AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607910 MtrunA17_Chr4g0039731 97.507 682 15 2 1 682 124 803 0.0 1351
Msa0607910 MtrunA17_Chr3g0086081 35.526 228 135 2 61 284 7 226 3.47e-36 139
Msa0607910 MtrunA17_Chr1g0168171 59.259 81 31 2 112 191 2 81 5.97e-24 96.3
Msa0607910 MtrunA17_Chr1g0176161 28.324 346 218 10 35 357 148 486 2.17e-23 104
Msa0607910 MtrunA17_Chr8g0345501 23.875 289 199 5 63 348 429 699 8.67e-23 103
Msa0607910 MtrunA17_Chr4g0025081 31.835 267 153 9 37 281 223 482 1.72e-21 98.6
Msa0607910 MtrunA17_Chr4g0010341 32.374 139 90 1 43 177 185 323 1.70e-18 89.0
Msa0607910 MtrunA17_Chr1g0179631 28.936 235 162 3 56 285 526 760 2.26e-18 89.7
Msa0607910 MtrunA17_Chr2g0295581 44.565 92 49 1 54 145 48 137 2.08e-17 84.7
Msa0607910 MtrunA17_Chr7g0245281 46.988 83 42 1 223 305 24 104 3.93e-16 74.7
Msa0607910 MtrunA17_Chr2g0322881 25.000 328 219 10 41 352 331 647 2.40e-12 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 208 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCATCCAGTCACACTTTC+AGG 0.156242 4_2:-54919670 Msa0607910:CDS
AATTACGATTGGTCTTATTT+TGG 0.195049 4_2:+54919320 None:intergenic
CTATCTCTTGCATCCCGTTC+TGG 0.201986 4_2:+54918903 None:intergenic
GTCTGAAACTTGGAGAGTTT+TGG 0.224219 4_2:+54919901 None:intergenic
CAAAGAATCATCAAGCTAAA+AGG 0.225169 4_2:-54917674 Msa0607910:CDS
CAAAGAATCATCAAGCTAAA+AGG 0.225169 4_2:-54917965 Msa0607910:CDS
CAAAGCAACATCATGCTAAA+AGG 0.228413 4_2:-54918109 Msa0607910:CDS
CTTTCAGCTTGATGATTCTT+TGG 0.237633 4_2:+54917822 None:intergenic
CAAAGCAGCGTCAAGCTAAA+AGG 0.248224 4_2:-54918178 Msa0607910:CDS
CTTGTGGTTTATATTTAAAT+TGG 0.282077 4_2:-54917480 Msa0607910:three_prime_UTR
ATCCTCTGTATGAGGAGTTT+TGG 0.284042 4_2:+54919943 None:intergenic
CTTATACGGCCCTGTGGTCT+AGG 0.301558 4_2:-54919854 Msa0607910:CDS
GACGAAGACAATTTGTTAGA+TGG 0.302419 4_2:-54917924 Msa0607910:CDS
TTGGCTAGAGATCTTTATAA+AGG 0.321950 4_2:+54919339 None:intergenic
GAATATTGGTGGAAGTTGTT+TGG 0.327898 4_2:-54919606 Msa0607910:CDS
CTTTCAGCTTGATGATGCTT+TGG 0.336556 4_2:+54918248 None:intergenic
GTGCTGCGGCAGCCTCTTTA+CGG 0.338605 4_2:+54918696 None:intergenic
AATATTGGTGGAAGTTGTTT+GGG 0.347492 4_2:-54919605 Msa0607910:CDS
AAAGAATCATCAAGCTAAAA+GGG 0.374571 4_2:-54917673 Msa0607910:CDS
AAAGAATCATCAAGCTAAAA+GGG 0.374571 4_2:-54917964 Msa0607910:CDS
GAAACAACATTATCAGCATT+TGG 0.377989 4_2:-54918612 Msa0607910:CDS
CAATATTCCCTTACATCCTC+TGG 0.378318 4_2:+54919621 None:intergenic
TATCTCTTGCATCCCGTTCT+GGG 0.384815 4_2:+54918904 None:intergenic
CATTCTGCTTGTCTGAAACT+TGG 0.385118 4_2:+54919891 None:intergenic
TTCAGGGTCCTTTCTATCGC+TGG 0.387154 4_2:-54919653 Msa0607910:CDS
AAGGAGGTACAAACACAAAA+TGG 0.387875 4_2:-54918935 Msa0607910:CDS
GAAAGAAACATCTAGCTCTA+AGG 0.395879 4_2:-54918394 Msa0607910:CDS
GGAGGCTGCTGCAGCACGTC+AGG 0.396719 4_2:-54918669 Msa0607910:CDS
CAGAGGATGTAAGGGAATAT+TGG 0.403849 4_2:-54919620 Msa0607910:CDS
GTCATTACCGTAGTTGAGTT+TGG 0.405893 4_2:-54917590 Msa0607910:exon
AACGGGATGCAAGAGATAGA+TGG 0.408583 4_2:-54918899 Msa0607910:CDS
TGATCACACCCACCACTATA+AGG 0.408691 4_2:+54918749 None:intergenic
AAGAGTCGAGGTCGGTGTTA+TGG 0.410049 4_2:-54918836 Msa0607910:CDS
GTGAGACCCCAGAGGATGTA+AGG 0.413212 4_2:-54919629 Msa0607910:CDS
AGAGGCTGCCGCAGCACATC+AGG 0.413600 4_2:-54918690 Msa0607910:CDS
GTTTCGACTCAGCTGCCTCC+TGG 0.416729 4_2:+54918630 None:intergenic
GGAGGAATCAGAAGAGGAGG+AGG 0.416759 4_2:-54919987 Msa0607910:CDS
ATAAAAGGAAGTCTGGCAAT+TGG 0.418430 4_2:-54919093 Msa0607910:CDS
TGCTTTGGTAAGACCCCGTC+TGG 0.419898 4_2:+54918053 None:intergenic
TATAAACCACAAGTTCAAAC+TGG 0.421652 4_2:+54917490 None:intergenic
TTAATGCAGGCTCAAGAACT+TGG 0.423789 4_2:-54919154 Msa0607910:intron
GGAGGCAGCCACAGCACGCC+AGG 0.425194 4_2:-54918648 Msa0607910:CDS
TGCTTTGGTAAAACCCCATC+TGG 0.426446 4_2:+54917762 None:intergenic
CGCAGGGGACGCCAATCAGC+AGG 0.428309 4_2:-54918506 Msa0607910:CDS
ATGGTAAGGCCTCCCAGAAC+GGG 0.431393 4_2:-54918916 Msa0607910:CDS
CTCTTTACGGACTGCATCAA+TGG 0.432826 4_2:+54918709 None:intergenic
GCTTGGGATCCTCGTGATCA+TGG 0.433534 4_2:-54919502 Msa0607910:CDS
AAAGAATCATCAAGCTGAAA+GGG 0.439093 4_2:-54917820 Msa0607910:CDS
AAAGCAACATCATGCTAAAA+GGG 0.442573 4_2:-54918108 Msa0607910:CDS
CTGATGGGAAGGTTCTTATA+CGG 0.442619 4_2:-54919868 Msa0607910:CDS
AAAGCAGCGTCAAGCTAAAA+GGG 0.443246 4_2:-54918177 Msa0607910:CDS
GCCACCCATAAAAGGAAGTC+TGG 0.448504 4_2:-54919100 Msa0607910:CDS
TAAAAGGAAGTCTGGCAATT+GGG 0.451077 4_2:-54919092 Msa0607910:CDS
GCTCTAGAGCGCCAATCAGC+AGG 0.461373 4_2:-54918554 Msa0607910:CDS
CAGACTTTGCTTTAAACCTC+CGG 0.461416 4_2:-54918808 Msa0607910:CDS
TTATTTCCAGTTTGAACTTG+TGG 0.463871 4_2:-54917496 Msa0607910:three_prime_UTR
CTCTCAAAAGTGAGGAAGAA+GGG 0.464033 4_2:-54919427 Msa0607910:CDS
ACGGTAATGACGACGGCGAC+GGG 0.464069 4_2:+54917602 None:intergenic
GCAGCAGCAGGCGCCGCGCT+AGG 0.466466 4_2:+54919702 None:intergenic
GAAGGGTCTTAATGCCCATT+GGG 0.467273 4_2:-54919371 Msa0607910:CDS
TTCGCTGACTCAGGAGTCTC+GGG 0.469281 4_2:-54918774 Msa0607910:CDS
ACGAAGACAATTTGTTAGAT+GGG 0.469400 4_2:-54917923 Msa0607910:CDS
CATCCTCACTATGATAATGA+TGG 0.471233 4_2:-54917867 Msa0607910:CDS
AAAGCATCATCAAGCTGAAA+GGG 0.476885 4_2:-54918246 Msa0607910:CDS
GCGTGTTTAATCGCAGCAGC+AGG 0.479484 4_2:+54919690 None:intergenic
GTCTCACTCCAGCGATAGAA+AGG 0.483175 4_2:+54919645 None:intergenic
GGCTGCTGCAGCACGTCAGG+AGG 0.484517 4_2:-54918666 Msa0607910:CDS
CTATGATGATGAGGATTCGC+TGG 0.489767 4_2:-54918282 Msa0607910:CDS
CTTCGCTGACTCAGGAGTCT+CGG 0.490441 4_2:-54918775 Msa0607910:CDS
TAATGACGACGGCGACGGGC+TGG 0.491841 4_2:+54917606 None:intergenic
AGAAGGGGACGAGACCTCAT+TGG 0.497085 4_2:-54919411 Msa0607910:CDS
TCTTCTGAATCCTCTGTATG+AGG 0.497193 4_2:+54919935 None:intergenic
GAGCCTTGCGGCCTGTGGTG+TGG 0.498769 4_2:+54919278 None:intergenic
ATTGGATATGTGAAGAGGCT+TGG 0.499061 4_2:-54919393 Msa0607910:CDS
GGAGGAGGAATCAGAAGAGG+AGG 0.501572 4_2:-54919972 Msa0607910:CDS
GGAAGGGTCTTAATGCCCAT+TGG 0.502764 4_2:-54919372 Msa0607910:CDS
CAAGTGCGAGTCAAGCTCGC+AGG 0.505729 4_2:-54918475 Msa0607910:CDS
CAAGTGTGAGTCAAGCTCGC+AGG 0.505729 4_2:-54918523 Msa0607910:CDS
GCCTTTACACGAATTACGAT+TGG 0.507806 4_2:+54919309 None:intergenic
AGCTGCCTCCTGGCGTGCTG+TGG 0.510431 4_2:+54918640 None:intergenic
GATATGTGAAGAGGCTTGGA+AGG 0.511244 4_2:-54919389 Msa0607910:CDS
TCAGACAAGCAGAATGCTGA+TGG 0.511382 4_2:-54919884 Msa0607910:CDS
ATCCTCACTATGATAATGAT+GGG 0.512412 4_2:-54917866 Msa0607910:CDS
CAAAGAATCATCAAGCTGAA+AGG 0.512957 4_2:-54917821 Msa0607910:CDS
AATATTCCCTTACATCCTCT+GGG 0.513122 4_2:+54919622 None:intergenic
CTAGATGTTTCTTTCTTCGA+CGG 0.513717 4_2:+54918402 None:intergenic
ACGGGATGCAAGAGATAGAT+GGG 0.515357 4_2:-54918898 Msa0607910:CDS
TTGTGAAAGCACCTGCTGAT+TGG 0.515650 4_2:+54918495 None:intergenic
AGAGGATTCAGAAGAGGAGG+AGG 0.520308 4_2:-54919927 Msa0607910:CDS
CTAAGAACTCGTCTAGTGAA+TGG 0.521135 4_2:+54918429 None:intergenic
ACCAATCGTAATTCGTGTAA+AGG 0.522365 4_2:-54919310 Msa0607910:CDS
AAAGGCTTCACCCTCCCAAT+GGG 0.525570 4_2:+54919357 None:intergenic
TGGTGTAACTTCGCTGACTC+AGG 0.525580 4_2:-54918783 Msa0607910:CDS
GGAGGAATCAGAAGAGGAGG+AGG 0.525843 4_2:-54919969 Msa0607910:CDS
AAGTGTGAGTCAAGCTCGCA+GGG 0.528888 4_2:-54918522 Msa0607910:CDS
ATGATGACGATTTGCCAGAC+GGG 0.529560 4_2:-54918067 Msa0607910:CDS
CAAAGCATCATCAAGCTGAA+AGG 0.530065 4_2:-54918247 Msa0607910:CDS
GCGAATCCTCGTCATTATCA+TGG 0.530875 4_2:+54918003 None:intergenic
TAAGACCTCGTCTAGTGAAT+CGG 0.531398 4_2:+54917629 None:intergenic
TTATACGGCCCTGTGGTCTA+GGG 0.531997 4_2:-54919853 Msa0607910:intron
ACGATGACGATTTGCCAGAT+GGG 0.532630 4_2:-54917776 Msa0607910:CDS
TTGTGAAAGCACCTGCTGAT+TGG 0.534635 4_2:+54918543 None:intergenic
AAGTGCGAGTCAAGCTCGCA+GGG 0.535151 4_2:-54918474 Msa0607910:CDS
CTTGGGATCCTCGTGATCAT+GGG 0.539317 4_2:-54919501 Msa0607910:CDS
TAAAGGCTTCACCCTCCCAA+TGG 0.540341 4_2:+54919356 None:intergenic
AGGATGTAAGGGAATATTGG+TGG 0.540950 4_2:-54919617 Msa0607910:CDS
GAAACTTGAATTGTGGAAAG+AGG 0.542708 4_2:-54918870 Msa0607910:CDS
TACGGTAATGACGACGGCGA+CGG 0.544466 4_2:+54917601 None:intergenic
GGCGGAGCAGTCCACACCAC+AGG 0.552096 4_2:-54919289 Msa0607910:CDS
TATAACTTACCCTAGACCAC+AGG 0.552243 4_2:+54919844 None:intergenic
CGATGACGATTTGCCAGATG+GGG 0.554351 4_2:-54917775 Msa0607910:CDS
CTCGGGAACCTTATAGTGGT+GGG 0.556218 4_2:-54918757 Msa0607910:CDS
TCTCGGGAACCTTATAGTGG+TGG 0.557452 4_2:-54918758 Msa0607910:CDS
GCTCTCAAAAGTGAGGAAGA+AGG 0.557493 4_2:-54919428 Msa0607910:CDS
CATTGATGCAGTCCGTAAAG+AGG 0.559031 4_2:-54918708 Msa0607910:CDS
TAATGCAGGCTCAAGAACTT+GGG 0.559518 4_2:-54919153 Msa0607910:intron
CGAAGACAATTTGTTAGATG+GGG 0.565203 4_2:-54917922 Msa0607910:CDS
GGGTCTTAATGCCCATTGGG+AGG 0.566029 4_2:-54919368 Msa0607910:CDS
GGCTGCCGCAGCACATCAGG+AGG 0.566647 4_2:-54918687 Msa0607910:CDS
GAGTCTCGGGAACCTTATAG+TGG 0.570097 4_2:-54918761 Msa0607910:CDS
GAATTGTGGAAAGAGGTTGC+TGG 0.573145 4_2:-54918863 Msa0607910:CDS
TACAGAGGATTCAGAAGAGG+AGG 0.573871 4_2:-54919930 Msa0607910:CDS
GGCAGCCACAGCACGCCAGG+AGG 0.574306 4_2:-54918645 Msa0607910:CDS
AATGGTAAGGCCTCCCAGAA+CGG 0.574382 4_2:-54918917 Msa0607910:CDS
GACGATGACGATTTGCCAGA+TGG 0.574633 4_2:-54917777 Msa0607910:CDS
TGATGAGGATTCACTAGATG+AGG 0.576767 4_2:-54918207 Msa0607910:CDS
AAGGACCCTGAAAGTGTGAC+TGG 0.578783 4_2:+54919664 None:intergenic
ATCAAAACCAAACTCAACTA+CGG 0.579654 4_2:+54917583 None:intergenic
CAAGCAGAATGCTGATGGGA+AGG 0.582859 4_2:-54919879 Msa0607910:CDS
GGTACAAACACAAAATGGTA+AGG 0.583099 4_2:-54918930 Msa0607910:CDS
CCGCAAGGCTCATGTTGATG+TGG 0.585666 4_2:-54919266 Msa0607910:CDS
AGCAGCCTCCTGATGTGCTG+CGG 0.589638 4_2:+54918682 None:intergenic
GAATCGGTGTCATCATAAAG+AGG 0.589843 4_2:+54917645 None:intergenic
TGAGACCCCAGAGGATGTAA+GGG 0.590171 4_2:-54919628 Msa0607910:CDS
TCAAGAACTTGGGCGGTCTG+TGG 0.591187 4_2:-54919143 Msa0607910:CDS
GCCATCCAGTCACACTTTCA+GGG 0.595008 4_2:-54919669 Msa0607910:CDS
TTGTAGGTGGGCTCCTAGCG+CGG 0.605332 4_2:-54919715 Msa0607910:intron
AACATGAGCCTTGCGGCCTG+TGG 0.606679 4_2:+54919273 None:intergenic
ACAATATCACGATCGTCTGA+AGG 0.608845 4_2:-54918954 Msa0607910:CDS
AGAGGAGGAGGAATCAGAAG+AGG 0.608992 4_2:-54919975 Msa0607910:CDS
TATGGAGGAATCAGAAGAGG+AGG 0.610115 4_2:-54919990 Msa0607910:CDS
AGTCCACACCACAGGCCGCA+AGG 0.611297 4_2:-54919281 Msa0607910:CDS
GGGCGACGAAACTTGAATTG+TGG 0.613873 4_2:-54918877 Msa0607910:CDS
ACATCCTCGCTACGATGATG+AGG 0.614505 4_2:-54918222 Msa0607910:CDS
ATATTGGTGGAAGTTGTTTG+GGG 0.616097 4_2:-54919604 Msa0607910:intron
TGTTGATGTGGCACTTAGCA+TGG 0.616336 4_2:-54919254 Msa0607910:intron
ACATTATCACTATGATGATG+AGG 0.618914 4_2:-54918291 Msa0607910:CDS
TTACATATGTTGTTTGAGAG+CGG 0.620785 4_2:+54919062 None:intergenic
GGTCTTAATGCCCATTGGGA+GGG 0.621508 4_2:-54919367 Msa0607910:CDS
TCCCAAAACTCCTCATACAG+AGG 0.621524 4_2:-54919945 Msa0607910:CDS
CAGATATGCTCTCAAAAGTG+AGG 0.622705 4_2:-54919435 Msa0607910:CDS
ACCTCATTGGATATGTGAAG+AGG 0.624423 4_2:-54919398 Msa0607910:CDS
TCCTCGTCATTATCATGGTG+AGG 0.625583 4_2:+54918008 None:intergenic
GATGATGACGATTTGCCAGA+CGG 0.628419 4_2:-54918068 Msa0607910:CDS
TCCTCATCATTATCATAGTG+AGG 0.630997 4_2:+54917717 None:intergenic
TTGATATACCCATGATCACG+AGG 0.631630 4_2:+54919493 None:intergenic
TGATGAGGATTCGCTACATG+AGG 0.633190 4_2:-54917703 Msa0607910:CDS
GCCTCTTCACATATCCAATG+AGG 0.635189 4_2:+54919397 None:intergenic
TCATACAGAGGATTCAGAAG+AGG 0.636032 4_2:-54919933 Msa0607910:CDS
TGATCATGCTATGCATCTAG+AGG 0.639265 4_2:-54918732 Msa0607910:CDS
TCCCCATCATTATCATAGTG+AGG 0.639323 4_2:+54917864 None:intergenic
CAGACAAGCAGAATGCTGAT+GGG 0.640959 4_2:-54919883 Msa0607910:CDS
AAGAATCATCAAGCTGAAAG+GGG 0.641028 4_2:-54917819 Msa0607910:CDS
TCATATGGAGGAATCAGAAG+AGG 0.642617 4_2:-54919993 None:intergenic
TGATGGGGATTCGTTACATG+AGG 0.644762 4_2:-54917850 Msa0607910:CDS
AAGCAACATCATGCTAAAAG+GGG 0.645171 4_2:-54918107 Msa0607910:CDS
ACAACATTATCAGCATTTGG+AGG 0.645179 4_2:-54918609 Msa0607910:CDS
AAGCATCATCAAGCTGAAAG+GGG 0.649585 4_2:-54918245 Msa0607910:CDS
ACCCTGAAAGTGTGACTGGA+TGG 0.650411 4_2:+54919668 None:intergenic
TCCTCACTATGATAATGATG+AGG 0.654946 4_2:-54917718 Msa0607910:CDS
CCACATCAACATGAGCCTTG+CGG 0.654991 4_2:+54919266 None:intergenic
CAAACTGGAAATAATTACCA+TGG 0.657081 4_2:+54917505 None:intergenic
CTCAACTACGGTAATGACGA+CGG 0.657330 4_2:+54917595 None:intergenic
ATATGTGAAGAGGCTTGGAA+GGG 0.657558 4_2:-54919388 Msa0607910:CDS
TGCAGGCTCAAGAACTTGGG+CGG 0.659117 4_2:-54919150 Msa0607910:intron
ATAACTTACCCTAGACCACA+GGG 0.660044 4_2:+54919845 None:intergenic
TTGTGGAAAGAGGTTGCTGG+TGG 0.660274 4_2:-54918860 Msa0607910:CDS
AAGAATCATCAAGCTAAAAG+GGG 0.661347 4_2:-54917672 Msa0607910:CDS
AAGAATCATCAAGCTAAAAG+GGG 0.661347 4_2:-54917963 Msa0607910:CDS
TCGTCATCATCGTCATAGTG+AGG 0.664947 4_2:+54918080 None:intergenic
CTCTTGCATCCCGTTCTGGG+AGG 0.665900 4_2:+54918907 None:intergenic
CTGGTGGAAAGAGTCGAGGT+CGG 0.666255 4_2:-54918844 Msa0607910:CDS
TCTCAAAAGTGAGGAAGAAG+GGG 0.667382 4_2:-54919426 Msa0607910:CDS
TGACGAGGATTCGCTACATG+AGG 0.668713 4_2:-54917994 Msa0607910:CDS
AAGCAGCGTCAAGCTAAAAG+GGG 0.671751 4_2:-54918176 Msa0607910:CDS
TTGTCTTCGTCATCATAGTG+AGG 0.672385 4_2:+54917936 None:intergenic
CGACGACGACTCTCTAGATG+AGG 0.674837 4_2:-54918138 Msa0607910:CDS
TCCTCACTATGATAATGATG+GGG 0.674907 4_2:-54917865 Msa0607910:CDS
GCGAAGTTACACCACGCCGG+AGG 0.675552 4_2:+54918792 None:intergenic
CGGGATGCAAGAGATAGATG+GGG 0.678097 4_2:-54918897 Msa0607910:CDS
GTTGCTGGTGGAAAGAGTCG+AGG 0.681260 4_2:-54918848 Msa0607910:CDS
AATCGTAATTCGTGTAAAGG+CGG 0.682791 4_2:-54919307 Msa0607910:CDS
TCATCGTCATCATCATAGTG+AGG 0.683389 4_2:+54917792 None:intergenic
GAATGGTCATCATCATAGCG+AGG 0.683926 4_2:+54918446 None:intergenic
ATATCACGATCGTCTGAAGG+AGG 0.686760 4_2:-54918951 Msa0607910:CDS
TCCTCACCATGATAATGACG+AGG 0.694396 4_2:-54918009 Msa0607910:CDS
GAATCCTCATCATCGTAGCG+AGG 0.696997 4_2:+54918218 None:intergenic
AGTGCGAGTCAAGCTCGCAG+GGG 0.697262 4_2:-54918473 Msa0607910:CDS
TTTGCTTTAAACCTCCGGCG+TGG 0.698945 4_2:-54918803 Msa0607910:CDS
AAGGTTCTTATACGGCCCTG+TGG 0.700616 4_2:-54919860 Msa0607910:CDS
TGATGACGATTTGCCAGACG+GGG 0.703928 4_2:-54918066 Msa0607910:CDS
TGACACCGATTCACTAGACG+AGG 0.704444 4_2:-54917634 Msa0607910:CDS
AGTACAGTACGTCAACACAA+AGG 0.713056 4_2:+54917529 None:intergenic
AGTGTGAGTCAAGCTCGCAG+GGG 0.725594 4_2:-54918521 Msa0607910:CDS
ATATTCCCTTACATCCTCTG+GGG 0.728189 4_2:+54919623 None:intergenic
TCAGCGAAGTTACACCACGC+CGG 0.737989 4_2:+54918789 None:intergenic
TCGCTGGAGTGAGACCCCAG+AGG 0.762521 4_2:-54919637 Msa0607910:CDS
GTTGACGTACTGTACTACCA+TGG 0.762714 4_2:-54917522 Msa0607910:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATATAAAAAATATAA+GGG + chr4_2:54918437-54918456 None:intergenic 0.0%
!! TATATAATATAAAAAATATA+AGG + chr4_2:54918438-54918457 None:intergenic 0.0%
!!! GTTGTTTTTTAATTTAATGC+AGG - chr4_2:54918298-54918317 Msa0607910:CDS 20.0%
!!! TGATATTGTTTCTAGAAAAA+AGG + chr4_2:54918500-54918519 None:intergenic 20.0%
!! CTTGTGGTTTATATTTAAAT+TGG - chr4_2:54919985-54920004 Msa0607910:CDS 20.0%
!!! ATTTAGTTTGGACTTTTTGT+AGG - chr4_2:54917734-54917753 Msa0607910:CDS 25.0%
! TAACTAGTTATCGTTATGTA+GGG + chr4_2:54917920-54917939 None:intergenic 25.0%
!!! ACTAGTTAGATTCCTTTTTT+AGG - chr4_2:54917932-54917951 Msa0607910:CDS 25.0%
!!! AATTACGATTGGTCTTATTT+TGG + chr4_2:54918148-54918167 None:intergenic 25.0%
! AAACAACATATGTAAGTTGT+TGG - chr4_2:54918411-54918430 Msa0607910:CDS 25.0%
! CTCTTGAACAAAATGATATT+AGG - chr4_2:54918466-54918485 Msa0607910:CDS 25.0%
! AAAGAATCATCAAGCTAAAA+GGG - chr4_2:54919501-54919520 Msa0607910:CDS 25.0%
! AAAGAATCATCAAGCTAAAA+GGG - chr4_2:54919501-54919520 Msa0607910:CDS 25.0%
AATATTGGTGGAAGTTGTTT+GGG - chr4_2:54917860-54917879 Msa0607910:CDS 30.0%
AACTAGTTATCGTTATGTAG+GGG + chr4_2:54917919-54917938 None:intergenic 30.0%
CTAACTAGTTATCGTTATGT+AGG + chr4_2:54917921-54917940 None:intergenic 30.0%
AAGCAATCTTGTCCTAAAAA+AGG + chr4_2:54917947-54917966 None:intergenic 30.0%
!!! TTTTTTAGGACAAGATTGCT+TGG - chr4_2:54917946-54917965 Msa0607910:CDS 30.0%
!!! TTTTTAGGACAAGATTGCTT+GGG - chr4_2:54917947-54917966 Msa0607910:CDS 30.0%
AAAAAGACGTTTCAAACAAG+AGG - chr4_2:54917993-54918012 Msa0607910:CDS 30.0%
TTGGCTAGAGATCTTTATAA+AGG + chr4_2:54918129-54918148 None:intergenic 30.0%
! TTACATATGTTGTTTGAGAG+CGG + chr4_2:54918406-54918425 None:intergenic 30.0%
GAAACAACATTATCAGCATT+TGG - chr4_2:54918853-54918872 Msa0607910:CDS 30.0%
! ACATTATCACTATGATGATG+AGG - chr4_2:54919174-54919193 Msa0607910:intron 30.0%
AAAGCAACATCATGCTAAAA+GGG - chr4_2:54919357-54919376 Msa0607910:CDS 30.0%
!!! CTTTTAGCTTGATGATTCTT+TGG + chr4_2:54919502-54919521 None:intergenic 30.0%
CAAAGAATCATCAAGCTAAA+AGG - chr4_2:54919500-54919519 Msa0607910:CDS 30.0%
AAGAATCATCAAGCTAAAAG+GGG - chr4_2:54919502-54919521 Msa0607910:CDS 30.0%
!! ACGAAGACAATTTGTTAGAT+GGG - chr4_2:54919542-54919561 Msa0607910:intron 30.0%
! ATCCTCACTATGATAATGAT+GGG - chr4_2:54919599-54919618 Msa0607910:intron 30.0%
AAAGAATCATCAAGCTGAAA+GGG - chr4_2:54919645-54919664 Msa0607910:CDS 30.0%
!!! CTTTTAGCTTGATGATTCTT+TGG + chr4_2:54919502-54919521 None:intergenic 30.0%
CAAAGAATCATCAAGCTAAA+AGG - chr4_2:54919500-54919519 Msa0607910:CDS 30.0%
AAGAATCATCAAGCTAAAAG+GGG - chr4_2:54919502-54919521 Msa0607910:CDS 30.0%
ATCAAAACCAAACTCAACTA+CGG + chr4_2:54919885-54919904 None:intergenic 30.0%
CAAACTGGAAATAATTACCA+TGG + chr4_2:54919963-54919982 None:intergenic 30.0%
TTATTTCCAGTTTGAACTTG+TGG - chr4_2:54919969-54919988 Msa0607910:CDS 30.0%
TATAAACCACAAGTTCAAAC+TGG + chr4_2:54919978-54919997 None:intergenic 30.0%
!! TCTGAAACTTGGAGAGTTTT+GGG + chr4_2:54917566-54917585 None:intergenic 35.0%
TGGATGGTTGACATTTAGTT+TGG - chr4_2:54917722-54917741 Msa0607910:CDS 35.0%
! TAGTTTGGACTTTTTGTAGG+TGG - chr4_2:54917737-54917756 Msa0607910:CDS 35.0%
! AGTTTGGACTTTTTGTAGGT+GGG - chr4_2:54917738-54917757 Msa0607910:CDS 35.0%
AATATTCCCTTACATCCTCT+GGG + chr4_2:54917846-54917865 None:intergenic 35.0%
GAATATTGGTGGAAGTTGTT+TGG - chr4_2:54917859-54917878 Msa0607910:CDS 35.0%
ATATTGGTGGAAGTTGTTTG+GGG - chr4_2:54917861-54917880 Msa0607910:CDS 35.0%
!! CTTTTGAGAGCATATCTGAA+AGG + chr4_2:54918028-54918047 None:intergenic 35.0%
ACCAATCGTAATTCGTGTAA+AGG - chr4_2:54918155-54918174 Msa0607910:CDS 35.0%
AATCGTAATTCGTGTAAAGG+CGG - chr4_2:54918158-54918177 Msa0607910:CDS 35.0%
!! TCTTTTTAGCCACCCATAAA+AGG - chr4_2:54918357-54918376 Msa0607910:CDS 35.0%
! ATTGCCAGACTTCCTTTTAT+GGG + chr4_2:54918372-54918391 None:intergenic 35.0%
! AATTGCCAGACTTCCTTTTA+TGG + chr4_2:54918373-54918392 None:intergenic 35.0%
ATAAAAGGAAGTCTGGCAAT+TGG - chr4_2:54918372-54918391 Msa0607910:CDS 35.0%
TAAAAGGAAGTCTGGCAATT+GGG - chr4_2:54918373-54918392 Msa0607910:CDS 35.0%
! AAGGAGGTACAAACACAAAA+TGG - chr4_2:54918530-54918549 Msa0607910:CDS 35.0%
GGTACAAACACAAAATGGTA+AGG - chr4_2:54918535-54918554 Msa0607910:CDS 35.0%
GAAACTTGAATTGTGGAAAG+AGG - chr4_2:54918595-54918614 Msa0607910:CDS 35.0%
ACAACATTATCAGCATTTGG+AGG - chr4_2:54918856-54918875 Msa0607910:CDS 35.0%
CTAGATGTTTCTTTCTTCGA+CGG + chr4_2:54919066-54919085 None:intergenic 35.0%
!! GAAAGAAACATCTAGCTCTA+AGG - chr4_2:54919071-54919090 Msa0607910:CDS 35.0%
! TCTTGTGAGCTTGATGTTTT+TGG + chr4_2:54919153-54919172 None:intergenic 35.0%
! AAAGCATCATCAAGCTGAAA+GGG - chr4_2:54919219-54919238 Msa0607910:intron 35.0%
!! CTTTTAGCATGATGTTGCTT+TGG + chr4_2:54919358-54919377 None:intergenic 35.0%
CAAAGCAACATCATGCTAAA+AGG - chr4_2:54919356-54919375 Msa0607910:CDS 35.0%
AAGCAACATCATGCTAAAAG+GGG - chr4_2:54919358-54919377 Msa0607910:CDS 35.0%
!!! TTTTTAGCTTGTCGTTGCTT+TGG + chr4_2:54919430-54919449 None:intergenic 35.0%
!! GACGAAGACAATTTGTTAGA+TGG - chr4_2:54919541-54919560 Msa0607910:intron 35.0%
!! CGAAGACAATTTGTTAGATG+GGG - chr4_2:54919543-54919562 Msa0607910:intron 35.0%
!!! TTTTTAGCTTGAGGTTGCTT+TGG + chr4_2:54919574-54919593 None:intergenic 35.0%
! CATCCTCACTATGATAATGA+TGG - chr4_2:54919598-54919617 Msa0607910:intron 35.0%
! TCCTCACTATGATAATGATG+GGG - chr4_2:54919600-54919619 Msa0607910:intron 35.0%
! CTTTCAGCTTGATGATTCTT+TGG + chr4_2:54919646-54919665 None:intergenic 35.0%
CAAAGAATCATCAAGCTGAA+AGG - chr4_2:54919644-54919663 Msa0607910:CDS 35.0%
AAGAATCATCAAGCTGAAAG+GGG - chr4_2:54919646-54919665 Msa0607910:CDS 35.0%
!!! TTTTTAGCTTGACGTTGCTT+TGG + chr4_2:54919721-54919740 None:intergenic 35.0%
! TCCTCACTATGATAATGATG+AGG - chr4_2:54919600-54919619 Msa0607910:intron 35.0%
TCCTCATCATTATCATAGTG+AGG + chr4_2:54919751-54919770 None:intergenic 35.0%
! TCCTCTGTATGAGGAGTTTT+GGG + chr4_2:54917524-54917543 None:intergenic 40.0%
! ATCCTCTGTATGAGGAGTTT+TGG + chr4_2:54917525-54917544 None:intergenic 40.0%
TCTTCTGAATCCTCTGTATG+AGG + chr4_2:54917533-54917552 None:intergenic 40.0%
TCATACAGAGGATTCAGAAG+AGG - chr4_2:54917532-54917551 Msa0607910:three_prime_UTR 40.0%
!! GTCTGAAACTTGGAGAGTTT+TGG + chr4_2:54917567-54917586 None:intergenic 40.0%
! CATTCTGCTTGTCTGAAACT+TGG + chr4_2:54917577-54917596 None:intergenic 40.0%
CTGATGGGAAGGTTCTTATA+CGG - chr4_2:54917597-54917616 Msa0607910:CDS 40.0%
ATAACTTACCCTAGACCACA+GGG + chr4_2:54917623-54917642 None:intergenic 40.0%
TATAACTTACCCTAGACCAC+AGG + chr4_2:54917624-54917643 None:intergenic 40.0%
ATATTCCCTTACATCCTCTG+GGG + chr4_2:54917845-54917864 None:intergenic 40.0%
CAATATTCCCTTACATCCTC+TGG + chr4_2:54917847-54917866 None:intergenic 40.0%
CAGAGGATGTAAGGGAATAT+TGG - chr4_2:54917845-54917864 Msa0607910:CDS 40.0%
AGGATGTAAGGGAATATTGG+TGG - chr4_2:54917848-54917867 Msa0607910:CDS 40.0%
TTGATATACCCATGATCACG+AGG + chr4_2:54917975-54917994 None:intergenic 40.0%
CAGATATGCTCTCAAAAGTG+AGG - chr4_2:54918030-54918049 Msa0607910:CDS 40.0%
CTCTCAAAAGTGAGGAAGAA+GGG - chr4_2:54918038-54918057 Msa0607910:CDS 40.0%
TCTCAAAAGTGAGGAAGAAG+GGG - chr4_2:54918039-54918058 Msa0607910:CDS 40.0%
ACCTCATTGGATATGTGAAG+AGG - chr4_2:54918067-54918086 Msa0607910:CDS 40.0%
ATTGGATATGTGAAGAGGCT+TGG - chr4_2:54918072-54918091 Msa0607910:CDS 40.0%
ATATGTGAAGAGGCTTGGAA+GGG - chr4_2:54918077-54918096 Msa0607910:CDS 40.0%
GCCTTTACACGAATTACGAT+TGG + chr4_2:54918159-54918178 None:intergenic 40.0%
TTAATGCAGGCTCAAGAACT+TGG - chr4_2:54918311-54918330 Msa0607910:CDS 40.0%
TAATGCAGGCTCAAGAACTT+GGG - chr4_2:54918312-54918331 Msa0607910:CDS 40.0%
ACAATATCACGATCGTCTGA+AGG - chr4_2:54918511-54918530 Msa0607910:CDS 40.0%
! CAGACTTTGCTTTAAACCTC+CGG - chr4_2:54918657-54918676 Msa0607910:CDS 40.0%
TGATCATGCTATGCATCTAG+AGG - chr4_2:54918733-54918752 Msa0607910:CDS 40.0%
CTAAGAACTCGTCTAGTGAA+TGG + chr4_2:54919039-54919058 None:intergenic 40.0%
!! CTTTCAGCTTGATGATGCTT+TGG + chr4_2:54919220-54919239 None:intergenic 40.0%
! CAAAGCATCATCAAGCTGAA+AGG - chr4_2:54919218-54919237 Msa0607910:intron 40.0%
AAGCATCATCAAGCTGAAAG+GGG - chr4_2:54919220-54919239 Msa0607910:intron 40.0%
TGATGAGGATTCACTAGATG+AGG - chr4_2:54919258-54919277 Msa0607910:CDS 40.0%
AAAGCAGCGTCAAGCTAAAA+GGG - chr4_2:54919288-54919307 Msa0607910:CDS 40.0%
AGCAACGACAAGCTAAAAAG+CGG - chr4_2:54919431-54919450 Msa0607910:CDS 40.0%
TTGTCTTCGTCATCATAGTG+AGG + chr4_2:54919532-54919551 None:intergenic 40.0%
TCCCCATCATTATCATAGTG+AGG + chr4_2:54919604-54919623 None:intergenic 40.0%
TCATCGTCATCATCATAGTG+AGG + chr4_2:54919676-54919695 None:intergenic 40.0%
!! GAATCGGTGTCATCATAAAG+AGG + chr4_2:54919823-54919842 None:intergenic 40.0%
TAAGACCTCGTCTAGTGAAT+CGG + chr4_2:54919839-54919858 None:intergenic 40.0%
GTCATTACCGTAGTTGAGTT+TGG - chr4_2:54919875-54919894 Msa0607910:CDS 40.0%
AGTACAGTACGTCAACACAA+AGG + chr4_2:54919939-54919958 None:intergenic 40.0%
TCCCAAAACTCCTCATACAG+AGG - chr4_2:54917520-54917539 Msa0607910:three_prime_UTR 45.0%
TACAGAGGATTCAGAAGAGG+AGG - chr4_2:54917535-54917554 Msa0607910:three_prime_UTR 45.0%
TCAGACAAGCAGAATGCTGA+TGG - chr4_2:54917581-54917600 Msa0607910:exon 45.0%
CAGACAAGCAGAATGCTGAT+GGG - chr4_2:54917582-54917601 Msa0607910:exon 45.0%
GCTCTCAAAAGTGAGGAAGA+AGG - chr4_2:54918037-54918056 Msa0607910:CDS 45.0%
GCCTCTTCACATATCCAATG+AGG + chr4_2:54918071-54918090 None:intergenic 45.0%
GATATGTGAAGAGGCTTGGA+AGG - chr4_2:54918076-54918095 Msa0607910:CDS 45.0%
GAAGGGTCTTAATGCCCATT+GGG - chr4_2:54918094-54918113 Msa0607910:CDS 45.0%
TGTTGATGTGGCACTTAGCA+TGG - chr4_2:54918211-54918230 Msa0607910:CDS 45.0%
GTGGCTAAAAAGAGCTCATC+GGG + chr4_2:54918350-54918369 None:intergenic 45.0%
GGTGGCTAAAAAGAGCTCAT+CGG + chr4_2:54918351-54918370 None:intergenic 45.0%
ATATCACGATCGTCTGAAGG+AGG - chr4_2:54918514-54918533 Msa0607910:CDS 45.0%
TATCTCTTGCATCCCGTTCT+GGG + chr4_2:54918564-54918583 None:intergenic 45.0%
AACGGGATGCAAGAGATAGA+TGG - chr4_2:54918566-54918585 Msa0607910:CDS 45.0%
ACGGGATGCAAGAGATAGAT+GGG - chr4_2:54918567-54918586 Msa0607910:CDS 45.0%
GAATTGTGGAAAGAGGTTGC+TGG - chr4_2:54918602-54918621 Msa0607910:CDS 45.0%
TGATCACACCCACCACTATA+AGG + chr4_2:54918719-54918738 None:intergenic 45.0%
! CTCTTTACGGACTGCATCAA+TGG + chr4_2:54918759-54918778 None:intergenic 45.0%
CATTGATGCAGTCCGTAAAG+AGG - chr4_2:54918757-54918776 Msa0607910:CDS 45.0%
!! TTGTGAAAGCACCTGCTGAT+TGG + chr4_2:54918925-54918944 None:intergenic 45.0%
!! TTGTGAAAGCACCTGCTGAT+TGG + chr4_2:54918925-54918944 None:intergenic 45.0%
GAATGGTCATCATCATAGCG+AGG + chr4_2:54919022-54919041 None:intergenic 45.0%
!!! GATGTTTTTGGCGACGGTTT+GGG + chr4_2:54919141-54919160 None:intergenic 45.0%
!!! TGATGTTTTTGGCGACGGTT+TGG + chr4_2:54919142-54919161 None:intergenic 45.0%
!!! GAGCTTGATGTTTTTGGCGA+CGG + chr4_2:54919147-54919166 None:intergenic 45.0%
! CTATGATGATGAGGATTCGC+TGG - chr4_2:54919183-54919202 Msa0607910:intron 45.0%
!!! CTTTTAGCTTGACGCTGCTT+TGG + chr4_2:54919289-54919308 None:intergenic 45.0%
CAAAGCAGCGTCAAGCTAAA+AGG - chr4_2:54919287-54919306 Msa0607910:CDS 45.0%
AAGCAGCGTCAAGCTAAAAG+GGG - chr4_2:54919289-54919308 Msa0607910:CDS 45.0%
TCGTCATCATCGTCATAGTG+AGG + chr4_2:54919388-54919407 None:intergenic 45.0%
! GATGATGACGATTTGCCAGA+CGG - chr4_2:54919397-54919416 Msa0607910:CDS 45.0%
! ATGATGACGATTTGCCAGAC+GGG - chr4_2:54919398-54919417 Msa0607910:CDS 45.0%
! TCCTCACCATGATAATGACG+AGG - chr4_2:54919456-54919475 Msa0607910:CDS 45.0%
TCCTCGTCATTATCATGGTG+AGG + chr4_2:54919460-54919479 None:intergenic 45.0%
GCGAATCCTCGTCATTATCA+TGG + chr4_2:54919465-54919484 None:intergenic 45.0%
!!! GGATGTCGCTTTTTAGCTTG+AGG + chr4_2:54919583-54919602 None:intergenic 45.0%
TGATGGGGATTCGTTACATG+AGG - chr4_2:54919615-54919634 Msa0607910:CDS 45.0%
ACGATGACGATTTGCCAGAT+GGG - chr4_2:54919689-54919708 Msa0607910:CDS 45.0%
TGCTTTGGTAAAACCCCATC+TGG + chr4_2:54919559-54919578 None:intergenic 45.0%
TGATGAGGATTCGCTACATG+AGG - chr4_2:54919762-54919781 Msa0607910:intron 45.0%
CTCAACTACGGTAATGACGA+CGG + chr4_2:54919873-54919892 None:intergenic 45.0%
GTTGACGTACTGTACTACCA+TGG - chr4_2:54919943-54919962 Msa0607910:CDS 45.0%
AGAGGAGGAGGAATCAGAAG+AGG - chr4_2:54917490-54917509 Msa0607910:three_prime_UTR 50.0%
AGAGGATTCAGAAGAGGAGG+AGG - chr4_2:54917538-54917557 Msa0607910:three_prime_UTR 50.0%
CAAGCAGAATGCTGATGGGA+AGG - chr4_2:54917586-54917605 Msa0607910:exon 50.0%
AAGGTTCTTATACGGCCCTG+TGG - chr4_2:54917605-54917624 Msa0607910:CDS 50.0%
TTATACGGCCCTGTGGTCTA+GGG - chr4_2:54917612-54917631 Msa0607910:CDS 50.0%
TCTGTGTGTGTGTGTGTGGA+TGG - chr4_2:54917706-54917725 Msa0607910:CDS 50.0%
GCCATCCAGTCACACTTTCA+GGG - chr4_2:54917796-54917815 Msa0607910:CDS 50.0%
! ACCCTGAAAGTGTGACTGGA+TGG + chr4_2:54917800-54917819 None:intergenic 50.0%
! AAGGACCCTGAAAGTGTGAC+TGG + chr4_2:54917804-54917823 None:intergenic 50.0%
TTCAGGGTCCTTTCTATCGC+TGG - chr4_2:54917812-54917831 Msa0607910:CDS 50.0%
GTCTCACTCCAGCGATAGAA+AGG + chr4_2:54917823-54917842 None:intergenic 50.0%
TGAGACCCCAGAGGATGTAA+GGG - chr4_2:54917837-54917856 Msa0607910:CDS 50.0%
CTTGGGATCCTCGTGATCAT+GGG - chr4_2:54917964-54917983 Msa0607910:CDS 50.0%
GGAAGGGTCTTAATGCCCAT+TGG - chr4_2:54918093-54918112 Msa0607910:CDS 50.0%
GGTCTTAATGCCCATTGGGA+GGG - chr4_2:54918098-54918117 Msa0607910:CDS 50.0%
AAAGGCTTCACCCTCCCAAT+GGG + chr4_2:54918111-54918130 None:intergenic 50.0%
TAAAGGCTTCACCCTCCCAA+TGG + chr4_2:54918112-54918131 None:intergenic 50.0%
CCACATCAACATGAGCCTTG+CGG + chr4_2:54918202-54918221 None:intergenic 50.0%
GCCACCCATAAAAGGAAGTC+TGG - chr4_2:54918365-54918384 Msa0607910:CDS 50.0%
! GCCAGACTTCCTTTTATGGG+TGG + chr4_2:54918369-54918388 None:intergenic 50.0%
AATGGTAAGGCCTCCCAGAA+CGG - chr4_2:54918548-54918567 Msa0607910:CDS 50.0%
CTATCTCTTGCATCCCGTTC+TGG + chr4_2:54918565-54918584 None:intergenic 50.0%
CGGGATGCAAGAGATAGATG+GGG - chr4_2:54918568-54918587 Msa0607910:CDS 50.0%
GGGCGACGAAACTTGAATTG+TGG - chr4_2:54918588-54918607 Msa0607910:CDS 50.0%
TTGTGGAAAGAGGTTGCTGG+TGG - chr4_2:54918605-54918624 Msa0607910:CDS 50.0%
!! AAGAGTCGAGGTCGGTGTTA+TGG - chr4_2:54918629-54918648 Msa0607910:CDS 50.0%
! TTTGCTTTAAACCTCCGGCG+TGG - chr4_2:54918662-54918681 Msa0607910:CDS 50.0%
!! TGGTGTAACTTCGCTGACTC+AGG - chr4_2:54918682-54918701 Msa0607910:CDS 50.0%
GAGTCTCGGGAACCTTATAG+TGG - chr4_2:54918704-54918723 Msa0607910:CDS 50.0%
TCTCGGGAACCTTATAGTGG+TGG - chr4_2:54918707-54918726 Msa0607910:CDS 50.0%
CTCGGGAACCTTATAGTGGT+GGG - chr4_2:54918708-54918727 Msa0607910:CDS 50.0%
AAGTGTGAGTCAAGCTCGCA+GGG - chr4_2:54918943-54918962 Msa0607910:CDS 50.0%
ACATCCTCGCTACGATGATG+AGG - chr4_2:54919243-54919262 Msa0607910:intron 50.0%
GAATCCTCATCATCGTAGCG+AGG + chr4_2:54919250-54919269 None:intergenic 50.0%
! TGATGACGATTTGCCAGACG+GGG - chr4_2:54919399-54919418 Msa0607910:CDS 50.0%
TGACGAGGATTCGCTACATG+AGG - chr4_2:54919471-54919490 Msa0607910:CDS 50.0%
GACGATGACGATTTGCCAGA+TGG - chr4_2:54919688-54919707 Msa0607910:CDS 50.0%
CGATGACGATTTGCCAGATG+GGG - chr4_2:54919690-54919709 Msa0607910:CDS 50.0%
!! TGACACCGATTCACTAGACG+AGG - chr4_2:54919831-54919850 Msa0607910:intron 50.0%
GGAGGAATCAGAAGAGGAGG+AGG - chr4_2:54917478-54917497 Msa0607910:three_prime_UTR 55.0%
GGAGGAGGAATCAGAAGAGG+AGG - chr4_2:54917493-54917512 Msa0607910:three_prime_UTR 55.0%
GGAGGAATCAGAAGAGGAGG+AGG - chr4_2:54917478-54917497 Msa0607910:three_prime_UTR 55.0%
CTTATACGGCCCTGTGGTCT+AGG - chr4_2:54917611-54917630 Msa0607910:CDS 55.0%
CGTGTCTGTGTGTGTGTGTG+TGG - chr4_2:54917702-54917721 Msa0607910:CDS 55.0%
GCGTGTTTAATCGCAGCAGC+AGG + chr4_2:54917778-54917797 None:intergenic 55.0%
CGCCATCCAGTCACACTTTC+AGG - chr4_2:54917795-54917814 Msa0607910:CDS 55.0%
GTGAGACCCCAGAGGATGTA+AGG - chr4_2:54917836-54917855 Msa0607910:CDS 55.0%
GCTTGGGATCCTCGTGATCA+TGG - chr4_2:54917963-54917982 Msa0607910:CDS 55.0%
AGAAGGGGACGAGACCTCAT+TGG - chr4_2:54918054-54918073 Msa0607910:CDS 55.0%
GGGTCTTAATGCCCATTGGG+AGG - chr4_2:54918097-54918116 Msa0607910:CDS 55.0%
CCGCAAGGCTCATGTTGATG+TGG - chr4_2:54918199-54918218 Msa0607910:CDS 55.0%
TGCAGGCTCAAGAACTTGGG+CGG - chr4_2:54918315-54918334 Msa0607910:CDS 55.0%
TCAAGAACTTGGGCGGTCTG+TGG - chr4_2:54918322-54918341 Msa0607910:CDS 55.0%
ATGGTAAGGCCTCCCAGAAC+GGG - chr4_2:54918549-54918568 Msa0607910:CDS 55.0%
GTTGCTGGTGGAAAGAGTCG+AGG - chr4_2:54918617-54918636 Msa0607910:CDS 55.0%
CTGGTGGAAAGAGTCGAGGT+CGG - chr4_2:54918621-54918640 Msa0607910:CDS 55.0%
TCAGCGAAGTTACACCACGC+CGG + chr4_2:54918679-54918698 None:intergenic 55.0%
!! CTTCGCTGACTCAGGAGTCT+CGG - chr4_2:54918690-54918709 Msa0607910:CDS 55.0%
!! TTCGCTGACTCAGGAGTCTC+GGG - chr4_2:54918691-54918710 Msa0607910:CDS 55.0%
CAAGTGTGAGTCAAGCTCGC+AGG - chr4_2:54918942-54918961 Msa0607910:CDS 55.0%
AGTGTGAGTCAAGCTCGCAG+GGG - chr4_2:54918944-54918963 Msa0607910:CDS 55.0%
AAGTGCGAGTCAAGCTCGCA+GGG - chr4_2:54918991-54919010 Msa0607910:intron 55.0%
CGACGACGACTCTCTAGATG+AGG - chr4_2:54919327-54919346 Msa0607910:CDS 55.0%
TGCTTTGGTAAGACCCCGTC+TGG + chr4_2:54919415-54919434 None:intergenic 55.0%
TACGGTAATGACGACGGCGA+CGG + chr4_2:54919867-54919886 None:intergenic 55.0%
! TTGTAGGTGGGCTCCTAGCG+CGG - chr4_2:54917750-54917769 Msa0607910:CDS 60.0%
AACATGAGCCTTGCGGCCTG+TGG + chr4_2:54918195-54918214 None:intergenic 60.0%
! CTCTTGCATCCCGTTCTGGG+AGG + chr4_2:54918561-54918580 None:intergenic 60.0%
GTGCTGCGGCAGCCTCTTTA+CGG + chr4_2:54918772-54918791 None:intergenic 60.0%
AGCAGCCTCCTGATGTGCTG+CGG + chr4_2:54918786-54918805 None:intergenic 60.0%
GTTTCGACTCAGCTGCCTCC+TGG + chr4_2:54918838-54918857 None:intergenic 60.0%
!! GCTCTAGAGCGCCAATCAGC+AGG - chr4_2:54918911-54918930 Msa0607910:CDS 60.0%
CAAGTGCGAGTCAAGCTCGC+AGG - chr4_2:54918990-54919009 Msa0607910:intron 60.0%
AGTGCGAGTCAAGCTCGCAG+GGG - chr4_2:54918992-54919011 Msa0607910:intron 60.0%
ACGGTAATGACGACGGCGAC+GGG + chr4_2:54919866-54919885 None:intergenic 60.0%
TCGCTGGAGTGAGACCCCAG+AGG - chr4_2:54917828-54917847 Msa0607910:CDS 65.0%
AGTCCACACCACAGGCCGCA+AGG - chr4_2:54918184-54918203 Msa0607910:CDS 65.0%
GCGAAGTTACACCACGCCGG+AGG + chr4_2:54918676-54918695 None:intergenic 65.0%
AGAGGCTGCCGCAGCACATC+AGG - chr4_2:54918775-54918794 Msa0607910:CDS 65.0%
TAATGACGACGGCGACGGGC+TGG + chr4_2:54919862-54919881 None:intergenic 65.0%
GGCGGAGCAGTCCACACCAC+AGG - chr4_2:54918176-54918195 Msa0607910:CDS 70.0%
GAGCCTTGCGGCCTGTGGTG+TGG + chr4_2:54918190-54918209 None:intergenic 70.0%
GGCTGCCGCAGCACATCAGG+AGG - chr4_2:54918778-54918797 Msa0607910:CDS 70.0%
GGAGGCTGCTGCAGCACGTC+AGG - chr4_2:54918796-54918815 Msa0607910:CDS 70.0%
GGCTGCTGCAGCACGTCAGG+AGG - chr4_2:54918799-54918818 Msa0607910:CDS 70.0%
AGCTGCCTCCTGGCGTGCTG+TGG + chr4_2:54918828-54918847 None:intergenic 70.0%
CGCAGGGGACGCCAATCAGC+AGG - chr4_2:54918959-54918978 Msa0607910:CDS 70.0%
GGAGGCAGCCACAGCACGCC+AGG - chr4_2:54918817-54918836 Msa0607910:CDS 75.0%
GGCAGCCACAGCACGCCAGG+AGG - chr4_2:54918820-54918839 Msa0607910:CDS 75.0%
!! GCAGCAGCAGGCGCCGCGCT+AGG + chr4_2:54917766-54917785 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54917476 54920011 54917476 ID=Msa0607910;Name=Msa0607910
chr4_2 mRNA 54917476 54920011 54917476 ID=Msa0607910-mRNA-1;Parent=Msa0607910;Name=Msa0607910-mRNA-1;_AED=0.13;_eAED=0.14;_QI=0|1|0.8|1|1|1|5|120|682
chr4_2 exon 54917476 54918978 54917476 ID=Msa0607910-mRNA-1:exon:13896;Parent=Msa0607910-mRNA-1
chr4_2 exon 54919066 54919167 54919066 ID=Msa0607910-mRNA-1:exon:13895;Parent=Msa0607910-mRNA-1
chr4_2 exon 54919255 54919533 54919255 ID=Msa0607910-mRNA-1:exon:13894;Parent=Msa0607910-mRNA-1
chr4_2 exon 54919605 54919731 54919605 ID=Msa0607910-mRNA-1:exon:13893;Parent=Msa0607910-mRNA-1
chr4_2 exon 54919854 54920011 54919854 ID=Msa0607910-mRNA-1:exon:13892;Parent=Msa0607910-mRNA-1
chr4_2 CDS 54919854 54920011 54919854 ID=Msa0607910-mRNA-1:cds;Parent=Msa0607910-mRNA-1
chr4_2 CDS 54919605 54919731 54919605 ID=Msa0607910-mRNA-1:cds;Parent=Msa0607910-mRNA-1
chr4_2 CDS 54919255 54919533 54919255 ID=Msa0607910-mRNA-1:cds;Parent=Msa0607910-mRNA-1
chr4_2 CDS 54919066 54919167 54919066 ID=Msa0607910-mRNA-1:cds;Parent=Msa0607910-mRNA-1
chr4_2 CDS 54917596 54918978 54917596 ID=Msa0607910-mRNA-1:cds;Parent=Msa0607910-mRNA-1
chr4_2 three_prime_UTR 54917476 54917595 54917476 ID=Msa0607910-mRNA-1:three_prime_utr;Parent=Msa0607910-mRNA-1
Gene Sequence

>Msa0607910

ATGGAGGAATCAGAAGAGGAGGAGGAATCAGAAGAGGAGGAGGATCCCAAAACTCCTCATACAGAGGATTCAGAAGAGGAGGAGGATCCCAAAACTCTCCAAGTTTCAGACAAGCAGAATGCTGATGGGAAGGTTCTTATACGGCCCTGTGGTCTAGGGTGGGCTCCTAGCGCGGCGCCTGCTGCTGCGATTAAACACGCCATCCAGTCACACTTTCAGGGTCCTTTCTATCGCTGGAGTGAGACCCCAGAGGATGTAAGGGAATATTGGTGGAAGTTGTTTGGGGACAAGATTGCTTGGGATCCTCGTGATCATGGGTATATCAAAAAGACGTTTCAAACAAGAGGCGCAAAACGCCTTTCAGATATGCTCTCAAAAGTGAGGAAGAAGGGGACGAGACCTCATTGGATATGTGAAGAGGCTTGGAAGGGTCTTAATGCCCATTGGGAGGGTGAAGCCTTTATAAAGATCTCTAGCCAAAATAAGACCAATCGTAATTCGTGTAAAGGCGGAGCAGTCCACACCACAGGCCGCAAGGCTCATGTTGATGTGGCACTTAGCATGGCTCAAGAACTTGGGCGGTCTGTGGATCCCGATGAGCTCTTTTTAGCCACCCATAAAAGGAAGTCTGGCAATTGGGTTGATGACCGCTCTCAAACAACATATAAACAATATCACGATCGTCTGAAGGAGGTACAAACACAAAATGGTAAGGCCTCCCAGAACGGGATGCAAGAGATAGATGGGGCGACGAAACTTGAATTGTGGAAAGAGGTTGCTGGTGGAAAGAGTCGAGGTCGGTGTTATGGCACTGCAGACTTTGCTTTAAACCTCCGGCGTGGTGTAACTTCGCTGACTCAGGAGTCTCGGGAACCTTATAGTGGTGGGTGTGATCATGCTATGCATCTAGAGGCCATTGATGCAGTCCGTAAAGAGGCTGCCGCAGCACATCAGGAGGCTGCTGCAGCACGTCAGGAGGCAGCCACAGCACGCCAGGAGGCAGCTGAGTCGAAACAACATTATCAGCATTTGGAGGAGCAGTTGCGCAAAGTAATGAAGCACATGAAAGCTCTAGAGCGCCAATCAGCAGGTGCTTTCACAAGTGTGAGTCAAGCTCGCAGGGGACGCCAATCAGCAGGTGCTTTCACAAGTGCGAGTCAAGCTCGCAGGGGACATCCTCGCTATGATGATGACCATTCACTAGACGAGTTCTTAGCAGACCGTCGAAGAAAGAAACATCTAGCTCTAAGGCGACATTCTCATTATGATGACGACTATTCAGTAGATGAGATCTTCCCAAACCGTCGCCAAAAACATCAAGCTCACAAGAGACATTATCACTATGATGATGAGGATTCGCTGGATTCACTCTTACCAAAGCATCATCAAGCTGAAAGGGGACATCCTCGCTACGATGATGAGGATTCACTAGATGAGGTTTTACCAAAGCAGCGTCAAGCTAAAAGGGGTCGTTCTCACTATGACGACGACGACTCTCTAGATGAGGTCTTACCAAAGCAACATCATGCTAAAAGGGGACATCCTCACTATGACGATGATGACGATTTGCCAGACGGGGTCTTACCAAAGCAACGACAAGCTAAAAAGCGGCATCCTCACCATGATAATGACGAGGATTCGCTACATGAGGACTTACCAAAGAATCATCAAGCTAAAAGGGGACGTCCTCACTATGATGACGAAGACAATTTGTTAGATGGGGTTTTACCAAAGCAACCTCAAGCTAAAAAGCGACATCCTCACTATGATAATGATGGGGATTCGTTACATGAGGACTTACCAAAGAATCATCAAGCTGAAAGGGGACAGCCTCACTATGATGATGACGATGACGATTTGCCAGATGGGGTTTTACCAAAGCAACGTCAAGCTAAAAAGCTACATCCTCACTATGATAATGATGAGGATTCGCTACATGAGGACTTACCAAAGAATCATCAAGCTAAAAGGGGACGTCCTCTTTATGATGACACCGATTCACTAGACGAGGTCTTACCAGCCCGTCGCCGTCGTCATTACCGTAGTTGA

Protein sequence

>Msa0607910

MEESEEEEESEEEEDPKTPHTEDSEEEEDPKTLQVSDKQNADGKVLIRPCGLGWAPSAAPAAAIKHAIQSHFQGPFYRWSETPEDVREYWWKLFGDKIAWDPRDHGYIKKTFQTRGAKRLSDMLSKVRKKGTRPHWICEEAWKGLNAHWEGEAFIKISSQNKTNRNSCKGGAVHTTGRKAHVDVALSMAQELGRSVDPDELFLATHKRKSGNWVDDRSQTTYKQYHDRLKEVQTQNGKASQNGMQEIDGATKLELWKEVAGGKSRGRCYGTADFALNLRRGVTSLTQESREPYSGGCDHAMHLEAIDAVRKEAAAAHQEAAAARQEAATARQEAAESKQHYQHLEEQLRKVMKHMKALERQSAGAFTSVSQARRGRQSAGAFTSASQARRGHPRYDDDHSLDEFLADRRRKKHLALRRHSHYDDDYSVDEIFPNRRQKHQAHKRHYHYDDEDSLDSLLPKHHQAERGHPRYDDEDSLDEVLPKQRQAKRGRSHYDDDDSLDEVLPKQHHAKRGHPHYDDDDDLPDGVLPKQRQAKKRHPHHDNDEDSLHEDLPKNHQAKRGRPHYDDEDNLLDGVLPKQPQAKKRHPHYDNDGDSLHEDLPKNHQAERGQPHYDDDDDDLPDGVLPKQRQAKKLHPHYDNDEDSLHEDLPKNHQAKRGRPLYDDTDSLDEVLPARRRRHYRS*