AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1104560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1104560 AT3G24100.1 83.333 42 5 2 8 49 7 46 4.47e-14 60.5

Find 39 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATTATTATTATTGATA+TGG 0.221082 7_3:+42148185 Msa1104560:three_prime_UTR
ATAATTGGTGTTTCCTTGAA+TGG 0.333364 7_3:+42148339 Msa1104560:three_prime_UTR
AACCTTTCTCTACGTTGTTC+AGG 0.342009 7_3:-42147816 None:intergenic
ATATTCTAGTCGTCTTCTTT+TGG 0.352227 7_3:+42148268 Msa1104560:three_prime_UTR
ATTCTTGCCAGGCTTTCCTT+TGG 0.361006 7_3:-42147781 None:intergenic
GAGCAGTATATCAAACAATA+TGG 0.385171 7_3:-42148458 None:intergenic
ACTTGTATTGTATCTTTGTT+TGG 0.393839 7_3:+42148388 Msa1104560:three_prime_UTR
GGGGTAACTCAACAAATAAT+TGG 0.414690 7_3:+42148324 Msa1104560:three_prime_UTR
ACCTTTCTCTACGTTGTTCA+GGG 0.422756 7_3:-42147815 None:intergenic
AACAGCTAAGAAAGCAGGTC+AGG 0.430416 7_3:+42148114 Msa1104560:CDS
TATTGATATGGAGCTTGATA+AGG 0.435379 7_3:+42148197 Msa1104560:three_prime_UTR
TAATTGGTGTTTCCTTGAAT+GGG 0.439319 7_3:+42148340 Msa1104560:three_prime_UTR
GGAAAGCCTGGCAAGAATGA+TGG 0.443841 7_3:+42147786 Msa1104560:CDS
GGAGCTTGATAAGGTGTTGT+TGG 0.450986 7_3:+42148206 Msa1104560:three_prime_UTR
TGAAAGGGCTGCAGCTAGAG+TGG 0.451547 7_3:+42147752 Msa1104560:CDS
TCCTTGAATGGGATTGATGT+TGG 0.464881 7_3:+42148351 Msa1104560:three_prime_UTR
TCCAACATCAATCCCATTCA+AGG 0.466939 7_3:-42148352 None:intergenic
TAGGGATGCAAAGGCACTGC+AGG 0.480602 7_3:+42148087 Msa1104560:intron
GTCAACCCATCATTCTTGCC+AGG 0.482976 7_3:-42147792 None:intergenic
AAGAAAGCAGGTCAGGATGC+AGG 0.489533 7_3:+42148121 Msa1104560:CDS
AGAGAGAGAAAGATCGTGAA+AGG 0.508023 7_3:+42147736 Msa1104560:intron
GGTGGTTCCAAAGGAAAGCC+TGG 0.538122 7_3:+42147774 Msa1104560:CDS
GAGAGAGAAAGATCGTGAAA+GGG 0.539461 7_3:+42147737 Msa1104560:intron
TGTGTTTATTATTGTCATGT+GGG 0.545196 7_3:+42148304 Msa1104560:three_prime_UTR
GAGAAAACAGCTAAGAAAGC+AGG 0.550224 7_3:+42148109 Msa1104560:CDS
GAAAGCCTGGCAAGAATGAT+GGG 0.553580 7_3:+42147787 Msa1104560:CDS
CCCCTGAACAACGTAGAGAA+AGG 0.554850 7_3:+42147814 Msa1104560:CDS
ATGTGTTTATTATTGTCATG+TGG 0.555615 7_3:+42148303 Msa1104560:three_prime_UTR
AAAGATACAATACAAGTCAC+TGG 0.556311 7_3:-42148382 None:intergenic
GCTAGAGTGGGTGGTTCCAA+AGG 0.582727 7_3:+42147765 Msa1104560:CDS
GATGCAGGAGGGAATAATGC+AGG 0.589253 7_3:+42148136 Msa1104560:CDS
GAAAGGGCTGCAGCTAGAGT+GGG 0.604267 7_3:+42147753 Msa1104560:CDS
GTGTTTATTATTGTCATGTG+GGG 0.621451 7_3:+42148305 Msa1104560:three_prime_UTR
AGGGCTGCAGCTAGAGTGGG+TGG 0.622633 7_3:+42147756 Msa1104560:CDS
GTATATCAAACAATATGGCA+TGG 0.638264 7_3:-42148453 None:intergenic
AAAGCAGGTCAGGATGCAGG+AGG 0.647782 7_3:+42148124 Msa1104560:CDS
CCTTTCTCTACGTTGTTCAG+GGG 0.652678 7_3:-42147814 None:intergenic
AAGCAGGTCAGGATGCAGGA+GGG 0.655111 7_3:+42148125 Msa1104560:CDS
GCAGGAGGGAATAATGCAGG+TGG 0.659216 7_3:+42148139 Msa1104560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATATTATTATTATTGATA+TGG + chr7_3:42148185-42148204 Msa1104560:three_prime_UTR 10.0%
!! GAATATTATTATTATTGATA+TGG + chr7_3:42148185-42148204 Msa1104560:three_prime_UTR 10.0%
!!! AAATTGGTGATTAAATTTTT+TGG + chr7_3:42147035-42147054 Msa1104560:intron 15.0%
!! AGAATTAAACGAAAATTAAA+AGG - chr7_3:42147499-42147518 None:intergenic 15.0%
!!! AAATTGGTGATTAAATTTTT+TGG + chr7_3:42147035-42147054 Msa1104560:intron 15.0%
!! AGAATTAAACGAAAATTAAA+AGG - chr7_3:42147499-42147518 None:intergenic 15.0%
!! ACATTGAAACATTCATTAAT+CGG - chr7_3:42146756-42146775 None:intergenic 20.0%
!! ACCTACTATTATTCATTAAT+CGG - chr7_3:42146782-42146801 None:intergenic 20.0%
!!! ATAGTAGGTTTTTTTTTCTT+TGG + chr7_3:42146793-42146812 Msa1104560:intron 20.0%
!!! TAGACATAAAATAAGGTTTT+AGG - chr7_3:42147185-42147204 None:intergenic 20.0%
!! GAACAAATAGACATAAAATA+AGG - chr7_3:42147192-42147211 None:intergenic 20.0%
!!! TTTCTGTTTTCAATTTTCTA+GGG + chr7_3:42147411-42147430 Msa1104560:intron 20.0%
!! TCATTAATTCTCGTTAATTT+AGG + chr7_3:42147519-42147538 Msa1104560:intron 20.0%
!! CATTAATTCTCGTTAATTTA+GGG + chr7_3:42147520-42147539 Msa1104560:intron 20.0%
!! TTTATTGTTGCAAAGAAAAA+AGG - chr7_3:42147633-42147652 None:intergenic 20.0%
!! TTTATGATTTGAATCTGTTA+TGG + chr7_3:42147674-42147693 Msa1104560:intron 20.0%
!! TTATGATTTGAATCTGTTAT+GGG + chr7_3:42147675-42147694 Msa1104560:intron 20.0%
!!! TCATTTTCTGAAGTTATTAT+CGG + chr7_3:42147961-42147980 Msa1104560:intron 20.0%
!!! TGTCTTTTTCCTTATTTTTT+AGG + chr7_3:42148068-42148087 Msa1104560:intron 20.0%
!!! GTCTTTTTCCTTATTTTTTA+GGG + chr7_3:42148069-42148088 Msa1104560:intron 20.0%
!! ACATTGAAACATTCATTAAT+CGG - chr7_3:42146756-42146775 None:intergenic 20.0%
!! ACCTACTATTATTCATTAAT+CGG - chr7_3:42146782-42146801 None:intergenic 20.0%
!!! ATAGTAGGTTTTTTTTTCTT+TGG + chr7_3:42146793-42146812 Msa1104560:intron 20.0%
!!! TAGACATAAAATAAGGTTTT+AGG - chr7_3:42147185-42147204 None:intergenic 20.0%
!! GAACAAATAGACATAAAATA+AGG - chr7_3:42147192-42147211 None:intergenic 20.0%
!!! TTTCTGTTTTCAATTTTCTA+GGG + chr7_3:42147411-42147430 Msa1104560:intron 20.0%
!! TCATTAATTCTCGTTAATTT+AGG + chr7_3:42147519-42147538 Msa1104560:intron 20.0%
!! CATTAATTCTCGTTAATTTA+GGG + chr7_3:42147520-42147539 Msa1104560:intron 20.0%
!! TTTATTGTTGCAAAGAAAAA+AGG - chr7_3:42147633-42147652 None:intergenic 20.0%
!! TTTATGATTTGAATCTGTTA+TGG + chr7_3:42147674-42147693 Msa1104560:intron 20.0%
!! TTATGATTTGAATCTGTTAT+GGG + chr7_3:42147675-42147694 Msa1104560:intron 20.0%
!!! TCATTTTCTGAAGTTATTAT+CGG + chr7_3:42147961-42147980 Msa1104560:intron 20.0%
!!! TGTCTTTTTCCTTATTTTTT+AGG + chr7_3:42148068-42148087 Msa1104560:intron 20.0%
!!! GTCTTTTTCCTTATTTTTTA+GGG + chr7_3:42148069-42148088 Msa1104560:intron 20.0%
! CATTGAAACATTCATTAATC+GGG - chr7_3:42146755-42146774 None:intergenic 25.0%
! CCTACTATTATTCATTAATC+GGG - chr7_3:42146781-42146800 None:intergenic 25.0%
! ACATAACAGTTGATCAAAAT+TGG + chr7_3:42147019-42147038 Msa1104560:intron 25.0%
!!! TTGGTGATTAAATTTTTTGG+AGG + chr7_3:42147038-42147057 Msa1104560:intron 25.0%
!! GTTTCTGTTTTCAATTTTCT+AGG + chr7_3:42147410-42147429 Msa1104560:intron 25.0%
! ATTGAATAATGTAAAGACAC+CGG - chr7_3:42148004-42148023 None:intergenic 25.0%
! ATGTGTTTATTATTGTCATG+TGG + chr7_3:42148303-42148322 Msa1104560:three_prime_UTR 25.0%
! TGTGTTTATTATTGTCATGT+GGG + chr7_3:42148304-42148323 Msa1104560:three_prime_UTR 25.0%
! ACTTGTATTGTATCTTTGTT+TGG + chr7_3:42148388-42148407 Msa1104560:three_prime_UTR 25.0%
!! CCAATTTGATGAATTTTTCA+TGG - chr7_3:42146671-42146690 None:intergenic 25.0%
! CATTGAAACATTCATTAATC+GGG - chr7_3:42146755-42146774 None:intergenic 25.0%
! CCTACTATTATTCATTAATC+GGG - chr7_3:42146781-42146800 None:intergenic 25.0%
! ACATAACAGTTGATCAAAAT+TGG + chr7_3:42147019-42147038 Msa1104560:intron 25.0%
!!! TTGGTGATTAAATTTTTTGG+AGG + chr7_3:42147038-42147057 Msa1104560:intron 25.0%
!! GTTTCTGTTTTCAATTTTCT+AGG + chr7_3:42147410-42147429 Msa1104560:intron 25.0%
! ATTGAATAATGTAAAGACAC+CGG - chr7_3:42148004-42148023 None:intergenic 25.0%
! ATGTGTTTATTATTGTCATG+TGG + chr7_3:42148303-42148322 Msa1104560:three_prime_UTR 25.0%
! TGTGTTTATTATTGTCATGT+GGG + chr7_3:42148304-42148323 Msa1104560:three_prime_UTR 25.0%
! ACTTGTATTGTATCTTTGTT+TGG + chr7_3:42148388-42148407 Msa1104560:three_prime_UTR 25.0%
CCCGATTAATGAATAATAGT+AGG + chr7_3:42146778-42146797 Msa1104560:intron 30.0%
!!! GTAGGTTTTTTTTTCTTTGG+TGG + chr7_3:42146796-42146815 Msa1104560:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr7_3:42146844-42146863 None:intergenic 30.0%
AGAAGAAATTATAGAGAGAG+AGG - chr7_3:42147264-42147283 None:intergenic 30.0%
AAAAGTGGAAAATTGAGAAG+AGG - chr7_3:42147352-42147371 None:intergenic 30.0%
TAGCGAATTAAAGAGAAAAG+TGG - chr7_3:42147367-42147386 None:intergenic 30.0%
! ATTGATTCTTCAACAACGAA+GGG - chr7_3:42147457-42147476 None:intergenic 30.0%
TTTGAATCTGTTATGGGTAT+TGG + chr7_3:42147681-42147700 Msa1104560:intron 30.0%
!! ATTTAACTTTGAAGCTAACG+CGG + chr7_3:42147708-42147727 Msa1104560:intron 30.0%
CTTTGCATCCCTAAAAAATA+AGG - chr7_3:42148080-42148099 None:intergenic 30.0%
!!! CTTATTTTTTAGGGATGCAA+AGG + chr7_3:42148078-42148097 Msa1104560:intron 30.0%
TATTGATATGGAGCTTGATA+AGG + chr7_3:42148197-42148216 Msa1104560:three_prime_UTR 30.0%
!!! TTGTTGGTTTTAGACATTTG+TGG + chr7_3:42148222-42148241 Msa1104560:three_prime_UTR 30.0%
! ATATTCTAGTCGTCTTCTTT+TGG + chr7_3:42148268-42148287 Msa1104560:three_prime_UTR 30.0%
GTGTTTATTATTGTCATGTG+GGG + chr7_3:42148305-42148324 Msa1104560:three_prime_UTR 30.0%
! ATAATTGGTGTTTCCTTGAA+TGG + chr7_3:42148339-42148358 Msa1104560:three_prime_UTR 30.0%
! TAATTGGTGTTTCCTTGAAT+GGG + chr7_3:42148340-42148359 Msa1104560:three_prime_UTR 30.0%
AAAGATACAATACAAGTCAC+TGG - chr7_3:42148385-42148404 None:intergenic 30.0%
GTATATCAAACAATATGGCA+TGG - chr7_3:42148456-42148475 None:intergenic 30.0%
GAGCAGTATATCAAACAATA+TGG - chr7_3:42148461-42148480 None:intergenic 30.0%
CCCGATTAATGAATAATAGT+AGG + chr7_3:42146778-42146797 Msa1104560:intron 30.0%
!!! GTAGGTTTTTTTTTCTTTGG+TGG + chr7_3:42146796-42146815 Msa1104560:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr7_3:42146844-42146863 None:intergenic 30.0%
AGAAGAAATTATAGAGAGAG+AGG - chr7_3:42147264-42147283 None:intergenic 30.0%
AAAAGTGGAAAATTGAGAAG+AGG - chr7_3:42147352-42147371 None:intergenic 30.0%
TAGCGAATTAAAGAGAAAAG+TGG - chr7_3:42147367-42147386 None:intergenic 30.0%
! ATTGATTCTTCAACAACGAA+GGG - chr7_3:42147457-42147476 None:intergenic 30.0%
TTTGAATCTGTTATGGGTAT+TGG + chr7_3:42147681-42147700 Msa1104560:intron 30.0%
!! ATTTAACTTTGAAGCTAACG+CGG + chr7_3:42147708-42147727 Msa1104560:intron 30.0%
CTTTGCATCCCTAAAAAATA+AGG - chr7_3:42148080-42148099 None:intergenic 30.0%
!!! CTTATTTTTTAGGGATGCAA+AGG + chr7_3:42148078-42148097 Msa1104560:intron 30.0%
TATTGATATGGAGCTTGATA+AGG + chr7_3:42148197-42148216 Msa1104560:three_prime_UTR 30.0%
!!! TTGTTGGTTTTAGACATTTG+TGG + chr7_3:42148222-42148241 Msa1104560:three_prime_UTR 30.0%
! ATATTCTAGTCGTCTTCTTT+TGG + chr7_3:42148268-42148287 Msa1104560:three_prime_UTR 30.0%
GTGTTTATTATTGTCATGTG+GGG + chr7_3:42148305-42148324 Msa1104560:three_prime_UTR 30.0%
! ATAATTGGTGTTTCCTTGAA+TGG + chr7_3:42148339-42148358 Msa1104560:three_prime_UTR 30.0%
! TAATTGGTGTTTCCTTGAAT+GGG + chr7_3:42148340-42148359 Msa1104560:three_prime_UTR 30.0%
AAAGATACAATACAAGTCAC+TGG - chr7_3:42148385-42148404 None:intergenic 30.0%
GTATATCAAACAATATGGCA+TGG - chr7_3:42148456-42148475 None:intergenic 30.0%
GAGCAGTATATCAAACAATA+TGG - chr7_3:42148461-42148480 None:intergenic 30.0%
CTTGAAGCTTATGTTGATCT+TGG - chr7_3:42146709-42146728 None:intergenic 35.0%
!!! GGTTTTTTTTTCTTTGGTGG+TGG + chr7_3:42146799-42146818 Msa1104560:intron 35.0%
!!! TTTTTTTCTTTGGTGGTGGT+TGG + chr7_3:42146803-42146822 Msa1104560:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr7_3:42146839-42146858 None:intergenic 35.0%
! AATCTGTTTTCGCGTACAAA+AGG - chr7_3:42147133-42147152 None:intergenic 35.0%
GAAATTATAGAGAGAGAGGT+GGG - chr7_3:42147260-42147279 None:intergenic 35.0%
AGAAATTATAGAGAGAGAGG+TGG - chr7_3:42147261-42147280 None:intergenic 35.0%
TGCATTCTCTCTCTTTAATC+AGG + chr7_3:42147313-42147332 Msa1104560:intron 35.0%
ATTGAGAAGAGGAAAAAGAG+AGG - chr7_3:42147341-42147360 None:intergenic 35.0%
! GATTGATTCTTCAACAACGA+AGG - chr7_3:42147458-42147477 None:intergenic 35.0%
!! AATCTGTTATGGGTATTGGT+TGG + chr7_3:42147685-42147704 Msa1104560:intron 35.0%
! ACACATTCGTTAAGAAGTGT+CGG - chr7_3:42147880-42147899 None:intergenic 35.0%
! CAAATGTGTAGGTGTCATAT+CGG - chr7_3:42147925-42147944 None:intergenic 35.0%
ATGACACCTACACATTTGAT+TGG + chr7_3:42147927-42147946 Msa1104560:intron 35.0%
CTCAATCCAATCAAATGTGT+AGG - chr7_3:42147936-42147955 None:intergenic 35.0%
GGGGTAACTCAACAAATAAT+TGG + chr7_3:42148324-42148343 Msa1104560:three_prime_UTR 35.0%
CTTGAAGCTTATGTTGATCT+TGG - chr7_3:42146709-42146728 None:intergenic 35.0%
!!! GGTTTTTTTTTCTTTGGTGG+TGG + chr7_3:42146799-42146818 Msa1104560:intron 35.0%
!!! TTTTTTTCTTTGGTGGTGGT+TGG + chr7_3:42146803-42146822 Msa1104560:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr7_3:42146839-42146858 None:intergenic 35.0%
! AATCTGTTTTCGCGTACAAA+AGG - chr7_3:42147133-42147152 None:intergenic 35.0%
GAAATTATAGAGAGAGAGGT+GGG - chr7_3:42147260-42147279 None:intergenic 35.0%
AGAAATTATAGAGAGAGAGG+TGG - chr7_3:42147261-42147280 None:intergenic 35.0%
TGCATTCTCTCTCTTTAATC+AGG + chr7_3:42147313-42147332 Msa1104560:intron 35.0%
ATTGAGAAGAGGAAAAAGAG+AGG - chr7_3:42147341-42147360 None:intergenic 35.0%
! GATTGATTCTTCAACAACGA+AGG - chr7_3:42147458-42147477 None:intergenic 35.0%
!! AATCTGTTATGGGTATTGGT+TGG + chr7_3:42147685-42147704 Msa1104560:intron 35.0%
! ACACATTCGTTAAGAAGTGT+CGG - chr7_3:42147880-42147899 None:intergenic 35.0%
! CAAATGTGTAGGTGTCATAT+CGG - chr7_3:42147925-42147944 None:intergenic 35.0%
ATGACACCTACACATTTGAT+TGG + chr7_3:42147927-42147946 Msa1104560:intron 35.0%
CTCAATCCAATCAAATGTGT+AGG - chr7_3:42147936-42147955 None:intergenic 35.0%
GGGGTAACTCAACAAATAAT+TGG + chr7_3:42148324-42148343 Msa1104560:three_prime_UTR 35.0%
GCATAAAATATGCAAGGTCC+GGG - chr7_3:42146838-42146857 None:intergenic 40.0%
! TGAGCATAGCTTAGTTGGTA+AGG - chr7_3:42146866-42146885 None:intergenic 40.0%
TTGAAGATTCGTGAACAGCT+TGG - chr7_3:42147221-42147240 None:intergenic 40.0%
GAGAGGTGGGAAACTTTATT+TGG - chr7_3:42147247-42147266 None:intergenic 40.0%
TTTCACGATCTTTCTCTCTC+TGG - chr7_3:42147737-42147756 None:intergenic 40.0%
AGAGAGAGAAAGATCGTGAA+AGG + chr7_3:42147736-42147755 Msa1104560:intron 40.0%
GAGAGAGAAAGATCGTGAAA+GGG + chr7_3:42147737-42147756 Msa1104560:intron 40.0%
ACCTTTCTCTACGTTGTTCA+GGG - chr7_3:42147818-42147837 None:intergenic 40.0%
AACCTTTCTCTACGTTGTTC+AGG - chr7_3:42147819-42147838 None:intergenic 40.0%
!! TGAAGTTATTATCGGTGTCG+TGG + chr7_3:42147969-42147988 Msa1104560:intron 40.0%
GAGAAAACAGCTAAGAAAGC+AGG + chr7_3:42148109-42148128 Msa1104560:CDS 40.0%
TGCAGGTGGAAGCAAAAAAT+AGG + chr7_3:42148153-42148172 Msa1104560:CDS 40.0%
TCCTTGAATGGGATTGATGT+TGG + chr7_3:42148351-42148370 Msa1104560:three_prime_UTR 40.0%
TCCAACATCAATCCCATTCA+AGG - chr7_3:42148355-42148374 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - chr7_3:42146838-42146857 None:intergenic 40.0%
! TGAGCATAGCTTAGTTGGTA+AGG - chr7_3:42146866-42146885 None:intergenic 40.0%
TTGAAGATTCGTGAACAGCT+TGG - chr7_3:42147221-42147240 None:intergenic 40.0%
GAGAGGTGGGAAACTTTATT+TGG - chr7_3:42147247-42147266 None:intergenic 40.0%
TTTCACGATCTTTCTCTCTC+TGG - chr7_3:42147737-42147756 None:intergenic 40.0%
AGAGAGAGAAAGATCGTGAA+AGG + chr7_3:42147736-42147755 Msa1104560:intron 40.0%
GAGAGAGAAAGATCGTGAAA+GGG + chr7_3:42147737-42147756 Msa1104560:intron 40.0%
ACCTTTCTCTACGTTGTTCA+GGG - chr7_3:42147818-42147837 None:intergenic 40.0%
AACCTTTCTCTACGTTGTTC+AGG - chr7_3:42147819-42147838 None:intergenic 40.0%
!! TGAAGTTATTATCGGTGTCG+TGG + chr7_3:42147969-42147988 Msa1104560:intron 40.0%
GAGAAAACAGCTAAGAAAGC+AGG + chr7_3:42148109-42148128 Msa1104560:CDS 40.0%
TGCAGGTGGAAGCAAAAAAT+AGG + chr7_3:42148153-42148172 Msa1104560:CDS 40.0%
TCCTTGAATGGGATTGATGT+TGG + chr7_3:42148351-42148370 Msa1104560:three_prime_UTR 40.0%
TCCAACATCAATCCCATTCA+AGG - chr7_3:42148355-42148374 None:intergenic 40.0%
CCTCATGAGCATAGCTTAGT+TGG - chr7_3:42146871-42146890 None:intergenic 45.0%
CCAACTAAGCTATGCTCATG+AGG + chr7_3:42146868-42146887 Msa1104560:intron 45.0%
ATTCTTGCCAGGCTTTCCTT+TGG - chr7_3:42147784-42147803 None:intergenic 45.0%
GAAAGCCTGGCAAGAATGAT+GGG + chr7_3:42147787-42147806 Msa1104560:CDS 45.0%
CCTTTCTCTACGTTGTTCAG+GGG - chr7_3:42147817-42147836 None:intergenic 45.0%
!! TATTATCGGTGTCGTGGTGT+CGG + chr7_3:42147975-42147994 Msa1104560:intron 45.0%
AACAGCTAAGAAAGCAGGTC+AGG + chr7_3:42148114-42148133 Msa1104560:CDS 45.0%
!! GGAGCTTGATAAGGTGTTGT+TGG + chr7_3:42148206-42148225 Msa1104560:three_prime_UTR 45.0%
CCTCATGAGCATAGCTTAGT+TGG - chr7_3:42146871-42146890 None:intergenic 45.0%
CCAACTAAGCTATGCTCATG+AGG + chr7_3:42146868-42146887 Msa1104560:intron 45.0%
ATTCTTGCCAGGCTTTCCTT+TGG - chr7_3:42147784-42147803 None:intergenic 45.0%
GAAAGCCTGGCAAGAATGAT+GGG + chr7_3:42147787-42147806 Msa1104560:CDS 45.0%
CCTTTCTCTACGTTGTTCAG+GGG - chr7_3:42147817-42147836 None:intergenic 45.0%
!! TATTATCGGTGTCGTGGTGT+CGG + chr7_3:42147975-42147994 Msa1104560:intron 45.0%
AACAGCTAAGAAAGCAGGTC+AGG + chr7_3:42148114-42148133 Msa1104560:CDS 45.0%
!! GGAGCTTGATAAGGTGTTGT+TGG + chr7_3:42148206-42148225 Msa1104560:three_prime_UTR 45.0%
!!! AAAAAAAAAGTTTTTTTTTT+TGG + chr7_3:42147650-42147669 Msa1104560:intron 5.0%
!!! AAAAAAAAGTTTTTTTTTTT+GGG + chr7_3:42147651-42147670 Msa1104560:intron 5.0%
!!! AAAAAAAAAGTTTTTTTTTT+TGG + chr7_3:42147650-42147669 Msa1104560:intron 5.0%
!!! AAAAAAAAGTTTTTTTTTTT+GGG + chr7_3:42147651-42147670 Msa1104560:intron 5.0%
! GGTGGTTGGAGTTTGAAACC+CGG + chr7_3:42146817-42146836 Msa1104560:intron 50.0%
GGAAAGCCTGGCAAGAATGA+TGG + chr7_3:42147786-42147805 Msa1104560:CDS 50.0%
GTCAACCCATCATTCTTGCC+AGG - chr7_3:42147795-42147814 None:intergenic 50.0%
CCCCTGAACAACGTAGAGAA+AGG + chr7_3:42147814-42147833 Msa1104560:CDS 50.0%
AAGAAAGCAGGTCAGGATGC+AGG + chr7_3:42148121-42148140 Msa1104560:CDS 50.0%
GATGCAGGAGGGAATAATGC+AGG + chr7_3:42148136-42148155 Msa1104560:CDS 50.0%
! GGTGGTTGGAGTTTGAAACC+CGG + chr7_3:42146817-42146836 Msa1104560:intron 50.0%
GGAAAGCCTGGCAAGAATGA+TGG + chr7_3:42147786-42147805 Msa1104560:CDS 50.0%
GTCAACCCATCATTCTTGCC+AGG - chr7_3:42147795-42147814 None:intergenic 50.0%
CCCCTGAACAACGTAGAGAA+AGG + chr7_3:42147814-42147833 Msa1104560:CDS 50.0%
AAGAAAGCAGGTCAGGATGC+AGG + chr7_3:42148121-42148140 Msa1104560:CDS 50.0%
GATGCAGGAGGGAATAATGC+AGG + chr7_3:42148136-42148155 Msa1104560:CDS 50.0%
TGAAAGGGCTGCAGCTAGAG+TGG + chr7_3:42147752-42147771 Msa1104560:CDS 55.0%
GAAAGGGCTGCAGCTAGAGT+GGG + chr7_3:42147753-42147772 Msa1104560:CDS 55.0%
GCTAGAGTGGGTGGTTCCAA+AGG + chr7_3:42147765-42147784 Msa1104560:CDS 55.0%
GGTGGTTCCAAAGGAAAGCC+TGG + chr7_3:42147774-42147793 Msa1104560:CDS 55.0%
!! TAGGGATGCAAAGGCACTGC+AGG + chr7_3:42148087-42148106 Msa1104560:intron 55.0%
AAAGCAGGTCAGGATGCAGG+AGG + chr7_3:42148124-42148143 Msa1104560:CDS 55.0%
AAGCAGGTCAGGATGCAGGA+GGG + chr7_3:42148125-42148144 Msa1104560:CDS 55.0%
GCAGGAGGGAATAATGCAGG+TGG + chr7_3:42148139-42148158 Msa1104560:CDS 55.0%
TGAAAGGGCTGCAGCTAGAG+TGG + chr7_3:42147752-42147771 Msa1104560:CDS 55.0%
GAAAGGGCTGCAGCTAGAGT+GGG + chr7_3:42147753-42147772 Msa1104560:CDS 55.0%
GCTAGAGTGGGTGGTTCCAA+AGG + chr7_3:42147765-42147784 Msa1104560:CDS 55.0%
GGTGGTTCCAAAGGAAAGCC+TGG + chr7_3:42147774-42147793 Msa1104560:CDS 55.0%
!! TAGGGATGCAAAGGCACTGC+AGG + chr7_3:42148087-42148106 Msa1104560:intron 55.0%
AAAGCAGGTCAGGATGCAGG+AGG + chr7_3:42148124-42148143 Msa1104560:CDS 55.0%
AAGCAGGTCAGGATGCAGGA+GGG + chr7_3:42148125-42148144 Msa1104560:CDS 55.0%
GCAGGAGGGAATAATGCAGG+TGG + chr7_3:42148139-42148158 Msa1104560:CDS 55.0%
AGGGCTGCAGCTAGAGTGGG+TGG + chr7_3:42147756-42147775 Msa1104560:CDS 65.0%
!! GGTGTCGTGGTGTCGGTGTC+CGG + chr7_3:42147982-42148001 Msa1104560:intron 65.0%
AGGGCTGCAGCTAGAGTGGG+TGG + chr7_3:42147756-42147775 Msa1104560:CDS 65.0%
!! GGTGTCGTGGTGTCGGTGTC+CGG + chr7_3:42147982-42148001 Msa1104560:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 42146670 42148491 42146670 ID=Msa1104560;Name=Msa1104560
chr7_3 mRNA 42146670 42148491 42146670 ID=Msa1104560-mRNA-1;Parent=Msa1104560;Name=Msa1104560-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.33|0.66|1|1|3|317|67
chr7_3 exon 42146670 42146690 42146670 ID=Msa1104560-mRNA-1:exon:8548;Parent=Msa1104560-mRNA-1
chr7_3 exon 42147738 42147835 42147738 ID=Msa1104560-mRNA-1:exon:8549;Parent=Msa1104560-mRNA-1
chr7_3 exon 42148090 42148491 42148090 ID=Msa1104560-mRNA-1:exon:8550;Parent=Msa1104560-mRNA-1
chr7_3 CDS 42146670 42146690 42146670 ID=Msa1104560-mRNA-1:cds;Parent=Msa1104560-mRNA-1
chr7_3 CDS 42147738 42147835 42147738 ID=Msa1104560-mRNA-1:cds;Parent=Msa1104560-mRNA-1
chr7_3 CDS 42148090 42148174 42148090 ID=Msa1104560-mRNA-1:cds;Parent=Msa1104560-mRNA-1
chr7_3 three_prime_UTR 42148175 42148491 42148175 ID=Msa1104560-mRNA-1:three_prime_utr;Parent=Msa1104560-mRNA-1
Gene Sequence

>Msa1104560

ATGAAAAATTCATCAAATTGGAGAGAGAAAGATCGTGAAAGGGCTGCAGCTAGAGTGGGTGGTTCCAAAGGAAAGCCTGGCAAGAATGATGGGTTGACCCCTGAACAACGTAGAGAAAGGGATGCAAAGGCACTGCAGGAGAAAACAGCTAAGAAAGCAGGTCAGGATGCAGGAGGGAATAATGCAGGTGGAAGCAAAAAATAG

Protein sequence

>Msa1104560

MKNSSNWREKDRERAAARVGGSKGKPGKNDGLTPEQRRERDAKALQEKTAKKAGQDAGGNNAGGSKK*