AlfalfaGEDB | Msa0597000

M. sativa cultivar zhongmu-4 / Msa0597000

KEGG: K22390
GO: GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597000	PNX55879.1	95.349	86	4	0	1	86	29	114	2.44e-55	176

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597000	sp\|Q9SIV9\|PPA10_ARATH	91.860	86	7	0	1	86	317	402	3.21e-52	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597000	A0A2K3JPB6	95.349	86	4	0	1	86	29	114	1.17e-55	176

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003930	Msa0597000	0.816929	4.292497e-52	-8.615850e-47
Msa0008220	Msa0597000	0.855702	5.282338e-62	-8.615850e-47
Msa0012710	Msa0597000	0.802439	5.608015e-49	-8.615850e-47
Msa0015460	Msa0597000	0.841180	5.555148e-58	-8.615850e-47
Msa0015480	Msa0597000	0.814520	1.477454e-51	-8.615850e-47
Msa0017320	Msa0597000	0.831335	1.769257e-55	-8.615850e-47
Msa0027390	Msa0597000	0.802197	6.289565e-49	-8.615850e-47
Msa0031820	Msa0597000	0.803433	3.494259e-49	-8.615850e-47
Msa0033880	Msa0597000	0.829550	4.835479e-55	-8.615850e-47
Msa0037160	Msa0597000	0.801019	1.096968e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597000	MtrunA17_Chr4g0019091	100.000	86	0	0	1	86	313	398	3.67e-57	181
Msa0597000	MtrunA17_Chr1g0211041	90.698	86	8	0	1	86	315	400	6.94e-52	168
Msa0597000	MtrunA17_Chr4g0019071	84.884	86	13	0	1	86	190	275	6.71e-51	162
Msa0597000	MtrunA17_Chr4g0064541	69.767	86	26	0	1	86	312	397	2.87e-37	129
Msa0597000	MtrunA17_Chr3g0121411	51.190	84	30	1	2	85	366	438	2.11e-20	83.6
Msa0597000	MtrunA17_Chr6g0453731	48.780	82	31	1	1	82	365	435	3.07e-20	83.2
Msa0597000	MtrunA17_Chr3g0121431	51.190	84	30	1	2	85	421	493	1.61e-19	80.9
Msa0597000	MtrunA17_Chr7g0236041	48.810	84	32	1	2	85	365	437	1.84e-19	80.9
Msa0597000	MtrunA17_Chr7g0266131	48.235	85	33	1	1	85	298	371	2.37e-19	80.5
Msa0597000	MtrunA17_Chr1g0178831	46.512	86	33	2	1	85	290	363	1.58e-17	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0597000	AT2G16430.1	91.860	86	7	0	1	86	197	282	2.86e-54	171
Msa0597000	AT2G16430.2	91.860	86	7	0	1	86	317	402	3.26e-53	172
Msa0597000	AT3G46120.1	75.294	85	21	0	1	85	237	321	8.60e-46	150
Msa0597000	AT2G27190.1	79.070	86	18	0	1	86	318	403	6.00e-45	150
Msa0597000	AT2G18130.1	72.941	85	23	0	1	85	294	378	1.60e-44	148
Msa0597000	AT1G56360.1	71.765	85	24	0	1	85	313	397	4.17e-42	142
Msa0597000	AT4G36350.1	72.941	85	23	0	1	85	313	397	7.66e-42	142
Msa0597000	AT5G34850.1	68.235	85	27	0	1	85	311	395	8.14e-35	123
Msa0597000	AT4G13700.1	52.439	82	28	1	1	82	359	429	3.73e-21	85.9
Msa0597000	AT3G52820.1	49.412	85	32	1	1	85	291	364	2.07e-19	80.9

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Find 29 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGTTCATAGGCATGCACA+TGG	0.651957	4_2:+28772268	None:intergenic
AAGGTTCCCTCCATCTCCAA+TGG	0.563747	4_2:+28771952	None:intergenic
AAGGTTGATGTTGTGTATGC+TGG	0.518804	4_2:-28772291	Msa0597000:CDS
AATATACACCACAATACAAA+TGG	0.460805	4_2:-28772461	Msa0597000:five_prime_UTR
ACAATACAAATGGCTTGAAC+AGG	0.479670	4_2:-28772451	Msa0597000:five_prime_UTR
ACAATTATCATTACATGGAA+GGG	0.525105	4_2:-28772356	Msa0597000:CDS
ACATAACCATTGGAGATGGA+GGG	0.652593	4_2:-28771958	Msa0597000:CDS
ACCTTGTACTTAACAAACCA+TGG	0.616531	4_2:+28772309	None:intergenic
ACTTGGTTGCTAAGCCTTCA+AGG	0.359090	4_2:+28771933	None:intergenic
AGCACTTACAGAACGTTCAT+AGG	0.420944	4_2:+28772257	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTATCATTACATGGAAG+GGG	-	chr4_2:28772046-28772065	Msa0597000:intron	30.0%
ACAAACAAATCAGTTGTTAC+AGG	+	chr4_2:28772342-28772361	None:intergenic	30.0%
CAATTATCATTACATGGAAG+GGG	-	chr4_2:28772046-28772065	Msa0597000:intron	30.0%
ACAAACAAATCAGTTGTTAC+AGG	+	chr4_2:28772342-28772361	None:intergenic	30.0%
TGTTCAAGCCATTTGTATTG+TGG	+	chr4_2:28771951-28771970	None:intergenic	35.0%
ACAATACAAATGGCTTGAAC+AGG	-	chr4_2:28771950-28771969	Msa0597000:CDS	35.0%
ACCTTGTACTTAACAAACCA+TGG	+	chr4_2:28772095-28772114	None:intergenic	35.0%
TCTCCAATGGTTATGTATAC+AGG	+	chr4_2:28772439-28772458	None:intergenic	35.0%
GTATACATAACCATTGGAGA+TGG	-	chr4_2:28772439-28772458	Msa0597000:five_prime_UTR	35.0%
TGTTCAAGCCATTTGTATTG+TGG	+	chr4_2:28771951-28771970	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	28771937	28772486	28771937	ID=Msa0597000;Name=Msa0597000
chr4_2	mRNA	28771937	28772486	28771937	ID=Msa0597000-mRNA-1;Parent=Msa0597000;Name=Msa0597000-mRNA-1;_AED=0.11;_eAED=0.11;_QI=83\|1\|0\|1\|1\|1\|2\|0\|86
chr4_2	exon	28771937	28772056	28771937	ID=Msa0597000-mRNA-1:exon:7353;Parent=Msa0597000-mRNA-1
chr4_2	exon	28772266	28772486	28772266	ID=Msa0597000-mRNA-1:exon:7352;Parent=Msa0597000-mRNA-1
chr4_2	five_prime_UTR	28772404	28772486	28772404	ID=Msa0597000-mRNA-1:five_prime_utr;Parent=Msa0597000-mRNA-1
chr4_2	CDS	28772266	28772403	28772266	ID=Msa0597000-mRNA-1:cds;Parent=Msa0597000-mRNA-1
chr4_2	CDS	28771937	28772056	28771937	ID=Msa0597000-mRNA-1:cds;Parent=Msa0597000-mRNA-1

Gene Sequence	>Msa0597000 ATGCATTCACCTTGGTATAATAGCTACAATTATCATTACATGGAAGGGGAATCAATGAGAGTAATGTATGAGCCATGGTTTGTTAAGTACAAGGTTGATGTTGTGTATGCTGGCCATGTGCATGCCTATGAACGTTCTGAACGTGTGTCCAATGTTGCATATAATGTTGTAAATGGTATTTGCACTCCCATAAAAGATCAATCAGCTCCTGTATACATAACCATTGGAGATGGAGGGAACCTTGAAGGCTTAGCAACC
Protein sequence	>Msa0597000 MHSPWYNSYNYHYMEGESMRVMYEPWFVKYKVDVVYAGHVHAYERSERVSNVAYNVVNGICTPIKDQSAPVYITIGDGGNLEGLAT