AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1293050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293050 MtrunA17_Chr8g0368511 92.105 114 7 1 1 112 1 114 9.88e-73 214
Msa1293050 MtrunA17_Chr8g0368511 91.304 69 6 0 107 175 46 114 7.15e-39 128
Msa1293050 MtrunA17_Chr7g0222601 59.649 57 23 0 47 103 15 71 4.68e-22 85.5
Msa1293050 MtrunA17_Chr7g0222601 58.491 53 22 0 114 166 19 71 1.02e-19 79.3
Msa1293050 MtrunA17_Chr7g0263161 45.783 83 44 1 46 128 7 88 1.10e-21 84.0
Msa1293050 MtrunA17_Chr7g0263161 47.945 73 35 1 106 175 1 73 4.80e-19 77.4
Msa1293050 MtrunA17_Chr1g0212831 57.143 56 24 0 46 101 9 64 1.77e-19 79.0
Msa1293050 MtrunA17_Chr1g0212831 54.237 59 24 1 109 164 6 64 2.74e-17 73.2
Msa1293050 MtrunA17_Chr8g0347131 50.000 54 27 0 48 101 55 108 2.20e-12 63.9
Msa1293050 MtrunA17_Chr8g0347131 50.980 51 25 0 114 164 58 108 1.48e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293050 AT1G10657.2 55.172 87 38 1 25 111 1 86 2.57e-30 107
Msa1293050 AT1G10657.2 52.941 68 31 1 107 174 20 86 8.52e-20 80.1
Msa1293050 AT1G10657.3 55.172 87 38 1 25 111 1 86 2.69e-30 106
Msa1293050 AT1G10657.3 52.941 68 31 1 107 174 20 86 9.34e-20 79.7
Msa1293050 AT1G10657.1 43.243 111 38 2 25 111 1 110 8.87e-25 93.6
Msa1293050 AT1G10657.1 39.130 92 31 2 107 174 20 110 2.89e-14 66.2
Msa1293050 AT1G10657.4 43.243 111 38 2 25 111 1 110 1.03e-24 93.2
Msa1293050 AT1G10657.4 39.130 92 31 2 107 174 20 110 3.53e-14 65.9
Msa1293050 AT3G55240.1 62.500 56 21 0 46 101 8 63 3.33e-23 88.6
Msa1293050 AT3G55240.1 55.738 61 24 1 107 164 3 63 1.27e-20 82.0
Msa1293050 AT3G28990.1 41.667 84 43 1 41 118 3 86 1.02e-19 79.3
Msa1293050 AT3G28990.1 46.774 62 33 0 114 175 13 74 5.82e-17 72.4
Msa1293050 AT5G02580.1 45.122 82 41 2 46 123 10 91 1.01e-18 77.0
Msa1293050 AT5G02580.1 51.852 54 26 0 114 167 15 68 1.57e-15 68.6
Msa1293050 AT5G02580.3 44.156 77 39 2 51 123 8 84 4.97e-16 69.7
Msa1293050 AT5G02580.3 54.902 51 23 0 114 164 8 58 2.81e-15 67.8
Msa1293050 AT2G46420.3 53.704 54 25 0 48 101 52 105 1.41e-12 65.1
Msa1293050 AT2G46420.3 38.554 83 51 0 82 164 23 105 3.71e-12 63.9
Msa1293050 AT2G46420.1 53.704 54 25 0 48 101 52 105 1.41e-12 65.1
Msa1293050 AT2G46420.1 38.554 83 51 0 82 164 23 105 3.71e-12 63.9
Msa1293050 AT2G46420.2 53.704 54 25 0 48 101 52 105 1.44e-12 65.1
Msa1293050 AT2G46420.2 38.554 83 51 0 82 164 23 105 3.46e-12 63.9
Msa1293050 AT3G61700.4 50.000 54 27 0 48 101 53 106 7.70e-12 62.8
Msa1293050 AT3G61700.4 50.980 51 25 0 114 164 56 106 5.00e-11 60.5
Msa1293050 AT3G61700.2 50.000 54 27 0 48 101 55 108 8.22e-12 62.8
Msa1293050 AT3G61700.2 50.980 51 25 0 114 164 58 108 5.32e-11 60.5
Msa1293050 AT3G61700.1 50.000 54 27 0 48 101 55 108 8.77e-12 62.8
Msa1293050 AT3G61700.1 50.980 51 25 0 114 164 58 108 5.75e-11 60.5
Msa1293050 AT3G61700.3 50.000 54 27 0 48 101 55 108 8.77e-12 62.8
Msa1293050 AT3G61700.3 50.980 51 25 0 114 164 58 108 5.75e-11 60.5
Msa1293050 AT5G04090.2 50.000 54 27 0 48 101 14 67 1.37e-11 62.0
Msa1293050 AT3G10250.3 50.000 54 27 0 48 101 14 67 1.40e-11 62.0
Msa1293050 AT5G04090.6 50.000 54 27 0 48 101 31 84 1.53e-11 62.0
Msa1293050 AT5G04090.6 37.931 87 37 2 78 164 15 84 7.03e-11 60.1
Msa1293050 AT3G10250.2 50.000 54 27 0 48 101 14 67 1.62e-11 62.0
Msa1293050 AT3G10250.5 50.000 54 27 0 48 101 14 67 1.62e-11 62.0
Msa1293050 AT3G10250.1 50.000 54 27 0 48 101 14 67 1.62e-11 62.0
Msa1293050 AT3G10250.4 50.000 54 27 0 48 101 14 67 1.62e-11 62.0

Find 52 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGATTTCATGAGCTATTT+TGG 0.125606 8_3:-49953501 Msa1293050:five_prime_UTR
CAGCCACTTGTTACTCTTAC+AGG 0.198423 8_3:-49950482 Msa1293050:intron
CAGCCACTTGTTACTCTTAC+AGG 0.198423 8_3:-49953009 Msa1293050:intron
ATCCATCTTTAATAACTAAT+AGG 0.224062 8_3:+49949941 None:intergenic
ACGGCATTGGTTGTAACTTT+TGG 0.279024 8_3:-49949707 Msa1293050:three_prime_UTR
TATCATGGTGATTGATTAGA+TGG 0.281103 8_3:-49949872 Msa1293050:three_prime_UTR
GTGCTTAATTCTGTTGCTAA+TGG 0.321815 8_3:+49953330 None:intergenic
TCCATCTTTAATAACTAATA+GGG 0.332977 8_3:+49949942 None:intergenic
ATCACTATATATATGCATTA+TGG 0.376569 8_3:+49949799 None:intergenic
CTTCTAGTGCCTTTATGCAT+TGG 0.385653 8_3:+49950519 None:intergenic
CTTCTAGTGCCTTTATGCAT+TGG 0.385653 8_3:+49953046 None:intergenic
GATGAGGTAAATCTATCCTT+TGG 0.389875 8_3:-49953520 None:intergenic
TCCCTATTAGTTATTAAAGA+TGG 0.407559 8_3:-49949943 Msa1293050:three_prime_UTR
GAAGTTGTATATGATTTGTT+TGG 0.409684 8_3:-49949847 Msa1293050:three_prime_UTR
AGATCATGCATCTCTCTATC+AGG 0.411660 8_3:+49953085 None:intergenic
TTTACGTACGTGAACGAGCT+TGG 0.432955 8_3:+49950300 None:intergenic
TTTACGTACGTGAACGAGCT+TGG 0.432955 8_3:+49952825 None:intergenic
AAAGTTAAAGTTGTACCATA+TGG 0.440254 8_3:-49949731 Msa1293050:three_prime_UTR
GTCGATTGAGGACTTATACT+TGG 0.452838 8_3:+49949684 None:intergenic
ACAACCAATGCCGTGCCATA+TGG 0.455124 8_3:+49949716 None:intergenic
ATTATGGTCACAAAGTCTAA+TGG 0.468284 8_3:+49949815 None:intergenic
ACAAACAAGGAAGAGGGTAT+TGG 0.476829 8_3:+49953289 None:intergenic
TAGTTATTAAAGATGGATGA+AGG 0.477122 8_3:-49949936 Msa1293050:three_prime_UTR
GAGTCAAGACCAATGCATAA+AGG 0.483045 8_3:-49950528 Msa1293050:CDS
GAGTCAAGACCAATGCATAA+AGG 0.483045 8_3:-49953055 Msa1293050:CDS
TGTTGTGTTAAATATTATCA+TGG 0.487165 8_3:-49949887 Msa1293050:three_prime_UTR
CGTACGTGAACGAGCTTGGA+GGG 0.493662 8_3:+49950304 None:intergenic
CGTACGTGAACGAGCTTGGA+GGG 0.493662 8_3:+49952829 None:intergenic
CTTCATCCATCCATCTCACT+TGG 0.512572 8_3:+49949970 None:intergenic
TGTACCATATGGCACGGCAT+TGG 0.522135 8_3:-49949720 Msa1293050:three_prime_UTR
TCCACATAGCTATATTAGAA+TGG 0.532785 8_3:-49953259 Msa1293050:intron
ACGTACGTGAACGAGCTTGG+AGG 0.547000 8_3:+49950303 None:intergenic
ACGTACGTGAACGAGCTTGG+AGG 0.547000 8_3:+49952828 None:intergenic
TGACAATACAAACAAGGAAG+AGG 0.554518 8_3:+49953282 None:intergenic
TATATCATTATCTAGAGTGA+AGG 0.560952 8_3:+49953477 None:intergenic
AGTGTGGAGGGAGTTGCAAA+AGG 0.569445 8_3:-49950367 Msa1293050:CDS
AAGGCACTAGAAGAACATGC+AGG 0.583674 8_3:-49950509 Msa1293050:CDS
AAGGCACTAGAAGAACATGC+AGG 0.583674 8_3:-49953036 Msa1293050:CDS
ATATCATTATCTAGAGTGAA+GGG 0.597837 8_3:+49953478 None:intergenic
AGTGTGGAGAGAGTTGCAAA+AGG 0.597912 8_3:-49952892 Msa1293050:CDS
AAATGATCAACCAAGTGAGA+TGG 0.602265 8_3:-49949980 Msa1293050:three_prime_UTR
GACAATACAAACAAGGAAGA+GGG 0.614485 8_3:+49953283 None:intergenic
AAATAGCTCATGAAATCCAA+AGG 0.624632 8_3:+49953504 None:intergenic
AGGCACTAGAAGAACATGCA+GGG 0.629832 8_3:-49950508 Msa1293050:CDS
AGGCACTAGAAGAACATGCA+GGG 0.629832 8_3:-49953035 Msa1293050:CDS
GATCAACCAAGTGAGATGGA+TGG 0.630795 8_3:-49949976 Msa1293050:three_prime_UTR
GATAATGATATATATATGTG+TGG 0.633681 8_3:-49953466 Msa1293050:five_prime_UTR
TAAAGTTGTACCATATGGCA+CGG 0.637689 8_3:-49949726 Msa1293050:three_prime_UTR
ACCATTCTAATATAGCTATG+TGG 0.637830 8_3:+49953258 None:intergenic
AGACCTGTAAGAGTAACAAG+TGG 0.663372 8_3:+49953006 None:intergenic
AGACCTGTAAGAGTAACAAG+TGG 0.670192 8_3:+49950479 None:intergenic
TGTGGATGACAATACAAACA+AGG 0.679966 8_3:+49953276 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATATACATAGATTAA+TGG + chr8_3:49950511-49950530 None:intergenic 10.0%
!! AATTTAAACAGTAAAAAAAA+AGG + chr8_3:49951488-49951507 None:intergenic 10.0%
!!! TTTATTTAGTTTAAAAATGA+AGG + chr8_3:49951597-49951616 None:intergenic 10.0%
!! TTATTATGATATTGAAAACA+AGG + chr8_3:49950061-49950080 None:intergenic 15.0%
!!! AAATTCCATATATATTTTCA+AGG - chr8_3:49950410-49950429 Msa1293050:intron 15.0%
!!! GGTATTTTTTAAAAATCAAT+AGG + chr8_3:49950558-49950577 None:intergenic 15.0%
!!! TCTTATTTTATTTACTTTTC+AGG - chr8_3:49950717-49950736 Msa1293050:intron 15.0%
!!! TAGTTTTTAAATATTTGATG+TGG - chr8_3:49950925-49950944 Msa1293050:intron 15.0%
!!! AATTTTTAAAGTTAAAGTTG+AGG - chr8_3:49951066-49951085 Msa1293050:intron 15.0%
!!! TATTTCTGATAATAAGAATA+TGG - chr8_3:49951679-49951698 Msa1293050:intron 15.0%
!! TCACACATTATATAATTATA+TGG - chr8_3:49952179-49952198 Msa1293050:intron 15.0%
!! TTATTATGATATTGAAAACA+AGG + chr8_3:49950061-49950080 None:intergenic 15.0%
!!! AAATTCCATATATATTTTCA+AGG - chr8_3:49950410-49950429 Msa1293050:intron 15.0%
!! TAATAAACTAAATTATATGC+AGG - chr8_3:49952989-49953008 Msa1293050:intron 15.0%
!! GATAATGATATATATATGTG+TGG - chr8_3:49949740-49949759 Msa1293050:three_prime_UTR 20.0%
!! ACTAAATTATAAGGAAGAAA+AGG - chr8_3:49950475-49950494 Msa1293050:intron 20.0%
!!! TATGTATGATATTTTGCTTT+TGG + chr8_3:49950587-49950606 None:intergenic 20.0%
!! TGTTGTGTTAAATATTATCA+TGG - chr8_3:49950800-49950819 Msa1293050:intron 20.0%
!! CACTATATATATATGCATTA+TGG + chr8_3:49950891-49950910 None:intergenic 20.0%
!!! AAGCAAATTATCATTCATTT+TGG + chr8_3:49951201-49951220 None:intergenic 20.0%
!! AAGGATAATTTAAACAAATG+AGG + chr8_3:49951469-49951488 None:intergenic 20.0%
!! TATGTTTGTAATAAAGTGAT+AGG + chr8_3:49951520-49951539 None:intergenic 20.0%
!! CTTTATGATAAATGTTATGA+TGG - chr8_3:49951975-49951994 Msa1293050:intron 20.0%
!! GCTAATTATACATAGATTAA+TGG + chr8_3:49953032-49953051 None:intergenic 20.0%
!! ATGCATATTGCATTAATTAA+AGG + chr8_3:49953054-49953073 None:intergenic 20.0%
!!! TGTATGATATATTTTGCTTT+TGG + chr8_3:49953106-49953125 None:intergenic 20.0%
!! TCCATCTTTAATAACTAATA+GGG + chr8_3:49953267-49953286 None:intergenic 20.0%
!! ATCCATCTTTAATAACTAAT+AGG + chr8_3:49953268-49953287 None:intergenic 20.0%
!! TGTTGTGTTAAATATTATCA+TGG - chr8_3:49950800-49950819 Msa1293050:intron 20.0%
!! ATCACTATATATATGCATTA+TGG + chr8_3:49953410-49953429 None:intergenic 20.0%
!! ATATCATTATCTAGAGTGAA+GGG + chr8_3:49949731-49949750 None:intergenic 25.0%
!! TATATCATTATCTAGAGTGA+AGG + chr8_3:49949732-49949751 None:intergenic 25.0%
! TTGAAACTTATGTTACACTT+TGG - chr8_3:49950248-49950267 Msa1293050:intron 25.0%
! TGAAACTTATGTTACACTTT+GGG - chr8_3:49950249-49950268 Msa1293050:intron 25.0%
! CTGATCCTTGAAAATATATA+TGG + chr8_3:49950418-49950437 None:intergenic 25.0%
! TATGCTTTGCATATCATTAA+AGG + chr8_3:49950444-49950463 None:intergenic 25.0%
! ATGCATATAGCATTAGTTAA+TGG + chr8_3:49950535-49950554 None:intergenic 25.0%
!!! GTCATTTTGAAAAGAAACAT+TGG - chr8_3:49950742-49950761 Msa1293050:intron 25.0%
! TATCATGGTAATTGATTAGA+TGG - chr8_3:49950815-49950834 Msa1293050:intron 25.0%
!!! GAAGTTGTATATGATTTGTT+TGG - chr8_3:49950840-49950859 Msa1293050:intron 25.0%
!!! ATGGTATTGGTTATAACTTT+TGG - chr8_3:49950983-49951002 Msa1293050:intron 25.0%
! AAAAGTTCAATAGAAGGAAT+TGG + chr8_3:49951573-49951592 None:intergenic 25.0%
! GAACAATACATAAATGTGTT+TGG + chr8_3:49951650-49951669 None:intergenic 25.0%
!! ATATGTCAGTTAATTTGAGA+TGG + chr8_3:49951723-49951742 None:intergenic 25.0%
!! AAATGAATTTTCCAACTTTG+TGG - chr8_3:49951836-49951855 Msa1293050:intron 25.0%
! TATGATAAATGTTATGATGG+AGG - chr8_3:49951978-49951997 Msa1293050:intron 25.0%
!!! AAGCTTTTAAAGCTCTAATA+AGG + chr8_3:49952047-49952066 None:intergenic 25.0%
! ATATAATGTGTGAGTGATAA+GGG + chr8_3:49952172-49952191 None:intergenic 25.0%
! TATATAATGTGTGAGTGATA+AGG + chr8_3:49952173-49952192 None:intergenic 25.0%
! GTGCTTAATTATATTGCTAA+TGG + chr8_3:49952402-49952421 None:intergenic 25.0%
! TTGAAACTTATGTTACACTT+TGG - chr8_3:49950248-49950267 Msa1293050:intron 25.0%
! TGAAACTTATGTTACACTTT+GGG - chr8_3:49950249-49950268 Msa1293050:intron 25.0%
! CTGATCCTTGAAAATATATA+TGG + chr8_3:49950418-49950437 None:intergenic 25.0%
!!! TCTTACTTGAATTACTTTTC+AGG - chr8_3:49953178-49953197 Msa1293050:intron 25.0%
!!! GTCATTTTGAAAAGAAACAT+TGG - chr8_3:49950742-49950761 Msa1293050:intron 25.0%
! TCCCTATTAGTTATTAAAGA+TGG - chr8_3:49953263-49953282 Msa1293050:CDS 25.0%
! TAGTTATTAAAGATGGATGA+AGG - chr8_3:49953270-49953289 Msa1293050:CDS 25.0%
!!! GAAGTTGTATATGATTTGTT+TGG - chr8_3:49950840-49950859 Msa1293050:intron 25.0%
! AAAGTTAAAGTTGTACCATA+TGG - chr8_3:49953475-49953494 Msa1293050:five_prime_UTR 25.0%
AAATAGCTCATGAAATCCAA+AGG + chr8_3:49949705-49949724 None:intergenic 30.0%
! TTGGATTTCATGAGCTATTT+TGG - chr8_3:49949705-49949724 Msa1293050:three_prime_UTR 30.0%
TCCACATAGCTATATTAGAA+TGG - chr8_3:49949947-49949966 Msa1293050:three_prime_UTR 30.0%
ACCATTCTAATATAGCTATG+TGG + chr8_3:49949951-49949970 None:intergenic 30.0%
! TTTTCCATGCATGAAAGTTT+TGG + chr8_3:49950087-49950106 None:intergenic 30.0%
TTTCATGCATGGAAAAATGT+AGG - chr8_3:49950091-49950110 Msa1293050:intron 30.0%
! TACACTTTGGGAAACATATA+TGG - chr8_3:49950261-49950280 Msa1293050:intron 30.0%
! TGTATATTCATTTTGCAGTG+TGG - chr8_3:49950298-49950317 Msa1293050:intron 30.0%
!! ATATTTTGCTTTTGGACAGT+TGG + chr8_3:49950579-49950598 None:intergenic 30.0%
AAATGATCAACAAAGTGAGA+TGG - chr8_3:49950765-49950784 Msa1293050:intron 30.0%
ATTATGGTCACAAAGTCTAA+TGG + chr8_3:49950875-49950894 None:intergenic 30.0%
ATTGTAAATGAAGCTGTCAT+TGG - chr8_3:49951125-49951144 Msa1293050:intron 30.0%
!!! CATTCATTTTGGTTCATGTA+TGG + chr8_3:49951190-49951209 None:intergenic 30.0%
GTAATAAAGTGATAGGTGTT+AGG + chr8_3:49951513-49951532 None:intergenic 30.0%
! TTGGAAAGTTATGGTTAGTT+AGG + chr8_3:49951554-49951573 None:intergenic 30.0%
TAGAAGGAATTGGAAAGTTA+TGG + chr8_3:49951563-49951582 None:intergenic 30.0%
GAAGGAAAAAGTTCAATAGA+AGG + chr8_3:49951579-49951598 None:intergenic 30.0%
CTTTCTAATAGCAAATGAGT+TGG - chr8_3:49951810-49951829 Msa1293050:intron 30.0%
!! TTTTCTCTTCTTGATAGTTG+CGG - chr8_3:49951942-49951961 Msa1293050:intron 30.0%
CTTATAACCAGTAAAAATGC+CGG + chr8_3:49952004-49952023 None:intergenic 30.0%
! TTCTTATCTCTTTGAAGATG+AGG - chr8_3:49952217-49952236 Msa1293050:intron 30.0%
GTTGTGTTAATGAAATCCAA+AGG + chr8_3:49952252-49952271 None:intergenic 30.0%
TCCACATAGCTATATTAGAA+TGG - chr8_3:49949947-49949966 Msa1293050:three_prime_UTR 30.0%
ACCATTCTAATATAGCTATG+TGG + chr8_3:49949951-49949970 None:intergenic 30.0%
! TTTTCCATGCATGAAAGTTT+TGG + chr8_3:49950087-49950106 None:intergenic 30.0%
! TACACTTTGGGAAACATATA+TGG - chr8_3:49950261-49950280 Msa1293050:intron 30.0%
! TGTATATTCATTTTGCAGTG+TGG - chr8_3:49950298-49950317 Msa1293050:intron 30.0%
TATGCTTTGCACATGATTAA+AGG + chr8_3:49952969-49952988 None:intergenic 30.0%
!! ATATTTTGCTTTTGGACAGT+TGG + chr8_3:49950579-49950598 None:intergenic 30.0%
TATCATGGTGATTGATTAGA+TGG - chr8_3:49953334-49953353 Msa1293050:CDS 30.0%
ATTATGGTCACAAAGTCTAA+TGG + chr8_3:49950875-49950894 None:intergenic 30.0%
GTGCTTAATTCTGTTGCTAA+TGG + chr8_3:49949879-49949898 None:intergenic 35.0%
GACAATACAAACAAGGAAGA+GGG + chr8_3:49949926-49949945 None:intergenic 35.0%
TGACAATACAAACAAGGAAG+AGG + chr8_3:49949927-49949946 None:intergenic 35.0%
TGTGGATGACAATACAAACA+AGG + chr8_3:49949933-49949952 None:intergenic 35.0%
CAAAGTTGTACGATATGACA+TGG - chr8_3:49950964-49950983 Msa1293050:intron 35.0%
TGTACGATATGACATGGTAT+TGG - chr8_3:49950970-49950989 Msa1293050:intron 35.0%
!! TGAATCACTTTTGTCGATTG+AGG + chr8_3:49951021-49951040 None:intergenic 35.0%
AAATAGCCTCACATAGTGTT+AGG - chr8_3:49951364-49951383 Msa1293050:intron 35.0%
! GTCAGTTAATTTGAGATGGT+GGG + chr8_3:49951719-49951738 None:intergenic 35.0%
! TGTCAGTTAATTTGAGATGG+TGG + chr8_3:49951720-49951739 None:intergenic 35.0%
TCAAGAAGAGAAAAGGTGAA+AGG + chr8_3:49951936-49951955 None:intergenic 35.0%
GCAACTATCAAGAAGAGAAA+AGG + chr8_3:49951943-49951962 None:intergenic 35.0%
! ATAAATGTTATGATGGAGGC+CGG - chr8_3:49951982-49952001 Msa1293050:intron 35.0%
!! CGGCATTTTTACTGGTTATA+AGG - chr8_3:49952002-49952021 Msa1293050:intron 35.0%
! AGCTTTGCATATCCTTTTTG+AGG - chr8_3:49952062-49952081 Msa1293050:intron 35.0%
! TTCCATAAGAGCATGTTAGT+CGG - chr8_3:49952108-49952127 Msa1293050:intron 35.0%
CTTCAAAGAGATAAGAAGAG+TGG + chr8_3:49952214-49952233 None:intergenic 35.0%
GATGAGGTAAATCTATCCTT+TGG - chr8_3:49952233-49952252 Msa1293050:intron 35.0%
GACAATACAAACAAGGAAGA+GGG + chr8_3:49949926-49949945 None:intergenic 35.0%
TGACAATACAAACAAGGAAG+AGG + chr8_3:49949927-49949946 None:intergenic 35.0%
TGTGGATGACAATACAAACA+AGG + chr8_3:49949933-49949952 None:intergenic 35.0%
CTTTCATGCATGGAAAATGT+AGG - chr8_3:49952618-49952637 Msa1293050:intron 35.0%
! ATATTCATTTTGCAGTGTGG+AGG - chr8_3:49950301-49950320 Msa1293050:intron 35.0%
! TATTCATTTTGCAGTGTGGA+GGG - chr8_3:49950302-49950321 Msa1293050:intron 35.0%
AAATGATCAACCAAGTGAGA+TGG - chr8_3:49953226-49953245 Msa1293050:intron 35.0%
TAAAGTTGTACCATATGGCA+CGG - chr8_3:49953480-49953499 Msa1293050:five_prime_UTR 35.0%
! ACAAACAAGGAAGAGGGTAT+TGG + chr8_3:49949920-49949939 None:intergenic 40.0%
AGCTCCAAAACTTTCATGCA+TGG - chr8_3:49950080-49950099 Msa1293050:intron 40.0%
AGATCATGCATCTCTCTATC+AGG + chr8_3:49950124-49950143 None:intergenic 40.0%
GAGTCAAGACCAATGCATAA+AGG - chr8_3:49950151-49950170 Msa1293050:intron 40.0%
CTTCTAGTGCCTTTATGCAT+TGG + chr8_3:49950163-49950182 None:intergenic 40.0%
AGACCTGTAAGAGTAACAAG+TGG + chr8_3:49950203-49950222 None:intergenic 40.0%
TCTCTCTTAACAACTTGCAC+TGG - chr8_3:49951240-49951259 Msa1293050:intron 40.0%
GGGGATCACATGATGTTTAT+TGG + chr8_3:49951308-49951327 None:intergenic 40.0%
!! TTTTTAGCACACCAGTCTTG+GGG + chr8_3:49951327-49951346 None:intergenic 40.0%
!!! GTTTTTAGCACACCAGTCTT+GGG + chr8_3:49951328-49951347 None:intergenic 40.0%
!!! TGTTTTTAGCACACCAGTCT+TGG + chr8_3:49951329-49951348 None:intergenic 40.0%
TTCACTCCTAACACTATGTG+AGG + chr8_3:49951373-49951392 None:intergenic 40.0%
TTTGTGGCGCAAGTAGATTA+TGG - chr8_3:49951852-49951871 Msa1293050:intron 40.0%
TATAAGGTCAGTCGATCAGA+CGG - chr8_3:49952018-49952037 Msa1293050:intron 40.0%
! ACAAACAAGGAAGAGGGTAT+TGG + chr8_3:49949920-49949939 None:intergenic 40.0%
AGCTCCAAAACTTTCATGCA+TGG - chr8_3:49950080-49950099 Msa1293050:intron 40.0%
GAGTCAAGACCAATGCATAA+AGG - chr8_3:49950151-49950170 Msa1293050:intron 40.0%
CTTCTAGTGCCTTTATGCAT+TGG + chr8_3:49950163-49950182 None:intergenic 40.0%
AGACCTGTAAGAGTAACAAG+TGG + chr8_3:49950203-49950222 None:intergenic 40.0%
!!! ACGGCATTGGTTGTAACTTT+TGG - chr8_3:49953499-49953518 Msa1293050:five_prime_UTR 40.0%
! AAGGCACTAGAAGAACATGC+AGG - chr8_3:49950170-49950189 Msa1293050:intron 45.0%
AGGCACTAGAAGAACATGCA+GGG - chr8_3:49950171-49950190 Msa1293050:intron 45.0%
! CAGCCACTTGTTACTCTTAC+AGG - chr8_3:49950197-49950216 Msa1293050:intron 45.0%
AGTGTGGAGAGAGTTGCAAA+AGG - chr8_3:49950314-49950333 Msa1293050:CDS 45.0%
TTTACGTACGTGAACGAGCT+TGG + chr8_3:49950384-49950403 None:intergenic 45.0%
GTCGATTGAGGACTTACACT+TGG + chr8_3:49951009-49951028 None:intergenic 45.0%
ATCTACTTGCGCCACAAAGT+TGG + chr8_3:49951850-49951869 None:intergenic 45.0%
ATAAGGTCAGTCGATCAGAC+GGG - chr8_3:49952019-49952038 Msa1293050:intron 45.0%
!!! TATCCTTTTTGAGGCGTCGT+CGG - chr8_3:49952071-49952090 Msa1293050:intron 45.0%
! CACCGACTAACATGCTCTTA+TGG + chr8_3:49952113-49952132 None:intergenic 45.0%
! AAGGCACTAGAAGAACATGC+AGG - chr8_3:49950170-49950189 Msa1293050:intron 45.0%
AGGCACTAGAAGAACATGCA+GGG - chr8_3:49950171-49950190 Msa1293050:intron 45.0%
! CAGCCACTTGTTACTCTTAC+AGG - chr8_3:49950197-49950216 Msa1293050:intron 45.0%
TTTACGTACGTGAACGAGCT+TGG + chr8_3:49950384-49950403 None:intergenic 45.0%
GATCAACCAAGTGAGATGGA+TGG - chr8_3:49953230-49953249 Msa1293050:intron 45.0%
CTTCATCCATCCATCTCACT+TGG + chr8_3:49953239-49953258 None:intergenic 45.0%
!!! TAAAGAATATTATTATTTTA+TGG - chr8_3:49950026-49950045 Msa1293050:intron 5.0%
!! ATAAATTTAACTAAATTATA+AGG - chr8_3:49950466-49950485 Msa1293050:intron 5.0%
!! AGAATATTATTATTATTATA+TGG - chr8_3:49952554-49952573 Msa1293050:intron 5.0%
CATCATGTGATCCCCAAGAC+TGG - chr8_3:49951313-49951332 Msa1293050:intron 50.0%
! ATGGAGGCCGGCATTTTTAC+TGG - chr8_3:49951994-49952013 Msa1293050:intron 50.0%
TAAGGTCAGTCGATCAGACG+GGG - chr8_3:49952020-49952039 Msa1293050:intron 50.0%
!!! ATCCTTTTTGAGGCGTCGTC+GGG - chr8_3:49952072-49952091 Msa1293050:intron 50.0%
AGTGTGGAGGGAGTTGCAAA+AGG - chr8_3:49952839-49952858 Msa1293050:CDS 50.0%
TGTACCATATGGCACGGCAT+TGG - chr8_3:49953486-49953505 Msa1293050:five_prime_UTR 50.0%
ACAACCAATGCCGTGCCATA+TGG + chr8_3:49953493-49953512 None:intergenic 50.0%
CGTACGTGAACGAGCTTGGA+GGG + chr8_3:49950380-49950399 None:intergenic 55.0%
ACGTACGTGAACGAGCTTGG+AGG + chr8_3:49950381-49950400 None:intergenic 55.0%
AAGGTCAGTCGATCAGACGG+GGG - chr8_3:49952021-49952040 Msa1293050:intron 55.0%
CGTACGTGAACGAGCTTGGA+GGG + chr8_3:49950380-49950399 None:intergenic 55.0%
ACGTACGTGAACGAGCTTGG+AGG + chr8_3:49950381-49950400 None:intergenic 55.0%
GACCCGACGACGCCTCAAAA+AGG + chr8_3:49952077-49952096 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 49949691 49953537 49949691 ID=Msa1293050;Name=Msa1293050
chr8_3 mRNA 49949691 49953537 49949691 ID=Msa1293050-mRNA-1;Parent=Msa1293050;Name=Msa1293050-mRNA-1;_AED=0.21;_eAED=0.21;_QI=128|0.8|0.83|1|0.2|0.33|6|334|175
chr8_3 exon 49949691 49950028 49949691 ID=Msa1293050-mRNA-1:exon:13907;Parent=Msa1293050-mRNA-1
chr8_3 exon 49950309 49950387 49950309 ID=Msa1293050-mRNA-1:exon:13906;Parent=Msa1293050-mRNA-1
chr8_3 exon 49950483 49950588 49950483 ID=Msa1293050-mRNA-1:exon:13905;Parent=Msa1293050-mRNA-1
chr8_3 exon 49952830 49952912 49952830 ID=Msa1293050-mRNA-1:exon:13904;Parent=Msa1293050-mRNA-1
chr8_3 exon 49953010 49953115 49953010 ID=Msa1293050-mRNA-1:exon:13903;Parent=Msa1293050-mRNA-1
chr8_3 exon 49953260 49953537 49953260 ID=Msa1293050-mRNA-1:exon:13902;Parent=Msa1293050-mRNA-1
chr8_3 five_prime_UTR 49953410 49953537 49953410 ID=Msa1293050-mRNA-1:five_prime_utr;Parent=Msa1293050-mRNA-1
chr8_3 CDS 49953260 49953409 49953260 ID=Msa1293050-mRNA-1:cds;Parent=Msa1293050-mRNA-1
chr8_3 CDS 49953010 49953115 49953010 ID=Msa1293050-mRNA-1:cds;Parent=Msa1293050-mRNA-1
chr8_3 CDS 49952830 49952912 49952830 ID=Msa1293050-mRNA-1:cds;Parent=Msa1293050-mRNA-1
chr8_3 CDS 49950483 49950588 49950483 ID=Msa1293050-mRNA-1:cds;Parent=Msa1293050-mRNA-1
chr8_3 CDS 49950309 49950387 49950309 ID=Msa1293050-mRNA-1:cds;Parent=Msa1293050-mRNA-1
chr8_3 CDS 49950025 49950028 49950025 ID=Msa1293050-mRNA-1:cds;Parent=Msa1293050-mRNA-1
chr8_3 three_prime_UTR 49949691 49950024 49949691 ID=Msa1293050-mRNA-1:three_prime_utr;Parent=Msa1293050-mRNA-1
Gene Sequence

>Msa1293050

ATGTACTTTTTCTCTGTGTGCTTTCTTCTATTTCTTTCTATATTCTATTTGTTTTGTCCATTAGCAACAGAATTAAGCACAATGCATGATCACACTCACCAATACCCTCTTCCTTGTTTGTATTGTCATCCACATAGCTATATTAGAATGGTTCAAAACCTGATAGAGAGATGCATGATCTTTCACATGAGTCAAGACCAATGCATAAAGGCACTAGAAGAACATGCAGGGATTCAGCCACTTGTTACTCTTACAGTGTGGAGAGAGTTGCAAAAGGAGAATGAAGAGTTCTTTAGAGCATATTTGCAACAATTTATCCCTCCAAGCTCGTTCACGTACGTTCAAAATCTCATAGAGAGATGCATGATCTTTCACATGAGTCAAGACCAATGCATAAAGGCACTAGAAGAACATGCAGGGATTCAGCCACTTGTTACTCTTACAGTGTGGAGGGAGTTGCAAAAGGAGAATGAAGAGTTCTTTAGAGCATATTTGCAACAATTTATCCCTCCAAGCTCGTTCACGTAG

Protein sequence

>Msa1293050

MYFFSVCFLLFLSIFYLFCPLATELSTMHDHTHQYPLPCLYCHPHSYIRMVQNLIERCMIFHMSQDQCIKALEEHAGIQPLVTLTVWRELQKENEEFFRAYLQQFIPPSSFTYVQNLIERCMIFHMSQDQCIKALEEHAGIQPLVTLTVWRELQKENEEFFRAYLQQFIPPSSFT*