AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0221290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0221290 MtrunA17_Chr2g0325711 87.966 831 83 2 1 827 1 818 0.0 1394
Msa0221290 MtrunA17_Chr2g0325811 65.718 878 215 11 1 842 1 828 0.0 983
Msa0221290 MtrunA17_Chr2g0325221 65.845 568 175 8 9 564 38 598 0.0 643
Msa0221290 MtrunA17_Chr2g0325221 70.707 99 29 0 744 842 599 697 1.09e-34 141
Msa0221290 MtrunA17_Chr2g0325661 46.222 900 375 10 4 846 30 877 0.0 617
Msa0221290 MtrunA17_Chr2g0325861 45.765 850 313 14 23 765 33 841 0.0 564
Msa0221290 MtrunA17_Chr2g0280141 42.238 831 367 14 58 845 57 817 2.93e-177 531
Msa0221290 MtrunA17_Chr6g0471251 42.303 851 369 15 4 846 32 768 2.87e-163 494
Msa0221290 MtrunA17_Chr2g0325321 43.532 804 340 13 1 733 1 761 2.62e-157 478
Msa0221290 MtrunA17_Chr2g0325361 44.640 681 263 11 212 845 464 1077 3.39e-132 421
Msa0221290 MtrunA17_Chr2g0325361 40.033 612 269 13 21 559 8 594 1.04e-91 312
Msa0221290 MtrunA17_Chr2g0325351 44.375 640 267 12 219 845 125 688 3.91e-130 405
Msa0221290 MtrunA17_Chr2g0325351 39.690 451 209 10 23 447 15 428 1.60e-58 212
Msa0221290 MtrunA17_Chr2g0325611 48.825 553 222 10 302 846 92 591 6.86e-128 396
Msa0221290 MtrunA17_Chr2g0325611 40.684 263 117 5 206 458 76 309 8.98e-32 131
Msa0221290 MtrunA17_Chr2g0325241 59.299 371 86 4 286 656 120 425 2.98e-120 370
Msa0221290 MtrunA17_Chr2g0325241 32.412 398 177 12 1 388 8 323 1.69e-21 98.2
Msa0221290 MtrunA17_Chr2g0325231 41.758 637 309 13 142 756 286 882 2.05e-117 377
Msa0221290 MtrunA17_Chr2g0325231 36.968 587 308 9 5 558 27 584 1.01e-71 253
Msa0221290 MtrunA17_Chr2g0325621 46.792 530 247 8 322 846 162 661 1.86e-115 365
Msa0221290 MtrunA17_Chr2g0325621 41.429 420 194 10 21 431 11 387 3.78e-53 196
Msa0221290 MtrunA17_Chr2g0325701 44.854 515 219 9 245 738 127 597 2.18e-100 324
Msa0221290 MtrunA17_Chr2g0325701 35.909 440 210 9 8 429 26 411 1.48e-49 185
Msa0221290 MtrunA17_Chr2g0325281 40.753 584 273 10 1 558 1 537 1.52e-92 303
Msa0221290 MtrunA17_Chr2g0325281 33.518 361 190 8 106 446 259 589 1.15e-21 100
Msa0221290 MtrunA17_Chr2g0325291 70.320 219 52 1 583 801 1 206 3.28e-91 286
Msa0221290 MtrunA17_Chr5g0434761 57.246 276 104 2 571 845 3 265 1.77e-90 286
Msa0221290 MtrunA17_Chr2g0325761 36.136 678 285 17 6 595 31 648 8.87e-84 282
Msa0221290 MtrunA17_Chr2g0325761 76.289 97 23 0 745 841 593 689 4.88e-37 149
Msa0221290 MtrunA17_Chr2g0325631 55.596 277 109 2 571 846 3 266 2.40e-77 251
Msa0221290 MtrunA17_Chr2g0325721 41.231 536 247 12 1 503 1 501 2.15e-72 246
Msa0221290 MtrunA17_Chr5g0416271 40.420 381 195 5 364 733 126 485 8.01e-68 233
Msa0221290 MtrunA17_Chr5g0416271 36.550 342 178 5 48 386 17 322 1.62e-39 153
Msa0221290 MtrunA17_Chr2g0325201 59.031 227 85 2 156 374 1 227 8.17e-68 224
Msa0221290 MtrunA17_Chr2g0325691 36.876 621 296 14 8 555 33 630 1.50e-67 238
Msa0221290 MtrunA17_Chr2g0325691 36.145 415 206 7 168 560 342 719 1.07e-41 163
Msa0221290 MtrunA17_Chr2g0325691 32.723 382 205 9 106 458 353 711 6.45e-18 89.0
Msa0221290 MtrunA17_Chr2g0333341 39.141 419 179 6 381 789 270 622 8.53e-60 214
Msa0221290 MtrunA17_Chr2g0333341 41.814 452 181 14 13 424 39 448 1.75e-59 214
Msa0221290 MtrunA17_Chr3g0140591 62.573 171 63 1 564 734 4 173 9.00e-56 189
Msa0221290 MtrunA17_Chr2g0332961 44.771 306 132 7 399 703 84 353 9.38e-51 182
Msa0221290 MtrunA17_Chr2g0332961 29.961 257 143 9 57 305 2 229 7.38e-12 67.8
Msa0221290 MtrunA17_Chr2g0325741 42.294 279 132 8 23 293 48 305 2.03e-46 168
Msa0221290 MtrunA17_Chr7g0235901 36.975 357 172 5 78 431 5 311 1.36e-45 166
Msa0221290 MtrunA17_Chr7g0235901 39.819 221 103 4 331 539 109 311 9.99e-24 102
Msa0221290 MtrunA17_Chr7g0235901 33.163 196 89 3 405 558 93 288 1.60e-11 66.2
Msa0221290 MtrunA17_Chr2g0325771 60.119 168 57 2 566 731 14 173 5.86e-45 159
Msa0221290 MtrunA17_Chr2g0325781 40.062 322 139 9 7 324 29 300 3.13e-44 162
Msa0221290 MtrunA17_Chr2g0325781 32.843 204 102 4 240 438 129 302 1.18e-12 69.7
Msa0221290 MtrunA17_Chr8g0361651 34.932 438 222 12 416 846 27 408 4.34e-44 166
Msa0221290 MtrunA17_Chr2g0325261 38.415 328 150 4 36 363 31 306 1.70e-43 160
Msa0221290 MtrunA17_Chr2g0325261 41.139 158 79 3 290 447 163 306 1.48e-18 87.4
Msa0221290 MtrunA17_Chr2g0325341 38.415 328 150 4 36 363 31 306 1.70e-43 160
Msa0221290 MtrunA17_Chr2g0325341 41.139 158 79 3 290 447 163 306 1.48e-18 87.4
Msa0221290 MtrunA17_Chr2g0325651 34.125 463 201 10 5 467 28 386 2.72e-43 162
Msa0221290 MtrunA17_Chr2g0325651 37.705 244 118 6 290 533 177 386 2.65e-20 94.0
Msa0221290 MtrunA17_Chr2g0325651 29.699 266 139 5 329 556 115 370 1.48e-13 73.6
Msa0221290 MtrunA17_Chr2g0332951 44.091 220 104 4 519 733 5 210 3.00e-42 153
Msa0221290 MtrunA17_Chr5g0434741 33.000 400 158 8 5 403 14 304 1.76e-38 145
Msa0221290 MtrunA17_Chr4g0024061 38.996 259 114 5 590 846 438 654 9.64e-36 145
Msa0221290 MtrunA17_Chr2g0325641 40.141 284 146 2 270 553 48 307 1.11e-35 138
Msa0221290 MtrunA17_Chr2g0325641 37.339 233 129 2 310 542 4 219 1.09e-22 100
Msa0221290 MtrunA17_Chr2g0325641 32.836 268 149 5 211 454 42 302 5.35e-15 77.4
Msa0221290 MtrunA17_Chr2g0325331 53.595 153 71 0 571 723 3 155 3.53e-35 131
Msa0221290 MtrunA17_Chr2g0325311 63.462 104 37 1 743 845 16 119 2.40e-34 127
Msa0221290 MtrunA17_Chr5g0434751 42.066 271 146 1 293 552 1 271 4.01e-33 129
Msa0221290 MtrunA17_Chr5g0434751 34.615 182 115 1 378 555 2 183 4.46e-14 73.9
Msa0221290 MtrunA17_Chr2g0325211 49.738 191 68 2 372 562 2 164 6.14e-32 123
Msa0221290 MtrunA17_Chr4g0044221 52.672 131 56 3 540 668 168 294 1.27e-30 123
Msa0221290 MtrunA17_Chr4g0044221 39.645 169 92 3 135 293 15 183 1.33e-19 90.9
Msa0221290 MtrunA17_Chr2g0325271 56.190 105 45 1 742 845 39 143 3.41e-29 113
Msa0221290 MtrunA17_Chr2g0325751 51.007 149 56 2 415 563 3 134 9.61e-28 109
Msa0221290 MtrunA17_Chr2g0325751 43.802 121 61 1 310 430 10 123 6.24e-15 73.2
Msa0221290 MtrunA17_Chr2g0325751 40.517 116 62 1 350 458 8 123 2.58e-11 62.8
Msa0221290 MtrunA17_Chr7g0235921 52.294 109 38 2 648 756 2 96 1.30e-17 79.3
Msa0221290 MtrunA17_Chr2g0325791 45.217 115 59 1 354 464 41 155 1.57e-17 84.7
Msa0221290 MtrunA17_Chr2g0325791 36.601 153 75 3 257 409 26 156 9.38e-12 67.4
Msa0221290 MtrunA17_Chr2g0325801 55.422 83 29 1 94 176 50 124 3.42e-17 78.6
Msa0221290 MtrunA17_Chr3g0140581 36.111 144 85 2 111 247 1 144 6.84e-14 70.1
Msa0221290 MtrunA17_Chr4g0053711 26.493 268 154 7 583 842 207 439 4.77e-13 72.8
Msa0221290 MtrunA17_Chr8g0337661 24.757 206 137 3 642 842 256 448 3.66e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0221290 AT5G27220.4 25.645 620 379 16 160 726 209 799 9.38e-18 89.0
Msa0221290 AT5G27220.2 25.645 620 379 16 160 726 209 799 9.38e-18 89.0
Msa0221290 AT5G27220.1 25.645 620 379 16 160 726 209 799 1.50e-17 88.6
Msa0221290 AT5G27220.1 23.932 234 155 6 595 825 858 1071 9.85e-11 66.2
Msa0221290 AT5G27220.3 25.645 620 379 16 160 726 209 799 1.50e-17 88.6
Msa0221290 AT5G27220.3 23.932 234 155 6 595 825 858 1071 9.85e-11 66.2
Msa0221290 AT5G27230.1 29.730 185 109 6 588 767 200 368 2.00e-11 68.6
Msa0221290 AT5G27230.1 26.882 186 115 3 657 837 627 796 4.82e-11 67.4
Msa0221290 AT5G48385.1 27.879 165 106 1 678 842 302 453 4.46e-11 67.0

Find 143 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCCTTCTGTCAATTTA+TGG 0.114644 2_1:+69840680 Msa0221290:CDS
CCCTCAAACTGCTTCTCTTT+TGG 0.170927 2_1:-69839520 None:intergenic
CTCCTCGTAATCTCTCTTTA+TGG 0.219438 2_1:-69838390 None:intergenic
TTTGATGAAGAAACAGAATT+TGG 0.228507 2_1:+69839640 Msa0221290:CDS
ACTTGGCTGTAGAGCTGTTT+GGG 0.252621 2_1:+69840765 Msa0221290:CDS
GAAAATTCGGCGGCGGTTCT+TGG 0.252646 2_1:+69840653 Msa0221290:CDS
TAAGTAGATCCTCCGATTCT+AGG 0.255987 2_1:-69841649 None:intergenic
AGATCCATCAAAAGTTGTTT+TGG 0.270843 2_1:+69840448 Msa0221290:CDS
AACCAACTCCATCGAAATTA+AGG 0.273079 2_1:+69841449 Msa0221290:CDS
ACTAGCAATTTCTTGATCTA+TGG 0.274347 2_1:-69841591 None:intergenic
AACACCTTTAATTTCTTAAC+AGG 0.276335 2_1:-69838191 None:intergenic
TGTAGAGCTGTTTGGGGCCA+TGG 0.282414 2_1:+69840772 Msa0221290:CDS
TTTCATCTTTCCGAGCTCTT+TGG 0.300612 2_1:-69838417 None:intergenic
AACTTGGCTGTAGAGCTGTT+TGG 0.308442 2_1:+69840764 Msa0221290:CDS
TTGATTGAATCTCCTTCATT+TGG 0.309421 2_1:-69839303 None:intergenic
GATTTATCAGTCGATTTGTT+TGG 0.319210 2_1:-69838275 None:intergenic
AACTCCTGTTAAGAAATTAA+AGG 0.326152 2_1:+69838187 Msa0221290:CDS
AGCTTTGAATTTCTCCTCTC+TGG 0.328291 2_1:-69839365 None:intergenic
GAAGGAGTTTACATTGAAGT+TGG 0.335256 2_1:+69838973 Msa0221290:CDS
CTGTCTGACGATGACATTCT+AGG 0.343740 2_1:+69840407 Msa0221290:CDS
GAAAGCACAGCTCCGTTTGA+TGG 0.353635 2_1:+69838520 Msa0221290:CDS
CGAATCTCTCAAGAATTTGC+AGG 0.359827 2_1:+69838460 Msa0221290:CDS
AGAGCTCGGAAAGATGAAAA+TGG 0.362621 2_1:+69838421 Msa0221290:CDS
TCTCATTTGCATGGCCTTCA+AGG 0.369890 2_1:-69838916 None:intergenic
AAGAAAACCAACTTGATGTC+TGG 0.370416 2_1:+69839200 Msa0221290:CDS
CGTTTGATGGACGACTTGAT+TGG 0.380958 2_1:+69838533 Msa0221290:CDS
AACTCCATCATTTGAGTTCG+TGG 0.382825 2_1:-69838791 None:intergenic
GTACTACCCCTCTTCTTAAC+AGG 0.384055 2_1:-69838116 None:intergenic
CAGATTCAAGCTCCCTCGTT+TGG 0.388671 2_1:-69839009 None:intergenic
ATTGAAGAAAGAACTTGAAT+TGG 0.390033 2_1:+69838307 Msa0221290:CDS
GAAGGAGATTCAATCAATAA+AGG 0.391641 2_1:+69839309 Msa0221290:CDS
GTAGAGCTGTTTGGGGCCAT+GGG 0.399160 2_1:+69840773 Msa0221290:CDS
AATTCTGTTTCTTCATCAAA+TGG 0.400015 2_1:-69839637 None:intergenic
AAGTCAAAACACTGAAAATT+CGG 0.401532 2_1:+69840640 Msa0221290:CDS
TCAGCATCGTCATAAGAAAC+TGG 0.417655 2_1:-69838008 None:intergenic
ATGTTCTTGAATCCGACATC+CGG 0.432729 2_1:-69838067 None:intergenic
CCTTCTGTCAATTTATGGAC+TGG 0.435016 2_1:+69840685 Msa0221290:CDS
TTGACTGAAGGTCCTTCACT+TGG 0.435587 2_1:-69839177 None:intergenic
GAAGAAGCAATTTGAAGAAA+AGG 0.445198 2_1:+69838823 Msa0221290:CDS
GCAATTTGAAGGACAATTGA+AGG 0.450182 2_1:+69839249 Msa0221290:CDS
CTACTACAATAGCAGTTAAG+AGG 0.451511 2_1:+69838138 Msa0221290:CDS
AGATGGTGAAAGAGCGAAAG+AGG 0.453109 2_1:-69837417 None:intergenic
TTGAACGAAACTCCTTCATT+CGG 0.453126 2_1:-69839135 None:intergenic
TTTACATGAGGTCTAATATC+CGG 0.453875 2_1:-69840575 None:intergenic
TTAAAAGAGAATCGGCTCAT+AGG 0.458335 2_1:+69838944 Msa0221290:CDS
TGGACTTAAGTTCCTTTCCT+CGG 0.458557 2_1:-69839345 None:intergenic
TCTTTACCGAGATTATCATA+TGG 0.458731 2_1:-69838215 None:intergenic
AGTCAAGGATAATGTTGATA+AGG 0.459861 2_1:+69838601 Msa0221290:CDS
AGTTCATCAGTTTGCTCGCA+TGG 0.460042 2_1:-69840380 None:intergenic
TTAACTTGATCTCATTTGCA+TGG 0.466179 2_1:-69838925 None:intergenic
TCAGAAAAGAAGCAATTTGA+AGG 0.468686 2_1:+69839238 Msa0221290:CDS
TCAAAGCCAAGTGAATTTGA+TGG 0.471347 2_1:+69839562 Msa0221290:CDS
CCAAAAGAGAAGCAGTTTGA+GGG 0.475101 2_1:+69839520 Msa0221290:CDS
GTCAAAAGAAAAGTTATTTG+AGG 0.475267 2_1:+69839279 Msa0221290:CDS
AACCTTAATTTCGATGGAGT+TGG 0.475641 2_1:-69841451 None:intergenic
GTTATTTGAGGACCAAATGA+AGG 0.478648 2_1:+69839291 Msa0221290:CDS
ACTTGTTTCTCAGCACAACT+TGG 0.484964 2_1:+69840748 Msa0221290:CDS
TCAAAGGAAAAGCTCCTTGA+AGG 0.485098 2_1:+69838902 Msa0221290:CDS
AGAAAACCAACTTGATGTCT+GGG 0.487627 2_1:+69839201 Msa0221290:CDS
CATTCTGAACGTGTTCTCGC+AGG 0.488898 2_1:-69841395 None:intergenic
GAAGAAGAAACAACGAGAAG+AGG 0.490093 2_1:+69838355 Msa0221290:CDS
GCCAAAAGAGAAGCAGTTTG+AGG 0.494142 2_1:+69839519 Msa0221290:CDS
GAAGGAGTTTCGTTCAAAAG+AGG 0.502074 2_1:+69839141 Msa0221290:CDS
TATTGTTTCTCTCTTAACTC+AGG 0.504531 2_1:-69839598 None:intergenic
AGATCAAGTTAAAAGAGAAT+CGG 0.509178 2_1:+69838936 Msa0221290:CDS
TTGATTCCATCTCCTTCACC+TGG 0.511821 2_1:-69839051 None:intergenic
AGAGGTGGCGCTTGAGTCAA+AGG 0.517508 2_1:+69838886 Msa0221290:CDS
AAACTTCTTTCATCAACGGC+GGG 0.518149 2_1:-69840347 None:intergenic
AGTTGTCCATCAAATTCACT+TGG 0.521463 2_1:-69839568 None:intergenic
CAATCAAGTCGTCCATCAAA+CGG 0.521752 2_1:-69838532 None:intergenic
AATTTGAAGAAAAGGTTAAG+TGG 0.522097 2_1:+69838831 Msa0221290:CDS
GGCTTGAGTTAAAAGAGAAA+AGG 0.523284 2_1:+69838852 Msa0221290:CDS
TAGAGATAACAACCTAGAAT+CGG 0.523742 2_1:+69841637 Msa0221290:CDS
GAAAAGGTGCGAAGAAAGAG+AGG 0.524751 2_1:+69838868 Msa0221290:CDS
CGATGTTCCTGTTAAGAAGA+GGG 0.528923 2_1:+69838109 Msa0221290:CDS
ACAGTTGAAATAAATGAAGA+TGG 0.529548 2_1:-69837434 None:intergenic
AGGATAATGTTGATAAGGAA+AGG 0.534620 2_1:+69838606 Msa0221290:CDS
GCAGTTTGAGGGATGCATGA+AGG 0.535597 2_1:+69839531 Msa0221290:CDS
GGGATAACCTTGTTGACAAA+GGG 0.535749 2_1:-69838046 None:intergenic
TGATCCACGAACTCAAATGA+TGG 0.538698 2_1:+69838787 Msa0221290:CDS
GTTCATCAGTTTGCTCGCAT+GGG 0.539488 2_1:-69840379 None:intergenic
AGATGATGCTGTTATTATTG+AGG 0.542560 2_1:+69840511 Msa0221290:CDS
CTTTGTCAACAAGGTTATCC+CGG 0.543825 2_1:+69838048 Msa0221290:CDS
GAAATTCAAAGCTCGAATGC+AGG 0.545511 2_1:+69839375 Msa0221290:CDS
TAACAGGAACATCGCGGTCG+CGG 0.550126 2_1:-69838100 None:intergenic
CAGTTTGAGGGATGCATGAA+GGG 0.550894 2_1:+69839532 Msa0221290:CDS
AAAGAAGCATTTCGATAGCC+AGG 0.551880 2_1:+69839033 Msa0221290:CDS
TGTTCTTGAATCCGACATCC+GGG 0.552602 2_1:-69838066 None:intergenic
GACATTCTAGGTAATTTGCA+AGG 0.553752 2_1:+69840419 Msa0221290:CDS
CCTTCACCCAGACATCAAGT+TGG 0.554057 2_1:-69839207 None:intergenic
ACATCATCTTCATCGAAAGA+AGG 0.555338 2_1:-69840710 None:intergenic
GCAACTGAAAGGCCGAATGA+AGG 0.559998 2_1:+69839123 Msa0221290:CDS
CAGAAAGATTAGATTCAGAA+AGG 0.560438 2_1:+69838729 Msa0221290:CDS
TACTACAATAGCAGTTAAGA+GGG 0.565085 2_1:+69838139 Msa0221290:CDS
ATGATGTCCCTTTGTCAACA+AGG 0.566682 2_1:+69838039 Msa0221290:CDS
CGATAGCCAGGTGAAGGAGA+TGG 0.566708 2_1:+69839045 Msa0221290:CDS
GAAGTTCAAAGTAGACGCGA+AGG 0.569577 2_1:+69839489 Msa0221290:CDS
GTGTTACCATATGATAATCT+CGG 0.570480 2_1:+69838209 Msa0221290:CDS
TGAATATGAAGACCGAGGAA+AGG 0.570645 2_1:+69839333 Msa0221290:CDS
CATCAAACTTCTTTCATCAA+CGG 0.571269 2_1:-69840351 None:intergenic
CGGGATAACCTTGTTGACAA+AGG 0.578070 2_1:-69838047 None:intergenic
AACAGAACTTCGTCAAGTCA+AGG 0.581245 2_1:+69838586 Msa0221290:CDS
GCATTTCGATAGCCAGGTGA+AGG 0.583365 2_1:+69839039 Msa0221290:CDS
TCAAAAGAGGAGCAATTCAA+AGG 0.585840 2_1:+69839154 Msa0221290:CDS
GAAATTTAATTACCAAACGA+GGG 0.595729 2_1:+69838997 Msa0221290:CDS
GAATCTCTCAAGAATTTGCA+GGG 0.596784 2_1:+69838461 Msa0221290:CDS
TCGGCTCATAGGCGAAAGGA+AGG 0.598190 2_1:+69838955 Msa0221290:CDS
GAAGGAGATGGAATCAAGAG+AGG 0.598218 2_1:+69839057 Msa0221290:CDS
TTAAAAGAGGAGCAACTGAA+AGG 0.598490 2_1:+69839112 Msa0221290:CDS
GTTCATTGAGCAGATGAATG+TGG 0.599774 2_1:-69840538 None:intergenic
AAGGAGATGGAATCAAGAGA+GGG 0.599814 2_1:+69839058 Msa0221290:CDS
AACAAGGTTATCCCGGATGT+CGG 0.599926 2_1:+69838055 Msa0221290:CDS
CTTGGCTGTAGAGCTGTTTG+GGG 0.601722 2_1:+69840766 Msa0221290:CDS
GAGGAGTGCTCCAAAGAGCT+CGG 0.602653 2_1:+69838407 Msa0221290:CDS
CAAACTTCTTTCATCAACGG+CGG 0.605644 2_1:-69840348 None:intergenic
TGAACTGAGGAGAATCTCAC+CGG 0.607816 2_1:+69840556 Msa0221290:CDS
CCAGTCCATAAATTGACAGA+AGG 0.607939 2_1:-69840685 None:intergenic
GAAGCAGCTAGAGTTAAAAG+AGG 0.609106 2_1:+69839099 Msa0221290:CDS
AGAAATTTAATTACCAAACG+AGG 0.613348 2_1:+69838996 Msa0221290:CDS
GAGAGGGGCAATTTGAAGAA+CGG 0.614689 2_1:+69839074 Msa0221290:CDS
CCAACTTGATGTCTGGGTGA+AGG 0.616627 2_1:+69839207 Msa0221290:CDS
GCAATTCAAAGGCCAAGTGA+AGG 0.616936 2_1:+69839165 Msa0221290:CDS
GCGATGTTCCTGTTAAGAAG+AGG 0.618829 2_1:+69838108 Msa0221290:CDS
AAGAGAGTACTCCTCTGTCA+AGG 0.621902 2_1:+69838240 Msa0221290:CDS
AAGAGGAGATCTGTTGAGTG+TGG 0.628165 2_1:-69837400 None:intergenic
AGAAAGGAAGAAGTTACTGA+AGG 0.628712 2_1:+69838745 Msa0221290:CDS
AAACACTGAAAATTCGGCGG+CGG 0.641205 2_1:+69840646 Msa0221290:CDS
AGATAACAACCTAGAATCGG+AGG 0.646286 2_1:+69841640 Msa0221290:CDS
TTCCATAAAGAGAGATTACG+AGG 0.648170 2_1:+69838388 Msa0221290:CDS
ATCGAGCTGAAGAGACAGAA+CGG 0.654108 2_1:+69841692 Msa0221290:CDS
AATTTGATGGACAACTGAAG+CGG 0.657849 2_1:+69839575 Msa0221290:CDS
AGAATCGGCTCATAGGCGAA+AGG 0.660495 2_1:+69838951 Msa0221290:CDS
TTCATCTGCTCAATGAACTG+AGG 0.660575 2_1:+69840543 Msa0221290:CDS
ATTTCAACTCTCCTTGACAG+AGG 0.660902 2_1:-69838251 None:intergenic
AAGGATGAATATGAAGACCG+AGG 0.673092 2_1:+69839328 Msa0221290:CDS
AAGGTGCGAAGAAAGAGAGG+TGG 0.683443 2_1:+69838871 Msa0221290:CDS
TATGCAGTTACATCGTACAC+AGG 0.696547 2_1:+69840311 Msa0221290:intron
AGGAGATGGAATCAAGAGAG+GGG 0.701041 2_1:+69839059 Msa0221290:CDS
TCAAAACACTGAAAATTCGG+CGG 0.707081 2_1:+69840643 Msa0221290:CDS
AAAGGAACTTAAGTCCAGAG+AGG 0.709934 2_1:+69839351 Msa0221290:CDS
GATGTTCCTGTTAAGAAGAG+GGG 0.714856 2_1:+69838110 Msa0221290:CDS
ACTACAATAGCAGTTAAGAG+GGG 0.730698 2_1:+69838140 Msa0221290:CDS
TCTTCTTAACAGGAACATCG+CGG 0.762881 2_1:-69838106 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTAATTTTTTTTAA+TGG + chr2_1:69837620-69837639 Msa0221290:intron 0.0%
!! GAAATTGTTATAAAATTAAA+GGG - chr2_1:69839681-69839700 None:intergenic 10.0%
!! TGAAATTGTTATAAAATTAA+AGG - chr2_1:69839682-69839701 None:intergenic 10.0%
!! TATTTATAACTATTATGAAA+GGG - chr2_1:69841547-69841566 None:intergenic 10.0%
!!! TCTTACACTTTTTAATAATA+GGG - chr2_1:69840487-69840506 None:intergenic 15.0%
!!! ATCTTACACTTTTTAATAAT+AGG - chr2_1:69840488-69840507 None:intergenic 15.0%
!!! TATTATTAAAAAGTGTAAGA+TGG + chr2_1:69840487-69840506 Msa0221290:CDS 15.0%
!!! ATTATTAAAAAGTGTAAGAT+GGG + chr2_1:69840488-69840507 Msa0221290:CDS 15.0%
!! GTATTTATAACTATTATGAA+AGG - chr2_1:69841548-69841567 None:intergenic 15.0%
!!! TAAAGATTTTGAAGAAGTAA+AGG - chr2_1:69837598-69837617 None:intergenic 20.0%
!!! TGAAAAACTTTCGTTTTTTA+TGG + chr2_1:69837760-69837779 Msa0221290:intron 20.0%
!!! TTTTGAAATATGGCTTTTAA+AGG + chr2_1:69837960-69837979 Msa0221290:exon 20.0%
!! TTTAATAAACTAGACAGATT+AGG - chr2_1:69839746-69839765 None:intergenic 20.0%
!! TATCTTCATTACTACTAATT+TGG + chr2_1:69839836-69839855 Msa0221290:intron 20.0%
!!! TTTTTTCCTTATTTTAGCAA+TGG + chr2_1:69839888-69839907 Msa0221290:intron 20.0%
!! TATCTTCATTACTACTAATT+TGG + chr2_1:69839836-69839855 Msa0221290:intron 20.0%
!!! TTTTTTCCTTATTTTAGCAA+TGG + chr2_1:69839888-69839907 Msa0221290:intron 20.0%
!!! TATAATATGATGATGATTGA+TGG + chr2_1:69840057-69840076 Msa0221290:intron 20.0%
!! CAATATAAAGATCAATACAT+AGG + chr2_1:69840082-69840101 Msa0221290:intron 20.0%
!!! TTTTCTTTCATATGGTATTA+TGG + chr2_1:69840841-69840860 Msa0221290:intron 20.0%
!!! TATATTAAGATTTTAGTTGC+AGG + chr2_1:69841019-69841038 Msa0221290:intron 20.0%
! ACAGTTGAAATAAATGAAGA+TGG - chr2_1:69837437-69837456 None:intergenic 25.0%
! AGAAGATAAAAGAAGAAATG+TGG - chr2_1:69837474-69837493 None:intergenic 25.0%
!!! TGTTTTATTTTGTTTTTCGC+AGG + chr2_1:69837921-69837940 Msa0221290:intron 25.0%
!!! TGAATGCTACTTTTGAAATA+TGG + chr2_1:69837950-69837969 Msa0221290:exon 25.0%
! AACTCCTGTTAAGAAATTAA+AGG + chr2_1:69838187-69838206 Msa0221290:CDS 25.0%
!! AACACCTTTAATTTCTTAAC+AGG - chr2_1:69838194-69838213 None:intergenic 25.0%
! ATTGAAGAAAGAACTTGAAT+TGG + chr2_1:69838307-69838326 Msa0221290:CDS 25.0%
! AATTTGAAGAAAAGGTTAAG+TGG + chr2_1:69838831-69838850 Msa0221290:CDS 25.0%
! AGATCAAGTTAAAAGAGAAT+CGG + chr2_1:69838936-69838955 Msa0221290:CDS 25.0%
! AGAAATTTAATTACCAAACG+AGG + chr2_1:69838996-69839015 Msa0221290:CDS 25.0%
! GAAATTTAATTACCAAACGA+GGG + chr2_1:69838997-69839016 Msa0221290:CDS 25.0%
!! CAAATAACTTTTCTTTTGAC+TGG - chr2_1:69839279-69839298 None:intergenic 25.0%
! GTCAAAAGAAAAGTTATTTG+AGG + chr2_1:69839279-69839298 Msa0221290:CDS 25.0%
! TCAGAAGAAAAACAATTTGA+AGG + chr2_1:69839436-69839455 Msa0221290:CDS 25.0%
!! AATTCTGTTTCTTCATCAAA+TGG - chr2_1:69839640-69839659 None:intergenic 25.0%
! TTTGATGAAGAAACAGAATT+TGG + chr2_1:69839640-69839659 Msa0221290:CDS 25.0%
! ATTATCCTTACAAACTATGT+GGG + chr2_1:69840176-69840195 Msa0221290:intron 25.0%
!! ATTTCCAAAACAACTTTTGA+TGG - chr2_1:69840455-69840474 None:intergenic 25.0%
! AAGTCAAAACACTGAAAATT+CGG + chr2_1:69840640-69840659 Msa0221290:CDS 25.0%
!!! GATGATGTTTTAAAGCTTTT+TGG + chr2_1:69840725-69840744 Msa0221290:CDS 25.0%
! TACCATATGAAAGAAAAACA+AGG - chr2_1:69840838-69840857 None:intergenic 25.0%
!! TGTTTTCATGTGTATAAATG+TGG - chr2_1:69840871-69840890 None:intergenic 25.0%
!! TCAAAAACTTTTGCATTATG+AGG + chr2_1:69840968-69840987 Msa0221290:intron 25.0%
! TAACAAAAAACATAGCAGAT+AGG - chr2_1:69841213-69841232 None:intergenic 25.0%
! AAAAAGAACCTTAATTTCGA+TGG - chr2_1:69841460-69841479 None:intergenic 25.0%
!! AGTTGTTGATTTGTTGTTCT+CGG - chr2_1:69837535-69837554 None:intergenic 30.0%
GAAAAGAAGATGAAACAATG+TGG - chr2_1:69837576-69837595 None:intergenic 30.0%
! TCAATTTTCATGCTTTGTGA+TGG + chr2_1:69837699-69837718 Msa0221290:intron 30.0%
CTGGAGTAACATATATACAT+TGG - chr2_1:69837825-69837844 None:intergenic 30.0%
TCAAGATCAATACATGATCA+AGG - chr2_1:69837876-69837895 None:intergenic 30.0%
ACAAACAAGAAGCTTTCTTT+AGG - chr2_1:69837904-69837923 None:intergenic 30.0%
TACTACAATAGCAGTTAAGA+GGG + chr2_1:69838139-69838158 Msa0221290:CDS 30.0%
GTGTTACCATATGATAATCT+CGG + chr2_1:69838209-69838228 Msa0221290:CDS 30.0%
TCTTTACCGAGATTATCATA+TGG - chr2_1:69838218-69838237 None:intergenic 30.0%
!! GATTTATCAGTCGATTTGTT+TGG - chr2_1:69838278-69838297 None:intergenic 30.0%
!! ATTGGTAGAAAAAGCATTTG+AGG + chr2_1:69838325-69838344 Msa0221290:CDS 30.0%
AAAAATTGATGAATGTGGCA+AGG + chr2_1:69838484-69838503 Msa0221290:CDS 30.0%
AGTCAAGGATAATGTTGATA+AGG + chr2_1:69838601-69838620 Msa0221290:CDS 30.0%
! AGGATAATGTTGATAAGGAA+AGG + chr2_1:69838606-69838625 Msa0221290:CDS 30.0%
! AGTACATTCAGCAATTTTTC+GGG - chr2_1:69838648-69838667 None:intergenic 30.0%
! CAGTACATTCAGCAATTTTT+CGG - chr2_1:69838649-69838668 None:intergenic 30.0%
AAAAATTGCTGAATGTACTG+TGG + chr2_1:69838649-69838668 Msa0221290:CDS 30.0%
CAGAAAGATTAGATTCAGAA+AGG + chr2_1:69838729-69838748 Msa0221290:CDS 30.0%
GAAGAAGCAATTTGAAGAAA+AGG + chr2_1:69838823-69838842 Msa0221290:CDS 30.0%
! TTAACTTGATCTCATTTGCA+TGG - chr2_1:69838928-69838947 None:intergenic 30.0%
TCAGAAAAGAAGCAATTTGA+AGG + chr2_1:69839238-69839257 Msa0221290:CDS 30.0%
TTGATTGAATCTCCTTCATT+TGG - chr2_1:69839306-69839325 None:intergenic 30.0%
GAAGGAGATTCAATCAATAA+AGG + chr2_1:69839309-69839328 Msa0221290:CDS 30.0%
CTGAATAAAAATCCTCCATT+TGG - chr2_1:69839420-69839439 None:intergenic 30.0%
AGAAAAACAATTTGAAGGAC+AGG + chr2_1:69839441-69839460 Msa0221290:CDS 30.0%
GAAAAACAATTTGAAGGACA+GGG + chr2_1:69839442-69839461 Msa0221290:CDS 30.0%
AAAAACAATTTGAAGGACAG+GGG + chr2_1:69839443-69839462 Msa0221290:CDS 30.0%
! TATTGTTTCTCTCTTAACTC+AGG - chr2_1:69839601-69839620 None:intergenic 30.0%
TCAACAACATTTGAAAGACA+CGG - chr2_1:69839711-69839730 None:intergenic 30.0%
ACTAAGCCATTGCTAAAATA+AGG - chr2_1:69839897-69839916 None:intergenic 30.0%
ACTAAGCCATTGCTAAAATA+AGG - chr2_1:69839897-69839916 None:intergenic 30.0%
CATTATCCTTACAAACTATG+TGG + chr2_1:69840175-69840194 Msa0221290:intron 30.0%
ATTGAAGGATCAGTAAATCA+AGG - chr2_1:69840256-69840275 None:intergenic 30.0%
CATCAAACTTCTTTCATCAA+CGG - chr2_1:69840354-69840373 None:intergenic 30.0%
! AGATCCATCAAAAGTTGTTT+TGG + chr2_1:69840448-69840467 Msa0221290:CDS 30.0%
AGATGATGCTGTTATTATTG+AGG + chr2_1:69840511-69840530 Msa0221290:CDS 30.0%
TTTACATGAGGTCTAATATC+CGG - chr2_1:69840578-69840597 None:intergenic 30.0%
! ATTGCTTCTTCTTTTACATG+AGG - chr2_1:69840590-69840609 None:intergenic 30.0%
! TATTTTATCTGCAAAACCCA+TGG - chr2_1:69840792-69840811 None:intergenic 30.0%
! GGTTTTGCAGATAAAATATC+AGG + chr2_1:69840794-69840813 Msa0221290:CDS 30.0%
!!! TGCCTTGTTTTTCTTTCATA+TGG + chr2_1:69840833-69840852 Msa0221290:CDS 30.0%
!!! TTAAGATTTTAGTTGCAGGT+AGG + chr2_1:69841023-69841042 Msa0221290:intron 30.0%
AAATTGAACTGATACCTAGT+TGG + chr2_1:69841046-69841065 Msa0221290:intron 30.0%
GAACTTATCTATAACTGTTC+TGG + chr2_1:69841237-69841256 Msa0221290:intron 30.0%
AAATACTTGAACATGATCAC+AGG + chr2_1:69841562-69841581 Msa0221290:intron 30.0%
ACTAGCAATTTCTTGATCTA+TGG - chr2_1:69841594-69841613 None:intergenic 30.0%
TAGAGATAACAACCTAGAAT+CGG + chr2_1:69841637-69841656 Msa0221290:CDS 30.0%
!!! TTCTTGTTTTGTCACTACGA+GGG + chr2_1:69837665-69837684 Msa0221290:intron 35.0%
!!! TGTGATGGATTCTGTTTTCT+TGG + chr2_1:69837714-69837733 Msa0221290:intron 35.0%
TATATATGTTACTCCAGCGA+TGG + chr2_1:69837828-69837847 Msa0221290:intron 35.0%
CTACTACAATAGCAGTTAAG+AGG + chr2_1:69838138-69838157 Msa0221290:CDS 35.0%
ACTACAATAGCAGTTAAGAG+GGG + chr2_1:69838140-69838159 Msa0221290:CDS 35.0%
TTCCATAAAGAGAGATTACG+AGG + chr2_1:69838388-69838407 Msa0221290:CDS 35.0%
GAATCTCTCAAGAATTTGCA+GGG + chr2_1:69838461-69838480 Msa0221290:CDS 35.0%
CAGGGAAAAATTGATGAATG+TGG + chr2_1:69838479-69838498 Msa0221290:CDS 35.0%
AGAAAGGAAGAAGTTACTGA+AGG + chr2_1:69838745-69838764 Msa0221290:CDS 35.0%
GGCTTGAGTTAAAAGAGAAA+AGG + chr2_1:69838852-69838871 Msa0221290:CDS 35.0%
! TTAAAAGAGAATCGGCTCAT+AGG + chr2_1:69838944-69838963 Msa0221290:CDS 35.0%
GAAGGAGTTTACATTGAAGT+TGG + chr2_1:69838973-69838992 Msa0221290:CDS 35.0%
TTAAAAGAGGAGCAACTGAA+AGG + chr2_1:69839112-69839131 Msa0221290:CDS 35.0%
TTGAACGAAACTCCTTCATT+CGG - chr2_1:69839138-69839157 None:intergenic 35.0%
TCAAAAGAGGAGCAATTCAA+AGG + chr2_1:69839154-69839173 Msa0221290:CDS 35.0%
!!! GTTGGTTTTCTTTTGACTGA+AGG - chr2_1:69839192-69839211 None:intergenic 35.0%
AAGAAAACCAACTTGATGTC+TGG + chr2_1:69839200-69839219 Msa0221290:CDS 35.0%
AGAAAACCAACTTGATGTCT+GGG + chr2_1:69839201-69839220 Msa0221290:CDS 35.0%
GCAATTTGAAGGACAATTGA+AGG + chr2_1:69839249-69839268 Msa0221290:CDS 35.0%
GTTATTTGAGGACCAAATGA+AGG + chr2_1:69839291-69839310 Msa0221290:CDS 35.0%
TCAAAGCCAAGTGAATTTGA+TGG + chr2_1:69839562-69839581 Msa0221290:CDS 35.0%
AGTTGTCCATCAAATTCACT+TGG - chr2_1:69839571-69839590 None:intergenic 35.0%
! AATTTGATGGACAACTGAAG+CGG + chr2_1:69839575-69839594 Msa0221290:CDS 35.0%
TGATCCTTCAATAAATACCG+AGG + chr2_1:69840264-69840283 Msa0221290:intron 35.0%
! GACATTCTAGGTAATTTGCA+AGG + chr2_1:69840419-69840438 Msa0221290:CDS 35.0%
TCAAAACACTGAAAATTCGG+CGG + chr2_1:69840643-69840662 Msa0221290:CDS 35.0%
CTACTCCTTCTGTCAATTTA+TGG + chr2_1:69840680-69840699 Msa0221290:CDS 35.0%
ACATCATCTTCATCGAAAGA+AGG - chr2_1:69840713-69840732 None:intergenic 35.0%
TCAAGTATATGAAGCCAACT+AGG - chr2_1:69841063-69841082 None:intergenic 35.0%
ACATGTCAATTCTCTCTTGA+AGG - chr2_1:69841127-69841146 None:intergenic 35.0%
TCAAGAGAGAATTGACATGT+TGG + chr2_1:69841127-69841146 Msa0221290:intron 35.0%
GATTATCAACAAAGTCTGCA+AGG - chr2_1:69841293-69841312 None:intergenic 35.0%
AACCAACTCCATCGAAATTA+AGG + chr2_1:69841449-69841468 Msa0221290:CDS 35.0%
AACCTTAATTTCGATGGAGT+TGG - chr2_1:69841454-69841473 None:intergenic 35.0%
GTGTGAAGATGGAATGTTAA+GGG - chr2_1:69841525-69841544 None:intergenic 35.0%
! ATTATGAAAGGGTGTGAAGA+TGG - chr2_1:69841536-69841555 None:intergenic 35.0%
! CTTTTACTGGAATTAGTGAG+TGG + chr2_1:69841723-69841742 Msa0221290:three_prime_UTR 35.0%
!!! GTTCTTGTTTTGTCACTACG+AGG + chr2_1:69837664-69837683 Msa0221290:intron 40.0%
!!! TCTTGTTTTGTCACTACGAG+GGG + chr2_1:69837666-69837685 Msa0221290:intron 40.0%
TCAGCATCGTCATAAGAAAC+TGG - chr2_1:69838011-69838030 None:intergenic 40.0%
ATGATGTCCCTTTGTCAACA+AGG + chr2_1:69838039-69838058 Msa0221290:CDS 40.0%
GGGATAACCTTGTTGACAAA+GGG - chr2_1:69838049-69838068 None:intergenic 40.0%
CTTTGTCAACAAGGTTATCC+CGG + chr2_1:69838048-69838067 Msa0221290:CDS 40.0%
ATGTTCTTGAATCCGACATC+CGG - chr2_1:69838070-69838089 None:intergenic 40.0%
TCTTCTTAACAGGAACATCG+CGG - chr2_1:69838109-69838128 None:intergenic 40.0%
CGATGTTCCTGTTAAGAAGA+GGG + chr2_1:69838109-69838128 Msa0221290:CDS 40.0%
GATGTTCCTGTTAAGAAGAG+GGG + chr2_1:69838110-69838129 Msa0221290:CDS 40.0%
ATTTCAACTCTCCTTGACAG+AGG - chr2_1:69838254-69838273 None:intergenic 40.0%
GAAGAAGAAACAACGAGAAG+AGG + chr2_1:69838355-69838374 Msa0221290:CDS 40.0%
CTCCTCGTAATCTCTCTTTA+TGG - chr2_1:69838393-69838412 None:intergenic 40.0%
TTTCATCTTTCCGAGCTCTT+TGG - chr2_1:69838420-69838439 None:intergenic 40.0%
AGAGCTCGGAAAGATGAAAA+TGG + chr2_1:69838421-69838440 Msa0221290:CDS 40.0%
CGAATCTCTCAAGAATTTGC+AGG + chr2_1:69838460-69838479 Msa0221290:CDS 40.0%
CAATCAAGTCGTCCATCAAA+CGG - chr2_1:69838535-69838554 None:intergenic 40.0%
AACAGAACTTCGTCAAGTCA+AGG + chr2_1:69838586-69838605 Msa0221290:CDS 40.0%
TGATCCACGAACTCAAATGA+TGG + chr2_1:69838787-69838806 Msa0221290:CDS 40.0%
! AACTCCATCATTTGAGTTCG+TGG - chr2_1:69838794-69838813 None:intergenic 40.0%
TCAAAGGAAAAGCTCCTTGA+AGG + chr2_1:69838902-69838921 Msa0221290:CDS 40.0%
!! AAAGAAGCATTTCGATAGCC+AGG + chr2_1:69839033-69839052 Msa0221290:CDS 40.0%
AAGGAGATGGAATCAAGAGA+GGG + chr2_1:69839058-69839077 Msa0221290:CDS 40.0%
GAAGCAGCTAGAGTTAAAAG+AGG + chr2_1:69839099-69839118 Msa0221290:CDS 40.0%
GAAGGAGTTTCGTTCAAAAG+AGG + chr2_1:69839141-69839160 Msa0221290:CDS 40.0%
AAGGATGAATATGAAGACCG+AGG + chr2_1:69839328-69839347 Msa0221290:CDS 40.0%
TGAATATGAAGACCGAGGAA+AGG + chr2_1:69839333-69839352 Msa0221290:CDS 40.0%
TGGACTTAAGTTCCTTTCCT+CGG - chr2_1:69839348-69839367 None:intergenic 40.0%
AAAGGAACTTAAGTCCAGAG+AGG + chr2_1:69839351-69839370 Msa0221290:CDS 40.0%
!! AGCTTTGAATTTCTCCTCTC+TGG - chr2_1:69839368-69839387 None:intergenic 40.0%
GAAATTCAAAGCTCGAATGC+AGG + chr2_1:69839375-69839394 Msa0221290:CDS 40.0%
CCAAAAGAGAAGCAGTTTGA+GGG + chr2_1:69839520-69839539 Msa0221290:CDS 40.0%
GCTTCCTCGGTATTTATTGA+AGG - chr2_1:69840271-69840290 None:intergenic 40.0%
AGCACATATTTCAGCTTCCT+CGG - chr2_1:69840284-69840303 None:intergenic 40.0%
TATGCAGTTACATCGTACAC+AGG + chr2_1:69840311-69840330 Msa0221290:intron 40.0%
AAACTTCTTTCATCAACGGC+GGG - chr2_1:69840350-69840369 None:intergenic 40.0%
CAAACTTCTTTCATCAACGG+CGG - chr2_1:69840351-69840370 None:intergenic 40.0%
GTTCATTGAGCAGATGAATG+TGG - chr2_1:69840541-69840560 None:intergenic 40.0%
TTCATCTGCTCAATGAACTG+AGG + chr2_1:69840543-69840562 Msa0221290:CDS 40.0%
CCAGTCCATAAATTGACAGA+AGG - chr2_1:69840688-69840707 None:intergenic 40.0%
CCTTCTGTCAATTTATGGAC+TGG + chr2_1:69840685-69840704 Msa0221290:CDS 40.0%
! ACTTGTTTCTCAGCACAACT+TGG + chr2_1:69840748-69840767 Msa0221290:CDS 40.0%
TGTCCCAACTTCTCTTTGAT+GGG - chr2_1:69840925-69840944 None:intergenic 40.0%
TTGTCCCAACTTCTCTTTGA+TGG - chr2_1:69840926-69840945 None:intergenic 40.0%
AAGGATGAGAGAGAACAGTT+TGG - chr2_1:69841108-69841127 None:intergenic 40.0%
GACATGTTGGTCAATATGCT+TGG + chr2_1:69841140-69841159 Msa0221290:intron 40.0%
! GAATGTTAAGGGTGTGAAGA+TGG - chr2_1:69841514-69841533 None:intergenic 40.0%
GGTGTGAAGATGGAATGTTA+AGG - chr2_1:69841526-69841545 None:intergenic 40.0%
AGATAACAACCTAGAATCGG+AGG + chr2_1:69841640-69841659 Msa0221290:CDS 40.0%
TAAGTAGATCCTCCGATTCT+AGG - chr2_1:69841652-69841671 None:intergenic 40.0%
! AACGGCAGATAGTCTTTTAC+TGG + chr2_1:69841710-69841729 Msa0221290:exon 40.0%
AAGAGGAGATCTGTTGAGTG+TGG - chr2_1:69837403-69837422 None:intergenic 45.0%
AGATGGTGAAAGAGCGAAAG+AGG - chr2_1:69837420-69837439 None:intergenic 45.0%
AACAAAACAGCATCCATCGC+TGG - chr2_1:69837844-69837863 None:intergenic 45.0%
CGGGATAACCTTGTTGACAA+AGG - chr2_1:69838050-69838069 None:intergenic 45.0%
AACAAGGTTATCCCGGATGT+CGG + chr2_1:69838055-69838074 Msa0221290:CDS 45.0%
TGTTCTTGAATCCGACATCC+GGG - chr2_1:69838069-69838088 None:intergenic 45.0%
GCGATGTTCCTGTTAAGAAG+AGG + chr2_1:69838108-69838127 Msa0221290:CDS 45.0%
GTACTACCCCTCTTCTTAAC+AGG - chr2_1:69838119-69838138 None:intergenic 45.0%
!! AAGAGAGTACTCCTCTGTCA+AGG + chr2_1:69838240-69838259 Msa0221290:CDS 45.0%
! CGTTTGATGGACGACTTGAT+TGG + chr2_1:69838533-69838552 Msa0221290:CDS 45.0%
! GAAAAGGTGCGAAGAAAGAG+AGG + chr2_1:69838868-69838887 Msa0221290:CDS 45.0%
TCTCATTTGCATGGCCTTCA+AGG - chr2_1:69838919-69838938 None:intergenic 45.0%
TTGATTCCATCTCCTTCACC+TGG - chr2_1:69839054-69839073 None:intergenic 45.0%
GAAGGAGATGGAATCAAGAG+AGG + chr2_1:69839057-69839076 Msa0221290:CDS 45.0%
AGGAGATGGAATCAAGAGAG+GGG + chr2_1:69839059-69839078 Msa0221290:CDS 45.0%
GAGAGGGGCAATTTGAAGAA+CGG + chr2_1:69839074-69839093 Msa0221290:CDS 45.0%
GCAATTCAAAGGCCAAGTGA+AGG + chr2_1:69839165-69839184 Msa0221290:CDS 45.0%
TTGACTGAAGGTCCTTCACT+TGG - chr2_1:69839180-69839199 None:intergenic 45.0%
! CAAGCGTTTTGCAAGCCAAA+TGG + chr2_1:69839402-69839421 Msa0221290:CDS 45.0%
GAAGTTCAAAGTAGACGCGA+AGG + chr2_1:69839489-69839508 Msa0221290:CDS 45.0%
GCCAAAAGAGAAGCAGTTTG+AGG + chr2_1:69839519-69839538 Msa0221290:CDS 45.0%
! CCCTCAAACTGCTTCTCTTT+TGG - chr2_1:69839523-69839542 None:intergenic 45.0%
CAGTTTGAGGGATGCATGAA+GGG + chr2_1:69839532-69839551 Msa0221290:CDS 45.0%
! CCTCTCCCACATAGTTTGTA+AGG - chr2_1:69840184-69840203 None:intergenic 45.0%
CCTTACAAACTATGTGGGAG+AGG + chr2_1:69840181-69840200 Msa0221290:intron 45.0%
! GTTCATCAGTTTGCTCGCAT+GGG - chr2_1:69840382-69840401 None:intergenic 45.0%
! AGTTCATCAGTTTGCTCGCA+TGG - chr2_1:69840383-69840402 None:intergenic 45.0%
CTGTCTGACGATGACATTCT+AGG + chr2_1:69840407-69840426 Msa0221290:CDS 45.0%
TGAACTGAGGAGAATCTCAC+CGG + chr2_1:69840556-69840575 Msa0221290:CDS 45.0%
AAACACTGAAAATTCGGCGG+CGG + chr2_1:69840646-69840665 Msa0221290:CDS 45.0%
AACTTGGCTGTAGAGCTGTT+TGG + chr2_1:69840764-69840783 Msa0221290:CDS 45.0%
ACTTGGCTGTAGAGCTGTTT+GGG + chr2_1:69840765-69840784 Msa0221290:CDS 45.0%
TCTTTGATGGGAGGAACACA+TGG - chr2_1:69840913-69840932 None:intergenic 45.0%
TCCTCCCATCAAAGAGAAGT+TGG + chr2_1:69840918-69840937 Msa0221290:intron 45.0%
CCTCCCATCAAAGAGAAGTT+GGG + chr2_1:69840919-69840938 Msa0221290:intron 45.0%
ATCGAGCTGAAGAGACAGAA+CGG + chr2_1:69841692-69841711 Msa0221290:CDS 45.0%
! GAAAGCACAGCTCCGTTTGA+TGG + chr2_1:69838520-69838539 Msa0221290:CDS 50.0%
AAGGTGCGAAGAAAGAGAGG+TGG + chr2_1:69838871-69838890 Msa0221290:CDS 50.0%
! AGAATCGGCTCATAGGCGAA+AGG + chr2_1:69838951-69838970 Msa0221290:CDS 50.0%
CAGATTCAAGCTCCCTCGTT+TGG - chr2_1:69839012-69839031 None:intergenic 50.0%
GCATTTCGATAGCCAGGTGA+AGG + chr2_1:69839039-69839058 Msa0221290:CDS 50.0%
GCAACTGAAAGGCCGAATGA+AGG + chr2_1:69839123-69839142 Msa0221290:CDS 50.0%
CCTTCACCCAGACATCAAGT+TGG - chr2_1:69839210-69839229 None:intergenic 50.0%
CCAACTTGATGTCTGGGTGA+AGG + chr2_1:69839207-69839226 Msa0221290:CDS 50.0%
! GCGTTTTGCAAGCCAAATGG+AGG + chr2_1:69839405-69839424 Msa0221290:CDS 50.0%
GCAGTTTGAGGGATGCATGA+AGG + chr2_1:69839531-69839550 Msa0221290:CDS 50.0%
CTTGGCTGTAGAGCTGTTTG+GGG + chr2_1:69840766-69840785 Msa0221290:CDS 50.0%
CCCAACTTCTCTTTGATGGG+AGG - chr2_1:69840922-69840941 None:intergenic 50.0%
CATTCTGAACGTGTTCTCGC+AGG - chr2_1:69841398-69841417 None:intergenic 50.0%
TAACAGGAACATCGCGGTCG+CGG - chr2_1:69838103-69838122 None:intergenic 55.0%
!! GAGGAGTGCTCCAAAGAGCT+CGG + chr2_1:69838407-69838426 Msa0221290:CDS 55.0%
AGAGGTGGCGCTTGAGTCAA+AGG + chr2_1:69838886-69838905 Msa0221290:CDS 55.0%
TCGGCTCATAGGCGAAAGGA+AGG + chr2_1:69838955-69838974 Msa0221290:CDS 55.0%
CGATAGCCAGGTGAAGGAGA+TGG + chr2_1:69839045-69839064 Msa0221290:CDS 55.0%
GAAAATTCGGCGGCGGTTCT+TGG + chr2_1:69840653-69840672 Msa0221290:CDS 55.0%
! TGTAGAGCTGTTTGGGGCCA+TGG + chr2_1:69840772-69840791 Msa0221290:CDS 55.0%
! GTAGAGCTGTTTGGGGCCAT+GGG + chr2_1:69840773-69840792 Msa0221290:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 69837396 69841748 69837396 ID=Msa0221290;Name=Msa0221290
chr2_1 mRNA 69837396 69841748 69837396 ID=Msa0221290-mRNA-1;Parent=Msa0221290;Name=Msa0221290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=85|0.5|0.8|1|0.75|0.6|5|27|846
chr2_1 exon 69837396 69837454 69837396 ID=Msa0221290-mRNA-1:exon:19803;Parent=Msa0221290-mRNA-1
chr2_1 exon 69837943 69839661 69837943 ID=Msa0221290-mRNA-1:exon:19804;Parent=Msa0221290-mRNA-1
chr2_1 exon 69840318 69840854 69840318 ID=Msa0221290-mRNA-1:exon:19805;Parent=Msa0221290-mRNA-1
chr2_1 exon 69841298 69841470 69841298 ID=Msa0221290-mRNA-1:exon:19806;Parent=Msa0221290-mRNA-1
chr2_1 exon 69841584 69841748 69841584 ID=Msa0221290-mRNA-1:exon:19807;Parent=Msa0221290-mRNA-1
chr2_1 five_prime_UTR 69837396 69837454 69837396 ID=Msa0221290-mRNA-1:five_prime_utr;Parent=Msa0221290-mRNA-1
chr2_1 five_prime_UTR 69837943 69837968 69837943 ID=Msa0221290-mRNA-1:five_prime_utr;Parent=Msa0221290-mRNA-1
chr2_1 CDS 69837969 69839661 69837969 ID=Msa0221290-mRNA-1:cds;Parent=Msa0221290-mRNA-1
chr2_1 CDS 69840318 69840854 69840318 ID=Msa0221290-mRNA-1:cds;Parent=Msa0221290-mRNA-1
chr2_1 CDS 69841298 69841470 69841298 ID=Msa0221290-mRNA-1:cds;Parent=Msa0221290-mRNA-1
chr2_1 CDS 69841584 69841721 69841584 ID=Msa0221290-mRNA-1:cds;Parent=Msa0221290-mRNA-1
chr2_1 three_prime_UTR 69841722 69841748 69841722 ID=Msa0221290-mRNA-1:three_prime_utr;Parent=Msa0221290-mRNA-1
Gene Sequence

>Msa0221290

ATGGCTTTTAAAGGTTCTGATAACTCAAATTTGAGCAATCCAGTTTCTTATGACGATGCTGATTATGATGATGATGTCCCTTTGTCAACAAGGTTATCCCGGATGTCGGATTCAAGAACATGCAGTAGCAACCGCGACCGCGATGTTCCTGTTAAGAAGAGGGGTAGTACTACTACAATAGCAGTTAAGAGGGGATTTGATAGCAACAGTTCATCGCAAACTCCTGTTAAGAAATTAAAGGTGTTACCATATGATAATCTCGGTAAAGATAAAGAGAGTACTCCTCTGTCAAGGAGAGTTGAAATTCCAAACAAATCGACTGATAAATCATTTTCTTCATTGAAGAAAGAACTTGAATTGGTAGAAAAAGCATTTGAGGAATGTAAGAAGAAGAAACAACGAGAAGAGGAGAGATTGATTTCCATAAAGAGAGATTACGAGGAGTGCTCCAAAGAGCTCGGAAAGATGAAAATGGAAATTAGTAGTGCTAGCGAATCTCTCAAGAATTTGCAGGGAAAAATTGATGAATGTGGCAAGGATTTTGATGCAAAGAAAGCACAGCTCCGTTTGATGGACGACTTGATTGGAGATCGCAAGCAAGAGCTCAAGATAAAAGAAACAGAACTTCGTCAAGTCAAGGATAATGTTGATAAGGAAAGGAAATTTGACACTCTTTCCCGAAAAATTGCTGAATGTACTGTGGAACTTAAGACTAAAGAGAAAGAGCGTGATGCGATGAAAAAACAAATTGACGAACAAGCAGAAAGATTAGATTCAGAAAGGAAGAAGTTACTGAAGGTAATGCAATTAAATAAGAATGATCCACGAACTCAAATGATGGAGTTTGAGTCAACGAAGAAGCAATTTGAAGAAAAGGTTAAGTGGCTTGAGTTAAAAGAGAAAAGGTGCGAAGAAAGAGAGGTGGCGCTTGAGTCAAAGGAAAAGCTCCTTGAAGGCCATGCAAATGAGATCAAGTTAAAAGAGAATCGGCTCATAGGCGAAAGGAAGGAGTTTACATTGAAGTTGGAGAAATTTAATTACCAAACGAGGGAGCTTGAATCTGAAAAGAAGCATTTCGATAGCCAGGTGAAGGAGATGGAATCAAGAGAGGGGCAATTTGAAGAACGGTCGAAGCAGCTAGAGTTAAAAGAGGAGCAACTGAAAGGCCGAATGAAGGAGTTTCGTTCAAAAGAGGAGCAATTCAAAGGCCAAGTGAAGGACCTTCAGTCAAAAGAAAACCAACTTGATGTCTGGGTGAAGGAGCTCGAATCAGAAAAGAAGCAATTTGAAGGACAATTGAAGGAGTTCCAGTCAAAAGAAAAGTTATTTGAGGACCAAATGAAGGAGATTCAATCAATAAAGGATGAATATGAAGACCGAGGAAAGGAACTTAAGTCCAGAGAGGAGAAATTCAAAGCTCGAATGCAGGAGCTCAAGCGTTTTGCAAGCCAAATGGAGGATTTTTATTCAGAAGAAAAACAATTTGAAGGACAGGGGAAAGAGACTGAATCAGAAGACAAGAAGTTCAAAGTAGACGCGAAGGAGCTCAAGCCAAAAGAGAAGCAGTTTGAGGGATGCATGAAGGGTCTTGAGTCAAAGCCAAGTGAATTTGATGGACAACTGAAGCGGCCTGAGTTAAGAGAGAAACAATATGATGCTTTAATAGAACCATTTGATGAAGAAACAGAATTTGTTACATCGTACACAGGTAATCAATTAAGTCCCGCCGTTGATGAAAGAAGTTTGATGTTGCTCCCATGCGAGCAAACTGATGAACTTGAGCTGTCTGACGATGACATTCTAGGTAATTTGCAAGGCTTTTCAGATCCATCAAAAGTTGTTTTGGAAATAATACAGAACCCTATTATTAAAAAGTGTAAGATGGGAGATGATGCTGTTATTATTGAGGATAGCCACATTCATCTGCTCAATGAACTGAGGAGAATCTCACCGGATATTAGACCTCATGTAAAAGAAGAAGCAATGAAGTTAGCACTTGATTTGAAAGCTAACATAAGTCAAAACACTGAAAATTCGGCGGCGGTTCTTGGTTTTCTACTCCTTCTGTCAATTTATGGACTGGTTCCTTCTTTCGATGAAGATGATGTTTTAAAGCTTTTTGGACTTGTTTCTCAGCACAACTTGGCTGTAGAGCTGTTTGGGGCCATGGGTTTTGCAGATAAAATATCAGGCAAGATATCTAAAATTTGCCTTGTTTTTCTTTCATATGACTTTGTTGATAATCTGAGAAAGAGAGAACAATATATTGAAGCTGTTAGATTCAGTTGTGCATTTAACTTGAGCAACAATAATCAATTAGTTGATCTCCTGCGAGAACACGTTCAGAATGCAAAACTGATTTCTGAGAGTACTTGCATGAAAACCAACTCCATCGAAATTAAGGAAAAAGCCATAGATCAAGAAATTGCTAGTCTCGAAGCTGTAGTGCAGTGTATTAGAGATAACAACCTAGAATCGGAGGATCTACTTAACAACATTGACGATCGTATTATCGAGCTGAAGAGACAGAACGGCAGATAG

Protein sequence

>Msa0221290

MAFKGSDNSNLSNPVSYDDADYDDDVPLSTRLSRMSDSRTCSSNRDRDVPVKKRGSTTTIAVKRGFDSNSSSQTPVKKLKVLPYDNLGKDKESTPLSRRVEIPNKSTDKSFSSLKKELELVEKAFEECKKKKQREEERLISIKRDYEECSKELGKMKMEISSASESLKNLQGKIDECGKDFDAKKAQLRLMDDLIGDRKQELKIKETELRQVKDNVDKERKFDTLSRKIAECTVELKTKEKERDAMKKQIDEQAERLDSERKKLLKVMQLNKNDPRTQMMEFESTKKQFEEKVKWLELKEKRCEEREVALESKEKLLEGHANEIKLKENRLIGERKEFTLKLEKFNYQTRELESEKKHFDSQVKEMESREGQFEERSKQLELKEEQLKGRMKEFRSKEEQFKGQVKDLQSKENQLDVWVKELESEKKQFEGQLKEFQSKEKLFEDQMKEIQSIKDEYEDRGKELKSREEKFKARMQELKRFASQMEDFYSEEKQFEGQGKETESEDKKFKVDAKELKPKEKQFEGCMKGLESKPSEFDGQLKRPELREKQYDALIEPFDEETEFVTSYTGNQLSPAVDERSLMLLPCEQTDELELSDDDILGNLQGFSDPSKVVLEIIQNPIIKKCKMGDDAVIIEDSHIHLLNELRRISPDIRPHVKEEAMKLALDLKANISQNTENSAAVLGFLLLLSIYGLVPSFDEDDVLKLFGLVSQHNLAVELFGAMGFADKISGKISKICLVFLSYDFVDNLRKREQYIEAVRFSCAFNLSNNNQLVDLLREHVQNAKLISESTCMKTNSIEIKEKAIDQEIASLEAVVQCIRDNNLESEDLLNNIDDRIIELKRQNGR*