AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440220 MtrunA17_Chr1g0209861 96.748 123 4 0 10 132 314 436 6.91e-85 254
Msa1440220 MtrunA17_Chr8g0390971 54.264 129 46 6 9 129 289 412 2.00e-34 123
Msa1440220 MtrunA17_Chr5g0431351 44.545 110 41 3 13 120 125 216 1.30e-20 83.2
Msa1440220 MtrunA17_Chr4g0071811 46.154 104 44 4 17 120 293 384 2.40e-18 79.3
Msa1440220 MtrunA17_Chr7g0226451 40.458 131 55 4 13 120 221 351 3.07e-18 79.0
Msa1440220 MtrunA17_Chr1g0150471 47.561 82 36 2 47 123 221 300 2.73e-13 65.1
Msa1440220 MtrunA17_Chr3g0136701 63.636 55 16 1 66 120 224 274 5.04e-13 63.9
Msa1440220 MtrunA17_Chr4g0072871 46.914 81 32 2 51 120 260 340 3.60e-12 62.0
Msa1440220 MtrunA17_Chr7g0220721 69.767 43 13 0 78 120 327 369 7.80e-12 61.2
Msa1440220 MtrunA17_Chr7g0276361 51.020 49 24 0 78 126 541 589 2.01e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440220 AT1G68520.1 60.331 121 44 4 8 125 285 404 6.48e-36 127
Msa1440220 AT1G25440.1 62.162 111 36 4 14 120 295 403 2.70e-33 120
Msa1440220 AT1G73870.1 54.237 118 40 3 14 123 279 390 2.92e-28 107
Msa1440220 AT4G25990.1 49.533 107 38 3 14 120 293 383 1.91e-23 94.0
Msa1440220 AT5G57180.2 43.860 114 46 2 14 127 337 432 1.05e-22 92.4
Msa1440220 AT4G25990.2 43.443 122 38 4 14 120 293 398 3.37e-20 85.1
Msa1440220 AT4G25990.3 47.525 101 37 3 14 114 293 377 1.67e-19 83.2
Msa1440220 AT5G14370.1 43.860 114 51 4 13 120 230 336 2.40e-19 82.4
Msa1440220 AT5G57180.1 43.564 101 39 2 14 114 337 419 7.01e-18 78.6
Msa1440220 AT1G49130.1 45.794 107 37 3 15 121 236 321 9.24e-18 77.8
Msa1440220 AT1G49130.2 45.794 107 37 3 15 121 229 314 1.06e-17 77.4
Msa1440220 AT1G07050.1 46.903 113 33 5 14 122 106 195 1.68e-17 75.1
Msa1440220 AT1G07050.2 44.762 105 31 5 14 114 106 187 8.25e-13 62.8
Msa1440220 AT5G24930.1 52.113 71 28 1 56 120 267 337 9.49e-13 63.9
Msa1440220 AT5G57660.1 69.767 43 13 0 78 120 285 327 1.01e-11 61.2
Msa1440220 AT3G02380.1 69.767 43 13 0 78 120 278 320 1.71e-11 60.5
Msa1440220 AT2G24790.1 69.767 43 13 0 78 120 229 271 2.74e-11 59.7
Msa1440220 AT5G15840.1 69.767 43 13 0 78 120 306 348 4.25e-11 59.3
Msa1440220 AT5G15850.1 67.442 43 14 0 78 120 286 328 4.66e-11 59.3

Find 41 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATCTCCCTTTCATTCT+TGG 0.172964 tig0029039:-1335 None:intergenic
ATTATTTATCAGGGAACTTT+TGG 0.202916 tig0029039:+1143 Msa1440220:intron
TGAAAATAATGATTATAATA+AGG 0.203891 tig0029039:+121 Msa1440220:CDS
TTCTCATCAGCATCCAAATT+TGG 0.222169 tig0029039:-231 None:intergenic
ATTTGCTAAAAGTAATAATT+TGG 0.227746 tig0029039:+1455 Msa1440220:three_prime_UTR
TATGGTGAGTTTGGTGGATA+TGG 0.250845 tig0029039:+1185 Msa1440220:CDS
TAATGGTGACAAGCCAAATT+TGG 0.271510 tig0029039:+218 Msa1440220:CDS
CTGCCTCCATCTACCGTTAC+TGG 0.277791 tig0029039:-1215 None:intergenic
ACGGAGGTTCATTATGCTTA+TGG 0.290853 tig0029039:+1167 Msa1440220:CDS
CATTATGCTTATGGTGAGTT+TGG 0.336402 tig0029039:+1176 Msa1440220:CDS
GAAAATAATGATTATAATAA+GGG 0.345415 tig0029039:+122 Msa1440220:CDS
GGTTGTTCTCAAAGAAAATA+AGG 0.347288 tig0029039:+1279 Msa1440220:CDS
CATTAGTCCAGGGACACTTT+TGG 0.361781 tig0029039:-200 None:intergenic
AGAAAATAAGGTACGAGGTT+AGG 0.382846 tig0029039:+1291 Msa1440220:CDS
CAAAAGTGTCCCTGGACTAA+TGG 0.395385 tig0029039:+201 Msa1440220:CDS
TGTCATCCAGTAACGGTAGA+TGG 0.408098 tig0029039:+1209 Msa1440220:CDS
GCAGAGAGGCAAGGGTTTCA+AGG 0.431755 tig0029039:+1234 Msa1440220:CDS
ATAAATTATACCATGCAATC+AGG 0.445629 tig0029039:-258 None:intergenic
TGAAAGGGAGATTTGTGAAG+AGG 0.460030 tig0029039:+1342 Msa1440220:CDS
ATTTGGATGCTGATGAGAAC+TGG 0.465263 tig0029039:+235 Msa1440220:CDS
ATTCTCATGAAACACTTAAG+AGG 0.476793 tig0029039:+75 None:intergenic
TGGCTTGTCACCATTAGTCC+AGG 0.479305 tig0029039:-211 None:intergenic
TATGCTTATGGTGAGTTTGG+TGG 0.509644 tig0029039:+1179 Msa1440220:CDS
AGATGGAGGCAGAGAGGCAA+GGG 0.513332 tig0029039:+1226 Msa1440220:CDS
GAAAGGGAGATTTGTGAAGA+GGG 0.514753 tig0029039:+1343 Msa1440220:CDS
GAGAAGAGACCAAGAATGAA+AGG 0.514881 tig0029039:+1326 Msa1440220:CDS
GGGATAGCCAAAAGTGTCCC+TGG 0.521182 tig0029039:+193 Msa1440220:CDS
ATGATGCAGTAATCATTGCA+TGG 0.567325 tig0029039:+172 Msa1440220:CDS
AGAAGAGACCAAGAATGAAA+GGG 0.570209 tig0029039:+1327 Msa1440220:CDS
TGATGCAGTAATCATTGCAT+GGG 0.576146 tig0029039:+173 Msa1440220:CDS
TAGATGGAGGCAGAGAGGCA+AGG 0.578587 tig0029039:+1225 Msa1440220:CDS
GGCTTGTCACCATTAGTCCA+GGG 0.579867 tig0029039:-210 None:intergenic
AGGAAATGTTGGAACTGCAA+AGG 0.601959 tig0029039:-1369 None:intergenic
TGAGAACTGGCCTGATTGCA+TGG 0.605682 tig0029039:+248 Msa1440220:CDS
CTCAAAGAAAATAAGGTACG+AGG 0.632554 tig0029039:+1286 Msa1440220:CDS
CATGAAACACTTAAGAGGTG+AGG 0.637447 tig0029039:+80 None:intergenic
AACGGTAGATGGAGGCAGAG+AGG 0.643178 tig0029039:+1220 Msa1440220:CDS
ACAGAGAAAAGCGAAGAACA+AGG 0.643427 tig0029039:+1258 Msa1440220:CDS
TTAAGAGGTGAGGAGAAGTG+TGG 0.657284 tig0029039:+90 Msa1440220:five_prime_UTR
ATATGGATGTCATCCAGTAA+CGG 0.662808 tig0029039:+1202 Msa1440220:CDS
CATCCAGTAACGGTAGATGG+AGG 0.676181 tig0029039:+1212 Msa1440220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATAATGATTATAATA+AGG + tig0029039:121-140 Msa1440220:CDS 10.0%
!! GAAAATAATGATTATAATAA+GGG + tig0029039:122-141 Msa1440220:CDS 10.0%
!! AAAATATCTAAATGTATATT+TGG - tig0029039:409-428 None:intergenic 10.0%
!! TGAAAATAATGATTATAATA+AGG + tig0029039:121-140 Msa1440220:CDS 10.0%
!! GAAAATAATGATTATAATAA+GGG + tig0029039:122-141 Msa1440220:CDS 10.0%
!! AAAATATCTAAATGTATATT+TGG - tig0029039:409-428 None:intergenic 10.0%
!!! TATATCTTAATTTTTCTTCA+TGG + tig0029039:278-297 Msa1440220:intron 15.0%
!! TAAACAAAATGATTTATGTT+TGG + tig0029039:752-771 Msa1440220:intron 15.0%
!! AATACTAACAAAAAAGATTA+GGG - tig0029039:1438-1457 None:intergenic 15.0%
!! AAATACTAACAAAAAAGATT+AGG - tig0029039:1439-1458 None:intergenic 15.0%
!!! ATTTGCTAAAAGTAATAATT+TGG + tig0029039:1455-1474 Msa1440220:three_prime_UTR 15.0%
!!! TATATCTTAATTTTTCTTCA+TGG + tig0029039:278-297 Msa1440220:intron 15.0%
!! TAAACAAAATGATTTATGTT+TGG + tig0029039:752-771 Msa1440220:intron 15.0%
!! AATACTAACAAAAAAGATTA+GGG - tig0029039:1438-1457 None:intergenic 15.0%
!! AAATACTAACAAAAAAGATT+AGG - tig0029039:1439-1458 None:intergenic 15.0%
!!! ATTTGCTAAAAGTAATAATT+TGG + tig0029039:1455-1474 Msa1440220:three_prime_UTR 15.0%
!! TTTACTGTTAGATTAATCAT+TGG + tig0029039:576-595 Msa1440220:intron 20.0%
!! ATTTGATAGAAAGAAAAAAG+TGG - tig0029039:602-621 None:intergenic 20.0%
!! ATAAAGAATGAGAATTGATA+AGG + tig0029039:841-860 Msa1440220:intron 20.0%
!! TAAAGAATGAGAATTGATAA+GGG + tig0029039:842-861 Msa1440220:intron 20.0%
!! ATACTAACAAAAAAGATTAG+GGG - tig0029039:1437-1456 None:intergenic 20.0%
!! TTTACTGTTAGATTAATCAT+TGG + tig0029039:576-595 Msa1440220:intron 20.0%
!! ATTTGATAGAAAGAAAAAAG+TGG - tig0029039:602-621 None:intergenic 20.0%
!! ATAAAGAATGAGAATTGATA+AGG + tig0029039:841-860 Msa1440220:intron 20.0%
!! TAAAGAATGAGAATTGATAA+GGG + tig0029039:842-861 Msa1440220:intron 20.0%
!! ATACTAACAAAAAAGATTAG+GGG - tig0029039:1437-1456 None:intergenic 20.0%
! ATAAATTATACCATGCAATC+AGG - tig0029039:261-280 None:intergenic 25.0%
! TACCAATCTCATTAACTAAA+GGG - tig0029039:329-348 None:intergenic 25.0%
! ATACCAATCTCATTAACTAA+AGG - tig0029039:330-349 None:intergenic 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + tig0029039:708-727 Msa1440220:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG + tig0029039:811-830 Msa1440220:intron 25.0%
! ATTACAACATCACCTTTATA+GGG - tig0029039:1096-1115 None:intergenic 25.0%
! AATTACAACATCACCTTTAT+AGG - tig0029039:1097-1116 None:intergenic 25.0%
!! ATTATTTATCAGGGAACTTT+TGG + tig0029039:1143-1162 Msa1440220:intron 25.0%
!!! TATTTTAGCAAAGGAAATGT+TGG - tig0029039:1383-1402 None:intergenic 25.0%
!!! GCTCTTATTTATTTTAGCAA+AGG - tig0029039:1392-1411 None:intergenic 25.0%
! ATAAATTATACCATGCAATC+AGG - tig0029039:261-280 None:intergenic 25.0%
! TACCAATCTCATTAACTAAA+GGG - tig0029039:329-348 None:intergenic 25.0%
! ATACCAATCTCATTAACTAA+AGG - tig0029039:330-349 None:intergenic 25.0%
!! TGAGAGAATTGATTTATGTT+TGG + tig0029039:708-727 Msa1440220:intron 25.0%
! ACTAAAATAGACATAGCTAA+AGG + tig0029039:811-830 Msa1440220:intron 25.0%
! ATTACAACATCACCTTTATA+GGG - tig0029039:1096-1115 None:intergenic 25.0%
! AATTACAACATCACCTTTAT+AGG - tig0029039:1097-1116 None:intergenic 25.0%
!! ATTATTTATCAGGGAACTTT+TGG + tig0029039:1143-1162 Msa1440220:intron 25.0%
!!! TATTTTAGCAAAGGAAATGT+TGG - tig0029039:1383-1402 None:intergenic 25.0%
!!! GCTCTTATTTATTTTAGCAA+AGG - tig0029039:1392-1411 None:intergenic 25.0%
ATCCCTTTAGTTAATGAGAT+TGG + tig0029039:324-343 Msa1440220:intron 30.0%
ATATTCAAAGCTGAACCAAA+CGG - tig0029039:634-653 None:intergenic 30.0%
GGTTGTTCTCAAAGAAAATA+AGG + tig0029039:1279-1298 Msa1440220:CDS 30.0%
ATCCCTTTAGTTAATGAGAT+TGG + tig0029039:324-343 Msa1440220:intron 30.0%
ATATTCAAAGCTGAACCAAA+CGG - tig0029039:634-653 None:intergenic 30.0%
GGTTGTTCTCAAAGAAAATA+AGG + tig0029039:1279-1298 Msa1440220:CDS 30.0%
ATGATGCAGTAATCATTGCA+TGG + tig0029039:172-191 Msa1440220:CDS 35.0%
TGATGCAGTAATCATTGCAT+GGG + tig0029039:173-192 Msa1440220:CDS 35.0%
TAATGGTGACAAGCCAAATT+TGG + tig0029039:218-237 Msa1440220:CDS 35.0%
TTCTCATCAGCATCCAAATT+TGG - tig0029039:234-253 None:intergenic 35.0%
ACAGTAAAAAAGTGAACAGC+AGG - tig0029039:564-583 None:intergenic 35.0%
! TCAAATTTTATGTGCCCGTT+TGG + tig0029039:616-635 Msa1440220:intron 35.0%
TATTCAAAGCTGAACCAAAC+GGG - tig0029039:633-652 None:intergenic 35.0%
AAACCTATACACGTTGTTCA+AGG + tig0029039:902-921 Msa1440220:intron 35.0%
! ATTCTAGAAAGCTAGAAGCT+AGG + tig0029039:932-951 Msa1440220:intron 35.0%
!! TGAACCAAACACGTTGTTTT+TGG + tig0029039:1009-1028 Msa1440220:intron 35.0%
!! CACTGTAGAGAATTGCTTTT+GGG + tig0029039:1046-1065 Msa1440220:intron 35.0%
!! TTATCAGGGAACTTTTGGAA+CGG + tig0029039:1148-1167 Msa1440220:intron 35.0%
CATTATGCTTATGGTGAGTT+TGG + tig0029039:1176-1195 Msa1440220:CDS 35.0%
ATATGGATGTCATCCAGTAA+CGG + tig0029039:1202-1221 Msa1440220:CDS 35.0%
CTCAAAGAAAATAAGGTACG+AGG + tig0029039:1286-1305 Msa1440220:CDS 35.0%
AGAAAATAAGGTACGAGGTT+AGG + tig0029039:1291-1310 Msa1440220:CDS 35.0%
AGAAGAGACCAAGAATGAAA+GGG + tig0029039:1327-1346 Msa1440220:CDS 35.0%
ACAAATCTCCCTTTCATTCT+TGG - tig0029039:1338-1357 None:intergenic 35.0%
ATGATGCAGTAATCATTGCA+TGG + tig0029039:172-191 Msa1440220:CDS 35.0%
TGATGCAGTAATCATTGCAT+GGG + tig0029039:173-192 Msa1440220:CDS 35.0%
TAATGGTGACAAGCCAAATT+TGG + tig0029039:218-237 Msa1440220:CDS 35.0%
TTCTCATCAGCATCCAAATT+TGG - tig0029039:234-253 None:intergenic 35.0%
ACAGTAAAAAAGTGAACAGC+AGG - tig0029039:564-583 None:intergenic 35.0%
! TCAAATTTTATGTGCCCGTT+TGG + tig0029039:616-635 Msa1440220:intron 35.0%
TATTCAAAGCTGAACCAAAC+GGG - tig0029039:633-652 None:intergenic 35.0%
AAACCTATACACGTTGTTCA+AGG + tig0029039:902-921 Msa1440220:intron 35.0%
! ATTCTAGAAAGCTAGAAGCT+AGG + tig0029039:932-951 Msa1440220:intron 35.0%
!! TGAACCAAACACGTTGTTTT+TGG + tig0029039:1009-1028 Msa1440220:intron 35.0%
!! CACTGTAGAGAATTGCTTTT+GGG + tig0029039:1046-1065 Msa1440220:intron 35.0%
!! TTATCAGGGAACTTTTGGAA+CGG + tig0029039:1148-1167 Msa1440220:intron 35.0%
CATTATGCTTATGGTGAGTT+TGG + tig0029039:1176-1195 Msa1440220:CDS 35.0%
ATATGGATGTCATCCAGTAA+CGG + tig0029039:1202-1221 Msa1440220:CDS 35.0%
CTCAAAGAAAATAAGGTACG+AGG + tig0029039:1286-1305 Msa1440220:CDS 35.0%
AGAAAATAAGGTACGAGGTT+AGG + tig0029039:1291-1310 Msa1440220:CDS 35.0%
AGAAGAGACCAAGAATGAAA+GGG + tig0029039:1327-1346 Msa1440220:CDS 35.0%
ACAAATCTCCCTTTCATTCT+TGG - tig0029039:1338-1357 None:intergenic 35.0%
ATTTGGATGCTGATGAGAAC+TGG + tig0029039:235-254 Msa1440220:CDS 40.0%
CCATGAGTGTGTCAAAATCA+CGG - tig0029039:381-400 None:intergenic 40.0%
CTTTACAACACTTGCACACA+CGG + tig0029039:515-534 Msa1440220:intron 40.0%
TCTCCTTGAACAACGTGTAT+AGG - tig0029039:908-927 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG + tig0029039:948-967 Msa1440220:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG + tig0029039:962-981 Msa1440220:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG + tig0029039:965-984 Msa1440220:intron 40.0%
CTAGCCAAAAACAACGTGTT+TGG - tig0029039:1016-1035 None:intergenic 40.0%
! GCACTGTAGAGAATTGCTTT+TGG + tig0029039:1045-1064 Msa1440220:intron 40.0%
!! TGTAGAGAATTGCTTTTGGG+TGG + tig0029039:1049-1068 Msa1440220:intron 40.0%
GAACCAAACAGACCCTATAA+AGG + tig0029039:1081-1100 Msa1440220:intron 40.0%
TCACCTTTATAGGGTCTGTT+TGG - tig0029039:1087-1106 None:intergenic 40.0%
ACGGAGGTTCATTATGCTTA+TGG + tig0029039:1167-1186 Msa1440220:CDS 40.0%
TATGCTTATGGTGAGTTTGG+TGG + tig0029039:1179-1198 Msa1440220:CDS 40.0%
! TATGGTGAGTTTGGTGGATA+TGG + tig0029039:1185-1204 Msa1440220:CDS 40.0%
ACAGAGAAAAGCGAAGAACA+AGG + tig0029039:1258-1277 Msa1440220:CDS 40.0%
GAGAAGAGACCAAGAATGAA+AGG + tig0029039:1326-1345 Msa1440220:CDS 40.0%
TGAAAGGGAGATTTGTGAAG+AGG + tig0029039:1342-1361 Msa1440220:CDS 40.0%
GAAAGGGAGATTTGTGAAGA+GGG + tig0029039:1343-1362 Msa1440220:CDS 40.0%
AGGAAATGTTGGAACTGCAA+AGG - tig0029039:1372-1391 None:intergenic 40.0%
ATTTGGATGCTGATGAGAAC+TGG + tig0029039:235-254 Msa1440220:CDS 40.0%
CCATGAGTGTGTCAAAATCA+CGG - tig0029039:381-400 None:intergenic 40.0%
CTTTACAACACTTGCACACA+CGG + tig0029039:515-534 Msa1440220:intron 40.0%
TCTCCTTGAACAACGTGTAT+AGG - tig0029039:908-927 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG + tig0029039:948-967 Msa1440220:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG + tig0029039:962-981 Msa1440220:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG + tig0029039:965-984 Msa1440220:intron 40.0%
CTAGCCAAAAACAACGTGTT+TGG - tig0029039:1016-1035 None:intergenic 40.0%
! GCACTGTAGAGAATTGCTTT+TGG + tig0029039:1045-1064 Msa1440220:intron 40.0%
!! TGTAGAGAATTGCTTTTGGG+TGG + tig0029039:1049-1068 Msa1440220:intron 40.0%
GAACCAAACAGACCCTATAA+AGG + tig0029039:1081-1100 Msa1440220:intron 40.0%
TCACCTTTATAGGGTCTGTT+TGG - tig0029039:1087-1106 None:intergenic 40.0%
ACGGAGGTTCATTATGCTTA+TGG + tig0029039:1167-1186 Msa1440220:CDS 40.0%
TATGCTTATGGTGAGTTTGG+TGG + tig0029039:1179-1198 Msa1440220:CDS 40.0%
! TATGGTGAGTTTGGTGGATA+TGG + tig0029039:1185-1204 Msa1440220:CDS 40.0%
ACAGAGAAAAGCGAAGAACA+AGG + tig0029039:1258-1277 Msa1440220:CDS 40.0%
GAGAAGAGACCAAGAATGAA+AGG + tig0029039:1326-1345 Msa1440220:CDS 40.0%
TGAAAGGGAGATTTGTGAAG+AGG + tig0029039:1342-1361 Msa1440220:CDS 40.0%
GAAAGGGAGATTTGTGAAGA+GGG + tig0029039:1343-1362 Msa1440220:CDS 40.0%
AGGAAATGTTGGAACTGCAA+AGG - tig0029039:1372-1391 None:intergenic 40.0%
TTAAGAGGTGAGGAGAAGTG+TGG + tig0029039:90-109 Msa1440220:five_prime_UTR 45.0%
! CATTAGTCCAGGGACACTTT+TGG - tig0029039:203-222 None:intergenic 45.0%
!! CAAAAGTGTCCCTGGACTAA+TGG + tig0029039:201-220 Msa1440220:CDS 45.0%
!! CCGTGATTTTGACACACTCA+TGG + tig0029039:378-397 Msa1440220:intron 45.0%
GCAGGTCTAACACAAGTGAA+TGG - tig0029039:546-565 None:intergenic 45.0%
TGTCATCCAGTAACGGTAGA+TGG + tig0029039:1209-1228 Msa1440220:CDS 45.0%
TTAAGAGGTGAGGAGAAGTG+TGG + tig0029039:90-109 Msa1440220:five_prime_UTR 45.0%
! CATTAGTCCAGGGACACTTT+TGG - tig0029039:203-222 None:intergenic 45.0%
!! CAAAAGTGTCCCTGGACTAA+TGG + tig0029039:201-220 Msa1440220:CDS 45.0%
!! CCGTGATTTTGACACACTCA+TGG + tig0029039:378-397 Msa1440220:intron 45.0%
GCAGGTCTAACACAAGTGAA+TGG - tig0029039:546-565 None:intergenic 45.0%
TGTCATCCAGTAACGGTAGA+TGG + tig0029039:1209-1228 Msa1440220:CDS 45.0%
!!! TTTTAATTTAATTATTTATC+AGG + tig0029039:1133-1152 Msa1440220:intron 5.0%
!!! TTTAATTTAATTATTTATCA+GGG + tig0029039:1134-1153 Msa1440220:intron 5.0%
!!! TTTTAATTTAATTATTTATC+AGG + tig0029039:1133-1152 Msa1440220:intron 5.0%
!!! TTTAATTTAATTATTTATCA+GGG + tig0029039:1134-1153 Msa1440220:intron 5.0%
GGCTTGTCACCATTAGTCCA+GGG - tig0029039:213-232 None:intergenic 50.0%
! TGGCTTGTCACCATTAGTCC+AGG - tig0029039:214-233 None:intergenic 50.0%
! TGAGAACTGGCCTGATTGCA+TGG + tig0029039:248-267 Msa1440220:CDS 50.0%
!!! TCAGGGAACTTTTGGAACGG+AGG + tig0029039:1151-1170 Msa1440220:intron 50.0%
CATCCAGTAACGGTAGATGG+AGG + tig0029039:1212-1231 Msa1440220:CDS 50.0%
GGCTTGTCACCATTAGTCCA+GGG - tig0029039:213-232 None:intergenic 50.0%
! TGGCTTGTCACCATTAGTCC+AGG - tig0029039:214-233 None:intergenic 50.0%
! TGAGAACTGGCCTGATTGCA+TGG + tig0029039:248-267 Msa1440220:CDS 50.0%
!!! TCAGGGAACTTTTGGAACGG+AGG + tig0029039:1151-1170 Msa1440220:intron 50.0%
CATCCAGTAACGGTAGATGG+AGG + tig0029039:1212-1231 Msa1440220:CDS 50.0%
!! GGGATAGCCAAAAGTGTCCC+TGG + tig0029039:193-212 Msa1440220:CDS 55.0%
CTGCCTCCATCTACCGTTAC+TGG - tig0029039:1218-1237 None:intergenic 55.0%
AACGGTAGATGGAGGCAGAG+AGG + tig0029039:1220-1239 Msa1440220:CDS 55.0%
TAGATGGAGGCAGAGAGGCA+AGG + tig0029039:1225-1244 Msa1440220:CDS 55.0%
AGATGGAGGCAGAGAGGCAA+GGG + tig0029039:1226-1245 Msa1440220:CDS 55.0%
GCAGAGAGGCAAGGGTTTCA+AGG + tig0029039:1234-1253 Msa1440220:CDS 55.0%
!! GGGATAGCCAAAAGTGTCCC+TGG + tig0029039:193-212 Msa1440220:CDS 55.0%
CTGCCTCCATCTACCGTTAC+TGG - tig0029039:1218-1237 None:intergenic 55.0%
AACGGTAGATGGAGGCAGAG+AGG + tig0029039:1220-1239 Msa1440220:CDS 55.0%
TAGATGGAGGCAGAGAGGCA+AGG + tig0029039:1225-1244 Msa1440220:CDS 55.0%
AGATGGAGGCAGAGAGGCAA+GGG + tig0029039:1226-1245 Msa1440220:CDS 55.0%
GCAGAGAGGCAAGGGTTTCA+AGG + tig0029039:1234-1253 Msa1440220:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0029039 gene 84 1505 84 ID=Msa1440220;Name=Msa1440220
tig0029039 mRNA 84 1505 84 ID=Msa1440220-mRNA-1;Parent=Msa1440220;Name=Msa1440220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=36|1|1|1|1|1|2|102|132
tig0029039 exon 84 269 84 ID=Msa1440220-mRNA-1:exon:12162;Parent=Msa1440220-mRNA-1
tig0029039 exon 1155 1505 1155 ID=Msa1440220-mRNA-1:exon:12163;Parent=Msa1440220-mRNA-1
tig0029039 five_prime_UTR 84 119 84 ID=Msa1440220-mRNA-1:five_prime_utr;Parent=Msa1440220-mRNA-1
tig0029039 CDS 120 269 120 ID=Msa1440220-mRNA-1:cds;Parent=Msa1440220-mRNA-1
tig0029039 CDS 1155 1403 1155 ID=Msa1440220-mRNA-1:cds;Parent=Msa1440220-mRNA-1
tig0029039 three_prime_UTR 1404 1505 1404 ID=Msa1440220-mRNA-1:three_prime_utr;Parent=Msa1440220-mRNA-1
Gene Sequence

>Msa1440220

ATGAAAATAATGATTATAATAAGGGAAAAGAAAAATTCTTTGCAGCTAGATTATGATGCAGTAATCATTGCATGGGATAGCCAAAAGTGTCCCTGGACTAATGGTGACAAGCCAAATTTGGATGCTGATGAGAACTGGCCTGATTGCATGGGAACTTTTGGAACGGAGGTTCATTATGCTTATGGTGAGTTTGGTGGATATGGATGTCATCCAGTAACGGTAGATGGAGGCAGAGAGGCAAGGGTTTCAAGGTACAGAGAAAAGCGAAGAACAAGGTTGTTCTCAAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCAAGAATGAAAGGGAGATTTGTGAAGAGGGCTTCCTTTGCAGTTCCAACATTTCCTTTGCTAAAATAA

Protein sequence

>Msa1440220

MKIMIIIREKKNSLQLDYDAVIIAWDSQKCPWTNGDKPNLDADENWPDCMGTFGTEVHYAYGEFGGYGCHPVTVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK*