AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1037440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037440 MtrunA17_Chr7g0276381 91.279 172 8 3 15 185 15 180 1.12e-109 310
Msa1037440 MtrunA17_Chr8g0345861 56.962 158 52 3 25 182 27 168 4.58e-50 159
Msa1037440 MtrunA17_Chr4g0004811 35.172 145 86 1 38 182 9 145 2.81e-25 95.5
Msa1037440 MtrunA17_Chr7g0275281 31.410 156 89 3 29 184 24 161 3.77e-21 85.1
Msa1037440 MtrunA17_Chr5g0412411 29.661 118 78 2 69 182 67 183 1.65e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037440 AT2G46820.2 63.265 147 45 2 36 182 35 172 1.62e-56 176
Msa1037440 AT2G46820.1 63.265 147 45 2 36 182 35 172 1.62e-56 176
Msa1037440 AT1G52220.1 47.525 101 52 1 82 182 56 155 1.84e-26 99.0
Msa1037440 AT1G52220.2 47.525 101 51 2 82 182 56 154 1.08e-24 94.4
Msa1037440 AT4G01150.1 32.919 161 87 4 25 182 20 162 4.12e-23 90.5
Msa1037440 AT4G38100.1 35.789 95 58 1 91 185 101 192 1.17e-14 69.3
Msa1037440 AT4G38100.2 35.789 95 58 1 91 185 61 152 1.88e-14 67.8
Msa1037440 AT1G52220.4 46.479 71 37 1 82 152 56 125 2.69e-13 64.3
Msa1037440 AT1G52220.3 52.000 50 24 0 133 182 77 126 2.01e-12 61.6

Find 78 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATAGTCTTTAGAAATTC+TGG 0.176189 7_1:+74073486 None:intergenic
GATAGGCTTCCTTTAATTCC+TGG 0.266011 7_1:-74072932 Msa1037440:CDS
TATATAGTTCTCACACAAAA+TGG 0.281786 7_1:+74072365 None:intergenic
TCTTCATTCACTCTTATTGA+TGG 0.283095 7_1:-74073823 Msa1037440:CDS
ACAGAAAGCGGTGGTCTTCC+AGG 0.290167 7_1:+74073714 None:intergenic
TCTCAATTGTTTACCGCAAA+TGG 0.297286 7_1:+74072452 None:intergenic
GTTGCATTATGGGGCTCAGC+TGG 0.318460 7_1:-74073301 Msa1037440:CDS
TCAAGAACCCCAGGAATTAA+AGG 0.320013 7_1:+74072923 None:intergenic
TAGCAGGTACGGTTGCATTA+TGG 0.324488 7_1:-74073312 Msa1037440:CDS
AGCAGGTACGGTTGCATTAT+GGG 0.359470 7_1:-74073311 Msa1037440:CDS
ATAGGCTTCCTTTAATTCCT+GGG 0.369347 7_1:-74072931 Msa1037440:CDS
AAGAGTGAATGAAGAGAAAG+TGG 0.378344 7_1:+74073831 None:intergenic
TGGTCTTCCAGGGACGAGTA+TGG 0.381671 7_1:+74073725 None:intergenic
TAAACAATTGAGAGAGATAA+TGG 0.386475 7_1:-74072442 Msa1037440:three_prime_UTR
CCAAAGTGTGGCATAGCATA+TGG 0.394362 7_1:-74073991 Msa1037440:five_prime_UTR
GCTTTGATACGCAAAATAAA+AGG 0.394589 7_1:-74072656 Msa1037440:CDS
TTCTACAGTTATCCCATTTG+CGG 0.401187 7_1:-74072465 Msa1037440:three_prime_UTR
TTGCATTATGGGGCTCAGCT+GGG 0.412672 7_1:-74073300 Msa1037440:CDS
GAAAGTGGAAGATGAGGCTG+AGG 0.422883 7_1:+74073846 None:intergenic
CTCAATTGTTTACCGCAAAT+GGG 0.433433 7_1:+74072453 None:intergenic
CTCGTAGGCATTGGCTACAC+TGG 0.433498 7_1:-74072899 Msa1037440:CDS
AGCCACTCATTTCTTTCATA+CGG 0.453220 7_1:+74074017 None:intergenic
ATAATCTATCTGTATTGTAT+TGG 0.457171 7_1:-74073902 Msa1037440:five_prime_UTR
TGATGAAACAGGCTATTGAT+AGG 0.459015 7_1:-74072949 Msa1037440:intron
ACCGATCTGGCTTGAAAACT+AGG 0.468356 7_1:+74072757 None:intergenic
TGGAGAAGCAGAGTGTCTGC+AGG 0.469794 7_1:+74073792 None:intergenic
TACTCTAACATAACATGTAT+AGG 0.470416 7_1:-74072329 Msa1037440:three_prime_UTR
AACTCAAATCAACAAGCAAA+TGG 0.473012 7_1:-74073872 Msa1037440:exon
CCATATGCTATGCCACACTT+TGG 0.480950 7_1:+74073991 None:intergenic
TGCATTATGGGGCTCAGCTG+GGG 0.492851 7_1:-74073299 Msa1037440:CDS
TGGGACTGAACAGGTGGAGG+GGG 0.502807 7_1:+74073745 None:intergenic
TGCTCTAGCGGTAGCAGGTA+CGG 0.502934 7_1:-74073323 Msa1037440:CDS
ATCTGCCTCTGTTTCTGTTG+TGG 0.505718 7_1:+74073563 None:intergenic
TTCAGTCCCATACTCGTCCC+TGG 0.506421 7_1:-74073732 Msa1037440:CDS
GTTCTTGAACTCGTAGGCAT+TGG 0.511626 7_1:-74072908 Msa1037440:CDS
ATGTTAATTAGATCTACAAA+TGG 0.516084 7_1:+74073960 None:intergenic
GGACGAGTATGGGACTGAAC+AGG 0.517757 7_1:+74073736 None:intergenic
TAGATTACATTTGCATAACA+TGG 0.518324 7_1:+74072547 None:intergenic
TGCTCGCAATGTTATGTCCA+TGG 0.518500 7_1:-74073595 Msa1037440:CDS
TTGCTTGTTGATTTGAGTTG+AGG 0.521425 7_1:+74073876 None:intergenic
AGTGGAAGATGAGGCTGAGG+AGG 0.528576 7_1:+74073849 None:intergenic
GGCACTGTTAAAGACATCAC+TGG 0.529095 7_1:-74072635 Msa1037440:CDS
GGTCTTCCAGGGACGAGTAT+GGG 0.539747 7_1:+74073726 None:intergenic
AGAATCAGTGACAGTAGTAC+TGG 0.542464 7_1:+74073509 None:intergenic
GTGAGTGCTCTAGCGGTAGC+AGG 0.543399 7_1:-74073328 Msa1037440:CDS
AAGAGCATAGCATACCGATC+TGG 0.544761 7_1:+74072744 None:intergenic
GTATGGGACTGAACAGGTGG+AGG 0.553903 7_1:+74073742 None:intergenic
TAGGCTTCCTTTAATTCCTG+GGG 0.554551 7_1:-74072930 Msa1037440:CDS
TGTTGTGGTACTTGAAGCCA+TGG 0.559345 7_1:+74073578 None:intergenic
TCGTAGGCATTGGCTACACT+GGG 0.562769 7_1:-74072898 Msa1037440:CDS
AGTTGAGGCAACCTCTGTTG+TGG 0.572988 7_1:+74073536 None:intergenic
TATGGGACTGAACAGGTGGA+GGG 0.576384 7_1:+74073743 None:intergenic
GGATAGTGTCTCTGCTGACT+TGG 0.581587 7_1:+74074038 None:intergenic
AGATTACATTTGCATAACAT+GGG 0.583347 7_1:+74072548 None:intergenic
CAGAAAGCGGTGGTCTTCCA+GGG 0.585352 7_1:+74073715 None:intergenic
TGTATTTGACTTACAGAAAG+CGG 0.587004 7_1:+74073702 None:intergenic
GATCGACAGCTAAAATACAC+TGG 0.596735 7_1:-74072612 Msa1037440:exon
CGAGTATGGGACTGAACAGG+TGG 0.598195 7_1:+74073739 None:intergenic
AGTAGTACTGGTGTCAGTTG+AGG 0.598742 7_1:+74073521 None:intergenic
ATGGGACTGAACAGGTGGAG+GGG 0.599012 7_1:+74073744 None:intergenic
GCAGGTACGGTTGCATTATG+GGG 0.603721 7_1:-74073310 Msa1037440:CDS
TGAAGAGAAAGTGGAAGATG+AGG 0.604075 7_1:+74073840 None:intergenic
AGTTCTCACACAAAATGGAA+TGG 0.605682 7_1:+74072370 None:intergenic
GTTGGAAGGCTCACACATTG+TGG 0.610597 7_1:+74073772 None:intergenic
CCTGGGGTTCTTGAACTCGT+AGG 0.612235 7_1:-74072914 Msa1037440:CDS
CCTACGAGTTCAAGAACCCC+AGG 0.617642 7_1:+74072914 None:intergenic
GGAGAAGCAGAGTGTCTGCA+GGG 0.624844 7_1:+74073793 None:intergenic
ATCGACAGCTAAAATACACT+GGG 0.636797 7_1:-74072611 Msa1037440:exon
GTATGCAGTGAGTGCTCTAG+CGG 0.647497 7_1:-74073335 Msa1037440:CDS
GCACTGTTAAAGACATCACT+GGG 0.652022 7_1:-74072634 Msa1037440:CDS
GGCAGATGCAGCCACAACAG+AGG 0.654208 7_1:-74073547 Msa1037440:CDS
GACAGCTAAAATACACTGGG+TGG 0.660584 7_1:-74072608 Msa1037440:exon
TGAGTGGCTCATCCAAAGTG+TGG 0.671961 7_1:-74074003 Msa1037440:five_prime_UTR
ATCCGTATGAAAGAAATGAG+TGG 0.680937 7_1:-74074019 Msa1037440:five_prime_UTR
AAGTACCACAACAGAAACAG+AGG 0.689454 7_1:-74073568 Msa1037440:CDS
ATTTGACTTACAGAAAGCGG+TGG 0.698122 7_1:+74073705 None:intergenic
GAAGCAGAGTGTCTGCAGGG+AGG 0.716854 7_1:+74073796 None:intergenic
CGTAGGCATTGGCTACACTG+GGG 0.765097 7_1:-74072897 Msa1037440:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAATATATAATTGC+AGG - chr7_1:74073689-74073708 Msa1037440:intron 10.0%
!! ATTAATAATATATAATTGCA+GGG - chr7_1:74073690-74073709 Msa1037440:intron 10.0%
!! AATTAATAATATATAATTGC+AGG - chr7_1:74073689-74073708 Msa1037440:intron 10.0%
!! ATTAATAATATATAATTGCA+GGG - chr7_1:74073690-74073709 Msa1037440:intron 10.0%
!!! AAGAAAAGTGTATAAATAAA+AGG - chr7_1:74073183-74073202 Msa1037440:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr7_1:74073247-74073266 Msa1037440:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr7_1:74073248-74073267 Msa1037440:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+AGG - chr7_1:74073183-74073202 Msa1037440:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr7_1:74073247-74073266 Msa1037440:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr7_1:74073248-74073267 Msa1037440:intron 15.0%
!! ATGTTAATTAGATCTACAAA+TGG + chr7_1:74072414-74072433 None:intergenic 20.0%
!! ATAATCTATCTGTATTGTAT+TGG - chr7_1:74072469-74072488 Msa1037440:three_prime_UTR 20.0%
!! ATATAATTGAATTTGTGTGT+TGG - chr7_1:74072730-74072749 Msa1037440:intron 20.0%
!! TATATTATATGCAAAAAGGA+AGG + chr7_1:74073114-74073133 None:intergenic 20.0%
!! GTAGTATATTATATGCAAAA+AGG + chr7_1:74073118-74073137 None:intergenic 20.0%
!! TGTATAAATAAAAGGAAAAG+TGG - chr7_1:74073191-74073210 Msa1037440:intron 20.0%
!! AAAAGTGGAATATATTGTAT+TGG - chr7_1:74073206-74073225 Msa1037440:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr7_1:74073207-74073226 Msa1037440:intron 20.0%
!!! TTGAAATGAATCAGTTATTT+TGG - chr7_1:74073294-74073313 Msa1037440:CDS 20.0%
!!! TGAAATGAATCAGTTATTTT+GGG - chr7_1:74073295-74073314 Msa1037440:CDS 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr7_1:74073317-74073336 Msa1037440:CDS 20.0%
!! AATAATCTGTTTCCATAATT+TGG - chr7_1:74073654-74073673 Msa1037440:intron 20.0%
!!! AGAAGTTACATTTAATTTTC+TGG + chr7_1:74073851-74073870 None:intergenic 20.0%
!!! AATGGAACAATATTTTATCT+TGG - chr7_1:74073947-74073966 Msa1037440:five_prime_UTR 20.0%
!! ATGTTAATTAGATCTACAAA+TGG + chr7_1:74072414-74072433 None:intergenic 20.0%
!! ATAATCTATCTGTATTGTAT+TGG - chr7_1:74072469-74072488 Msa1037440:three_prime_UTR 20.0%
!! ATATAATTGAATTTGTGTGT+TGG - chr7_1:74072730-74072749 Msa1037440:intron 20.0%
!! TATATTATATGCAAAAAGGA+AGG + chr7_1:74073114-74073133 None:intergenic 20.0%
!! GTAGTATATTATATGCAAAA+AGG + chr7_1:74073118-74073137 None:intergenic 20.0%
!! TGTATAAATAAAAGGAAAAG+TGG - chr7_1:74073191-74073210 Msa1037440:intron 20.0%
!! AAAAGTGGAATATATTGTAT+TGG - chr7_1:74073206-74073225 Msa1037440:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr7_1:74073207-74073226 Msa1037440:intron 20.0%
!!! TTGAAATGAATCAGTTATTT+TGG - chr7_1:74073294-74073313 Msa1037440:CDS 20.0%
!!! TGAAATGAATCAGTTATTTT+GGG - chr7_1:74073295-74073314 Msa1037440:CDS 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr7_1:74073317-74073336 Msa1037440:CDS 20.0%
!! AATAATCTGTTTCCATAATT+TGG - chr7_1:74073654-74073673 Msa1037440:intron 20.0%
!!! AGAAGTTACATTTAATTTTC+TGG + chr7_1:74073851-74073870 None:intergenic 20.0%
!!! AATGGAACAATATTTTATCT+TGG - chr7_1:74073947-74073966 Msa1037440:five_prime_UTR 20.0%
!! TGTATAGTCTTTAGAAATTC+TGG + chr7_1:74072888-74072907 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr7_1:74073316-74073335 Msa1037440:CDS 25.0%
! CAATCTATTGAACCAAATTA+TGG + chr7_1:74073669-74073688 None:intergenic 25.0%
! AATAATATATAATTGCAGGG+AGG - chr7_1:74073693-74073712 Msa1037440:intron 25.0%
! AGATTACATTTGCATAACAT+GGG + chr7_1:74073826-74073845 None:intergenic 25.0%
! TAGATTACATTTGCATAACA+TGG + chr7_1:74073827-74073846 None:intergenic 25.0%
! TAAACAATTGAGAGAGATAA+TGG - chr7_1:74073929-74073948 Msa1037440:five_prime_UTR 25.0%
! TATATAGTTCTCACACAAAA+TGG + chr7_1:74074009-74074028 None:intergenic 25.0%
! TACTCTAACATAACATGTAT+AGG - chr7_1:74074042-74074061 Msa1037440:five_prime_UTR 25.0%
!! TGTATAGTCTTTAGAAATTC+TGG + chr7_1:74072888-74072907 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr7_1:74073316-74073335 Msa1037440:CDS 25.0%
! CAATCTATTGAACCAAATTA+TGG + chr7_1:74073669-74073688 None:intergenic 25.0%
! AATAATATATAATTGCAGGG+AGG - chr7_1:74073693-74073712 Msa1037440:intron 25.0%
! AGATTACATTTGCATAACAT+GGG + chr7_1:74073826-74073845 None:intergenic 25.0%
! TAGATTACATTTGCATAACA+TGG + chr7_1:74073827-74073846 None:intergenic 25.0%
! TAAACAATTGAGAGAGATAA+TGG - chr7_1:74073929-74073948 Msa1037440:five_prime_UTR 25.0%
! TATATAGTTCTCACACAAAA+TGG + chr7_1:74074009-74074028 None:intergenic 25.0%
! TACTCTAACATAACATGTAT+AGG - chr7_1:74074042-74074061 Msa1037440:five_prime_UTR 25.0%
AACTCAAATCAACAAGCAAA+TGG - chr7_1:74072499-74072518 Msa1037440:three_prime_UTR 30.0%
TCTTCATTCACTCTTATTGA+TGG - chr7_1:74072548-74072567 Msa1037440:three_prime_UTR 30.0%
! TGTATTTGACTTACAGAAAG+CGG + chr7_1:74072672-74072691 None:intergenic 30.0%
ATAGTATATGTGTGTTGAGT+TGG - chr7_1:74072965-74072984 Msa1037440:intron 30.0%
GATTGGATGTAATGTATAGT+GGG - chr7_1:74072997-74073016 Msa1037440:intron 30.0%
GCTTTGATACGCAAAATAAA+AGG - chr7_1:74073715-74073734 Msa1037440:intron 30.0%
AACTCAAATCAACAAGCAAA+TGG - chr7_1:74072499-74072518 Msa1037440:three_prime_UTR 30.0%
TCTTCATTCACTCTTATTGA+TGG - chr7_1:74072548-74072567 Msa1037440:three_prime_UTR 30.0%
! TGTATTTGACTTACAGAAAG+CGG + chr7_1:74072672-74072691 None:intergenic 30.0%
ATAGTATATGTGTGTTGAGT+TGG - chr7_1:74072965-74072984 Msa1037440:intron 30.0%
GATTGGATGTAATGTATAGT+GGG - chr7_1:74072997-74073016 Msa1037440:intron 30.0%
GCTTTGATACGCAAAATAAA+AGG - chr7_1:74073715-74073734 Msa1037440:intron 30.0%
ATCCGTATGAAAGAAATGAG+TGG - chr7_1:74072352-74072371 Msa1037440:three_prime_UTR 35.0%
AGCCACTCATTTCTTTCATA+CGG + chr7_1:74072357-74072376 None:intergenic 35.0%
!! TTGCTTGTTGATTTGAGTTG+AGG + chr7_1:74072498-74072517 None:intergenic 35.0%
AAGAGTGAATGAAGAGAAAG+TGG + chr7_1:74072543-74072562 None:intergenic 35.0%
!! ATATGTGTGTTGAGTTGGAT+TGG - chr7_1:74072970-74072989 Msa1037440:intron 35.0%
GGATTGGATGTAATGTATAG+TGG - chr7_1:74072996-74073015 Msa1037440:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr7_1:74073147-74073166 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr7_1:74073148-74073167 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr7_1:74073161-74073180 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr7_1:74073330-74073349 Msa1037440:CDS 35.0%
TGATGAAACAGGCTATTGAT+AGG - chr7_1:74073422-74073441 Msa1037440:intron 35.0%
ATAGGCTTCCTTTAATTCCT+GGG - chr7_1:74073440-74073459 Msa1037440:intron 35.0%
ATCTGCAGAAGATACAAAGT+AGG + chr7_1:74073506-74073525 None:intergenic 35.0%
ATCGACAGCTAAAATACACT+GGG - chr7_1:74073760-74073779 Msa1037440:CDS 35.0%
GCATAACATGGGAAAAAGTA+TGG + chr7_1:74073815-74073834 None:intergenic 35.0%
TTCTACAGTTATCCCATTTG+CGG - chr7_1:74073906-74073925 Msa1037440:five_prime_UTR 35.0%
CTCAATTGTTTACCGCAAAT+GGG + chr7_1:74073921-74073940 None:intergenic 35.0%
TCTCAATTGTTTACCGCAAA+TGG + chr7_1:74073922-74073941 None:intergenic 35.0%
AGTTCTCACACAAAATGGAA+TGG + chr7_1:74074004-74074023 None:intergenic 35.0%
ATCCGTATGAAAGAAATGAG+TGG - chr7_1:74072352-74072371 Msa1037440:three_prime_UTR 35.0%
AGCCACTCATTTCTTTCATA+CGG + chr7_1:74072357-74072376 None:intergenic 35.0%
!! TTGCTTGTTGATTTGAGTTG+AGG + chr7_1:74072498-74072517 None:intergenic 35.0%
AAGAGTGAATGAAGAGAAAG+TGG + chr7_1:74072543-74072562 None:intergenic 35.0%
!! ATATGTGTGTTGAGTTGGAT+TGG - chr7_1:74072970-74072989 Msa1037440:intron 35.0%
GGATTGGATGTAATGTATAG+TGG - chr7_1:74072996-74073015 Msa1037440:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr7_1:74073147-74073166 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr7_1:74073148-74073167 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr7_1:74073161-74073180 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr7_1:74073330-74073349 Msa1037440:CDS 35.0%
TGATGAAACAGGCTATTGAT+AGG - chr7_1:74073422-74073441 Msa1037440:intron 35.0%
ATAGGCTTCCTTTAATTCCT+GGG - chr7_1:74073440-74073459 Msa1037440:intron 35.0%
ATCTGCAGAAGATACAAAGT+AGG + chr7_1:74073506-74073525 None:intergenic 35.0%
ATCGACAGCTAAAATACACT+GGG - chr7_1:74073760-74073779 Msa1037440:CDS 35.0%
GCATAACATGGGAAAAAGTA+TGG + chr7_1:74073815-74073834 None:intergenic 35.0%
TTCTACAGTTATCCCATTTG+CGG - chr7_1:74073906-74073925 Msa1037440:five_prime_UTR 35.0%
CTCAATTGTTTACCGCAAAT+GGG + chr7_1:74073921-74073940 None:intergenic 35.0%
TCTCAATTGTTTACCGCAAA+TGG + chr7_1:74073922-74073941 None:intergenic 35.0%
AGTTCTCACACAAAATGGAA+TGG + chr7_1:74074004-74074023 None:intergenic 35.0%
TGAAGAGAAAGTGGAAGATG+AGG + chr7_1:74072534-74072553 None:intergenic 40.0%
! ATTTGACTTACAGAAAGCGG+TGG + chr7_1:74072669-74072688 None:intergenic 40.0%
AAGTACCACAACAGAAACAG+AGG - chr7_1:74072803-74072822 Msa1037440:intron 40.0%
AGAATCAGTGACAGTAGTAC+TGG + chr7_1:74072865-74072884 None:intergenic 40.0%
!! TGTGTTGAGTTGGATTGGAT+TGG - chr7_1:74072975-74072994 Msa1037440:intron 40.0%
! TGAGTTGGATTGGATTGGAT+TGG - chr7_1:74072980-74072999 Msa1037440:intron 40.0%
ATAATATACTACCTCCGTCC+CGG - chr7_1:74073126-74073145 Msa1037440:intron 40.0%
CCGGTATAATTGACCTACTT+TGG - chr7_1:74073145-74073164 Msa1037440:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr7_1:74073331-74073350 Msa1037440:CDS 40.0%
GATAGGCTTCCTTTAATTCC+TGG - chr7_1:74073439-74073458 Msa1037440:intron 40.0%
TAGGCTTCCTTTAATTCCTG+GGG - chr7_1:74073441-74073460 Msa1037440:intron 40.0%
TCAAGAACCCCAGGAATTAA+AGG + chr7_1:74073451-74073470 None:intergenic 40.0%
TCGTATCTTCTTCTTTGCAG+TGG - chr7_1:74073577-74073596 Msa1037440:CDS 40.0%
!! ACCTAGTTTTCAAGCCAGAT+CGG - chr7_1:74073613-74073632 Msa1037440:intron 40.0%
GCACTGTTAAAGACATCACT+GGG - chr7_1:74073737-74073756 Msa1037440:CDS 40.0%
GATCGACAGCTAAAATACAC+TGG - chr7_1:74073759-74073778 Msa1037440:CDS 40.0%
TGAAGAGAAAGTGGAAGATG+AGG + chr7_1:74072534-74072553 None:intergenic 40.0%
! ATTTGACTTACAGAAAGCGG+TGG + chr7_1:74072669-74072688 None:intergenic 40.0%
AAGTACCACAACAGAAACAG+AGG - chr7_1:74072803-74072822 Msa1037440:intron 40.0%
AGAATCAGTGACAGTAGTAC+TGG + chr7_1:74072865-74072884 None:intergenic 40.0%
!! TGTGTTGAGTTGGATTGGAT+TGG - chr7_1:74072975-74072994 Msa1037440:intron 40.0%
! TGAGTTGGATTGGATTGGAT+TGG - chr7_1:74072980-74072999 Msa1037440:intron 40.0%
ATAATATACTACCTCCGTCC+CGG - chr7_1:74073126-74073145 Msa1037440:intron 40.0%
CCGGTATAATTGACCTACTT+TGG - chr7_1:74073145-74073164 Msa1037440:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr7_1:74073331-74073350 Msa1037440:CDS 40.0%
GATAGGCTTCCTTTAATTCC+TGG - chr7_1:74073439-74073458 Msa1037440:intron 40.0%
TAGGCTTCCTTTAATTCCTG+GGG - chr7_1:74073441-74073460 Msa1037440:intron 40.0%
TCAAGAACCCCAGGAATTAA+AGG + chr7_1:74073451-74073470 None:intergenic 40.0%
TCGTATCTTCTTCTTTGCAG+TGG - chr7_1:74073577-74073596 Msa1037440:CDS 40.0%
!! ACCTAGTTTTCAAGCCAGAT+CGG - chr7_1:74073613-74073632 Msa1037440:intron 40.0%
GCACTGTTAAAGACATCACT+GGG - chr7_1:74073737-74073756 Msa1037440:CDS 40.0%
GATCGACAGCTAAAATACAC+TGG - chr7_1:74073759-74073778 Msa1037440:CDS 40.0%
CCATATGCTATGCCACACTT+TGG + chr7_1:74072383-74072402 None:intergenic 45.0%
CCAAAGTGTGGCATAGCATA+TGG - chr7_1:74072380-74072399 Msa1037440:three_prime_UTR 45.0%
!! GTGTGTTGGTTGATTCACTC+AGG - chr7_1:74072744-74072763 Msa1037440:intron 45.0%
! GTTGGTTGATTCACTCAGGT+CGG - chr7_1:74072748-74072767 Msa1037440:intron 45.0%
TGCTCGCAATGTTATGTCCA+TGG - chr7_1:74072776-74072795 Msa1037440:CDS 45.0%
TGTTGTGGTACTTGAAGCCA+TGG + chr7_1:74072796-74072815 None:intergenic 45.0%
!! ATCTGCCTCTGTTTCTGTTG+TGG + chr7_1:74072811-74072830 None:intergenic 45.0%
!! AGTAGTACTGGTGTCAGTTG+AGG + chr7_1:74072853-74072872 None:intergenic 45.0%
TAGCAGGTACGGTTGCATTA+TGG - chr7_1:74073059-74073078 Msa1037440:intron 45.0%
AGCAGGTACGGTTGCATTAT+GGG - chr7_1:74073060-74073079 Msa1037440:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr7_1:74073143-74073162 None:intergenic 45.0%
ATAATATACTCCCTCCGTCC+CGG + chr7_1:74073352-74073371 None:intergenic 45.0%
GCATCTGCATCTGATGAAAC+AGG - chr7_1:74073411-74073430 Msa1037440:intron 45.0%
GTTCTTGAACTCGTAGGCAT+TGG - chr7_1:74073463-74073482 Msa1037440:intron 45.0%
! ACCGATCTGGCTTGAAAACT+AGG + chr7_1:74073617-74073636 None:intergenic 45.0%
! AAGAGCATAGCATACCGATC+TGG + chr7_1:74073630-74073649 None:intergenic 45.0%
GGCACTGTTAAAGACATCAC+TGG - chr7_1:74073736-74073755 Msa1037440:CDS 45.0%
GACAGCTAAAATACACTGGG+TGG - chr7_1:74073763-74073782 Msa1037440:CDS 45.0%
CCATATGCTATGCCACACTT+TGG + chr7_1:74072383-74072402 None:intergenic 45.0%
CCAAAGTGTGGCATAGCATA+TGG - chr7_1:74072380-74072399 Msa1037440:three_prime_UTR 45.0%
!! GTGTGTTGGTTGATTCACTC+AGG - chr7_1:74072744-74072763 Msa1037440:intron 45.0%
! GTTGGTTGATTCACTCAGGT+CGG - chr7_1:74072748-74072767 Msa1037440:intron 45.0%
TGCTCGCAATGTTATGTCCA+TGG - chr7_1:74072776-74072795 Msa1037440:CDS 45.0%
TGTTGTGGTACTTGAAGCCA+TGG + chr7_1:74072796-74072815 None:intergenic 45.0%
!! ATCTGCCTCTGTTTCTGTTG+TGG + chr7_1:74072811-74072830 None:intergenic 45.0%
!! AGTAGTACTGGTGTCAGTTG+AGG + chr7_1:74072853-74072872 None:intergenic 45.0%
TAGCAGGTACGGTTGCATTA+TGG - chr7_1:74073059-74073078 Msa1037440:intron 45.0%
AGCAGGTACGGTTGCATTAT+GGG - chr7_1:74073060-74073079 Msa1037440:intron 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr7_1:74073143-74073162 None:intergenic 45.0%
ATAATATACTCCCTCCGTCC+CGG + chr7_1:74073352-74073371 None:intergenic 45.0%
GCATCTGCATCTGATGAAAC+AGG - chr7_1:74073411-74073430 Msa1037440:intron 45.0%
GTTCTTGAACTCGTAGGCAT+TGG - chr7_1:74073463-74073482 Msa1037440:intron 45.0%
! ACCGATCTGGCTTGAAAACT+AGG + chr7_1:74073617-74073636 None:intergenic 45.0%
! AAGAGCATAGCATACCGATC+TGG + chr7_1:74073630-74073649 None:intergenic 45.0%
GGCACTGTTAAAGACATCAC+TGG - chr7_1:74073736-74073755 Msa1037440:CDS 45.0%
GACAGCTAAAATACACTGGG+TGG - chr7_1:74073763-74073782 Msa1037440:CDS 45.0%
! GGATAGTGTCTCTGCTGACT+TGG + chr7_1:74072336-74072355 None:intergenic 50.0%
TGAGTGGCTCATCCAAAGTG+TGG - chr7_1:74072368-74072387 Msa1037440:three_prime_UTR 50.0%
GAAAGTGGAAGATGAGGCTG+AGG + chr7_1:74072528-74072547 None:intergenic 50.0%
GTTGGAAGGCTCACACATTG+TGG + chr7_1:74072602-74072621 None:intergenic 50.0%
TATGGGACTGAACAGGTGGA+GGG + chr7_1:74072631-74072650 None:intergenic 50.0%
AGTTGAGGCAACCTCTGTTG+TGG + chr7_1:74072838-74072857 None:intergenic 50.0%
GTATGCAGTGAGTGCTCTAG+CGG - chr7_1:74073036-74073055 Msa1037440:intron 50.0%
GCAGGTACGGTTGCATTATG+GGG - chr7_1:74073061-74073080 Msa1037440:intron 50.0%
TTGCATTATGGGGCTCAGCT+GGG - chr7_1:74073071-74073090 Msa1037440:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr7_1:74073335-74073354 Msa1037440:CDS 50.0%
!! TCGTAGGCATTGGCTACACT+GGG - chr7_1:74073473-74073492 Msa1037440:intron 50.0%
! GGATAGTGTCTCTGCTGACT+TGG + chr7_1:74072336-74072355 None:intergenic 50.0%
TGAGTGGCTCATCCAAAGTG+TGG - chr7_1:74072368-74072387 Msa1037440:three_prime_UTR 50.0%
GAAAGTGGAAGATGAGGCTG+AGG + chr7_1:74072528-74072547 None:intergenic 50.0%
GTTGGAAGGCTCACACATTG+TGG + chr7_1:74072602-74072621 None:intergenic 50.0%
TATGGGACTGAACAGGTGGA+GGG + chr7_1:74072631-74072650 None:intergenic 50.0%
AGTTGAGGCAACCTCTGTTG+TGG + chr7_1:74072838-74072857 None:intergenic 50.0%
GTATGCAGTGAGTGCTCTAG+CGG - chr7_1:74073036-74073055 Msa1037440:intron 50.0%
GCAGGTACGGTTGCATTATG+GGG - chr7_1:74073061-74073080 Msa1037440:intron 50.0%
TTGCATTATGGGGCTCAGCT+GGG - chr7_1:74073071-74073090 Msa1037440:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr7_1:74073335-74073354 Msa1037440:CDS 50.0%
!! TCGTAGGCATTGGCTACACT+GGG - chr7_1:74073473-74073492 Msa1037440:intron 50.0%
AGTGGAAGATGAGGCTGAGG+AGG + chr7_1:74072525-74072544 None:intergenic 55.0%
! GGAGAAGCAGAGTGTCTGCA+GGG + chr7_1:74072581-74072600 None:intergenic 55.0%
! TGGAGAAGCAGAGTGTCTGC+AGG + chr7_1:74072582-74072601 None:intergenic 55.0%
ATGGGACTGAACAGGTGGAG+GGG + chr7_1:74072630-74072649 None:intergenic 55.0%
GTATGGGACTGAACAGGTGG+AGG + chr7_1:74072632-74072651 None:intergenic 55.0%
CGAGTATGGGACTGAACAGG+TGG + chr7_1:74072635-74072654 None:intergenic 55.0%
GGACGAGTATGGGACTGAAC+AGG + chr7_1:74072638-74072657 None:intergenic 55.0%
TTCAGTCCCATACTCGTCCC+TGG - chr7_1:74072639-74072658 Msa1037440:CDS 55.0%
GGTCTTCCAGGGACGAGTAT+GGG + chr7_1:74072648-74072667 None:intergenic 55.0%
TGGTCTTCCAGGGACGAGTA+TGG + chr7_1:74072649-74072668 None:intergenic 55.0%
CAGAAAGCGGTGGTCTTCCA+GGG + chr7_1:74072659-74072678 None:intergenic 55.0%
ACAGAAAGCGGTGGTCTTCC+AGG + chr7_1:74072660-74072679 None:intergenic 55.0%
TGCTCTAGCGGTAGCAGGTA+CGG - chr7_1:74073048-74073067 Msa1037440:intron 55.0%
GTTGCATTATGGGGCTCAGC+TGG - chr7_1:74073070-74073089 Msa1037440:intron 55.0%
TGCATTATGGGGCTCAGCTG+GGG - chr7_1:74073072-74073091 Msa1037440:intron 55.0%
GGTCAATTATACCGGGACGG+AGG + chr7_1:74073140-74073159 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr7_1:74073339-74073358 Msa1037440:CDS 55.0%
CCTACGAGTTCAAGAACCCC+AGG + chr7_1:74073460-74073479 None:intergenic 55.0%
CCTGGGGTTCTTGAACTCGT+AGG - chr7_1:74073457-74073476 Msa1037440:intron 55.0%
!! CTCGTAGGCATTGGCTACAC+TGG - chr7_1:74073472-74073491 Msa1037440:intron 55.0%
!! CGTAGGCATTGGCTACACTG+GGG - chr7_1:74073474-74073493 Msa1037440:intron 55.0%
AGTGGAAGATGAGGCTGAGG+AGG + chr7_1:74072525-74072544 None:intergenic 55.0%
! GGAGAAGCAGAGTGTCTGCA+GGG + chr7_1:74072581-74072600 None:intergenic 55.0%
! TGGAGAAGCAGAGTGTCTGC+AGG + chr7_1:74072582-74072601 None:intergenic 55.0%
ATGGGACTGAACAGGTGGAG+GGG + chr7_1:74072630-74072649 None:intergenic 55.0%
GTATGGGACTGAACAGGTGG+AGG + chr7_1:74072632-74072651 None:intergenic 55.0%
CGAGTATGGGACTGAACAGG+TGG + chr7_1:74072635-74072654 None:intergenic 55.0%
GGACGAGTATGGGACTGAAC+AGG + chr7_1:74072638-74072657 None:intergenic 55.0%
TTCAGTCCCATACTCGTCCC+TGG - chr7_1:74072639-74072658 Msa1037440:CDS 55.0%
GGTCTTCCAGGGACGAGTAT+GGG + chr7_1:74072648-74072667 None:intergenic 55.0%
TGGTCTTCCAGGGACGAGTA+TGG + chr7_1:74072649-74072668 None:intergenic 55.0%
CAGAAAGCGGTGGTCTTCCA+GGG + chr7_1:74072659-74072678 None:intergenic 55.0%
ACAGAAAGCGGTGGTCTTCC+AGG + chr7_1:74072660-74072679 None:intergenic 55.0%
TGCTCTAGCGGTAGCAGGTA+CGG - chr7_1:74073048-74073067 Msa1037440:intron 55.0%
GTTGCATTATGGGGCTCAGC+TGG - chr7_1:74073070-74073089 Msa1037440:intron 55.0%
TGCATTATGGGGCTCAGCTG+GGG - chr7_1:74073072-74073091 Msa1037440:intron 55.0%
GGTCAATTATACCGGGACGG+AGG + chr7_1:74073140-74073159 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr7_1:74073339-74073358 Msa1037440:CDS 55.0%
CCTACGAGTTCAAGAACCCC+AGG + chr7_1:74073460-74073479 None:intergenic 55.0%
CCTGGGGTTCTTGAACTCGT+AGG - chr7_1:74073457-74073476 Msa1037440:intron 55.0%
!! CTCGTAGGCATTGGCTACAC+TGG - chr7_1:74073472-74073491 Msa1037440:intron 55.0%
!! CGTAGGCATTGGCTACACTG+GGG - chr7_1:74073474-74073493 Msa1037440:intron 55.0%
! GAAGCAGAGTGTCTGCAGGG+AGG + chr7_1:74072578-74072597 None:intergenic 60.0%
GTGGAGGGGGAAGAGTTGGA+AGG + chr7_1:74072616-74072635 None:intergenic 60.0%
ACAGGTGGAGGGGGAAGAGT+TGG + chr7_1:74072620-74072639 None:intergenic 60.0%
TGGGACTGAACAGGTGGAGG+GGG + chr7_1:74072629-74072648 None:intergenic 60.0%
GGCAGATGCAGCCACAACAG+AGG - chr7_1:74072824-74072843 Msa1037440:intron 60.0%
GTGAGTGCTCTAGCGGTAGC+AGG - chr7_1:74073043-74073062 Msa1037440:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr7_1:74073338-74073357 Msa1037440:CDS 60.0%
! GAAGCAGAGTGTCTGCAGGG+AGG + chr7_1:74072578-74072597 None:intergenic 60.0%
GTGGAGGGGGAAGAGTTGGA+AGG + chr7_1:74072616-74072635 None:intergenic 60.0%
ACAGGTGGAGGGGGAAGAGT+TGG + chr7_1:74072620-74072639 None:intergenic 60.0%
TGGGACTGAACAGGTGGAGG+GGG + chr7_1:74072629-74072648 None:intergenic 60.0%
GGCAGATGCAGCCACAACAG+AGG - chr7_1:74072824-74072843 Msa1037440:intron 60.0%
GTGAGTGCTCTAGCGGTAGC+AGG - chr7_1:74073043-74073062 Msa1037440:intron 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr7_1:74073338-74073357 Msa1037440:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 74072323 74074070 74072323 ID=Msa1037440;Name=Msa1037440
chr7_1 mRNA 74072323 74074070 74072323 ID=Msa1037440-mRNA-1;Parent=Msa1037440;Name=Msa1037440-mRNA-1;_AED=0.07;_eAED=0.07;_QI=195|1|1|1|1|1|6|299|185
chr7_1 exon 74072323 74072682 74072323 ID=Msa1037440-mRNA-1:exon:18564;Parent=Msa1037440-mRNA-1
chr7_1 exon 74072759 74072796 74072759 ID=Msa1037440-mRNA-1:exon:18563;Parent=Msa1037440-mRNA-1
chr7_1 exon 74072898 74072960 74072898 ID=Msa1037440-mRNA-1:exon:18562;Parent=Msa1037440-mRNA-1
chr7_1 exon 74073291 74073377 74073291 ID=Msa1037440-mRNA-1:exon:18561;Parent=Msa1037440-mRNA-1
chr7_1 exon 74073479 74073627 74073479 ID=Msa1037440-mRNA-1:exon:18560;Parent=Msa1037440-mRNA-1
chr7_1 exon 74073716 74074070 74073716 ID=Msa1037440-mRNA-1:exon:18559;Parent=Msa1037440-mRNA-1
chr7_1 five_prime_UTR 74073876 74074070 74073876 ID=Msa1037440-mRNA-1:five_prime_utr;Parent=Msa1037440-mRNA-1
chr7_1 CDS 74073716 74073875 74073716 ID=Msa1037440-mRNA-1:cds;Parent=Msa1037440-mRNA-1
chr7_1 CDS 74073479 74073627 74073479 ID=Msa1037440-mRNA-1:cds;Parent=Msa1037440-mRNA-1
chr7_1 CDS 74073291 74073377 74073291 ID=Msa1037440-mRNA-1:cds;Parent=Msa1037440-mRNA-1
chr7_1 CDS 74072898 74072960 74072898 ID=Msa1037440-mRNA-1:cds;Parent=Msa1037440-mRNA-1
chr7_1 CDS 74072759 74072796 74072759 ID=Msa1037440-mRNA-1:cds;Parent=Msa1037440-mRNA-1
chr7_1 CDS 74072622 74072682 74072622 ID=Msa1037440-mRNA-1:cds;Parent=Msa1037440-mRNA-1
chr7_1 three_prime_UTR 74072323 74072621 74072323 ID=Msa1037440-mRNA-1:three_prime_utr;Parent=Msa1037440-mRNA-1
Gene Sequence

>Msa1037440

ATGGCCTCCTCAGCCTCATCTTCCACTTTCTCTTCATTCACTCTTATTGATGGAAAGCCTCCCTGCAGACACTCTGCTTCTCCACAATGTGTGAGCCTTCCAACTCTTCCCCCTCCACCTGTTCAGTCCCATACTCGTCCCTGGAAGACCACCGCTTTCTGTCGGAAGATTGCTCGCAATGTTATGTCCATGGCTTCAAGTACCACAACAGAAACAGAGGCAGATGCAGCCACAACAGAGGTTGCCTCAACTGACACCAGTACTACTGTCACTGATTCTCCAGAATTTCTAAAGACTATACAACAAACTTGGGATAAAGTTGAAGACAAGTATGCAGTGAGTGCTCTAGCGGTAGCAGGTACGGTTGCATTATGGGGCTCAGCTGGGGTGATCTCAGCTATTGATAGGCTTCCTTTAATTCCTGGGGTTCTTGAACTCGTAGGCATTGGCTACACTGGGTGGTTTGCATACAAGAACCTAGTTTTCAAGCCAGATCGGGAGGCTTTGATACGCAAAATAAAAGGCACTGTTAAAGACATCACTGGGATCGACAGCTAA

Protein sequence

>Msa1037440

MASSASSSTFSSFTLIDGKPPCRHSASPQCVSLPTLPPPPVQSHTRPWKTTAFCRKIARNVMSMASSTTTETEADAATTEVASTDTSTTVTDSPEFLKTIQQTWDKVEDKYAVSALAVAGTVALWGSAGVISAIDRLPLIPGVLELVGIGYTGWFAYKNLVFKPDREALIRKIKGTVKDITGIDS*