AlfalfaGEDB | Msa0183840

M. sativa cultivar zhongmu-4 / Msa0183840

KEGG: K02978
GO: GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01667.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183840	XP_010482041.1	93.478	92	6	0	8	99	46	137	2.57e-56	180

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183840	sp\|Q9M2F1\|RS272_ARATH	96.471	85	3	0	15	99	2	86	1.10e-57	175

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183840	A0A151TEH8	96.552	87	3	0	13	99	1	87	3.50e-56	177

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027590	Msa0183840	0.812452	4.210291e-51	-8.615850e-47
Msa0027610	Msa0183840	-0.818480	1.917846e-52	-8.615850e-47
Msa0029730	Msa0183840	0.841011	6.152914e-58	-8.615850e-47
Msa0037230	Msa0183840	0.800828	1.199902e-48	-8.615850e-47
Msa0044010	Msa0183840	0.882156	1.318768e-70	-8.615850e-47
Msa0050530	Msa0183840	0.816109	6.550571e-52	-8.615850e-47
Msa0071640	Msa0183840	0.851287	9.790746e-61	-8.615850e-47
Msa0075370	Msa0183840	-0.823204	1.570658e-53	-8.615850e-47
Msa0077320	Msa0183840	0.803324	3.679991e-49	-8.615850e-47
Msa0089540	Msa0183840	0.846815	1.713739e-59	-8.615850e-47
Msa0090580	Msa0183840	0.831933	1.260304e-55	-8.615850e-47
Msa0099090	Msa0183840	-0.824054	9.936215e-54	-8.615850e-47
Msa0100600	Msa0183840	0.804466	2.131486e-49	-8.615850e-47
Msa0100890	Msa0183840	0.800535	1.376826e-48	-8.615850e-47
Msa0114600	Msa0183840	0.840351	9.161428e-58	-8.615850e-47
Msa0123290	Msa0183840	0.811142	8.117182e-51	-8.615850e-47
Msa0123310	Msa0183840	-0.803160	3.980621e-49	-8.615850e-47
Msa0132460	Msa0183840	0.820643	6.153768e-53	-8.615850e-47
Msa0134580	Msa0183840	0.802814	4.691715e-49	-8.615850e-47
Msa0167800	Msa0183840	-0.811866	5.651649e-51	-8.615850e-47
Msa0167860	Msa0183840	0.855404	6.453081e-62	-8.615850e-47
Msa0169710	Msa0183840	0.887806	1.031953e-72	-8.615850e-47
Msa0182050	Msa0183840	0.817260	3.615623e-52	-8.615850e-47
Msa0182100	Msa0183840	0.809694	1.667529e-50	-8.615850e-47
Msa0183840	Msa0187810	0.809539	1.800349e-50	-8.615850e-47
Msa0183840	Msa0188740	0.822491	2.302725e-53	-8.615850e-47
Msa0183840	Msa0192050	0.800051	1.727623e-48	-8.615850e-47
Msa0183840	Msa0192300	0.831942	1.254002e-55	-8.615850e-47
Msa0183840	Msa0195030	0.847884	8.717143e-60	-8.615850e-47
Msa0183840	Msa0237180	0.861333	1.104794e-63	-8.615850e-47
Msa0183840	Msa0239420	0.828859	7.113430e-55	-8.615850e-47
Msa0183840	Msa0270160	0.813490	2.493657e-51	-8.615850e-47
Msa0183840	Msa0274940	0.843700	1.192432e-58	-8.615850e-47
Msa0183840	Msa0277600	0.809117	2.217438e-50	-8.615850e-47
Msa0183840	Msa0281330	0.895617	8.080397e-76	-8.615850e-47
Msa0183840	Msa0281370	0.893440	6.274663e-75	-8.615850e-47
Msa0183840	Msa0301250	0.820638	6.170188e-53	-8.615850e-47
Msa0183840	Msa0313060	0.855603	5.646225e-62	-8.615850e-47
Msa0183840	Msa0315430	0.804824	1.794070e-49	-8.615850e-47
Msa0183840	Msa0315660	0.863752	1.989131e-64	-8.615850e-47
Msa0183840	Msa0370350	-0.810934	9.003926e-51	-8.615850e-47
Msa0183840	Msa0371490	0.831289	1.815812e-55	-8.615850e-47
Msa0183840	Msa0372100	0.819915	9.036351e-53	-8.615850e-47
Msa0183840	Msa0376850	0.845730	3.383613e-59	-8.615850e-47
Msa0183840	Msa0377370	0.811666	6.246485e-51	-8.615850e-47
Msa0183840	Msa0377520	0.826200	3.090917e-54	-8.615850e-47
Msa0183840	Msa0378620	-0.840798	6.997209e-58	-8.615850e-47
Msa0183840	Msa0380590	0.818692	1.716338e-52	-8.615850e-47
Msa0183840	Msa0385030	0.807426	5.084794e-50	-8.615850e-47
Msa0183840	Msa0388520	0.820020	8.552238e-53	-8.615850e-47
Msa0183840	Msa0416210	0.819461	1.147738e-52	-8.615850e-47
Msa0183840	Msa0417850	-0.813200	2.887180e-51	-8.615850e-47
Msa0183840	Msa0430130	0.801704	7.943074e-49	-8.615850e-47
Msa0183840	Msa0432260	-0.824839	6.495466e-54	-8.615850e-47
Msa0183840	Msa0450150	0.815648	8.300017e-52	-8.615850e-47
Msa0183840	Msa0476730	-0.809031	2.313093e-50	-8.615850e-47
Msa0183840	Msa0480940	0.805541	1.270045e-49	-8.615850e-47
Msa0183840	Msa0500420	0.819673	1.026246e-52	-8.615850e-47
Msa0183840	Msa0516830	0.846014	2.833977e-59	-8.615850e-47
Msa0183840	Msa0521100	-0.801725	7.863124e-49	-8.615850e-47
Msa0183840	Msa0521730	0.803908	2.785321e-49	-8.615850e-47
Msa0183840	Msa0526490	-0.820704	5.960063e-53	-8.615850e-47
Msa0183840	Msa0547920	0.829614	4.663696e-55	-8.615850e-47
Msa0183840	Msa0550490	0.802515	5.409738e-49	-8.615850e-47
Msa0183840	Msa0573550	0.866754	2.261614e-65	-8.615850e-47
Msa0183840	Msa0602900	0.825163	5.443630e-54	-8.615850e-47
Msa0183840	Msa0605890	0.838048	3.624869e-57	-8.615850e-47
Msa0183840	Msa0609120	0.809020	2.326054e-50	-8.615850e-47
Msa0183840	Msa0619230	0.830695	2.540785e-55	-8.615850e-47
Msa0183840	Msa0643960	0.831396	1.708978e-55	-8.615850e-47
Msa0183840	Msa0659020	-0.800274	1.556351e-48	-8.615850e-47
Msa0183840	Msa0691740	-0.814090	1.838672e-51	-8.615850e-47
Msa0183840	Msa0691760	0.800656	1.301236e-48	-8.615850e-47
Msa0183840	Msa0704860	0.842489	2.507246e-58	-8.615850e-47
Msa0183840	Msa0708630	0.821240	4.484824e-53	-8.615850e-47
Msa0183840	Msa0748350	0.805094	1.575760e-49	-8.615850e-47
Msa0183840	Msa0767280	0.811724	6.067832e-51	-8.615850e-47
Msa0183840	Msa0790450	0.844120	9.205925e-59	-8.615850e-47
Msa0183840	Msa0812020	-0.805804	1.118299e-49	-8.615850e-47
Msa0183840	Msa0834220	0.803682	3.102359e-49	-8.615850e-47
Msa0183840	Msa0846900	0.824405	8.215989e-54	-8.615850e-47
Msa0183840	Msa0929700	0.866540	2.645512e-65	-8.615850e-47
Msa0183840	Msa1019090	0.820884	5.417994e-53	-8.615850e-47
Msa0183840	Msa1025200	0.837625	4.655290e-57	-8.615850e-47
Msa0183840	Msa1025220	0.851967	6.282780e-61	-8.615850e-47
Msa0183840	Msa1026710	0.804337	2.267352e-49	-8.615850e-47
Msa0183840	Msa1078480	0.811501	6.784229e-51	-8.615850e-47
Msa0183840	Msa1078640	0.817793	2.742418e-52	-8.615850e-47
Msa0183840	Msa1082050	0.800692	1.279103e-48	-8.615850e-47
Msa0183840	Msa1126690	0.843884	1.064655e-58	-8.615850e-47
Msa0183840	Msa1144610	0.802707	4.936637e-49	-8.615850e-47
Msa0183840	Msa1156830	0.806347	8.596680e-50	-8.615850e-47
Msa0183840	Msa1163320	0.837577	4.789421e-57	-8.615850e-47
Msa0183840	Msa1166670	0.803215	3.877328e-49	-8.615850e-47
Msa0183840	Msa1206240	0.834902	2.291623e-56	-8.615850e-47
Msa0183840	Msa1220580	0.805949	1.042594e-49	-8.615850e-47
Msa0183840	Msa1227350	0.800720	1.262562e-48	-8.615850e-47
Msa0183840	Msa1235950	0.803958	2.718973e-49	-8.615850e-47
Msa0183840	Msa1235980	0.803261	3.792157e-49	-8.615850e-47
Msa0183840	Msa1237040	0.820932	5.281613e-53	-8.615850e-47
Msa0183840	Msa1296090	0.803498	3.386924e-49	-8.615850e-47
Msa0183840	Msa1329020	-0.815045	1.130379e-51	-8.615850e-47
Msa0183840	Msa1330730	0.817773	2.771288e-52	-8.615850e-47
Msa0183840	Msa1334560	0.804957	1.683459e-49	-8.615850e-47
Msa0183840	Msa1347610	0.803202	3.900670e-49	-8.615850e-47
Msa0183840	Msa1351020	0.851423	8.961266e-61	-8.615850e-47
Msa0183840	Msa1363270	-0.807552	4.779699e-50	-8.615850e-47
Msa0183840	Msa1367540	0.825239	5.224245e-54	-8.615850e-47
Msa0183840	Msa1390760	0.835730	1.415258e-56	-8.615850e-47
Msa0183840	Msa1424570	0.825896	3.649507e-54	-8.615850e-47
Msa0183840	Msa1446510	0.858037	1.084716e-62	-8.615850e-47
Msa0183840	Msa1450560	0.840965	6.328693e-58	-8.615850e-47
Msa0183840	Msa1465700	0.807656	4.544365e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183840	MtrunA17_Chr2g0291901	100.000	85	0	15	99	2	86	8.33e-60	177
Msa0183840	MtrunA17_Chr1g0210581	100.000	85	0	15	99	2	86	8.33e-60	177
Msa0183840	MtrunA17_Chr2g0283551	98.824	85	1	15	99	2	86	1.90e-59	176

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0183840	AT3G61110.1	96.471	85	3	15	99	2	86	1.12e-58	175
Msa0183840	AT2G45710.1	95.181	83	4	15	97	2	84	1.05e-55	167
Msa0183840	AT5G47930.1	96.386	83	3	15	97	2	84	2.85e-55	166
Msa0183840	AT3G61111.1	83.529	85	14	15	99	2	86	1.35e-48	149
Msa0183840	AT3G61111.2	80.488	41	8	15	55	2	42	1.11e-17	71.2

Find 43 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATTATTTAATGAGAAATTT+TGG	0.186968	1_4:-72814917	Msa0183840:three_prime_UTR
TTGCTTTGCCGCCGGTTGGC+TGG	0.271725	1_4:+72815027	None:intergenic
TCCACAGCCCTCTCAACTTT+GGG	0.311830	1_4:+72816280	None:intergenic
TAACAGAGGGGTGCTCCTTC+AGG	0.320285	1_4:-72815001	Msa0183840:CDS
ATCTCCTAACTCATTCTTCA+TGG	0.338607	1_4:-72815870	Msa0183840:intron
TCAAGAGATCGATGTCGTTT+TGG	0.351397	1_4:+72815945	None:intergenic
TGAGTAAATTTGGTTTGATA+TGG	0.363323	1_4:-72814812	Msa0183840:three_prime_UTR
TTCCACAGCCCTCTCAACTT+TGG	0.365114	1_4:+72816279	None:intergenic
CACTAGTCATGCTAAATTAG+AGG	0.384775	1_4:+72814651	None:intergenic
GGAAGAAGGGTGATTAGTTA+TGG	0.386772	1_4:-72814980	Msa0183840:exon
GCATGACTAGTGTACTTGTT+TGG	0.418818	1_4:-72814640	Msa0183840:three_prime_UTR
AATACCATGAAGAATGAGTT+AGG	0.426658	1_4:+72815866	None:intergenic
AAATTTAATTTAGTGCTAAC+GGG	0.427882	1_4:+72814775	None:intergenic
CTTACATGTTGAAGCATCCT+TGG	0.445045	1_4:+72815735	None:intergenic
AGCCAACCGGCGGCAAAGCA+AGG	0.463038	1_4:-72815025	Msa0183840:CDS
ACACATTAACACAAGACAAC+TGG	0.469557	1_4:+72814864	None:intergenic
GGTATGGCTACATGTGTCAT+AGG	0.470144	1_4:-72814619	Msa0183840:three_prime_UTR
ACGGTATTGTGCCAGCCAAC+CGG	0.474939	1_4:-72815038	Msa0183840:CDS
AGCCTTGCTTTGCCGCCGGT+TGG	0.478403	1_4:+72815023	None:intergenic
TAAATTTAATTTAGTGCTAA+CGG	0.479815	1_4:+72814774	None:intergenic
CACCAGCGGAGCTTGAGAAA+AGG	0.496318	1_4:-72815919	Msa0183840:CDS
GGGGTGCTCCTTCAGGAAGA+AGG	0.503456	1_4:-72814994	Msa0183840:CDS
TCTCAAACAGTCGTGGTTTG+CGG	0.511373	1_4:-72815071	Msa0183840:CDS
TAAATTTGGTTTGATATGGT+TGG	0.518219	1_4:-72814808	Msa0183840:three_prime_UTR
TGTTAGCCTTGCTTTGCCGC+CGG	0.526081	1_4:+72815019	None:intergenic
ACTAGTGTACTTGTTTGGTA+TGG	0.527204	1_4:-72814635	Msa0183840:three_prime_UTR
TTATAGGATGTCAAATGCCA+AGG	0.569104	1_4:-72815752	Msa0183840:intron
GGGTGCTCCTTCAGGAAGAA+GGG	0.579020	1_4:-72814993	Msa0183840:CDS
GGCAAAGCAAGGCTAACAGA+GGG	0.582316	1_4:-72815014	Msa0183840:CDS
GATGGGACCCAAAGTTGAGA+GGG	0.597213	1_4:-72816287	Msa0183840:CDS
ACCCAAAGTTGAGAGGGCTG+TGG	0.599911	1_4:-72816281	Msa0183840:CDS
ACTAGTCATGCTAAATTAGA+GGG	0.602198	1_4:+72814652	None:intergenic
CTAATCACCCTTCTTCCTGA+AGG	0.602303	1_4:+72814986	None:intergenic
AGATGGGACCCAAAGTTGAG+AGG	0.608186	1_4:-72816288	Msa0183840:CDS
TAGCCACTCTCAAACAGTCG+TGG	0.620995	1_4:-72815078	Msa0183840:CDS
GGCTGTGGAATCAAATGTGG+AGG	0.628873	1_4:-72816266	Msa0183840:intron
CGGCAAAGCAAGGCTAACAG+AGG	0.648379	1_4:-72815015	Msa0183840:CDS
GGTTTGCGGCAACTGTCAGA+CGG	0.650064	1_4:-72815057	Msa0183840:CDS
AAACCACGACTGTTTGAGAG+TGG	0.670924	1_4:+72815075	None:intergenic
GAGGGCTGTGGAATCAAATG+TGG	0.673501	1_4:-72816269	Msa0183840:CDS
CGATCTCTTGAACCCACCAG+CGG	0.674494	1_4:-72815933	Msa0183840:CDS
GCAAAGCAAGGCTAACAGAG+GGG	0.682022	1_4:-72815013	Msa0183840:CDS
GTATTGTGCCAGCCAACCGG+CGG	0.694777	1_4:-72815035	Msa0183840:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAAAAACAAATTACAAA+CGG	+	chr1_4:72815099-72815118	None:intergenic	10.0%
!!!	TTATTATATTTCTATCATTT+AGG	-	chr1_4:72815516-72815535	Msa0183840:intron	10.0%
!!!	TTTTTTTTTGTTTTTTTTGA+AGG	-	chr1_4:72816157-72816176	Msa0183840:intron	10.0%
!!	AAAAAAAAACAAATTACAAA+CGG	+	chr1_4:72815099-72815118	None:intergenic	10.0%
!!!	TTATTATATTTCTATCATTT+AGG	-	chr1_4:72815516-72815535	Msa0183840:intron	10.0%
!!!	TTTTTTTTTGTTTTTTTTGA+AGG	-	chr1_4:72816157-72816176	Msa0183840:intron	10.0%
!!	TAAATGGAAAATCTATTTAA+AGG	+	chr1_4:72814730-72814749	None:intergenic	15.0%
!!	AATTAACATATACATAACAA+TGG	+	chr1_4:72815068-72815087	None:intergenic	15.0%
!!!	AAATTACTTTTTTATTCAAC+CGG	+	chr1_4:72815253-72815272	None:intergenic	15.0%
!!	TAATCTATCATTTAAATTGA+TGG	-	chr1_4:72815428-72815447	Msa0183840:intron	15.0%
!!	TTTATAATTGTTGAAATTTG+TGG	-	chr1_4:72815774-72815793	Msa0183840:intron	15.0%
!!!	GATTATTTAATGAGAAATTT+TGG	-	chr1_4:72815976-72815995	Msa0183840:intron	15.0%
!!!	TAAATTTAATTTAGTGCTAA+CGG	+	chr1_4:72816122-72816141	None:intergenic	15.0%
!!	TAAATGGAAAATCTATTTAA+AGG	+	chr1_4:72814730-72814749	None:intergenic	15.0%
!!	AATTAACATATACATAACAA+TGG	+	chr1_4:72815068-72815087	None:intergenic	15.0%
!!!	AAATTACTTTTTTATTCAAC+CGG	+	chr1_4:72815253-72815272	None:intergenic	15.0%
!!	TAATCTATCATTTAAATTGA+TGG	-	chr1_4:72815428-72815447	Msa0183840:intron	15.0%
!!	TTTATAATTGTTGAAATTTG+TGG	-	chr1_4:72815774-72815793	Msa0183840:intron	15.0%
!!!	GATTATTTAATGAGAAATTT+TGG	-	chr1_4:72815976-72815995	Msa0183840:intron	15.0%
!!!	TAAATTTAATTTAGTGCTAA+CGG	+	chr1_4:72816122-72816141	None:intergenic	15.0%
!!!	TATATCATATCTTTTTCACA+TGG	-	chr1_4:72814673-72814692	Msa0183840:three_prime_UTR	20.0%
!!!	ATATCATATCTTTTTCACAT+GGG	-	chr1_4:72814674-72814693	Msa0183840:three_prime_UTR	20.0%
!!	AAAAGACTGTAAATGTTAAA+TGG	+	chr1_4:72814746-72814765	None:intergenic	20.0%
!!	CAAACTTAATCAATCATAAT+TGG	+	chr1_4:72814904-72814923	None:intergenic	20.0%
!!!	TTTCTCTTTGTATTTGTTAT+AGG	-	chr1_4:72815125-72815144	Msa0183840:intron	20.0%
!!!	AATTACTTTTTTATTCAACC+GGG	+	chr1_4:72815252-72815271	None:intergenic	20.0%
!!	GGTTTATTCAACTAAAAAAA+TGG	+	chr1_4:72815314-72815333	None:intergenic	20.0%
!!	TAGTTCAATGACTAAATTTA+AGG	+	chr1_4:72815335-72815354	None:intergenic	20.0%
!!	TTATTATACTTATACAACTC+AGG	+	chr1_4:72815378-72815397	None:intergenic	20.0%
!!	TATAAGTATAATAAACAGTC+CGG	-	chr1_4:72815384-72815403	Msa0183840:intron	20.0%
!!	TGACTAAATTAATAGAATTC+CGG	+	chr1_4:72815406-72815425	None:intergenic	20.0%
!!!	TATGCATATTTTTATCGTTT+AGG	-	chr1_4:72815455-72815474	Msa0183840:intron	20.0%
!!!	TTTGACTTGTTAGTTTATAA+TGG	-	chr1_4:72815636-72815655	Msa0183840:intron	20.0%
!!	TTTATAATGGTTGAAATTTG+TGG	-	chr1_4:72815649-72815668	Msa0183840:intron	20.0%
!!	AATTGAAACCAACTTATTAT+AGG	-	chr1_4:72815728-72815747	Msa0183840:intron	20.0%
!!!	AAATTTAATTTAGTGCTAAC+GGG	+	chr1_4:72816121-72816140	None:intergenic	20.0%
!!!	TATATCATATCTTTTTCACA+TGG	-	chr1_4:72814673-72814692	Msa0183840:three_prime_UTR	20.0%
!!!	ATATCATATCTTTTTCACAT+GGG	-	chr1_4:72814674-72814693	Msa0183840:three_prime_UTR	20.0%
!!	AAAAGACTGTAAATGTTAAA+TGG	+	chr1_4:72814746-72814765	None:intergenic	20.0%
!!	CAAACTTAATCAATCATAAT+TGG	+	chr1_4:72814904-72814923	None:intergenic	20.0%
!!!	TTTCTCTTTGTATTTGTTAT+AGG	-	chr1_4:72815125-72815144	Msa0183840:intron	20.0%
!!!	AATTACTTTTTTATTCAACC+GGG	+	chr1_4:72815252-72815271	None:intergenic	20.0%
!!	GGTTTATTCAACTAAAAAAA+TGG	+	chr1_4:72815314-72815333	None:intergenic	20.0%
!!	TAGTTCAATGACTAAATTTA+AGG	+	chr1_4:72815335-72815354	None:intergenic	20.0%
!!	TTATTATACTTATACAACTC+AGG	+	chr1_4:72815378-72815397	None:intergenic	20.0%
!!	TATAAGTATAATAAACAGTC+CGG	-	chr1_4:72815384-72815403	Msa0183840:intron	20.0%
!!	TGACTAAATTAATAGAATTC+CGG	+	chr1_4:72815406-72815425	None:intergenic	20.0%
!!!	TATGCATATTTTTATCGTTT+AGG	-	chr1_4:72815455-72815474	Msa0183840:intron	20.0%
!!!	TTTGACTTGTTAGTTTATAA+TGG	-	chr1_4:72815636-72815655	Msa0183840:intron	20.0%
!!	TTTATAATGGTTGAAATTTG+TGG	-	chr1_4:72815649-72815668	Msa0183840:intron	20.0%
!!	AATTGAAACCAACTTATTAT+AGG	-	chr1_4:72815728-72815747	Msa0183840:intron	20.0%
!!!	AAATTTAATTTAGTGCTAAC+GGG	+	chr1_4:72816121-72816140	None:intergenic	20.0%
!!!	TTGATGATTTTGTTGTTTTC+AGG	-	chr1_4:72814921-72814940	Msa0183840:three_prime_UTR	25.0%
!!	AATTTGACTTCTACTTTGAA+GGG	+	chr1_4:72815699-72815718	None:intergenic	25.0%
!!	AAATTTGACTTCTACTTTGA+AGG	+	chr1_4:72815700-72815719	None:intergenic	25.0%
!!!	ATAAAACTCTAGTCTTTTTG+AGG	-	chr1_4:72815943-72815962	Msa0183840:CDS	25.0%
!!!	TAAAACTCTAGTCTTTTTGA+GGG	-	chr1_4:72815944-72815963	Msa0183840:CDS	25.0%
!!!	GAGAAGATTTTGAGTAAATT+TGG	-	chr1_4:72816071-72816090	Msa0183840:intron	25.0%
!!!	TGAGTAAATTTGGTTTGATA+TGG	-	chr1_4:72816081-72816100	Msa0183840:intron	25.0%
!!!	TAAATTTGGTTTGATATGGT+TGG	-	chr1_4:72816085-72816104	Msa0183840:intron	25.0%
!!!	TTGATGATTTTGTTGTTTTC+AGG	-	chr1_4:72814921-72814940	Msa0183840:three_prime_UTR	25.0%
!!	AATTTGACTTCTACTTTGAA+GGG	+	chr1_4:72815699-72815718	None:intergenic	25.0%
!!	AAATTTGACTTCTACTTTGA+AGG	+	chr1_4:72815700-72815719	None:intergenic	25.0%
!!!	ATAAAACTCTAGTCTTTTTG+AGG	-	chr1_4:72815943-72815962	Msa0183840:CDS	25.0%
!!!	TAAAACTCTAGTCTTTTTGA+GGG	-	chr1_4:72815944-72815963	Msa0183840:CDS	25.0%
!!!	GAGAAGATTTTGAGTAAATT+TGG	-	chr1_4:72816071-72816090	Msa0183840:intron	25.0%
!!!	TGAGTAAATTTGGTTTGATA+TGG	-	chr1_4:72816081-72816100	Msa0183840:intron	25.0%
!!!	TAAATTTGGTTTGATATGGT+TGG	-	chr1_4:72816085-72816104	Msa0183840:intron	25.0%
	AATCTCATCAAGAGTTTCTA+GGG	-	chr1_4:72814792-72814811	Msa0183840:three_prime_UTR	30.0%
	TAAAGAAACAAAAGAGAGAG+TGG	+	chr1_4:72814858-72814877	None:intergenic	30.0%
	AATACCATGAAGAATGAGTT+AGG	+	chr1_4:72815030-72815049	None:intergenic	30.0%
	TTATATAGATACTAGAGACC+CGG	-	chr1_4:72815231-72815250	Msa0183840:intron	30.0%
	CAATGTCACAATGATTGTTA+TGG	-	chr1_4:72815480-72815499	Msa0183840:intron	30.0%
!	TCCTGTATAAGTCGAATTTT+TGG	-	chr1_4:72815576-72815595	Msa0183840:intron	30.0%
	ACCAAAAATTCGACTTATAC+AGG	+	chr1_4:72815580-72815599	None:intergenic	30.0%
!	CTTTGAAGGGAAAATAAATG+TGG	+	chr1_4:72815686-72815705	None:intergenic	30.0%
!!	AAAGGTGTCCTATAATAAGT+TGG	+	chr1_4:72815739-72815758	None:intergenic	30.0%
	AAACCAACAAGTCAAATCAA+AGG	+	chr1_4:72815757-72815776	None:intergenic	30.0%
!!	AAAACTCTAGTCTTTTTGAG+GGG	-	chr1_4:72815945-72815964	Msa0183840:CDS	30.0%
	ACTAGTCATGCTAAATTAGA+GGG	+	chr1_4:72816244-72816263	None:intergenic	30.0%
	AATCTCATCAAGAGTTTCTA+GGG	-	chr1_4:72814792-72814811	Msa0183840:three_prime_UTR	30.0%
	TAAAGAAACAAAAGAGAGAG+TGG	+	chr1_4:72814858-72814877	None:intergenic	30.0%
	AATACCATGAAGAATGAGTT+AGG	+	chr1_4:72815030-72815049	None:intergenic	30.0%
	TTATATAGATACTAGAGACC+CGG	-	chr1_4:72815231-72815250	Msa0183840:intron	30.0%
	CAATGTCACAATGATTGTTA+TGG	-	chr1_4:72815480-72815499	Msa0183840:intron	30.0%
!	TCCTGTATAAGTCGAATTTT+TGG	-	chr1_4:72815576-72815595	Msa0183840:intron	30.0%
	ACCAAAAATTCGACTTATAC+AGG	+	chr1_4:72815580-72815599	None:intergenic	30.0%
!	CTTTGAAGGGAAAATAAATG+TGG	+	chr1_4:72815686-72815705	None:intergenic	30.0%
!!	AAAGGTGTCCTATAATAAGT+TGG	+	chr1_4:72815739-72815758	None:intergenic	30.0%
	AAACCAACAAGTCAAATCAA+AGG	+	chr1_4:72815757-72815776	None:intergenic	30.0%
!!	AAAACTCTAGTCTTTTTGAG+GGG	-	chr1_4:72815945-72815964	Msa0183840:CDS	30.0%
	ACTAGTCATGCTAAATTAGA+GGG	+	chr1_4:72816244-72816263	None:intergenic	30.0%
!!	CAAATGTGGAGGTACATTTT+AGG	-	chr1_4:72814638-72814657	Msa0183840:three_prime_UTR	35.0%
!	TTTTTCACATGGGCTCTTAA+TGG	-	chr1_4:72814684-72814703	Msa0183840:three_prime_UTR	35.0%
	AACTCTTGATGAGATTGGAA+GGG	+	chr1_4:72814788-72814807	None:intergenic	35.0%
	AAACTCTTGATGAGATTGGA+AGG	+	chr1_4:72814789-72814808	None:intergenic	35.0%
	CTAGAAACTCTTGATGAGAT+TGG	+	chr1_4:72814793-72814812	None:intergenic	35.0%
	CAATCTCATCAAGAGTTTCT+AGG	-	chr1_4:72814791-72814810	Msa0183840:three_prime_UTR	35.0%
	CAATCATAATTGGAGCGATT+CGG	+	chr1_4:72814894-72814913	None:intergenic	35.0%
	ATCTCCTAACTCATTCTTCA+TGG	-	chr1_4:72815023-72815042	Msa0183840:CDS	35.0%
	TTATAGGATGTCAAATGCCA+AGG	-	chr1_4:72815141-72815160	Msa0183840:intron	35.0%
!!	ACACCTTTGATTTGACTTGT+TGG	-	chr1_4:72815751-72815770	Msa0183840:intron	35.0%
	ACACATTAACACAAGACAAC+TGG	+	chr1_4:72816032-72816051	None:intergenic	35.0%
	CACTAGTCATGCTAAATTAG+AGG	+	chr1_4:72816245-72816264	None:intergenic	35.0%
	ACTAGTGTACTTGTTTGGTA+TGG	-	chr1_4:72816258-72816277	Msa0183840:intron	35.0%
!!	CAAATGTGGAGGTACATTTT+AGG	-	chr1_4:72814638-72814657	Msa0183840:three_prime_UTR	35.0%
!	TTTTTCACATGGGCTCTTAA+TGG	-	chr1_4:72814684-72814703	Msa0183840:three_prime_UTR	35.0%
	AACTCTTGATGAGATTGGAA+GGG	+	chr1_4:72814788-72814807	None:intergenic	35.0%
	AAACTCTTGATGAGATTGGA+AGG	+	chr1_4:72814789-72814808	None:intergenic	35.0%
	CTAGAAACTCTTGATGAGAT+TGG	+	chr1_4:72814793-72814812	None:intergenic	35.0%
	CAATCTCATCAAGAGTTTCT+AGG	-	chr1_4:72814791-72814810	Msa0183840:three_prime_UTR	35.0%
	CAATCATAATTGGAGCGATT+CGG	+	chr1_4:72814894-72814913	None:intergenic	35.0%
	ATCTCCTAACTCATTCTTCA+TGG	-	chr1_4:72815023-72815042	Msa0183840:CDS	35.0%
	TTATAGGATGTCAAATGCCA+AGG	-	chr1_4:72815141-72815160	Msa0183840:intron	35.0%
!!	ACACCTTTGATTTGACTTGT+TGG	-	chr1_4:72815751-72815770	Msa0183840:intron	35.0%
	ACACATTAACACAAGACAAC+TGG	+	chr1_4:72816032-72816051	None:intergenic	35.0%
	CACTAGTCATGCTAAATTAG+AGG	+	chr1_4:72816245-72816264	None:intergenic	35.0%
	ACTAGTGTACTTGTTTGGTA+TGG	-	chr1_4:72816258-72816277	Msa0183840:intron	35.0%
	ACTCTTGATGAGATTGGAAG+GGG	+	chr1_4:72814787-72814806	None:intergenic	40.0%
	AGAGAGTGGTTAACCATTGT+CGG	+	chr1_4:72814844-72814863	None:intergenic	40.0%
!!	TCAAGAGATCGATGTCGTTT+TGG	+	chr1_4:72814951-72814970	None:intergenic	40.0%
!	CTTACATGTTGAAGCATCCT+TGG	+	chr1_4:72815161-72815180	None:intergenic	40.0%
!	GGAAGAAGGGTGATTAGTTA+TGG	-	chr1_4:72815913-72815932	Msa0183840:CDS	40.0%
	GCATGACTAGTGTACTTGTT+TGG	-	chr1_4:72816253-72816272	Msa0183840:intron	40.0%
	ACTCTTGATGAGATTGGAAG+GGG	+	chr1_4:72814787-72814806	None:intergenic	40.0%
	AGAGAGTGGTTAACCATTGT+CGG	+	chr1_4:72814844-72814863	None:intergenic	40.0%
!!	TCAAGAGATCGATGTCGTTT+TGG	+	chr1_4:72814951-72814970	None:intergenic	40.0%
!	CTTACATGTTGAAGCATCCT+TGG	+	chr1_4:72815161-72815180	None:intergenic	40.0%
!	GGAAGAAGGGTGATTAGTTA+TGG	-	chr1_4:72815913-72815932	Msa0183840:CDS	40.0%
	GCATGACTAGTGTACTTGTT+TGG	-	chr1_4:72816253-72816272	Msa0183840:intron	40.0%
!	TCATAATTGGAGCGATTCGG+AGG	+	chr1_4:72814891-72814910	None:intergenic	45.0%
	AAACCACGACTGTTTGAGAG+TGG	+	chr1_4:72815821-72815840	None:intergenic	45.0%
	TCTCAAACAGTCGTGGTTTG+CGG	-	chr1_4:72815822-72815841	Msa0183840:intron	45.0%
	CTAATCACCCTTCTTCCTGA+AGG	+	chr1_4:72815910-72815929	None:intergenic	45.0%
	GGTATGGCTACATGTGTCAT+AGG	-	chr1_4:72816274-72816293	Msa0183840:CDS	45.0%
!	TCATAATTGGAGCGATTCGG+AGG	+	chr1_4:72814891-72814910	None:intergenic	45.0%
	AAACCACGACTGTTTGAGAG+TGG	+	chr1_4:72815821-72815840	None:intergenic	45.0%
	TCTCAAACAGTCGTGGTTTG+CGG	-	chr1_4:72815822-72815841	Msa0183840:intron	45.0%
	CTAATCACCCTTCTTCCTGA+AGG	+	chr1_4:72815910-72815929	None:intergenic	45.0%
	GGTATGGCTACATGTGTCAT+AGG	-	chr1_4:72816274-72816293	Msa0183840:CDS	45.0%
	TCCACAGCCCTCTCAACTTT+GGG	+	chr1_4:72814616-72814635	None:intergenic	50.0%
	TTCCACAGCCCTCTCAACTT+TGG	+	chr1_4:72814617-72814636	None:intergenic	50.0%
	GAGGGCTGTGGAATCAAATG+TGG	-	chr1_4:72814624-72814643	Msa0183840:three_prime_UTR	50.0%
	GGCTGTGGAATCAAATGTGG+AGG	-	chr1_4:72814627-72814646	Msa0183840:three_prime_UTR	50.0%
	AGGCGACACTCACTCACATT+GGG	+	chr1_4:72814710-72814729	None:intergenic	50.0%
	AAGGCGACACTCACTCACAT+TGG	+	chr1_4:72814711-72814730	None:intergenic	50.0%
	CATCTCTCAACCTCCGACAA+TGG	-	chr1_4:72814828-72814847	Msa0183840:three_prime_UTR	50.0%
	GAGTGGTTAACCATTGTCGG+AGG	+	chr1_4:72814841-72814860	None:intergenic	50.0%
!	TTTTCTCAAGCTCCGCTGGT+GGG	+	chr1_4:72814975-72814994	None:intergenic	50.0%
!	TTCCTTTTCTCAAGCTCCGC+TGG	+	chr1_4:72814979-72814998	None:intergenic	50.0%
	TAGCCACTCTCAAACAGTCG+TGG	-	chr1_4:72815815-72815834	Msa0183840:intron	50.0%
	GGCAAAGCAAGGCTAACAGA+GGG	-	chr1_4:72815879-72815898	Msa0183840:CDS	50.0%
	GCAAAGCAAGGCTAACAGAG+GGG	-	chr1_4:72815880-72815899	Msa0183840:CDS	50.0%
!!	CTCTAGTCTTTTTGAGGGGC+TGG	-	chr1_4:72815949-72815968	Msa0183840:CDS	50.0%
	TCCACAGCCCTCTCAACTTT+GGG	+	chr1_4:72814616-72814635	None:intergenic	50.0%
	TTCCACAGCCCTCTCAACTT+TGG	+	chr1_4:72814617-72814636	None:intergenic	50.0%
	GAGGGCTGTGGAATCAAATG+TGG	-	chr1_4:72814624-72814643	Msa0183840:three_prime_UTR	50.0%
	GGCTGTGGAATCAAATGTGG+AGG	-	chr1_4:72814627-72814646	Msa0183840:three_prime_UTR	50.0%
	AGGCGACACTCACTCACATT+GGG	+	chr1_4:72814710-72814729	None:intergenic	50.0%
	AAGGCGACACTCACTCACAT+TGG	+	chr1_4:72814711-72814730	None:intergenic	50.0%
	CATCTCTCAACCTCCGACAA+TGG	-	chr1_4:72814828-72814847	Msa0183840:three_prime_UTR	50.0%
	GAGTGGTTAACCATTGTCGG+AGG	+	chr1_4:72814841-72814860	None:intergenic	50.0%
!	TTTTCTCAAGCTCCGCTGGT+GGG	+	chr1_4:72814975-72814994	None:intergenic	50.0%
!	TTCCTTTTCTCAAGCTCCGC+TGG	+	chr1_4:72814979-72814998	None:intergenic	50.0%
	TAGCCACTCTCAAACAGTCG+TGG	-	chr1_4:72815815-72815834	Msa0183840:intron	50.0%
	GGCAAAGCAAGGCTAACAGA+GGG	-	chr1_4:72815879-72815898	Msa0183840:CDS	50.0%
	GCAAAGCAAGGCTAACAGAG+GGG	-	chr1_4:72815880-72815899	Msa0183840:CDS	50.0%
!!	CTCTAGTCTTTTTGAGGGGC+TGG	-	chr1_4:72815949-72815968	Msa0183840:CDS	50.0%
	ACCCAAAGTTGAGAGGGCTG+TGG	-	chr1_4:72814612-72814631	Msa0183840:three_prime_UTR	55.0%
	CGATCTCTTGAACCCACCAG+CGG	-	chr1_4:72814960-72814979	Msa0183840:three_prime_UTR	55.0%
!	CTTTTCTCAAGCTCCGCTGG+TGG	+	chr1_4:72814976-72814995	None:intergenic	55.0%
	CACCAGCGGAGCTTGAGAAA+AGG	-	chr1_4:72814974-72814993	Msa0183840:exon	55.0%
	GGTTTGCGGCAACTGTCAGA+CGG	-	chr1_4:72815836-72815855	Msa0183840:intron	55.0%
	ACGGTATTGTGCCAGCCAAC+CGG	-	chr1_4:72815855-72815874	Msa0183840:intron	55.0%
!!	TGTTAGCCTTGCTTTGCCGC+CGG	+	chr1_4:72815877-72815896	None:intergenic	55.0%
	CGGCAAAGCAAGGCTAACAG+AGG	-	chr1_4:72815878-72815897	Msa0183840:CDS	55.0%
!!	TAACAGAGGGGTGCTCCTTC+AGG	-	chr1_4:72815892-72815911	Msa0183840:CDS	55.0%
	GGGTGCTCCTTCAGGAAGAA+GGG	-	chr1_4:72815900-72815919	Msa0183840:CDS	55.0%
	ACCCAAAGTTGAGAGGGCTG+TGG	-	chr1_4:72814612-72814631	Msa0183840:three_prime_UTR	55.0%
	CGATCTCTTGAACCCACCAG+CGG	-	chr1_4:72814960-72814979	Msa0183840:three_prime_UTR	55.0%
!	CTTTTCTCAAGCTCCGCTGG+TGG	+	chr1_4:72814976-72814995	None:intergenic	55.0%
	CACCAGCGGAGCTTGAGAAA+AGG	-	chr1_4:72814974-72814993	Msa0183840:exon	55.0%
	GGTTTGCGGCAACTGTCAGA+CGG	-	chr1_4:72815836-72815855	Msa0183840:intron	55.0%
	ACGGTATTGTGCCAGCCAAC+CGG	-	chr1_4:72815855-72815874	Msa0183840:intron	55.0%
!!	TGTTAGCCTTGCTTTGCCGC+CGG	+	chr1_4:72815877-72815896	None:intergenic	55.0%
	CGGCAAAGCAAGGCTAACAG+AGG	-	chr1_4:72815878-72815897	Msa0183840:CDS	55.0%
!!	TAACAGAGGGGTGCTCCTTC+AGG	-	chr1_4:72815892-72815911	Msa0183840:CDS	55.0%
	GGGTGCTCCTTCAGGAAGAA+GGG	-	chr1_4:72815900-72815919	Msa0183840:CDS	55.0%
	GTATTGTGCCAGCCAACCGG+CGG	-	chr1_4:72815858-72815877	Msa0183840:intron	60.0%
!	GGGGTGCTCCTTCAGGAAGA+AGG	-	chr1_4:72815899-72815918	Msa0183840:CDS	60.0%
	GTATTGTGCCAGCCAACCGG+CGG	-	chr1_4:72815858-72815877	Msa0183840:intron	60.0%
!	GGGGTGCTCCTTCAGGAAGA+AGG	-	chr1_4:72815899-72815918	Msa0183840:CDS	60.0%
	AAGGGGCTGCGACTGCGAGA+AGG	+	chr1_4:72814770-72814789	None:intergenic	65.0%
!	TTGCTTTGCCGCCGGTTGGC+TGG	+	chr1_4:72815869-72815888	None:intergenic	65.0%
	AGCCAACCGGCGGCAAAGCA+AGG	-	chr1_4:72815868-72815887	Msa0183840:intron	65.0%
	AGCCTTGCTTTGCCGCCGGT+TGG	+	chr1_4:72815873-72815892	None:intergenic	65.0%
	AAGGGGCTGCGACTGCGAGA+AGG	+	chr1_4:72814770-72814789	None:intergenic	65.0%
!	TTGCTTTGCCGCCGGTTGGC+TGG	+	chr1_4:72815869-72815888	None:intergenic	65.0%
	AGCCAACCGGCGGCAAAGCA+AGG	-	chr1_4:72815868-72815887	Msa0183840:intron	65.0%
	AGCCTTGCTTTGCCGCCGGT+TGG	+	chr1_4:72815873-72815892	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	72814607	72816308	72814607	ID=Msa0183840;Name=Msa0183840
chr1_4	mRNA	72814607	72816308	72814607	ID=Msa0183840-mRNA-1;Parent=Msa0183840;Name=Msa0183840-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0.75\|0.8\|0.8\|0.75\|0.6\|5\|342\|99
chr1_4	exon	72814607	72814733	72814607	ID=Msa0183840-mRNA-1:exon:24751;Parent=Msa0183840-mRNA-1
chr1_4	exon	72814771	72815112	72814771	ID=Msa0183840-mRNA-1:exon:24750;Parent=Msa0183840-mRNA-1
chr1_4	exon	72815740	72815768	72815740	ID=Msa0183840-mRNA-1:exon:24749;Parent=Msa0183840-mRNA-1
chr1_4	exon	72815871	72815972	72815871	ID=Msa0183840-mRNA-1:exon:24748;Parent=Msa0183840-mRNA-1
chr1_4	exon	72816267	72816308	72816267	ID=Msa0183840-mRNA-1:exon:24747;Parent=Msa0183840-mRNA-1
chr1_4	CDS	72816267	72816308	72816267	ID=Msa0183840-mRNA-1:cds;Parent=Msa0183840-mRNA-1
chr1_4	CDS	72815871	72815972	72815871	ID=Msa0183840-mRNA-1:cds;Parent=Msa0183840-mRNA-1
chr1_4	CDS	72815740	72815768	72815740	ID=Msa0183840-mRNA-1:cds;Parent=Msa0183840-mRNA-1
chr1_4	CDS	72814986	72815112	72814986	ID=Msa0183840-mRNA-1:cds;Parent=Msa0183840-mRNA-1
chr1_4	three_prime_UTR	72814771	72814985	72814771	ID=Msa0183840-mRNA-1:three_prime_utr;Parent=Msa0183840-mRNA-1
chr1_4	three_prime_UTR	72814607	72814733	72814607	ID=Msa0183840-mRNA-1:three_prime_utr;Parent=Msa0183840-mRNA-1

Gene Sequence	>Msa0183840 ATGGGACCCAAAGTTGAGAGGGCTGTGGAATCAAATGTGGAGGTTCTCCAAAACGACATCGATCTCTTGAACCCACCAGCGGAGCTTGAGAAAAGGAAGCACAAGCTCAAGCGTCTCGTTCAATCTCCTAACTCATTCTTCATGGATGTCAAATGCCAAGGATGCTTCAACATAACTACTGTATTTAGCCACTCTCAAACAGTCGTGGTTTGCGGCAACTGTCAGACGGTATTGTGCCAGCCAACCGGCGGCAAAGCAAGGCTAACAGAGGGGTGCTCCTTCAGGAAGAAGGGTGATTAG
Protein sequence	>Msa0183840 MGPKVERAVESNVEVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLTEGCSFRKKGD*