Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727930 | AES97246.1 | 86.786 | 840 | 72 | 5 | 1 | 835 | 1 | 806 | 0.0 | 1407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727930 | sp|Q9SSE9|JMJ25_ARATH | 45.492 | 721 | 286 | 14 | 157 | 816 | 209 | 883 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727930 | G7JY87 | 86.786 | 840 | 72 | 5 | 1 | 835 | 1 | 806 | 0.0 | 1407 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0727930 | TR | Jumonji |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0727930 | 0.815925 | 7.200011e-52 | -8.615850e-47 |
| Msa0015710 | Msa0727930 | 0.803638 | 3.167849e-49 | -8.615850e-47 |
| Msa0017510 | Msa0727930 | 0.804940 | 1.697171e-49 | -8.615850e-47 |
| Msa0024550 | Msa0727930 | 0.831808 | 1.353451e-55 | -8.615850e-47 |
| Msa0094850 | Msa0727930 | 0.804020 | 2.639113e-49 | -8.615850e-47 |
| Msa0110970 | Msa0727930 | 0.815034 | 1.136701e-51 | -8.615850e-47 |
| Msa0112570 | Msa0727930 | 0.810349 | 1.204567e-50 | -8.615850e-47 |
| Msa0120400 | Msa0727930 | 0.847600 | 1.043616e-59 | -8.615850e-47 |
| Msa0662240 | Msa0727930 | 0.801914 | 7.192017e-49 | -8.615850e-47 |
| Msa0722850 | Msa0727930 | 0.808401 | 3.153985e-50 | -8.615850e-47 |
| Msa0727930 | Msa0769180 | 0.855288 | 6.975893e-62 | -8.615850e-47 |
| Msa0727930 | Msa0789830 | 0.808926 | 2.435992e-50 | -8.615850e-47 |
| Msa0727930 | Msa0828560 | 0.821468 | 3.973793e-53 | -8.615850e-47 |
| Msa0727930 | Msa0828830 | 0.808057 | 3.733320e-50 | -8.615850e-47 |
| Msa0727930 | Msa0843220 | 0.814787 | 1.289826e-51 | -8.615850e-47 |
| Msa0727930 | Msa0847540 | 0.901921 | 1.642581e-78 | -8.615850e-47 |
| Msa0727930 | Msa0861510 | 0.809799 | 1.582903e-50 | -8.615850e-47 |
| Msa0727930 | Msa0861600 | 0.803852 | 2.860141e-49 | -8.615850e-47 |
| Msa0727930 | Msa0880140 | 0.802767 | 4.799189e-49 | -8.615850e-47 |
| Msa0727930 | Msa0903760 | 0.818443 | 1.955266e-52 | -8.615850e-47 |
| Msa0727930 | Msa0967380 | 0.853936 | 1.718431e-61 | -8.615850e-47 |
| Msa0727930 | Msa1005870 | 0.838831 | 2.276920e-57 | -8.615850e-47 |
| Msa0727930 | Msa1021570 | 0.822579 | 2.196423e-53 | -8.615850e-47 |
| Msa0727930 | Msa1043370 | 0.821876 | 3.198498e-53 | -8.615850e-47 |
| Msa0727930 | Msa1047980 | 0.840135 | 1.043334e-57 | -8.615850e-47 |
| Msa0727930 | Msa1060310 | 0.805618 | 1.223784e-49 | -8.615850e-47 |
| Msa0727930 | Msa1092010 | 0.834654 | 2.645642e-56 | -8.615850e-47 |
| Msa0727930 | Msa1135390 | 0.822106 | 2.829341e-53 | -8.615850e-47 |
| Msa0727930 | Msa1140210 | 0.800327 | 1.518219e-48 | -8.615850e-47 |
| Msa0727930 | Msa1236410 | 0.815882 | 7.360899e-52 | -8.615850e-47 |
| Msa0727930 | Msa1366340 | 0.819256 | 1.277789e-52 | -8.615850e-47 |
| Msa0727930 | Msa1374550 | 0.818793 | 1.628724e-52 | -8.615850e-47 |
| Msa0727930 | Msa1431850 | 0.802149 | 6.434442e-49 | -8.615850e-47 |
| Msa0727930 | Msa1445190 | 0.807795 | 4.245352e-50 | -8.615850e-47 |
| Msa0124130 | Msa0727930 | 0.802317 | 5.942435e-49 | -8.615850e-47 |
| Msa0156250 | Msa0727930 | 0.829190 | 5.911545e-55 | -8.615850e-47 |
| Msa0157290 | Msa0727930 | 0.805994 | 1.020044e-49 | -8.615850e-47 |
| Msa0164330 | Msa0727930 | 0.813776 | 2.157261e-51 | -8.615850e-47 |
| Msa0197100 | Msa0727930 | 0.831682 | 1.453898e-55 | -8.615850e-47 |
| Msa0221290 | Msa0727930 | 0.833877 | 4.142460e-56 | -8.615850e-47 |
| Msa0385390 | Msa0727930 | 0.828294 | 9.739478e-55 | -8.615850e-47 |
| Msa0392420 | Msa0727930 | 0.808940 | 2.419089e-50 | -8.615850e-47 |
| Msa0392460 | Msa0727930 | 0.809970 | 1.454314e-50 | -8.615850e-47 |
| Msa0415320 | Msa0727930 | 0.848826 | 4.785810e-60 | -8.615850e-47 |
| Msa0451400 | Msa0727930 | 0.812113 | 4.990818e-51 | -8.615850e-47 |
| Msa0239030 | Msa0727930 | 0.844624 | 6.738412e-59 | -8.615850e-47 |
| Msa0276740 | Msa0727930 | 0.834375 | 3.107846e-56 | -8.615850e-47 |
| Msa0316680 | Msa0727930 | 0.834474 | 2.935084e-56 | -8.615850e-47 |
| Msa0345330 | Msa0727930 | 0.802752 | 4.833363e-49 | -8.615850e-47 |
| Msa0363200 | Msa0727930 | 0.800590 | 1.341955e-48 | -8.615850e-47 |
| Msa0487570 | Msa0727930 | 0.807819 | 4.195518e-50 | -8.615850e-47 |
| Msa0487630 | Msa0727930 | 0.807237 | 5.576859e-50 | -8.615850e-47 |
| Msa0513160 | Msa0727930 | 0.802126 | 6.504108e-49 | -8.615850e-47 |
| Msa0523000 | Msa0727930 | 0.824573 | 7.503645e-54 | -8.615850e-47 |
| Msa0591790 | Msa0727930 | 0.814658 | 1.377274e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727930 | MtrunA17_Chr5g0420361 | 85.203 | 838 | 84 | 6 | 1 | 832 | 1 | 804 | 0.0 | 1372 |
| Msa0727930 | MtrunA17_Chr6g0472441 | 67.172 | 792 | 185 | 11 | 50 | 833 | 3 | 727 | 0.0 | 1010 |
| Msa0727930 | MtrunA17_Chr1g0211711 | 71.322 | 673 | 159 | 9 | 161 | 827 | 407 | 1051 | 0.0 | 967 |
| Msa0727930 | MtrunA17_Chr1g0183311 | 69.477 | 688 | 178 | 10 | 160 | 827 | 207 | 882 | 0.0 | 944 |
| Msa0727930 | MtrunA17_Chr5g0426961 | 65.022 | 669 | 184 | 8 | 165 | 826 | 209 | 834 | 0.0 | 846 |
| Msa0727930 | MtrunA17_Chr1g0211661 | 61.889 | 614 | 190 | 9 | 161 | 767 | 289 | 865 | 0.0 | 733 |
| Msa0727930 | MtrunA17_Chr1g0211691 | 65.724 | 566 | 159 | 8 | 160 | 715 | 405 | 945 | 0.0 | 728 |
| Msa0727930 | MtrunA17_Chr5g0448301 | 51.624 | 585 | 222 | 10 | 158 | 737 | 103 | 631 | 0.0 | 546 |
| Msa0727930 | MtrunA17_Chr2g0289121 | 46.981 | 679 | 280 | 19 | 157 | 824 | 210 | 819 | 2.52e-175 | 527 |
| Msa0727930 | MtrunA17_Chr4g0075261 | 45.675 | 659 | 304 | 17 | 179 | 824 | 247 | 864 | 1.43e-170 | 516 |
| Msa0727930 | MtrunA17_Chr7g0275771 | 42.681 | 731 | 332 | 19 | 171 | 824 | 204 | 924 | 1.23e-168 | 513 |
| Msa0727930 | MtrunA17_Chr2g0289031 | 49.767 | 430 | 166 | 7 | 401 | 824 | 8 | 393 | 1.90e-125 | 383 |
| Msa0727930 | MtrunA17_Chr1g0192011 | 36.458 | 672 | 350 | 20 | 180 | 828 | 347 | 964 | 9.69e-114 | 370 |
| Msa0727930 | MtrunA17_Chr2g0281051 | 35.704 | 675 | 380 | 19 | 179 | 816 | 289 | 946 | 1.09e-103 | 343 |
| Msa0727930 | MtrunA17_Chr4g0048531 | 37.566 | 567 | 276 | 17 | 317 | 823 | 727 | 1275 | 4.03e-94 | 322 |
| Msa0727930 | MtrunA17_Chr4g0048531 | 41.250 | 80 | 46 | 1 | 179 | 258 | 347 | 425 | 4.54e-12 | 70.5 |
| Msa0727930 | MtrunA17_Chr1g0147021 | 41.266 | 458 | 228 | 12 | 171 | 618 | 940 | 1366 | 1.90e-88 | 308 |
| Msa0727930 | MtrunA17_Chr1g0147021 | 67.347 | 147 | 48 | 0 | 669 | 815 | 1540 | 1686 | 5.33e-57 | 213 |
| Msa0727930 | MtrunA17_Chr8g0364421 | 47.287 | 258 | 98 | 7 | 207 | 461 | 5 | 227 | 2.09e-62 | 210 |
| Msa0727930 | MtrunA17_Chr1g0211701 | 80.172 | 116 | 23 | 0 | 713 | 828 | 4 | 119 | 5.57e-61 | 203 |
| Msa0727930 | MtrunA17_Chr7g0231061 | 56.886 | 167 | 68 | 2 | 464 | 626 | 11 | 177 | 4.22e-50 | 175 |
| Msa0727930 | MtrunA17_Chr2g0289091 | 72.973 | 111 | 30 | 0 | 679 | 789 | 310 | 420 | 1.02e-49 | 181 |
| Msa0727930 | MtrunA17_Chr2g0289091 | 54.483 | 145 | 61 | 3 | 475 | 615 | 20 | 163 | 2.71e-38 | 148 |
| Msa0727930 | MtrunA17_Chr8g0361381 | 52.105 | 190 | 80 | 6 | 397 | 582 | 26 | 208 | 1.02e-48 | 171 |
| Msa0727930 | MtrunA17_Chr8g0340381 | 56.983 | 179 | 47 | 5 | 499 | 673 | 36 | 188 | 8.92e-45 | 159 |
| Msa0727930 | MtrunA17_Chr8g0361391 | 59.167 | 120 | 47 | 2 | 649 | 767 | 19 | 137 | 2.79e-41 | 149 |
| Msa0727930 | MtrunA17_Chr2g0289041 | 40.476 | 168 | 89 | 5 | 157 | 319 | 35 | 196 | 5.54e-26 | 106 |
| Msa0727930 | MtrunA17_Chr1g0211671 | 74.603 | 63 | 16 | 0 | 766 | 828 | 15 | 77 | 7.63e-25 | 100 |
| Msa0727930 | MtrunA17_Chr3g0119761 | 59.740 | 77 | 31 | 0 | 568 | 644 | 55 | 131 | 1.92e-20 | 88.2 |
| Msa0727930 | MtrunA17_Chr2g0289101 | 39.062 | 128 | 69 | 4 | 230 | 353 | 8 | 130 | 4.07e-18 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727930 | AT3G07610.1 | 45.492 | 721 | 286 | 14 | 157 | 816 | 209 | 883 | 0.0 | 581 |
| Msa0727930 | AT3G07610.3 | 44.054 | 740 | 291 | 15 | 157 | 816 | 209 | 905 | 0.0 | 561 |
| Msa0727930 | AT1G11950.1 | 46.575 | 657 | 289 | 15 | 178 | 828 | 272 | 872 | 0.0 | 554 |
| Msa0727930 | AT1G11950.3 | 46.575 | 657 | 289 | 15 | 178 | 828 | 272 | 872 | 0.0 | 554 |
| Msa0727930 | AT1G62310.1 | 48.352 | 637 | 277 | 15 | 178 | 808 | 288 | 878 | 0.0 | 554 |
| Msa0727930 | AT4G00990.1 | 42.979 | 705 | 338 | 17 | 163 | 823 | 144 | 828 | 8.02e-166 | 503 |
| Msa0727930 | AT1G11950.2 | 44.369 | 586 | 264 | 15 | 178 | 757 | 272 | 801 | 6.49e-148 | 456 |
| Msa0727930 | AT4G00990.3 | 41.832 | 655 | 317 | 17 | 163 | 773 | 144 | 778 | 1.32e-142 | 441 |
| Msa0727930 | AT4G00990.2 | 42.195 | 647 | 310 | 17 | 163 | 765 | 144 | 770 | 1.01e-141 | 439 |
| Msa0727930 | AT3G07610.2 | 41.176 | 493 | 218 | 11 | 157 | 588 | 209 | 690 | 2.26e-102 | 335 |
| Msa0727930 | AT1G09060.2 | 32.489 | 671 | 360 | 23 | 180 | 824 | 287 | 890 | 8.31e-85 | 291 |
| Msa0727930 | AT1G09060.1 | 32.489 | 671 | 360 | 23 | 180 | 824 | 287 | 890 | 8.31e-85 | 291 |
| Msa0727930 | AT1G09060.4 | 32.489 | 671 | 360 | 23 | 180 | 824 | 301 | 904 | 8.97e-85 | 291 |
| Msa0727930 | AT1G09060.3 | 32.489 | 671 | 360 | 23 | 180 | 824 | 301 | 904 | 8.97e-85 | 291 |
| Msa0727930 | AT4G21430.1 | 31.845 | 672 | 362 | 23 | 179 | 823 | 309 | 911 | 7.60e-73 | 258 |
Find 181 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGACTTTACCTGCTTTAA+AGG | 0.105810 | 5_1:+31363195 | None:intergenic |
| ATAAAGGAGGTTATGCTTTA+AGG | 0.151921 | 5_1:-31365909 | Msa0727930:CDS |
| ATTCTGGAACAGTCAAAATT+TGG | 0.160321 | 5_1:-31365049 | Msa0727930:CDS |
| TTCAGATATTCCTTCAATTT+AGG | 0.222589 | 5_1:+31363255 | None:intergenic |
| AAAGTGCATGATTTCTTTAC+TGG | 0.224783 | 5_1:-31364381 | Msa0727930:CDS |
| TTGCTTACCGTTCAATTTAC+AGG | 0.240147 | 5_1:-31361246 | Msa0727930:CDS |
| CAGAGAAGAAGGAGGCTTTA+AGG | 0.245987 | 5_1:-31366320 | Msa0727930:CDS |
| AGATCTAATTGTCTTAAATA+TGG | 0.261093 | 5_1:+31365604 | None:intergenic |
| GGATCTGTATATTCTTTATA+TGG | 0.267565 | 5_1:+31364237 | None:intergenic |
| TCACCTTCATTAGTGGCTTT+TGG | 0.269398 | 5_1:+31364992 | None:intergenic |
| AGAACGTTGTTGACAATTAC+AGG | 0.270674 | 5_1:+31364674 | None:intergenic |
| CTTCGTCGTGGGGAGCTTCT+AGG | 0.285523 | 5_1:-31365178 | Msa0727930:CDS |
| TGCCGGCCAGCCTGAGATTC+TGG | 0.288771 | 5_1:-31365065 | Msa0727930:CDS |
| ATATTATCTTCCTTCTTAAC+AGG | 0.299520 | 5_1:+31364830 | None:intergenic |
| TCTGTGAAATAGTGATTTAC+TGG | 0.328060 | 5_1:+31362052 | None:intergenic |
| CCTTCAGATTTCTGACTTGA+TGG | 0.328947 | 5_1:+31362789 | None:intergenic |
| CATCAAGAAAATAGTTTAGA+TGG | 0.330265 | 5_1:-31363312 | Msa0727930:CDS |
| AGGCAATTGATTGCTTAAAT+TGG | 0.335529 | 5_1:-31364553 | Msa0727930:CDS |
| CTCGATATCTTCGAGATTAA+CGG | 0.335966 | 5_1:+31364886 | None:intergenic |
| AGTGATTTACTGGAAGTTTA+CGG | 0.337301 | 5_1:+31362062 | None:intergenic |
| CTATTTCACAGAGGACAAAT+TGG | 0.360430 | 5_1:-31362041 | Msa0727930:CDS |
| ACCAACTCAGAAATGCAATT+TGG | 0.365415 | 5_1:+31364935 | None:intergenic |
| TTGATTAACTCAAACTCAAT+TGG | 0.365985 | 5_1:+31365145 | None:intergenic |
| ATAGTTTAGATGGTGCTCTA+TGG | 0.368181 | 5_1:-31363302 | Msa0727930:CDS |
| AAGAGGCTTAAGGAGGAGTA+TGG | 0.378678 | 5_1:-31362972 | Msa0727930:intron |
| TTCTGGAACAGTCAAAATTT+GGG | 0.390383 | 5_1:-31365048 | Msa0727930:CDS |
| AGAAGCATTTCGGAGAGTTC+AGG | 0.395049 | 5_1:-31363233 | Msa0727930:CDS |
| TTCAATGGCACTGGAGAAAA+GGG | 0.397011 | 5_1:-31364700 | Msa0727930:CDS |
| TTTCAATGGCACTGGAGAAA+AGG | 0.401004 | 5_1:-31364701 | Msa0727930:CDS |
| TTTGACTGTTCCAGAATCTC+AGG | 0.401026 | 5_1:+31365055 | None:intergenic |
| GCTGGGAACCGGTTGCCATT+TGG | 0.402791 | 5_1:-31364628 | Msa0727930:CDS |
| GTTCTTGAATCAAGTTTGTC+TGG | 0.403712 | 5_1:-31364656 | Msa0727930:CDS |
| GTCTGGTTTAAGCTGGGAAC+CGG | 0.403780 | 5_1:-31364639 | Msa0727930:CDS |
| CAAGTTTGTCTGGTTTAAGC+TGG | 0.407182 | 5_1:-31364646 | Msa0727930:CDS |
| AATTGAACGGTAAGCAAAAT+CGG | 0.410116 | 5_1:+31361252 | None:intergenic |
| TTCTTTACTGGGTACACAAA+TGG | 0.410350 | 5_1:-31364369 | Msa0727930:CDS |
| AGAAGAAAGAAAATCGTGTT+AGG | 0.410426 | 5_1:-31366047 | Msa0727930:CDS |
| AAGAAAATCGAGGTAGGAAA+AGG | 0.412720 | 5_1:-31366119 | Msa0727930:CDS |
| CTAAAGATGAGTGTGCTTAC+TGG | 0.415066 | 5_1:-31365377 | Msa0727930:intron |
| GAATATCTGAAGAAGCATTT+CGG | 0.415903 | 5_1:-31363243 | Msa0727930:CDS |
| GGTTAGTGATTGCATACTTA+AGG | 0.418589 | 5_1:-31361380 | Msa0727930:CDS |
| GTGCTCATCTGAAGCAATTA+CGG | 0.419476 | 5_1:+31363419 | None:intergenic |
| TCATGTTGCTAAAGTGGAAC+TGG | 0.419614 | 5_1:-31363568 | Msa0727930:CDS |
| GGAGCTACATGGTGATAATC+AGG | 0.421783 | 5_1:-31363484 | Msa0727930:CDS |
| ATGGATTTCATCAGGAGCTT+GGG | 0.423317 | 5_1:-31364140 | Msa0727930:CDS |
| CTTGTATCTGATAATAATAA+AGG | 0.430518 | 5_1:-31365925 | Msa0727930:CDS |
| AAGAAGAAGAAGGAACCTAA+TGG | 0.431587 | 5_1:-31365961 | Msa0727930:CDS |
| TATGGATTTCATCAGGAGCT+TGG | 0.432373 | 5_1:-31364141 | Msa0727930:CDS |
| ATTCGAAAGTGAATTGTCAT+TGG | 0.434915 | 5_1:+31364580 | None:intergenic |
| TAAGAGTAAAGTGGTGGAAA+AGG | 0.439117 | 5_1:-31366154 | Msa0727930:CDS |
| AATGAGTAATGCAGAGAAGA+AGG | 0.439727 | 5_1:-31366331 | Msa0727930:CDS |
| ATTTCATCAGGAGCTTGGGC+GGG | 0.443441 | 5_1:-31364136 | Msa0727930:CDS |
| ACCATGATCACCTTCATTAG+TGG | 0.444246 | 5_1:+31364985 | None:intergenic |
| CAATCATAAGAAGAGGCTTA+AGG | 0.445426 | 5_1:-31362982 | Msa0727930:CDS |
| TATTGCTTATGGATTTCATC+AGG | 0.445848 | 5_1:-31364148 | Msa0727930:CDS |
| GAAACTTGATTGCATGCATA+AGG | 0.448780 | 5_1:-31365872 | Msa0727930:intron |
| GGGGAGCTTCTAGGTGGTAC+TGG | 0.450026 | 5_1:-31365169 | Msa0727930:CDS |
| TTTCATCAGGAGCTTGGGCG+GGG | 0.450305 | 5_1:-31364135 | Msa0727930:CDS |
| ACAATTAGATCTAGAACAAA+TGG | 0.450830 | 5_1:-31365593 | Msa0727930:CDS |
| CTTCAGATTTCTGACTTGAT+GGG | 0.454247 | 5_1:+31362790 | None:intergenic |
| GACAAAATCAAGTGCAACCT+TGG | 0.456526 | 5_1:+31362129 | None:intergenic |
| GCCAAATTGCATTTCTGAGT+TGG | 0.462250 | 5_1:-31364936 | Msa0727930:CDS |
| CTGATGAAATGCACGCCAAA+TGG | 0.462938 | 5_1:+31364613 | None:intergenic |
| TAAGATAAAACGTCTGATCA+TGG | 0.467077 | 5_1:+31363009 | None:intergenic |
| AGAAGAAGAAGGAACCTAAT+GGG | 0.467931 | 5_1:-31365960 | Msa0727930:CDS |
| GCCACTAATGAAGGTGATCA+TGG | 0.468801 | 5_1:-31364986 | Msa0727930:CDS |
| AAATACAAACAAAAGCTTCA+AGG | 0.478511 | 5_1:-31366371 | Msa0727930:five_prime_UTR |
| AAGGTATTCCAGCATATACT+TGG | 0.480594 | 5_1:+31365630 | None:intergenic |
| TTTCTCAGATCAGCAGAAGA+AGG | 0.482830 | 5_1:+31366261 | None:intergenic |
| GCTGTAAAAGAGGAGGAAAA+TGG | 0.484521 | 5_1:-31365997 | Msa0727930:CDS |
| GCTTGATGTGGTAGAAAAGT+TGG | 0.489208 | 5_1:-31361412 | Msa0727930:CDS |
| TAGTTTAGATGGTGCTCTAT+GGG | 0.492846 | 5_1:-31363301 | Msa0727930:CDS |
| TCTAGAACAAATGGCTGAGA+TGG | 0.494128 | 5_1:-31365584 | Msa0727930:CDS |
| GTCGCAAGGATAAGCTTGAT+TGG | 0.494914 | 5_1:-31364347 | Msa0727930:CDS |
| ACTTGATGGGGACAACCAGC+TGG | 0.494968 | 5_1:+31362803 | None:intergenic |
| TTGTTTGAAGCCTGTTAAGA+AGG | 0.498085 | 5_1:-31364840 | Msa0727930:CDS |
| GATTTCATCAGGAGCTTGGG+CGG | 0.499730 | 5_1:-31364137 | Msa0727930:CDS |
| TGATTGCTTAAATTGGTGCC+AGG | 0.502959 | 5_1:-31364546 | Msa0727930:intron |
| AGCACAAGCGAGGTAAATGT+TGG | 0.503431 | 5_1:+31366418 | None:intergenic |
| AAATGAAAGTGGACGAGTCA+TGG | 0.504418 | 5_1:-31363376 | Msa0727930:CDS |
| TACGGATTTCCTCTGTCAAA+CGG | 0.506035 | 5_1:+31362080 | None:intergenic |
| CTATTGTTCTCCTTTAAAGC+AGG | 0.506371 | 5_1:-31363205 | Msa0727930:intron |
| TGTCCAAAAGCCACTAATGA+AGG | 0.506461 | 5_1:-31364995 | Msa0727930:CDS |
| GCTTCAAGGAAGAAGAAACT+TGG | 0.507466 | 5_1:-31366357 | Msa0727930:five_prime_UTR |
| AGCTATTGAAATTGAATGAT+CGG | 0.510634 | 5_1:-31364320 | Msa0727930:CDS |
| GTTGACTCATGTTGCTAAAG+TGG | 0.514296 | 5_1:-31363574 | Msa0727930:CDS |
| GCTCCCTCTTGTCTTGCTCA+AGG | 0.519343 | 5_1:+31363502 | None:intergenic |
| TGAAGCTTCCAAGTATATGC+TGG | 0.521299 | 5_1:-31365638 | Msa0727930:CDS |
| TAGTTCTGAAGCTGTAAAAG+AGG | 0.524173 | 5_1:-31366007 | Msa0727930:CDS |
| ATTGTCTTAAATATGGAAGA+AGG | 0.525989 | 5_1:+31365611 | None:intergenic |
| AATGCACGCCAAATGGCAAC+CGG | 0.526019 | 5_1:+31364620 | None:intergenic |
| AAGTTTGTCTGGTTTAAGCT+GGG | 0.528869 | 5_1:-31364645 | Msa0727930:CDS |
| TGTATATTCTTTATATGGCA+AGG | 0.530614 | 5_1:+31364242 | None:intergenic |
| TTATGTAGATCAATAGCCTT+AGG | 0.531000 | 5_1:+31364746 | None:intergenic |
| CGAGTCATGGAAAGTGAAAG+TGG | 0.531464 | 5_1:-31363363 | Msa0727930:CDS |
| AGAGGATGTACCTAAATTGA+AGG | 0.534405 | 5_1:-31363265 | Msa0727930:CDS |
| GGTAGTCAAATATCGAGGTC+TGG | 0.539728 | 5_1:+31365254 | None:intergenic |
| GAAAATGAATCTCATGCTGC+CGG | 0.540013 | 5_1:-31365082 | Msa0727930:CDS |
| GATCTGTAGGAATTGAGCCT+TGG | 0.543618 | 5_1:-31362862 | Msa0727930:intron |
| ATAAAACGTCTGATCATGGA+TGG | 0.544900 | 5_1:+31363013 | None:intergenic |
| AACTCAGAAATGCAATTTGG+CGG | 0.544926 | 5_1:+31364938 | None:intergenic |
| AGAAGAAAGAAAATCGAGGT+AGG | 0.546704 | 5_1:-31366125 | Msa0727930:CDS |
| GCACAATAGTGTTCGAGTCA+TGG | 0.549629 | 5_1:-31363400 | Msa0727930:CDS |
| CCGTTCAATTTACAGGTCTG+AGG | 0.550018 | 5_1:-31361239 | Msa0727930:CDS |
| GCACAAGCGAGGTAAATGTT+GGG | 0.550757 | 5_1:+31366419 | None:intergenic |
| ATGGAGAGACCAATGTCGAC+AGG | 0.551632 | 5_1:-31363461 | Msa0727930:CDS |
| TTCCAGAATCTCAGGCTGGC+CGG | 0.557837 | 5_1:+31365063 | None:intergenic |
| ACAAATGGCTGAGATGGAGA+TGG | 0.563502 | 5_1:-31365578 | Msa0727930:CDS |
| TGTAAATAAGAGTAAAGTGG+TGG | 0.568134 | 5_1:-31366160 | Msa0727930:CDS |
| CAATTCACTTTCGAATGTGA+AGG | 0.569546 | 5_1:-31364573 | Msa0727930:CDS |
| GCACCTTGAGCAAGACAAGA+GGG | 0.570458 | 5_1:-31363505 | Msa0727930:CDS |
| TTACTAACAATCATAAGAAG+AGG | 0.571805 | 5_1:-31362989 | Msa0727930:CDS |
| GTAACATTCGTCTCAGCTCA+AGG | 0.572483 | 5_1:+31364960 | None:intergenic |
| ACTGTTCCAGAATCTCAGGC+TGG | 0.574999 | 5_1:+31365059 | None:intergenic |
| GTTGCTATGAGCTTCGTCGT+GGG | 0.576036 | 5_1:-31365189 | Msa0727930:CDS |
| ATTATCAATCCTGTCGACAT+TGG | 0.577064 | 5_1:+31363452 | None:intergenic |
| CGAGTCATGGAAAATGAAAG+TGG | 0.577207 | 5_1:-31363387 | Msa0727930:CDS |
| AAGTGCATGATTTCTTTACT+GGG | 0.579389 | 5_1:-31364380 | Msa0727930:CDS |
| GATAATATACTGAATAACAC+AGG | 0.580018 | 5_1:-31364815 | Msa0727930:CDS |
| TTCAGATTTCTGACTTGATG+GGG | 0.580580 | 5_1:+31362791 | None:intergenic |
| AGGTTAAGATCACCTTTGAA+AGG | 0.581619 | 5_1:+31364216 | None:intergenic |
| GAATATACAGATCCTTTCAA+AGG | 0.581672 | 5_1:-31364228 | Msa0727930:CDS |
| TTCTGTAAATAAGAGTAAAG+TGG | 0.583105 | 5_1:-31366163 | Msa0727930:CDS |
| CCTCAGACCTGTAAATTGAA+CGG | 0.584565 | 5_1:+31361239 | None:intergenic |
| TTTCACAGAGGACAAATTGG+AGG | 0.591359 | 5_1:-31362038 | Msa0727930:intron |
| CAAGACAAGAGGGAGCTACA+TGG | 0.591607 | 5_1:-31363495 | Msa0727930:CDS |
| TTCTGAAGCTGTAAAAGAGG+AGG | 0.597856 | 5_1:-31366004 | Msa0727930:CDS |
| TAGAAAAGTTGGAGAATGCA+AGG | 0.598312 | 5_1:-31361401 | Msa0727930:CDS |
| TATCAAGCAGCTTCGCAGCA+AGG | 0.599785 | 5_1:+31364196 | None:intergenic |
| CGAGGGGAAGATTATCTGCA+TGG | 0.602428 | 5_1:-31365121 | Msa0727930:CDS |
| TTTGTCTCTCCCGAAAATGT+CGG | 0.604807 | 5_1:-31362112 | Msa0727930:CDS |
| TTGCTATGAGCTTCGTCGTG+GGG | 0.607792 | 5_1:-31365188 | Msa0727930:CDS |
| GATGGAAACTGAAACAGCGC+AGG | 0.608691 | 5_1:-31366211 | Msa0727930:CDS |
| AAGTGGATTATGTGAGAAGG+TGG | 0.610595 | 5_1:-31363346 | Msa0727930:CDS |
| TGTTGCTATGAGCTTCGTCG+TGG | 0.611387 | 5_1:-31365190 | Msa0727930:CDS |
| TCATTCAATTTCAATAGCTG+AGG | 0.611928 | 5_1:+31364324 | None:intergenic |
| AGCTTCTGAACAAAACTCCA+AGG | 0.613881 | 5_1:+31362845 | None:intergenic |
| CATGCAGATAATCTTCCCCT+CGG | 0.616515 | 5_1:+31365122 | None:intergenic |
| CCATCAAGTCAGAAATCTGA+AGG | 0.618399 | 5_1:-31362789 | Msa0727930:intron |
| AGCACCTTGAGCAAGACAAG+AGG | 0.618569 | 5_1:-31363506 | Msa0727930:CDS |
| AGGATATGAACTCGGTACAA+TGG | 0.619500 | 5_1:+31364265 | None:intergenic |
| GAGTTTGAGTTAATCAACCG+AGG | 0.619684 | 5_1:-31365139 | Msa0727930:CDS |
| GAGTAATGCAGAGAAGAAGG+AGG | 0.621102 | 5_1:-31366328 | Msa0727930:CDS |
| GAGATGGAAGCTAAAACTCA+AGG | 0.621465 | 5_1:-31365562 | Msa0727930:intron |
| AGTTTGAGTTAATCAACCGA+GGG | 0.622038 | 5_1:-31365138 | Msa0727930:CDS |
| ATTATTTGCTAGCACAAGCG+AGG | 0.623107 | 5_1:+31366408 | None:intergenic |
| TAAAACGTCTGATCATGGAT+GGG | 0.626621 | 5_1:+31363014 | None:intergenic |
| TGGGTACACAAATGGTCGCA+AGG | 0.631643 | 5_1:-31364361 | Msa0727930:CDS |
| TGGAACAGTCAAAATTTGGG+TGG | 0.632620 | 5_1:-31365045 | Msa0727930:CDS |
| TCATAAGAAGAGGCTTAAGG+AGG | 0.634907 | 5_1:-31362979 | Msa0727930:CDS |
| CTACATGGTGATAATCAGGA+TGG | 0.636072 | 5_1:-31363480 | Msa0727930:CDS |
| TGATCTACATAATCACGAGA+AGG | 0.638587 | 5_1:-31364735 | Msa0727930:CDS |
| GTGAAGAAGAAAGAAAATCG+AGG | 0.644136 | 5_1:-31366129 | Msa0727930:CDS |
| GTATCTGATAATAATAAAGG+AGG | 0.644368 | 5_1:-31365922 | Msa0727930:CDS |
| TAAAGTGGAACTGGAAACTG+TGG | 0.647185 | 5_1:-31363559 | Msa0727930:CDS |
| GATTGCATACTTAAGGCCCA+AGG | 0.648619 | 5_1:-31361373 | Msa0727930:intron |
| TATACTGAATAACACAGGGA+AGG | 0.649723 | 5_1:-31364810 | Msa0727930:CDS |
| GATACATTACAAAGGAACAT+CGG | 0.651806 | 5_1:+31361213 | None:intergenic |
| CATAGCAACAGCGAAGACAA+AGG | 0.659485 | 5_1:+31365203 | None:intergenic |
| TGAGTGCTTCCGTTTGACAG+AGG | 0.660380 | 5_1:-31362089 | Msa0727930:CDS |
| ATGAACTCGGTACAATGGCG+AGG | 0.661487 | 5_1:+31364270 | None:intergenic |
| CGTCGTGGGGAGCTTCTAGG+TGG | 0.662823 | 5_1:-31365175 | Msa0727930:CDS |
| ACTGAATAACACAGGGAAGG+CGG | 0.664052 | 5_1:-31364807 | Msa0727930:CDS |
| CGTTAATCTCGAAGATATCG+AGG | 0.667337 | 5_1:-31364885 | Msa0727930:CDS |
| GTAAAAGAGGAGGAAAATGG+TGG | 0.672369 | 5_1:-31365994 | Msa0727930:CDS |
| GGGTGGCATGTAGACAGTGA+TGG | 0.677937 | 5_1:-31365028 | Msa0727930:CDS |
| TGGCAAGGAGGATATGAACT+CGG | 0.679134 | 5_1:+31364257 | None:intergenic |
| CTCTCACAGATACATTACAA+AGG | 0.679764 | 5_1:+31361205 | None:intergenic |
| TCAATGGCACTGGAGAAAAG+GGG | 0.683003 | 5_1:-31364699 | Msa0727930:CDS |
| TGAAAGTGGATTATGTGAGA+AGG | 0.683438 | 5_1:-31363349 | Msa0727930:CDS |
| TATACATGCTATGCTTGATG+TGG | 0.693903 | 5_1:-31361424 | Msa0727930:CDS |
| GCTGCTTGATAATGTGCACG+TGG | 0.707595 | 5_1:-31364184 | Msa0727930:CDS |
| TCTGTGGTAGTCAAATATCG+AGG | 0.709923 | 5_1:+31365249 | None:intergenic |
| ATATTCTTTATATGGCAAGG+AGG | 0.725924 | 5_1:+31364245 | None:intergenic |
| AAAGTGGAACTGGAAACTGT+GGG | 0.730360 | 5_1:-31363558 | Msa0727930:CDS |
| ATAATATACTGAATAACACA+GGG | 0.733267 | 5_1:-31364814 | Msa0727930:CDS |
| AGTAAATCACTATTTCACAG+AGG | 0.750431 | 5_1:-31362050 | Msa0727930:CDS |
| GCTGATCTGAGAAAGAAACG+TGG | 0.761952 | 5_1:-31366252 | Msa0727930:CDS |
| CTGCTTGATAATGTGCACGT+GGG | 0.762881 | 5_1:-31364183 | Msa0727930:CDS |
| GTTTGAGTTAATCAACCGAG+GGG | 0.766582 | 5_1:-31365137 | Msa0727930:CDS |
| CTACATCAGACATATCACAG+TGG | 0.829336 | 5_1:+31364094 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTCTCAAATAAATA+AGG | + | chr5_1:31363370-31363389 | None:intergenic | 10.0% |
| !! | ATTATAACTAAGAAAAAACA+AGG | + | chr5_1:31362160-31362179 | None:intergenic | 15.0% |
| !! | AATTATCAAAGAAAAAAACA+CGG | + | chr5_1:31364048-31364067 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTCTTTGATAATT+TGG | - | chr5_1:31364048-31364067 | Msa0727930:intron | 15.0% |
| !!! | ATTTGTTTTATCTTTAATGA+AGG | - | chr5_1:31364916-31364935 | Msa0727930:CDS | 15.0% |
| !! | ATTTGTAAAAAATTGTATGT+AGG | + | chr5_1:31365392-31365411 | None:intergenic | 15.0% |
| !!! | TATTTTATTTTAGTTTCTCT+AGG | - | chr5_1:31366374-31366393 | Msa0727930:five_prime_UTR | 15.0% |
| !! | CTTGTATCTGATAATAATAA+AGG | - | chr5_1:31361736-31361755 | Msa0727930:intron | 20.0% |
| !!! | ATTCTACATTTGATTTGAAA+TGG | - | chr5_1:31361936-31361955 | Msa0727930:intron | 20.0% |
| !!! | TTCATCATTTTATTCACTAT+AGG | - | chr5_1:31361960-31361979 | Msa0727930:intron | 20.0% |
| !! | AGATCTAATTGTCTTAAATA+TGG | + | chr5_1:31362060-31362079 | None:intergenic | 20.0% |
| !! | ATAATATACTGAATAACACA+GGG | - | chr5_1:31362847-31362866 | Msa0727930:CDS | 20.0% |
| !!! | TTTTTCTCAAATAAATAAGG+AGG | + | chr5_1:31363367-31363386 | None:intergenic | 20.0% |
| !!! | TTATTTTGTGTAATTTACCT+TGG | - | chr5_1:31363794-31363813 | Msa0727930:intron | 20.0% |
| !! | GGAAAGACAATTTATTTATT+GGG | + | chr5_1:31363943-31363962 | None:intergenic | 20.0% |
| !! | CAATAAATAAATTGTCTTTC+CGG | - | chr5_1:31363942-31363961 | Msa0727930:intron | 20.0% |
| !!! | TATAATTTTTGTACACTGTT+TGG | - | chr5_1:31364723-31364742 | Msa0727930:CDS | 20.0% |
| !! | ATGTTGAATTGTTAACAAAA+TGG | + | chr5_1:31364778-31364797 | None:intergenic | 20.0% |
| !! | AATAGTTAGTTATATGATGT+TGG | + | chr5_1:31365002-31365021 | None:intergenic | 20.0% |
| !!! | TTTTATTCTCTACTTTAATG+TGG | - | chr5_1:31365717-31365736 | Msa0727930:intron | 20.0% |
| !! | GGTAAAATAAGTTTAATTCA+AGG | + | chr5_1:31365910-31365929 | None:intergenic | 20.0% |
| !! | TTACATTACAATTACAAAAG+TGG | + | chr5_1:31365968-31365987 | None:intergenic | 20.0% |
| !! | TCAATTACTGAAAATTTGAT+CGG | - | chr5_1:31365990-31366009 | Msa0727930:CDS | 20.0% |
| !!! | TTCTTTGAAAAGTCATTAAT+TGG | - | chr5_1:31366076-31366095 | Msa0727930:CDS | 20.0% |
| !! | ATTCTATATTCAATAACCTT+GGG | + | chr5_1:31366307-31366326 | None:intergenic | 20.0% |
| !! | TATTCTATATTCAATAACCT+TGG | + | chr5_1:31366308-31366327 | None:intergenic | 20.0% |
| ! | AAATACAAACAAAAGCTTCA+AGG | - | chr5_1:31361290-31361309 | Msa0727930:intron | 25.0% |
| ! | TTCTGTAAATAAGAGTAAAG+TGG | - | chr5_1:31361498-31361517 | Msa0727930:intron | 25.0% |
| !! | TTTTGTGATAAAGAAGAAGA+AGG | - | chr5_1:31361690-31361709 | Msa0727930:intron | 25.0% |
| ! | GTATCTGATAATAATAAAGG+AGG | - | chr5_1:31361739-31361758 | Msa0727930:intron | 25.0% |
| ! | ATTGTCTTAAATATGGAAGA+AGG | + | chr5_1:31362053-31362072 | None:intergenic | 25.0% |
| !! | ACAATTAGATCTAGAACAAA+TGG | - | chr5_1:31362068-31362087 | Msa0727930:CDS | 25.0% |
| ! | TGATCATTAGATGAAATACA+AGG | + | chr5_1:31362213-31362232 | None:intergenic | 25.0% |
| ! | TTTCATCTAATGATCATTAC+AGG | - | chr5_1:31362217-31362236 | Msa0727930:intron | 25.0% |
| ! | TTCATCTAATGATCATTACA+GGG | - | chr5_1:31362218-31362237 | Msa0727930:intron | 25.0% |
| !! | ACTTATACTTTACCATGTTT+TGG | - | chr5_1:31362312-31362331 | Msa0727930:intron | 25.0% |
| ! | TAACTAAGAAAACCAAAACA+TGG | + | chr5_1:31362327-31362346 | None:intergenic | 25.0% |
| ! | TTGATTAACTCAAACTCAAT+TGG | + | chr5_1:31362519-31362538 | None:intergenic | 25.0% |
| ! | ATATTATCTTCCTTCTTAAC+AGG | + | chr5_1:31362834-31362853 | None:intergenic | 25.0% |
| ! | GATAATATACTGAATAACAC+AGG | - | chr5_1:31362846-31362865 | Msa0727930:CDS | 25.0% |
| !! | ACAGTATAAAAAGTTTTCAC+TGG | + | chr5_1:31362895-31362914 | None:intergenic | 25.0% |
| !! | AAACTTTTTATACTGTCCTA+AGG | - | chr5_1:31362899-31362918 | Msa0727930:intron | 25.0% |
| !!! | AGGATTTAAGACATTTTCAA+TGG | - | chr5_1:31362946-31362965 | Msa0727930:intron | 25.0% |
| ! | AGCTATTGAAATTGAATGAT+CGG | - | chr5_1:31363341-31363360 | Msa0727930:CDS | 25.0% |
| ! | TGTATATTCTTTATATGGCA+AGG | + | chr5_1:31363422-31363441 | None:intergenic | 25.0% |
| ! | GGATCTGTATATTCTTTATA+TGG | + | chr5_1:31363427-31363446 | None:intergenic | 25.0% |
| !! | CCATAAGCAATATATGTTTT+TGG | + | chr5_1:31363505-31363524 | None:intergenic | 25.0% |
| ! | CCAAAAACATATATTGCTTA+TGG | - | chr5_1:31363502-31363521 | Msa0727930:CDS | 25.0% |
| ! | CGGAAAGACAATTTATTTAT+TGG | + | chr5_1:31363944-31363963 | None:intergenic | 25.0% |
| !!! | CTTTGATAATTTGGCTTTTT+AGG | - | chr5_1:31364057-31364076 | Msa0727930:intron | 25.0% |
| ! | CATCAAGAAAATAGTTTAGA+TGG | - | chr5_1:31364349-31364368 | Msa0727930:CDS | 25.0% |
| ! | TTCAGATATTCCTTCAATTT+AGG | + | chr5_1:31364409-31364428 | None:intergenic | 25.0% |
| ! | TTACTAACAATCATAAGAAG+AGG | - | chr5_1:31364672-31364691 | Msa0727930:CDS | 25.0% |
| ! | AACAAAATGGTACAATTGTA+TGG | + | chr5_1:31364765-31364784 | None:intergenic | 25.0% |
| ! | TTCTCTTTATTAACCATAGA+AGG | + | chr5_1:31364952-31364971 | None:intergenic | 25.0% |
| ! | ATACTTAAGGCAATATCATT+TGG | - | chr5_1:31365175-31365194 | Msa0727930:CDS | 25.0% |
| !!! | CAATTTTTTACAAATTACCC+TGG | - | chr5_1:31365397-31365416 | Msa0727930:CDS | 25.0% |
| !!! | TTCATAGAAGTTTTAGAATC+CGG | - | chr5_1:31365747-31365766 | Msa0727930:intron | 25.0% |
| !!! | TTTCAACCAATAAAAGTGTT+CGG | + | chr5_1:31365862-31365881 | None:intergenic | 25.0% |
| !!! | AACACTTTTATTGGTTGAAA+TGG | - | chr5_1:31365862-31365881 | Msa0727930:intron | 25.0% |
| ! | TCATGTCAATAGATTCTTAT+TGG | - | chr5_1:31366152-31366171 | Msa0727930:CDS | 25.0% |
| CAGAAAGAAAAAAGTGAAGA+TGG | - | chr5_1:31361432-31361451 | Msa0727930:CDS | 30.0% | |
| TGTAAATAAGAGTAAAGTGG+TGG | - | chr5_1:31361501-31361520 | Msa0727930:intron | 30.0% | |
| AGAAGAAAGAAAATCGTGTT+AGG | - | chr5_1:31361614-31361633 | Msa0727930:intron | 30.0% | |
| ! | AGCATTTTTCTTTTCCCATT+AGG | + | chr5_1:31361718-31361737 | None:intergenic | 30.0% |
| ATAAAGGAGGTTATGCTTTA+AGG | - | chr5_1:31361752-31361771 | Msa0727930:intron | 30.0% | |
| !! | ATTCTGGAACAGTCAAAATT+TGG | - | chr5_1:31362612-31362631 | Msa0727930:intron | 30.0% |
| !! | TTCTGGAACAGTCAAAATTT+GGG | - | chr5_1:31362613-31362632 | Msa0727930:intron | 30.0% |
| TTATGTAGATCAATAGCCTT+AGG | + | chr5_1:31362918-31362937 | None:intergenic | 30.0% | |
| ATTCGAAAGTGAATTGTCAT+TGG | + | chr5_1:31363084-31363103 | None:intergenic | 30.0% | |
| AGGCAATTGATTGCTTAAAT+TGG | - | chr5_1:31363108-31363127 | Msa0727930:intron | 30.0% | |
| TTAAGAAAATCGAACAAACC+TGG | + | chr5_1:31363136-31363155 | None:intergenic | 30.0% | |
| AAAGTGCATGATTTCTTTAC+TGG | - | chr5_1:31363280-31363299 | Msa0727930:CDS | 30.0% | |
| AAGTGCATGATTTCTTTACT+GGG | - | chr5_1:31363281-31363300 | Msa0727930:CDS | 30.0% | |
| TCATTCAATTTCAATAGCTG+AGG | + | chr5_1:31363340-31363359 | None:intergenic | 30.0% | |
| ATATTCTTTATATGGCAAGG+AGG | + | chr5_1:31363419-31363438 | None:intergenic | 30.0% | |
| GAATATACAGATCCTTTCAA+AGG | - | chr5_1:31363433-31363452 | Msa0727930:CDS | 30.0% | |
| TATTGCTTATGGATTTCATC+AGG | - | chr5_1:31363513-31363532 | Msa0727930:CDS | 30.0% | |
| TATTTGCGTAGCATATTGAA+AGG | - | chr5_1:31363668-31363687 | Msa0727930:intron | 30.0% | |
| !!! | TGTAATTTACCTTGGTGTTT+TGG | - | chr5_1:31363802-31363821 | Msa0727930:intron | 30.0% |
| TATCAATTACCAAAACACCA+AGG | + | chr5_1:31363814-31363833 | None:intergenic | 30.0% | |
| !! | GAATATCTGAAGAAGCATTT+CGG | - | chr5_1:31364418-31364437 | Msa0727930:intron | 30.0% |
| GAGAAAACAAGAGAAAATGA+AGG | + | chr5_1:31364530-31364549 | None:intergenic | 30.0% | |
| TGAATAACCTACATTACCAA+TGG | + | chr5_1:31364626-31364645 | None:intergenic | 30.0% | |
| TAAGATAAAACGTCTGATCA+TGG | + | chr5_1:31364655-31364674 | None:intergenic | 30.0% | |
| ACAATTCAACATTGATCTGT+AGG | - | chr5_1:31364786-31364805 | Msa0727930:CDS | 30.0% | |
| GAAGGTAAAACTTATGTACA+TGG | - | chr5_1:31364890-31364909 | Msa0727930:CDS | 30.0% | |
| GAAGTGTAAAACTATTACGA+CGG | + | chr5_1:31365039-31365058 | None:intergenic | 30.0% | |
| GGAATGATCAAATGGAAATA+TGG | + | chr5_1:31365061-31365080 | None:intergenic | 30.0% | |
| CCTTACTCAAATACACAAAA+CGG | - | chr5_1:31365137-31365156 | Msa0727930:CDS | 30.0% | |
| !! | TATTGCCTTAAGTATTGATG+TGG | + | chr5_1:31365170-31365189 | None:intergenic | 30.0% |
| ! | TGATATCTTGGTACTTTTGT+TGG | - | chr5_1:31365260-31365279 | Msa0727930:CDS | 30.0% |
| AGTATTCAAAAAGAACTGAC+AGG | + | chr5_1:31365330-31365349 | None:intergenic | 30.0% | |
| AGTGATTTACTGGAAGTTTA+CGG | + | chr5_1:31365602-31365621 | None:intergenic | 30.0% | |
| TCTGTGAAATAGTGATTTAC+TGG | + | chr5_1:31365612-31365631 | None:intergenic | 30.0% | |
| AGTAAATCACTATTTCACAG+AGG | - | chr5_1:31365611-31365630 | Msa0727930:CDS | 30.0% | |
| TCAAATCCATAAAAGTAGTC+TGG | + | chr5_1:31365653-31365672 | None:intergenic | 30.0% | |
| !!! | TCATAGAAGTTTTAGAATCC+GGG | - | chr5_1:31365748-31365767 | Msa0727930:intron | 30.0% |
| TACTGAAAATTTGATCGGAA+TGG | - | chr5_1:31365995-31366014 | Msa0727930:CDS | 30.0% | |
| ACTGAAAATTTGATCGGAAT+GGG | - | chr5_1:31365996-31366015 | Msa0727930:CDS | 30.0% | |
| AATCTATTGACATGACATGA+TGG | + | chr5_1:31366147-31366166 | None:intergenic | 30.0% | |
| !!! | TTTTCTGATTGCTGCTTTTT+TGG | - | chr5_1:31366190-31366209 | Msa0727930:CDS | 30.0% |
| ! | TAATCATTTTCTTCACCTGT+TGG | + | chr5_1:31366219-31366238 | None:intergenic | 30.0% |
| AATTGAACGGTAAGCAAAAT+CGG | + | chr5_1:31366412-31366431 | None:intergenic | 30.0% | |
| AATGAGTAATGCAGAGAAGA+AGG | - | chr5_1:31361330-31361349 | Msa0727930:intron | 35.0% | |
| ! | TAAGAGTAAAGTGGTGGAAA+AGG | - | chr5_1:31361507-31361526 | Msa0727930:intron | 35.0% |
| GTGAAGAAGAAAGAAAATCG+AGG | - | chr5_1:31361532-31361551 | Msa0727930:intron | 35.0% | |
| AGAAGAAAGAAAATCGAGGT+AGG | - | chr5_1:31361536-31361555 | Msa0727930:intron | 35.0% | |
| AAGAAAATCGAGGTAGGAAA+AGG | - | chr5_1:31361542-31361561 | Msa0727930:intron | 35.0% | |
| CTTCTTCTTCTTCTTCTCTT+TGG | + | chr5_1:31361599-31361618 | None:intergenic | 35.0% | |
| !! | TAGTTCTGAAGCTGTAAAAG+AGG | - | chr5_1:31361654-31361673 | Msa0727930:intron | 35.0% |
| AAGAAGAAGAAGGAACCTAA+TGG | - | chr5_1:31361700-31361719 | Msa0727930:intron | 35.0% | |
| AGAAGAAGAAGGAACCTAAT+GGG | - | chr5_1:31361701-31361720 | Msa0727930:intron | 35.0% | |
| GAAACTTGATTGCATGCATA+AGG | - | chr5_1:31361789-31361808 | Msa0727930:intron | 35.0% | |
| ! | AAGGTATTCCAGCATATACT+TGG | + | chr5_1:31362034-31362053 | None:intergenic | 35.0% |
| ! | AGTTTGAGTTAATCAACCGA+GGG | - | chr5_1:31362523-31362542 | Msa0727930:intron | 35.0% |
| AACTCAGAAATGCAATTTGG+CGG | + | chr5_1:31362726-31362745 | None:intergenic | 35.0% | |
| ACCAACTCAGAAATGCAATT+TGG | + | chr5_1:31362729-31362748 | None:intergenic | 35.0% | |
| CTCGATATCTTCGAGATTAA+CGG | + | chr5_1:31362778-31362797 | None:intergenic | 35.0% | |
| ! | TTGTTTGAAGCCTGTTAAGA+AGG | - | chr5_1:31362821-31362840 | Msa0727930:CDS | 35.0% |
| TATACTGAATAACACAGGGA+AGG | - | chr5_1:31362851-31362870 | Msa0727930:CDS | 35.0% | |
| TGATCTACATAATCACGAGA+AGG | - | chr5_1:31362926-31362945 | Msa0727930:intron | 35.0% | |
| ! | TAAGACATTTTCAATGGCAC+TGG | - | chr5_1:31362952-31362971 | Msa0727930:intron | 35.0% |
| AGAACGTTGTTGACAATTAC+AGG | + | chr5_1:31362990-31363009 | None:intergenic | 35.0% | |
| GTTCTTGAATCAAGTTTGTC+TGG | - | chr5_1:31363005-31363024 | Msa0727930:CDS | 35.0% | |
| ! | AAGTTTGTCTGGTTTAAGCT+GGG | - | chr5_1:31363016-31363035 | Msa0727930:CDS | 35.0% |
| CAATTCACTTTCGAATGTGA+AGG | - | chr5_1:31363088-31363107 | Msa0727930:intron | 35.0% | |
| CAGAAATTATCAGCAACAGA+TGG | + | chr5_1:31363220-31363239 | None:intergenic | 35.0% | |
| !! | TTGACTTGTTGATTCAATGC+AGG | - | chr5_1:31363249-31363268 | Msa0727930:CDS | 35.0% |
| !! | TGACTTGTTGATTCAATGCA+GGG | - | chr5_1:31363250-31363269 | Msa0727930:CDS | 35.0% |
| TTCTTTACTGGGTACACAAA+TGG | - | chr5_1:31363292-31363311 | Msa0727930:CDS | 35.0% | |
| AGGTTAAGATCACCTTTGAA+AGG | + | chr5_1:31363448-31363467 | None:intergenic | 35.0% | |
| TGTTTCAATTCTGTCTTTCC+TGG | - | chr5_1:31363592-31363611 | Msa0727930:intron | 35.0% | |
| ! | CATTCTAGAAAATACAGTCC+AGG | + | chr5_1:31363613-31363632 | None:intergenic | 35.0% |
| ! | TTGAAAGGTGCATAGTTTGA+AGG | - | chr5_1:31363683-31363702 | Msa0727930:intron | 35.0% |
| TAAGTGCATACTCTATCAAG+TGG | - | chr5_1:31364008-31364027 | Msa0727930:intron | 35.0% | |
| ATTATCAATCCTGTCGACAT+TGG | + | chr5_1:31364212-31364231 | None:intergenic | 35.0% | |
| !! | TGAAAGTGGATTATGTGAGA+AGG | - | chr5_1:31364312-31364331 | Msa0727930:CDS | 35.0% |
| ATAGTTTAGATGGTGCTCTA+TGG | - | chr5_1:31364359-31364378 | Msa0727930:CDS | 35.0% | |
| TAGTTTAGATGGTGCTCTAT+GGG | - | chr5_1:31364360-31364379 | Msa0727930:CDS | 35.0% | |
| ! | GTGCTCTATGGGATATTTTT+CGG | - | chr5_1:31364371-31364390 | Msa0727930:CDS | 35.0% |
| AGAGGATGTACCTAAATTGA+AGG | - | chr5_1:31364396-31364415 | Msa0727930:intron | 35.0% | |
| !! | CTATTGTTCTCCTTTAAAGC+AGG | - | chr5_1:31364456-31364475 | Msa0727930:intron | 35.0% |
| TCTGACTTTACCTGCTTTAA+AGG | + | chr5_1:31364469-31364488 | None:intergenic | 35.0% | |
| AGCTAGTGATAACTAAAACC+TGG | - | chr5_1:31364550-31364569 | Msa0727930:CDS | 35.0% | |
| AGTGATAACTAAAACCTGGT+AGG | - | chr5_1:31364554-31364573 | Msa0727930:CDS | 35.0% | |
| ACATAATTAGTGAACCTACC+AGG | + | chr5_1:31364571-31364590 | None:intergenic | 35.0% | |
| TAAAACGTCTGATCATGGAT+GGG | + | chr5_1:31364650-31364669 | None:intergenic | 35.0% | |
| ATAAAACGTCTGATCATGGA+TGG | + | chr5_1:31364651-31364670 | None:intergenic | 35.0% | |
| CAATCATAAGAAGAGGCTTA+AGG | - | chr5_1:31364679-31364698 | Msa0727930:CDS | 35.0% | |
| !! | TTTGTACACTGTTTGGTTTG+TGG | - | chr5_1:31364730-31364749 | Msa0727930:CDS | 35.0% |
| ! | TTCAGATTTCTGACTTGATG+GGG | + | chr5_1:31364873-31364892 | None:intergenic | 35.0% |
| ! | CTTCAGATTTCTGACTTGAT+GGG | + | chr5_1:31364874-31364893 | None:intergenic | 35.0% |
| GGTAAAACTTATGTACATGG+TGG | - | chr5_1:31364893-31364912 | Msa0727930:CDS | 35.0% | |
| ! | AGGTGTAAGTTTTCCTTCTA+TGG | - | chr5_1:31364936-31364955 | Msa0727930:CDS | 35.0% |
| ! | CCGTTTTGTGTATTTGAGTA+AGG | + | chr5_1:31365140-31365159 | None:intergenic | 35.0% |
| ! | CTTGAGAATTGGTAACTCAA+TGG | - | chr5_1:31365222-31365241 | Msa0727930:CDS | 35.0% |
| ! | ATTGGTAACTCAATGGAGAT+AGG | - | chr5_1:31365229-31365248 | Msa0727930:CDS | 35.0% |
| TAACTCAATGGAGATAGGAT+AGG | - | chr5_1:31365234-31365253 | Msa0727930:CDS | 35.0% | |
| ! | TAGGATAGGTTCTGATATCT+TGG | - | chr5_1:31365248-31365267 | Msa0727930:CDS | 35.0% |
| ACATAAAAGTGATGAGCTAG+TGG | + | chr5_1:31365430-31365449 | None:intergenic | 35.0% | |
| CTATTTCACAGAGGACAAAT+TGG | - | chr5_1:31365620-31365639 | Msa0727930:CDS | 35.0% | |
| !! | CCAATAAAAGTGTTCGGATT+TGG | + | chr5_1:31365856-31365875 | None:intergenic | 35.0% |
| ! | CCAAATCCGAACACTTTTAT+TGG | - | chr5_1:31365853-31365872 | Msa0727930:intron | 35.0% |
| TATACATGCTATGCTTGATG+TGG | - | chr5_1:31366237-31366256 | Msa0727930:CDS | 35.0% | |
| TAGAAAAGTTGGAGAATGCA+AGG | - | chr5_1:31366260-31366279 | Msa0727930:CDS | 35.0% | |
| GGTTAGTGATTGCATACTTA+AGG | - | chr5_1:31366281-31366300 | Msa0727930:CDS | 35.0% | |
| ATATACCATGTTCACTTTGC+TGG | - | chr5_1:31366325-31366344 | Msa0727930:CDS | 35.0% | |
| TTGCTTACCGTTCAATTTAC+AGG | - | chr5_1:31366415-31366434 | Msa0727930:five_prime_UTR | 35.0% | |
| ! | ATTATTTGCTAGCACAAGCG+AGG | + | chr5_1:31361256-31361275 | None:intergenic | 40.0% |
| GCTTCAAGGAAGAAGAAACT+TGG | - | chr5_1:31361304-31361323 | Msa0727930:intron | 40.0% | |
| TTTCTCAGATCAGCAGAAGA+AGG | + | chr5_1:31361403-31361422 | None:intergenic | 40.0% | |
| !! | TTCTGAAGCTGTAAAAGAGG+AGG | - | chr5_1:31361657-31361676 | Msa0727930:intron | 40.0% |
| GCTGTAAAAGAGGAGGAAAA+TGG | - | chr5_1:31361664-31361683 | Msa0727930:intron | 40.0% | |
| GTAAAAGAGGAGGAAAATGG+TGG | - | chr5_1:31361667-31361686 | Msa0727930:intron | 40.0% | |
| !!! | GATGCATGTGCTTTGTTTTG+TGG | - | chr5_1:31361873-31361892 | Msa0727930:intron | 40.0% |
| TGAAGCTTCCAAGTATATGC+TGG | - | chr5_1:31362023-31362042 | Msa0727930:intron | 40.0% | |
| ! | TCTAGAACAAATGGCTGAGA+TGG | - | chr5_1:31362077-31362096 | Msa0727930:CDS | 40.0% |
| GAGATGGAAGCTAAAACTCA+AGG | - | chr5_1:31362099-31362118 | Msa0727930:CDS | 40.0% | |
| GCAAGAAAAGAGACTCTTGA+AGG | + | chr5_1:31362134-31362153 | None:intergenic | 40.0% | |
| CTAAAGATGAGTGTGCTTAC+TGG | - | chr5_1:31362284-31362303 | Msa0727930:intron | 40.0% | |
| TCTGTGGTAGTCAAATATCG+AGG | + | chr5_1:31362415-31362434 | None:intergenic | 40.0% | |
| ! | AGCATTTTGCACAACTTCTG+TGG | + | chr5_1:31362431-31362450 | None:intergenic | 40.0% |
| ! | GAGTTTGAGTTAATCAACCG+AGG | - | chr5_1:31362522-31362541 | Msa0727930:intron | 40.0% |
| ! | GTTTGAGTTAATCAACCGAG+GGG | - | chr5_1:31362524-31362543 | Msa0727930:intron | 40.0% |
| GAAAATGAATCTCATGCTGC+CGG | - | chr5_1:31362579-31362598 | Msa0727930:intron | 40.0% | |
| TTTGACTGTTCCAGAATCTC+AGG | + | chr5_1:31362609-31362628 | None:intergenic | 40.0% | |
| TGGAACAGTCAAAATTTGGG+TGG | - | chr5_1:31362616-31362635 | Msa0727930:intron | 40.0% | |
| TGTCCAAAAGCCACTAATGA+AGG | - | chr5_1:31362666-31362685 | Msa0727930:intron | 40.0% | |
| ! | TCACCTTCATTAGTGGCTTT+TGG | + | chr5_1:31362672-31362691 | None:intergenic | 40.0% |
| ACCATGATCACCTTCATTAG+TGG | + | chr5_1:31362679-31362698 | None:intergenic | 40.0% | |
| GCCAAATTGCATTTCTGAGT+TGG | - | chr5_1:31362725-31362744 | Msa0727930:intron | 40.0% | |
| CGTTAATCTCGAAGATATCG+AGG | - | chr5_1:31362776-31362795 | Msa0727930:intron | 40.0% | |
| ! | TTTCAATGGCACTGGAGAAA+AGG | - | chr5_1:31362960-31362979 | Msa0727930:intron | 40.0% |
| ! | TTCAATGGCACTGGAGAAAA+GGG | - | chr5_1:31362961-31362980 | Msa0727930:intron | 40.0% |
| ! | CAAGTTTGTCTGGTTTAAGC+TGG | - | chr5_1:31363015-31363034 | Msa0727930:CDS | 40.0% |
| ! | TGATTGCTTAAATTGGTGCC+AGG | - | chr5_1:31363115-31363134 | Msa0727930:intron | 40.0% |
| AGACTAAGCAGTCATTTGAG+TGG | + | chr5_1:31363166-31363185 | None:intergenic | 40.0% | |
| AGGATATGAACTCGGTACAA+TGG | + | chr5_1:31363399-31363418 | None:intergenic | 40.0% | |
| TATGGATTTCATCAGGAGCT+TGG | - | chr5_1:31363520-31363539 | Msa0727930:CDS | 40.0% | |
| ATGGATTTCATCAGGAGCTT+GGG | - | chr5_1:31363521-31363540 | Msa0727930:CDS | 40.0% | |
| CTACATCAGACATATCACAG+TGG | + | chr5_1:31363570-31363589 | None:intergenic | 40.0% | |
| GCACAGACAAAGAACTAATC+CGG | + | chr5_1:31363964-31363983 | None:intergenic | 40.0% | |
| ! | GTTGACTCATGTTGCTAAAG+TGG | - | chr5_1:31364087-31364106 | Msa0727930:intron | 40.0% |
| TCATGTTGCTAAAGTGGAAC+TGG | - | chr5_1:31364093-31364112 | Msa0727930:intron | 40.0% | |
| TAAAGTGGAACTGGAAACTG+TGG | - | chr5_1:31364102-31364121 | Msa0727930:CDS | 40.0% | |
| AAAGTGGAACTGGAAACTGT+GGG | - | chr5_1:31364103-31364122 | Msa0727930:CDS | 40.0% | |
| CTACATGGTGATAATCAGGA+TGG | - | chr5_1:31364181-31364200 | Msa0727930:CDS | 40.0% | |
| ! | GTGCTCATCTGAAGCAATTA+CGG | + | chr5_1:31364245-31364264 | None:intergenic | 40.0% |
| CGAGTCATGGAAAATGAAAG+TGG | - | chr5_1:31364274-31364293 | Msa0727930:CDS | 40.0% | |
| AAATGAAAGTGGACGAGTCA+TGG | - | chr5_1:31364285-31364304 | Msa0727930:CDS | 40.0% | |
| !! | AAGTGGATTATGTGAGAAGG+TGG | - | chr5_1:31364315-31364334 | Msa0727930:CDS | 40.0% |
| !! | ATGGGATATTTTTCGGAGAG+AGG | - | chr5_1:31364378-31364397 | Msa0727930:CDS | 40.0% |
| GAGTTGAATGACGTATCCAT+TGG | - | chr5_1:31364607-31364626 | Msa0727930:CDS | 40.0% | |
| !! | GACGTATCCATTGGTAATGT+AGG | - | chr5_1:31364616-31364635 | Msa0727930:CDS | 40.0% |
| TCATAAGAAGAGGCTTAAGG+AGG | - | chr5_1:31364682-31364701 | Msa0727930:CDS | 40.0% | |
| AGCTTCTGAACAAAACTCCA+AGG | + | chr5_1:31364819-31364838 | None:intergenic | 40.0% | |
| !!! | TGGAGTTTTGTTCAGAAGCT+AGG | - | chr5_1:31364819-31364838 | Msa0727930:CDS | 40.0% |
| ! | CCTTCAGATTTCTGACTTGA+TGG | + | chr5_1:31364875-31364894 | None:intergenic | 40.0% |
| CCATCAAGTCAGAAATCTGA+AGG | - | chr5_1:31364872-31364891 | Msa0727930:CDS | 40.0% | |
| CTCACATGGGAATGATCAAA+TGG | + | chr5_1:31365069-31365088 | None:intergenic | 40.0% | |
| TTGATCATTCCCATGTGAGA+CGG | - | chr5_1:31365070-31365089 | Msa0727930:CDS | 40.0% | |
| TCATTTGGACATCTAGATCG+CGG | - | chr5_1:31365190-31365209 | Msa0727930:CDS | 40.0% | |
| ATGATCCATTCGACTGAGTT+AGG | + | chr5_1:31365287-31365306 | None:intergenic | 40.0% | |
| GACAAAATCAAGTGCAACCT+TGG | + | chr5_1:31365535-31365554 | None:intergenic | 40.0% | |
| TTTGTCTCTCCCGAAAATGT+CGG | - | chr5_1:31365549-31365568 | Msa0727930:intron | 40.0% | |
| TACGGATTTCCTCTGTCAAA+CGG | + | chr5_1:31365584-31365603 | None:intergenic | 40.0% | |
| TTTCACAGAGGACAAATTGG+AGG | - | chr5_1:31365623-31365642 | Msa0727930:CDS | 40.0% | |
| !! | GGTATGCCAGACTACTTTTA+TGG | - | chr5_1:31365644-31365663 | Msa0727930:CDS | 40.0% |
| CTTGACCAGCCAAAACAATT+GGG | - | chr5_1:31365771-31365790 | Msa0727930:intron | 40.0% | |
| TATACTGACAGCTTCCAATC+AGG | + | chr5_1:31365797-31365816 | None:intergenic | 40.0% | |
| CAGTATACTACACCTATCGT+TGG | - | chr5_1:31365810-31365829 | Msa0727930:intron | 40.0% | |
| TGCAGAGTCAAGGATTTAGA+TGG | + | chr5_1:31365931-31365950 | None:intergenic | 40.0% | |
| TCTAAATCCTTGACTCTGCA+AGG | - | chr5_1:31365931-31365950 | Msa0727930:CDS | 40.0% | |
| !!! | CTGCTTTTTTGGTAACCAAC+AGG | - | chr5_1:31366201-31366220 | Msa0727930:CDS | 40.0% |
| GCTTGATGTGGTAGAAAAGT+TGG | - | chr5_1:31366249-31366268 | Msa0727930:CDS | 40.0% | |
| TTTGACCAGCAAAGTGAACA+TGG | + | chr5_1:31366333-31366352 | None:intergenic | 40.0% | |
| CCTCAGACCTGTAAATTGAA+CGG | + | chr5_1:31366425-31366444 | None:intergenic | 40.0% | |
| GCACAAGCGAGGTAAATGTT+GGG | + | chr5_1:31361245-31361264 | None:intergenic | 45.0% | |
| AGCACAAGCGAGGTAAATGT+TGG | + | chr5_1:31361246-31361265 | None:intergenic | 45.0% | |
| GAGTAATGCAGAGAAGAAGG+AGG | - | chr5_1:31361333-31361352 | Msa0727930:intron | 45.0% | |
| CAGAGAAGAAGGAGGCTTTA+AGG | - | chr5_1:31361341-31361360 | Msa0727930:intron | 45.0% | |
| GCTGATCTGAGAAAGAAACG+TGG | - | chr5_1:31361409-31361428 | Msa0727930:CDS | 45.0% | |
| ACAAATGGCTGAGATGGAGA+TGG | - | chr5_1:31362083-31362102 | Msa0727930:CDS | 45.0% | |
| GGTAGTCAAATATCGAGGTC+TGG | + | chr5_1:31362410-31362429 | None:intergenic | 45.0% | |
| CATAGCAACAGCGAAGACAA+AGG | + | chr5_1:31362461-31362480 | None:intergenic | 45.0% | |
| CATGCAGATAATCTTCCCCT+CGG | + | chr5_1:31362542-31362561 | None:intergenic | 45.0% | |
| GCCACTAATGAAGGTGATCA+TGG | - | chr5_1:31362675-31362694 | Msa0727930:intron | 45.0% | |
| GTAACATTCGTCTCAGCTCA+AGG | + | chr5_1:31362704-31362723 | None:intergenic | 45.0% | |
| ACTGAATAACACAGGGAAGG+CGG | - | chr5_1:31362854-31362873 | Msa0727930:CDS | 45.0% | |
| ! | TCAATGGCACTGGAGAAAAG+GGG | - | chr5_1:31362962-31362981 | Msa0727930:intron | 45.0% |
| CTGATGAAATGCACGCCAAA+TGG | + | chr5_1:31363051-31363070 | None:intergenic | 45.0% | |
| GTCGCAAGGATAAGCTTGAT+TGG | - | chr5_1:31363314-31363333 | Msa0727930:CDS | 45.0% | |
| TGGCAAGGAGGATATGAACT+CGG | + | chr5_1:31363407-31363426 | None:intergenic | 45.0% | |
| !! | CTGCTTGATAATGTGCACGT+GGG | - | chr5_1:31363478-31363497 | Msa0727930:CDS | 45.0% |
| GGAGCTACATGGTGATAATC+AGG | - | chr5_1:31364177-31364196 | Msa0727930:CDS | 45.0% | |
| GCACAATAGTGTTCGAGTCA+TGG | - | chr5_1:31364261-31364280 | Msa0727930:CDS | 45.0% | |
| CGAGTCATGGAAAGTGAAAG+TGG | - | chr5_1:31364298-31364317 | Msa0727930:CDS | 45.0% | |
| !! | AGAAGCATTTCGGAGAGTTC+AGG | - | chr5_1:31364428-31364447 | Msa0727930:intron | 45.0% |
| AAGAGGCTTAAGGAGGAGTA+TGG | - | chr5_1:31364689-31364708 | Msa0727930:CDS | 45.0% | |
| GATCTGTAGGAATTGAGCCT+TGG | - | chr5_1:31364799-31364818 | Msa0727930:CDS | 45.0% | |
| !!! | GATGCTGTTTTCATTCCAGC+TGG | - | chr5_1:31364843-31364862 | Msa0727930:CDS | 45.0% |
| ! | TTTTCCCAACCGTCTCACAT+GGG | + | chr5_1:31365082-31365101 | None:intergenic | 45.0% |
| ATGTGAGACGGTTGGGAAAA+GGG | - | chr5_1:31365082-31365101 | Msa0727930:CDS | 45.0% | |
| TTGGGAAAAGGGATTCTCGT+GGG | - | chr5_1:31365093-31365112 | Msa0727930:CDS | 45.0% | |
| GCCTGCCACATCAATACTTA+AGG | - | chr5_1:31365162-31365181 | Msa0727930:CDS | 45.0% | |
| !! | GCCTTAAGTATTGATGTGGC+AGG | + | chr5_1:31365166-31365185 | None:intergenic | 45.0% |
| TTGGTCCTAACTCAGTCGAA+TGG | - | chr5_1:31365279-31365298 | Msa0727930:intron | 45.0% | |
| GAGCTAGTGGTAAATAGCCA+GGG | + | chr5_1:31365417-31365436 | None:intergenic | 45.0% | |
| TGAGCTAGTGGTAAATAGCC+AGG | + | chr5_1:31365418-31365437 | None:intergenic | 45.0% | |
| ! | TGTTTTGCAGTCATGCACCA+AGG | - | chr5_1:31365515-31365534 | Msa0727930:intron | 45.0% |
| ! | AAGCACTCACCGACATTTTC+GGG | + | chr5_1:31365561-31365580 | None:intergenic | 45.0% |
| !! | GAAGCACTCACCGACATTTT+CGG | + | chr5_1:31365562-31365581 | None:intergenic | 45.0% |
| GCTTGACCAGCCAAAACAAT+TGG | - | chr5_1:31365770-31365789 | Msa0727930:intron | 45.0% | |
| ! | CCAATCAGGCCCAATTGTTT+TGG | + | chr5_1:31365783-31365802 | None:intergenic | 45.0% |
| CCAAAACAATTGGGCCTGAT+TGG | - | chr5_1:31365780-31365799 | Msa0727930:intron | 45.0% | |
| AATAGCACCTTGCAGAGTCA+AGG | + | chr5_1:31365941-31365960 | None:intergenic | 45.0% | |
| !! | TGACTCTGCAAGGTGCTATT+TGG | - | chr5_1:31365941-31365960 | Msa0727930:CDS | 45.0% |
| GATTGCATACTTAAGGCCCA+AGG | - | chr5_1:31366288-31366307 | Msa0727930:CDS | 45.0% | |
| CCGTTCAATTTACAGGTCTG+AGG | - | chr5_1:31366422-31366441 | Msa0727930:five_prime_UTR | 45.0% | |
| GATGGAAACTGAAACAGCGC+AGG | - | chr5_1:31361450-31361469 | Msa0727930:intron | 50.0% | |
| GATGAGTGTGCTTACTGGTC+AGG | - | chr5_1:31362289-31362308 | Msa0727930:intron | 50.0% | |
| TGTTGCTATGAGCTTCGTCG+TGG | - | chr5_1:31362471-31362490 | Msa0727930:intron | 50.0% | |
| GTTGCTATGAGCTTCGTCGT+GGG | - | chr5_1:31362472-31362491 | Msa0727930:intron | 50.0% | |
| TTGCTATGAGCTTCGTCGTG+GGG | - | chr5_1:31362473-31362492 | Msa0727930:intron | 50.0% | |
| CGAGGGGAAGATTATCTGCA+TGG | - | chr5_1:31362540-31362559 | Msa0727930:intron | 50.0% | |
| ACTGTTCCAGAATCTCAGGC+TGG | + | chr5_1:31362605-31362624 | None:intergenic | 50.0% | |
| ! | GTCTGGTTTAAGCTGGGAAC+CGG | - | chr5_1:31363022-31363041 | Msa0727930:CDS | 50.0% |
| AATGCACGCCAAATGGCAAC+CGG | + | chr5_1:31363044-31363063 | None:intergenic | 50.0% | |
| AGCAGTCATTTGAGTGGCTC+AGG | + | chr5_1:31363160-31363179 | None:intergenic | 50.0% | |
| TGGGTACACAAATGGTCGCA+AGG | - | chr5_1:31363300-31363319 | Msa0727930:CDS | 50.0% | |
| ATGAACTCGGTACAATGGCG+AGG | + | chr5_1:31363394-31363413 | None:intergenic | 50.0% | |
| TATCAAGCAGCTTCGCAGCA+AGG | + | chr5_1:31363468-31363487 | None:intergenic | 50.0% | |
| !! | GCTGCTTGATAATGTGCACG+TGG | - | chr5_1:31363477-31363496 | Msa0727930:CDS | 50.0% |
| GATTTCATCAGGAGCTTGGG+CGG | - | chr5_1:31363524-31363543 | Msa0727930:CDS | 50.0% | |
| ATTTCATCAGGAGCTTGGGC+GGG | - | chr5_1:31363525-31363544 | Msa0727930:CDS | 50.0% | |
| AGCACCTTGAGCAAGACAAG+AGG | - | chr5_1:31364155-31364174 | Msa0727930:CDS | 50.0% | |
| GCACCTTGAGCAAGACAAGA+GGG | - | chr5_1:31364156-31364175 | Msa0727930:CDS | 50.0% | |
| CAAGACAAGAGGGAGCTACA+TGG | - | chr5_1:31364166-31364185 | Msa0727930:CDS | 50.0% | |
| ATGGAGAGACCAATGTCGAC+AGG | - | chr5_1:31364200-31364219 | Msa0727930:CDS | 50.0% | |
| TCATTCCCATGTGAGACGGT+TGG | - | chr5_1:31365074-31365093 | Msa0727930:CDS | 50.0% | |
| CATTCCCATGTGAGACGGTT+GGG | - | chr5_1:31365075-31365094 | Msa0727930:CDS | 50.0% | |
| ! | CTTTTCCCAACCGTCTCACA+TGG | + | chr5_1:31365083-31365102 | None:intergenic | 50.0% |
| CATGTGAGACGGTTGGGAAA+AGG | - | chr5_1:31365081-31365100 | Msa0727930:CDS | 50.0% | |
| GTTGGGAAAAGGGATTCTCG+TGG | - | chr5_1:31365092-31365111 | Msa0727930:CDS | 50.0% | |
| TGGGAAAAGGGATTCTCGTG+GGG | - | chr5_1:31365094-31365113 | Msa0727930:CDS | 50.0% | |
| TGAGTGCTTCCGTTTGACAG+AGG | - | chr5_1:31365572-31365591 | Msa0727930:CDS | 50.0% | |
| !!! | TTGTTTTGGCTGGTCAAGCC+CGG | + | chr5_1:31365769-31365788 | None:intergenic | 50.0% |
| !!! | TCAGGCCCAATTGTTTTGGC+TGG | + | chr5_1:31365779-31365798 | None:intergenic | 50.0% |
| !! | AGCATGAGAGTGCCAACGAT+AGG | + | chr5_1:31365825-31365844 | None:intergenic | 50.0% |
| TTCCAGAATCTCAGGCTGGC+CGG | + | chr5_1:31362601-31362620 | None:intergenic | 55.0% | |
| GGGTGGCATGTAGACAGTGA+TGG | - | chr5_1:31362633-31362652 | Msa0727930:intron | 55.0% | |
| TTTCATCAGGAGCTTGGGCG+GGG | - | chr5_1:31363526-31363545 | Msa0727930:CDS | 55.0% | |
| GCTCCCTCTTGTCTTGCTCA+AGG | + | chr5_1:31364162-31364181 | None:intergenic | 55.0% | |
| ACTTGATGGGGACAACCAGC+TGG | + | chr5_1:31364861-31364880 | None:intergenic | 55.0% | |
| GGGAAAAGGGATTCTCGTGG+GGG | - | chr5_1:31365095-31365114 | Msa0727930:CDS | 55.0% | |
| GGAAAAGGGATTCTCGTGGG+GGG | - | chr5_1:31365096-31365115 | Msa0727930:CDS | 55.0% | |
| ! | CTCGTGGGGGGTGTAGAATT+TGG | - | chr5_1:31365108-31365127 | Msa0727930:CDS | 55.0% |
| CTTCGTCGTGGGGAGCTTCT+AGG | - | chr5_1:31362483-31362502 | Msa0727930:intron | 60.0% | |
| GGGGAGCTTCTAGGTGGTAC+TGG | - | chr5_1:31362492-31362511 | Msa0727930:intron | 60.0% | |
| GCTGGGAACCGGTTGCCATT+TGG | - | chr5_1:31363033-31363052 | Msa0727930:intron | 60.0% | |
| CGTCGTGGGGAGCTTCTAGG+TGG | - | chr5_1:31362486-31362505 | Msa0727930:intron | 65.0% | |
| TGCCGGCCAGCCTGAGATTC+TGG | - | chr5_1:31362596-31362615 | Msa0727930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 31361219 | 31366464 | 31361219 | ID=Msa0727930;Name=Msa0727930 |
| chr5_1 | mRNA | 31361219 | 31366464 | 31361219 | ID=Msa0727930-mRNA-1;Parent=Msa0727930;Name=Msa0727930-mRNA-1;_AED=0.06;_eAED=0.09;_QI=112|0.9|0.81|1|1|1|11|0|858 |
| chr5_1 | exon | 31361219 | 31361287 | 31361219 | ID=Msa0727930-mRNA-1:exon:10335;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31361374 | 31361460 | 31361374 | ID=Msa0727930-mRNA-1:exon:10334;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31362039 | 31362158 | 31362039 | ID=Msa0727930-mRNA-1:exon:10333;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31362790 | 31362875 | 31362790 | ID=Msa0727930-mRNA-1:exon:10332;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31362973 | 31363045 | 31362973 | ID=Msa0727930-mRNA-1:exon:10331;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31363206 | 31363604 | 31363206 | ID=Msa0727930-mRNA-1:exon:10330;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31364095 | 31364412 | 31364095 | ID=Msa0727930-mRNA-1:exon:10329;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31364547 | 31365285 | 31364547 | ID=Msa0727930-mRNA-1:exon:10328;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31365378 | 31365444 | 31365378 | ID=Msa0727930-mRNA-1:exon:10327;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31365563 | 31365701 | 31365563 | ID=Msa0727930-mRNA-1:exon:10326;Parent=Msa0727930-mRNA-1 |
| chr5_1 | exon | 31365873 | 31366464 | 31365873 | ID=Msa0727930-mRNA-1:exon:10325;Parent=Msa0727930-mRNA-1 |
| chr5_1 | five_prime_UTR | 31366353 | 31366464 | 31366353 | ID=Msa0727930-mRNA-1:five_prime_utr;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31365873 | 31366352 | 31365873 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31365563 | 31365701 | 31365563 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31365378 | 31365444 | 31365378 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31364547 | 31365285 | 31364547 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31364095 | 31364412 | 31364095 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31363206 | 31363604 | 31363206 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31362973 | 31363045 | 31362973 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31362790 | 31362875 | 31362790 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31362039 | 31362158 | 31362039 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31361374 | 31361460 | 31361374 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| chr5_1 | CDS | 31361219 | 31361287 | 31361219 | ID=Msa0727930-mRNA-1:cds;Parent=Msa0727930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
