 9180191 9180366 9180191 ID=Msa0313740-mRNA-1:exon:3556;Parent=Msa0313740-mRNA-1
chr2_4 exon 9184273 9184444 9184273 ID=Msa0313740-mRNA-1:exon:3555;Parent=Msa0313740-mRNA-1
chr2_4 exon 9184911 9185505 9184911 ID=Msa0313740-mRNA-1:exon:3554;Parent=Msa0313740-mRNA-1
chr2_4 five_prime_UTR 9185195 9185505 9185195 ID=Msa0313740-mRNA-1:five_prime_utr;Parent=Msa0313740-mRNA-1
chr2_4 CDS 9184911 9185194 9184911 ID=Msa0313740-mRNA-1:cds;Parent=Msa0313740-mRNA-1
chr2_4 CDS 9184273 9184444 9184273 ID=Msa0313740-mRNA-1:cds;Parent=Msa0313740-mRNA-1
chr2_4 CDS 9180191 9180366 9180191 ID=Msa0313740-mRNA-1:cds;Parent=Msa0313740-mRNA-1
chr2_4 CDS 9179527 9179685 9179527 ID=Msa0313740-mRNA-1:cds;Parent=Msa0313740-mRNA-1
chr2_4 CDS 9179106 9179397 9179106 ID=Msa0313740-mRNA-1:cds;Parent=Msa0313740-mRNA-1
chr2_4 three_prime_UTR 9178794 9179105 9178794 ID=Msa0313740-mRNA-1:three_prime_utr;Parent=Msa0313740-mRNA-1
Gene Sequence

>Msa0313740

ATGGGTTTCAGAGCAATTACTCTGCTTCTTCTATTCTCTCTTTTTCATCAACTTCTACTTGGTGAAGCAAAGTTCAGTAATGTAAGTAGCTTAAGAGGGAAAAAGCCAGTAGTAGCAAATGGGTGCAATTTGTTCATAGGAAGTTGGGTGGTTGACCCGTCTTATCCTCTCTATGATTCAAGCTGCCCCTTCATTGATCCTGAATTTAATTGTCAAAAATATGGAAGACCTGACAAACAATACCTCAAATACTCTTGGAAACCTGATTCATGTGCCTTACCAAGTTTTGACGGGAAAGATTTTCTGAACAAATGGAGGGGTAAGAAGATAATGTTTGTGGGTGATTCACTGAGTCTGAACATGTGGGAATCACTGTCTTGTATGATTCATGCGTCGGTGCCCAATGCAAAGACCAGCTTTTTAAGGAGAGAAGCACAGTCTACAGTGACATTCCAGGACTATGGAGTAACTATACAACTATACCGCACACCTTATTTGGTTGACATAATTCGAGAAAACGTTGGACGAGTGCTTACATTGGACTCTATTGTCGCTGGAAATGCATGGAAAGGAATGGACATGCTGGTTTTCAACTCATGGCATTGGTGGACCCACAAAGGATCATCACAGGGATGGGATTATATAAGAGATGGGTCTAAACTAGTCAAGAACATGGACCGTTTAGTGGCATACAATAAGGGATTGACCACTTGGGCTAAATGGGTTGATCTCAATGTTGATCCTACCAAAACTAAAGTCTTCTTTCAAGGCGTTTCTCCTACTCATTATCAGGGAAAGGAGTGGAATCAACCAAAAAATAGTTGTAGTGGACAACTTCAACCATTATCAGGGTCAACATATCCAGCAGGTCTACCTCCATCAAGTAACATATTGAACAATGTATTGAAGAGTATGAAAACACCAGTTTATCTACTTGATATTACACTTCTCTCACAACTAAGGAAAGATGCACACCCTTCTTCCTATAGTGGTGATCATGCAGGCAATGATTGCAGCCATTGGTGCTTACCAGGATTACCTGATACTTGGAACCAACTCCTATATGCTGCACTCTACATGTGA
Protein sequence

>Msa0313740

MGFRAITLLLLFSLFHQLLLGEAKFSNVSSLRGKKPVVANGCNLFIGSWVVDPSYPLYDSSCPFIDPEFNCQKYGRPDKQYLKYSWKPDSCALPSFDGKDFLNKWRGKKIMFVGDSLSLNMWESLSCMIHASVPNAKTSFLRREAQSTVTFQDYGVTIQLYRTPYLVDIIRENVGRVLTLDSIVAGNAWKGMDMLVFNSWHWWTHKGSSQGWDYIRDGSKLVKNMDRLVAYNKGLTTWAKWVDLNVDPTKTKVFFQGVSPTHYQGKEWNQPKNSCSGQLQPLSGSTYPAGLPPSSNILNNVLKSMKTPVYLLDITLLSQLRKDAHPSSYSGDHAGNDCSHWCLPGLPDTWNQLLYAALYM*