Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088530 | RHN79978.1 | 62.587 | 433 | 103 | 9 | 105 | 507 | 2 | 405 | 4.95e-166 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088530 | sp|Q9FLH8|SCRK7_ARATH | 63.694 | 314 | 94 | 3 | 207 | 502 | 23 | 334 | 1.12e-128 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088530 | A0A396JUR1 | 62.587 | 433 | 103 | 9 | 105 | 507 | 2 | 405 | 2.36e-166 | 486 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0703780 | Msa1088530 | 0.801851 | 7.407584e-49 | -8.615850e-47 |
| Msa0131770 | Msa1088530 | 0.804582 | 2.015451e-49 | -8.615850e-47 |
| Msa0167680 | Msa1088530 | 0.864913 | 8.635089e-65 | -8.615850e-47 |
| Msa0999190 | Msa1088530 | 0.824078 | 9.806039e-54 | -8.615850e-47 |
| Msa1088530 | Msa1137570 | 0.802676 | 5.009551e-49 | -8.615850e-47 |
| Msa1088530 | Msa1249460 | 0.801197 | 1.008656e-48 | -8.615850e-47 |
| Msa1088530 | Msa1276890 | 0.800565 | 1.357550e-48 | -8.615850e-47 |
| Msa1088530 | Msa1366220 | 0.991536 | 3.594855e-188 | -8.615850e-47 |
| Msa0251640 | Msa1088530 | 0.810023 | 1.416700e-50 | -8.615850e-47 |
| Msa0545700 | Msa1088530 | 0.802626 | 5.131286e-49 | -8.615850e-47 |
| Msa0899430 | Msa1088530 | 0.805786 | 1.128142e-49 | -8.615850e-47 |
| Msa0927380 | Msa1088530 | 0.824029 | 1.006941e-53 | -8.615850e-47 |
| Msa0964900 | Msa1088530 | 0.802399 | 5.714630e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088530 | MtrunA17_Chr1g0183241 | 62.587 | 433 | 103 | 9 | 105 | 507 | 2 | 405 | 4.55e-170 | 486 |
| Msa1088530 | MtrunA17_Chr1g0204101 | 73.030 | 330 | 68 | 4 | 196 | 507 | 13 | 339 | 2.57e-158 | 453 |
| Msa1088530 | MtrunA17_Chr1g0177771 | 55.315 | 508 | 151 | 15 | 42 | 504 | 76 | 552 | 1.19e-151 | 444 |
| Msa1088530 | MtrunA17_Chr6g0474331 | 68.421 | 323 | 82 | 3 | 201 | 505 | 22 | 342 | 3.44e-146 | 423 |
| Msa1088530 | MtrunA17_Chr1g0177321 | 53.131 | 495 | 139 | 12 | 70 | 504 | 8 | 469 | 6.38e-141 | 414 |
| Msa1088530 | MtrunA17_Chr1g0171921 | 60.051 | 393 | 95 | 9 | 166 | 504 | 111 | 495 | 6.16e-132 | 393 |
| Msa1088530 | MtrunA17_Chr5g0434971 | 58.284 | 338 | 117 | 7 | 187 | 504 | 46 | 379 | 9.07e-114 | 341 |
| Msa1088530 | MtrunA17_Chr4g0033631 | 52.351 | 319 | 130 | 4 | 205 | 505 | 13 | 327 | 1.02e-100 | 306 |
| Msa1088530 | MtrunA17_Chr1g0188291 | 50.473 | 317 | 135 | 5 | 207 | 505 | 8 | 320 | 6.92e-100 | 303 |
| Msa1088530 | MtrunA17_Chr2g0329451 | 50.470 | 319 | 136 | 4 | 205 | 505 | 12 | 326 | 1.79e-99 | 303 |
| Msa1088530 | MtrunA17_Chr1g0183661 | 60.791 | 278 | 77 | 5 | 232 | 491 | 13 | 276 | 1.64e-98 | 299 |
| Msa1088530 | MtrunA17_Chr1g0176221 | 65.625 | 192 | 34 | 1 | 314 | 505 | 48 | 207 | 2.72e-72 | 228 |
| Msa1088530 | MtrunA17_Chr7g0246421 | 56.021 | 191 | 82 | 1 | 314 | 504 | 3 | 191 | 5.76e-67 | 214 |
| Msa1088530 | MtrunA17_Chr4g0020911 | 67.429 | 175 | 36 | 4 | 292 | 448 | 18 | 189 | 5.39e-61 | 199 |
| Msa1088530 | MtrunA17_Chr4g0008441 | 27.528 | 356 | 197 | 7 | 207 | 501 | 93 | 448 | 2.97e-34 | 134 |
| Msa1088530 | MtrunA17_Chr5g0419371 | 27.859 | 341 | 199 | 9 | 207 | 500 | 210 | 550 | 3.74e-34 | 135 |
| Msa1088530 | MtrunA17_Chr4g0020921 | 43.077 | 195 | 65 | 7 | 105 | 261 | 2 | 188 | 2.73e-29 | 116 |
| Msa1088530 | MtrunA17_Chr7g0246411 | 59.574 | 94 | 38 | 0 | 207 | 300 | 41 | 134 | 7.80e-27 | 106 |
| Msa1088530 | MtrunA17_Chr8g0386161 | 38.776 | 147 | 84 | 4 | 38 | 184 | 109 | 249 | 8.88e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088530 | AT5G51830.2 | 63.694 | 314 | 94 | 3 | 207 | 502 | 23 | 334 | 1.14e-129 | 381 |
| Msa1088530 | AT5G51830.1 | 63.694 | 314 | 94 | 3 | 207 | 502 | 23 | 334 | 1.14e-129 | 381 |
| Msa1088530 | AT1G66430.1 | 54.986 | 351 | 134 | 7 | 172 | 502 | 29 | 375 | 9.93e-115 | 344 |
| Msa1088530 | AT4G10260.1 | 54.194 | 310 | 120 | 5 | 207 | 498 | 6 | 311 | 2.91e-101 | 307 |
| Msa1088530 | AT1G06030.1 | 49.695 | 328 | 143 | 4 | 199 | 508 | 3 | 326 | 3.10e-99 | 302 |
| Msa1088530 | AT2G31390.1 | 49.691 | 324 | 141 | 5 | 200 | 505 | 2 | 321 | 3.41e-98 | 300 |
| Msa1088530 | AT1G06020.1 | 48.308 | 325 | 146 | 4 | 199 | 505 | 2 | 322 | 2.76e-95 | 293 |
| Msa1088530 | AT3G59480.1 | 48.758 | 322 | 143 | 5 | 199 | 502 | 2 | 319 | 4.92e-95 | 291 |
| Msa1088530 | AT1G50390.1 | 45.930 | 172 | 60 | 1 | 334 | 505 | 1 | 139 | 4.16e-41 | 145 |
| Msa1088530 | AT3G54090.1 | 29.213 | 356 | 192 | 8 | 207 | 502 | 103 | 458 | 5.43e-37 | 142 |
| Msa1088530 | AT1G69200.1 | 28.267 | 329 | 184 | 8 | 207 | 485 | 206 | 532 | 1.64e-31 | 129 |
| Msa1088530 | AT5G63540.2 | 28.782 | 271 | 169 | 8 | 44 | 314 | 143 | 389 | 1.21e-15 | 80.5 |
| Msa1088530 | AT5G63540.1 | 35.461 | 141 | 85 | 4 | 44 | 184 | 143 | 277 | 5.28e-15 | 78.2 |
Find 136 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAACCCTAGTGAATTAA+AGG | 0.212937 | 7_3:-1777688 | Msa1088530:CDS |
| GGTTCCGAGGGAACTCTTTC+AGG | 0.225694 | 7_3:+1777793 | None:intergenic |
| GCATGGAACTCATAAATTTA+TGG | 0.255111 | 7_3:-1777109 | Msa1088530:CDS |
| GTGTGTGCCTCTTGGATTAA+AGG | 0.266846 | 7_3:-1777327 | Msa1088530:intron |
| GAAGCTTGAGATTAGGATTA+GGG | 0.284752 | 7_3:+1775521 | None:intergenic |
| CTCTGACTTAAGGGATCTAT+TGG | 0.286430 | 7_3:-1777236 | Msa1088530:intron |
| CAGGCTAAAATATTCCATTA+TGG | 0.292003 | 7_3:-1775925 | Msa1088530:CDS |
| ATGGAATAGAGAAGCTAATA+AGG | 0.301023 | 7_3:-1777090 | Msa1088530:CDS |
| GAAAATAATGTTGATATATC+TGG | 0.307506 | 7_3:-1776166 | Msa1088530:CDS |
| CGATGGTCCCTTCATATTGC+AGG | 0.320003 | 7_3:-1777652 | Msa1088530:intron |
| ACTCTTTCAGGTTGGTTAAC+GGG | 0.342290 | 7_3:+1777805 | None:intergenic |
| CTCAAGCTTCTAATTGTTAC+CGG | 0.347684 | 7_3:-1775508 | Msa1088530:CDS |
| TAGGTTGGATCAGATGAATA+TGG | 0.354743 | 7_3:-1776214 | Msa1088530:CDS |
| AGAAGCTTGAGATTAGGATT+AGG | 0.357593 | 7_3:+1775520 | None:intergenic |
| AGTGGACTGGTTGTTTGTTT+TGG | 0.362156 | 7_3:-1776908 | Msa1088530:CDS |
| TTATCAATTTCTGTACTCAT+TGG | 0.363528 | 7_3:-1777478 | Msa1088530:CDS |
| CGAAATTGAGATTGGCACTA+TGG | 0.364731 | 7_3:-1775810 | Msa1088530:CDS |
| CCTATATTGCATAAAATTGC+AGG | 0.366702 | 7_3:+1774879 | None:intergenic |
| CATAGTGCCAATCTCAATTT+CGG | 0.370602 | 7_3:+1775811 | None:intergenic |
| TTCAAAACAACGAGATCAAA+AGG | 0.383283 | 7_3:+1774716 | None:intergenic |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.396668 | 7_3:-1776788 | Msa1088530:CDS |
| TATCAATTTCTGTACTCATT+GGG | 0.402045 | 7_3:-1777477 | Msa1088530:CDS |
| ACAATTAGAAGCTTGAGATT+AGG | 0.402862 | 7_3:+1775514 | None:intergenic |
| AACTCTTTCAGGTTGGTTAA+CGG | 0.403966 | 7_3:+1777804 | None:intergenic |
| AGTCTTGTACTGCAACATTC+AGG | 0.404914 | 7_3:-1774771 | Msa1088530:three_prime_UTR |
| GATCGGAAAACAGAAACTTC+TGG | 0.416380 | 7_3:+1777736 | None:intergenic |
| TCAAACCGATGAAACCATAA+TGG | 0.422923 | 7_3:+1775911 | None:intergenic |
| CCCTTTAATTCACTAGGGTT+AGG | 0.423783 | 7_3:+1777687 | None:intergenic |
| GGCAGTTGGCATCTCTAAGT+TGG | 0.428328 | 7_3:-1776789 | Msa1088530:CDS |
| CAACGTTGACTGACTGTGAC+TGG | 0.429125 | 7_3:+1777131 | None:intergenic |
| TGAATTACCTCGAAAATACT+TGG | 0.436297 | 7_3:+1775086 | None:intergenic |
| AGGTTGGATCAGATGAATAT+GGG | 0.438767 | 7_3:-1776213 | Msa1088530:CDS |
| GTTTGTGCGTGTGTGCCTCT+TGG | 0.441601 | 7_3:-1777335 | Msa1088530:CDS |
| ACAGATCAATATGTTGAGTT+GGG | 0.444557 | 7_3:-1774743 | Msa1088530:three_prime_UTR |
| GTTAAACCTGTCGACACAAC+TGG | 0.447474 | 7_3:-1775158 | Msa1088530:CDS |
| CCTTGGCCACTGTTCAATCA+TGG | 0.454789 | 7_3:+1774607 | None:intergenic |
| AACAGATCAATATGTTGAGT+TGG | 0.455366 | 7_3:-1774744 | Msa1088530:three_prime_UTR |
| CTGGTGATGCATTTGTTAGT+GGG | 0.458027 | 7_3:-1775133 | Msa1088530:CDS |
| GCATCTAGCCGATGTCATAA+AGG | 0.459308 | 7_3:-1775746 | Msa1088530:intron |
| TTATATTTCGCCAATGTATG+TGG | 0.459869 | 7_3:-1774959 | Msa1088530:CDS |
| AGGGATCTATTGGTACTTGT+AGG | 0.459955 | 7_3:-1777226 | Msa1088530:CDS |
| GCTGGTGATGCATTTGTTAG+TGG | 0.461233 | 7_3:-1775134 | Msa1088530:CDS |
| CTCTTTCAGGTTGGTTAACG+GGG | 0.464353 | 7_3:+1777806 | None:intergenic |
| TCTGGTTACAAGAAAGCTAT+TGG | 0.470303 | 7_3:-1776830 | Msa1088530:CDS |
| ACTTGTAGGTCGGCGTTCAA+TGG | 0.474161 | 7_3:-1777212 | Msa1088530:CDS |
| CTTCGAGCAGCCTCGGCTGA+TGG | 0.484267 | 7_3:+1775787 | None:intergenic |
| GAATCTCTTCCCCTTTCCCA+TGG | 0.488948 | 7_3:+1777852 | None:intergenic |
| ATATTCCATTATGGTTTCAT+CGG | 0.489571 | 7_3:-1775916 | Msa1088530:CDS |
| CACAGTCAGTCAACGTTGCA+TGG | 0.493522 | 7_3:-1777126 | Msa1088530:CDS |
| AAGGGGTGACAGCGGTTGAC+GGG | 0.495541 | 7_3:+1777772 | None:intergenic |
| GAAGTGGTATAATGAGCATA+TGG | 0.496433 | 7_3:-1775768 | Msa1088530:CDS |
| GAAACCAACCTGCAATATGA+AGG | 0.498129 | 7_3:+1777644 | None:intergenic |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.501143 | 7_3:-1776787 | Msa1088530:CDS |
| CTTGAATGGCTTCAAGAGGC+TGG | 0.502201 | 7_3:+1777357 | None:intergenic |
| GTATGATCCGAAATTGAGAT+TGG | 0.502636 | 7_3:-1775818 | Msa1088530:CDS |
| AGATGCAAAACCATGGGAAA+GGG | 0.504051 | 7_3:-1777862 | Msa1088530:CDS |
| CCTAACCCTAGTGAATTAAA+GGG | 0.505595 | 7_3:-1777687 | Msa1088530:CDS |
| AATACAACATCATCATCATA+AGG | 0.505738 | 7_3:+1775559 | None:intergenic |
| CACACACGCACAAACTTGAA+TGG | 0.506381 | 7_3:+1777343 | None:intergenic |
| TACCTCCTCCAGGTATTGAT+AGG | 0.507224 | 7_3:-1777439 | Msa1088530:CDS |
| AAGCTTCTAATTGTTACCGG+TGG | 0.508177 | 7_3:-1775505 | Msa1088530:CDS |
| TTCTAATTTCAACAACGCAT+TGG | 0.508694 | 7_3:-1776131 | Msa1088530:CDS |
| AAAATTTACCTTTATGACAT+CGG | 0.519416 | 7_3:+1775738 | None:intergenic |
| AATTGTTACCGGTGGGTCGG+AGG | 0.520536 | 7_3:-1775497 | Msa1088530:CDS |
| GAAGGGGTGACAGCGGTTGA+CGG | 0.523408 | 7_3:+1777771 | None:intergenic |
| AATATTAGAGTATTGGGAGG+AGG | 0.525399 | 7_3:-1777167 | Msa1088530:CDS |
| AGGTTGGTTAACGGGGCAAT+CGG | 0.525575 | 7_3:+1777813 | None:intergenic |
| GCAATCACGGTGACAGAGAG+AGG | 0.526214 | 7_3:-1774935 | Msa1088530:CDS |
| CCTGTCGACACAACTGGTGC+TGG | 0.527503 | 7_3:-1775152 | Msa1088530:CDS |
| GTTCTGCCCTTTAATTCACT+AGG | 0.534444 | 7_3:+1777681 | None:intergenic |
| CCAGCACCAGTTGTGTCGAC+AGG | 0.534814 | 7_3:+1775152 | None:intergenic |
| TTCTGGAAGAGGATATATGA+AGG | 0.535960 | 7_3:+1777753 | None:intergenic |
| AAAACAGAAACTTCTGGAAG+AGG | 0.538843 | 7_3:+1777742 | None:intergenic |
| TATACCACTTCGAGCAGCCT+CGG | 0.539494 | 7_3:+1775780 | None:intergenic |
| CGTGATTGCGCCACATACAT+TGG | 0.539771 | 7_3:+1774949 | None:intergenic |
| GACGGTGCATCAAAAGAGAC+TGG | 0.540843 | 7_3:+1776851 | None:intergenic |
| AGCTTCTAATTGTTACCGGT+GGG | 0.541169 | 7_3:-1775504 | Msa1088530:CDS |
| ATTGTTACCGGTGGGTCGGA+GGG | 0.542489 | 7_3:-1775496 | Msa1088530:CDS |
| TTCATCTGCATTTATAAGCA+AGG | 0.542858 | 7_3:-1776762 | Msa1088530:intron |
| CCGAGGGAACTCTTTCAGGT+TGG | 0.543468 | 7_3:+1777797 | None:intergenic |
| GATGGTGTTCATACAGTCCA+TGG | 0.546716 | 7_3:-1777395 | Msa1088530:CDS |
| ATAGAATTCGTGTCAACAGC+GGG | 0.552082 | 7_3:-1776875 | Msa1088530:CDS |
| ACTCATTGGGAGGAACTACA+AGG | 0.552126 | 7_3:-1777464 | Msa1088530:CDS |
| TTCTGCCCTTTAATTCACTA+GGG | 0.555314 | 7_3:+1777682 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.556296 | 7_3:-1776786 | Msa1088530:CDS |
| GAGATGCAAAACCATGGGAA+AGG | 0.558757 | 7_3:-1777863 | Msa1088530:CDS |
| ATCTATTGGTACTTGTAGGT+CGG | 0.559628 | 7_3:-1777222 | Msa1088530:CDS |
| ACTACCACAACAACGGAGAT+CGG | 0.562051 | 7_3:+1777719 | None:intergenic |
| CAATGTATGTGGCGCAATCA+CGG | 0.563805 | 7_3:-1774948 | Msa1088530:CDS |
| ACAGCGGTTGACGGGTTCCG+AGG | 0.564943 | 7_3:+1777780 | None:intergenic |
| AACGTTGACTGACTGTGACT+GGG | 0.566924 | 7_3:+1777132 | None:intergenic |
| GGTCAGAGGACTCCATTCCA+TGG | 0.570788 | 7_3:+1777378 | None:intergenic |
| CAATTTCTGTACTCATTGGG+AGG | 0.573563 | 7_3:-1777474 | Msa1088530:CDS |
| AACAACCTCCTATCAATACC+TGG | 0.575621 | 7_3:+1777431 | None:intergenic |
| TCTAATTGTTACCGGTGGGT+CGG | 0.577804 | 7_3:-1775500 | Msa1088530:CDS |
| TTTGATTGCTGAGCAATGCA+AGG | 0.578974 | 7_3:-1775893 | Msa1088530:CDS |
| CTCCTATCAATACCTGGAGG+AGG | 0.580181 | 7_3:+1777437 | None:intergenic |
| CAATCACGGTGACAGAGAGA+GGG | 0.582107 | 7_3:-1774934 | Msa1088530:CDS |
| CTCCTCCAGGTATTGATAGG+AGG | 0.583506 | 7_3:-1777436 | Msa1088530:CDS |
| CTGCAACAAAACAAGTGGAC+TGG | 0.590341 | 7_3:-1776921 | Msa1088530:CDS |
| TCAAAACAACGAGATCAAAA+GGG | 0.590796 | 7_3:+1774717 | None:intergenic |
| GGCTTCAAGAGGCTGGTCAG+AGG | 0.590950 | 7_3:+1777364 | None:intergenic |
| TCTGGAAGAGGATATATGAA+GGG | 0.593723 | 7_3:+1777754 | None:intergenic |
| CCAACCTGAAAGAGTTCCCT+CGG | 0.596388 | 7_3:-1777797 | Msa1088530:CDS |
| TCTACAACCCTCCGACCCAC+CGG | 0.597847 | 7_3:+1775489 | None:intergenic |
| AGAGTCTTTAGCAATTCTCA+AGG | 0.601079 | 7_3:+1775855 | None:intergenic |
| GGCACTATGGCCATCAGCCG+AGG | 0.605030 | 7_3:-1775797 | Msa1088530:CDS |
| GAATTACCTCGAAAATACTT+GGG | 0.606713 | 7_3:+1775087 | None:intergenic |
| GATGCAAAACCATGGGAAAG+GGG | 0.608412 | 7_3:-1777861 | Msa1088530:CDS |
| GGGAAGAGATGCAAAACCAT+GGG | 0.608642 | 7_3:-1777868 | Msa1088530:CDS |
| CTACAAGGGATACCTCCTCC+AGG | 0.609593 | 7_3:-1777449 | Msa1088530:CDS |
| TGTTCATACAGTCCATGGAA+TGG | 0.614560 | 7_3:-1777390 | Msa1088530:CDS |
| GCTAGCTGCAACAAAACAAG+TGG | 0.614874 | 7_3:-1776926 | Msa1088530:CDS |
| CAGCGGTTGACGGGTTCCGA+GGG | 0.618388 | 7_3:+1777781 | None:intergenic |
| GCTACTACAAACGTGGCAGT+TGG | 0.618953 | 7_3:-1776803 | Msa1088530:CDS |
| GGTTACAAGAAAGCTATTGG+TGG | 0.620203 | 7_3:-1776827 | Msa1088530:CDS |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.621474 | 7_3:-1776785 | Msa1088530:CDS |
| AGGGAAGAGATGCAAAACCA+TGG | 0.625245 | 7_3:-1777869 | Msa1088530:CDS |
| AAACCAACCTGCAATATGAA+GGG | 0.629222 | 7_3:+1777645 | None:intergenic |
| CTGGAAGAGGATATATGAAG+GGG | 0.635714 | 7_3:+1777755 | None:intergenic |
| ATAGCTTTCTTGTAACCAGA+CGG | 0.637866 | 7_3:+1776833 | None:intergenic |
| CAAACTTGAATGGCTTCAAG+AGG | 0.638894 | 7_3:+1777353 | None:intergenic |
| GAAGAAACCTTTAATCCAAG+AGG | 0.642317 | 7_3:+1777320 | None:intergenic |
| AAGGGCAGAACTACTCTCGA+TGG | 0.643882 | 7_3:-1777669 | Msa1088530:CDS |
| TCAGCCGAGGCTGCTCGAAG+TGG | 0.649399 | 7_3:-1775784 | Msa1088530:CDS |
| ACGGGGCAATCGGAAGTCTG+AGG | 0.651239 | 7_3:+1777823 | None:intergenic |
| AATCACGGTGACAGAGAGAG+GGG | 0.661525 | 7_3:-1774933 | Msa1088530:CDS |
| GATAGAATTCGTGTCAACAG+CGG | 0.667090 | 7_3:-1776876 | Msa1088530:CDS |
| AGATGAATATGGGCATACGT+TGG | 0.673369 | 7_3:-1776203 | Msa1088530:CDS |
| GATATATGAAGGGGTGACAG+CGG | 0.679219 | 7_3:+1777764 | None:intergenic |
| CTCATTGGGAGGAACTACAA+GGG | 0.696925 | 7_3:-1777463 | Msa1088530:CDS |
| AATTGTCCATGATTGAACAG+TGG | 0.709826 | 7_3:-1774613 | Msa1088530:three_prime_UTR |
| GTATAGCACTACCACAACAA+CGG | 0.718113 | 7_3:+1777712 | None:intergenic |
| TGGTGGTGCTACTACAAACG+TGG | 0.727262 | 7_3:-1776810 | Msa1088530:CDS |
| AACCTCCTATCAATACCTGG+AGG | 0.743647 | 7_3:+1777434 | None:intergenic |
| GGGTTGTAGATATTACACCC+AGG | 0.754805 | 7_3:-1775476 | Msa1088530:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAACAATAAGAAAA+GGG | + | chr7_3:1776090-1776109 | None:intergenic | 10.0% |
| !! | AGTACTAAATTAAAATTATA+CGG | + | chr7_3:1776530-1776549 | None:intergenic | 10.0% |
| !! | TAATAACCATGATTATAAAT+AGG | - | chr7_3:1775478-1775497 | Msa1088530:CDS | 15.0% |
| !! | CTTAATTTAACAATAAGAAA+AGG | + | chr7_3:1776091-1776110 | None:intergenic | 15.0% |
| !! | TCCTAAAAATATTAGAGTAT+TGG | - | chr7_3:1775306-1775325 | Msa1088530:intron | 20.0% |
| !!! | CCTAAAAATATTAGAGTATT+GGG | - | chr7_3:1775307-1775326 | Msa1088530:intron | 20.0% |
| !! | AATCAACCTATTTATAATCA+TGG | + | chr7_3:1775487-1775506 | None:intergenic | 20.0% |
| !!! | TAGGTTGATTTTAATTTTTC+AGG | - | chr7_3:1775497-1775516 | Msa1088530:CDS | 20.0% |
| !!! | TATTTATTGACTTGGTTATT+TGG | - | chr7_3:1775755-1775774 | Msa1088530:CDS | 20.0% |
| !!! | ATTTATTACACTTTTCTGAA+TGG | - | chr7_3:1775854-1775873 | Msa1088530:CDS | 20.0% |
| !! | AAAATAGAAAATACGAGTAA+AGG | + | chr7_3:1775990-1776009 | None:intergenic | 20.0% |
| !! | AGTAAATACATGATATTTGT+AGG | + | chr7_3:1776131-1776150 | None:intergenic | 20.0% |
| !! | TAAAATTCAGAATACTACTA+CGG | + | chr7_3:1776185-1776204 | None:intergenic | 20.0% |
| !! | GAAAATAATGTTGATATATC+TGG | - | chr7_3:1776314-1776333 | Msa1088530:intron | 20.0% |
| !! | AAAATTTACCTTTATGACAT+CGG | + | chr7_3:1776745-1776764 | None:intergenic | 20.0% |
| !! | CAAAGAAAATAATGAAATGA+GGG | + | chr7_3:1777086-1777105 | None:intergenic | 20.0% |
| ! | TATTGTTTCAATTCTGTTTG+CGG | - | chr7_3:1774935-1774954 | Msa1088530:CDS | 25.0% |
| ! | TTATCAATTTCTGTACTCAT+TGG | - | chr7_3:1775002-1775021 | Msa1088530:intron | 25.0% |
| ! | TATCAATTTCTGTACTCATT+GGG | - | chr7_3:1775003-1775022 | Msa1088530:intron | 25.0% |
| ! | ACATTGTATATGCATGTATT+GGG | + | chr7_3:1775210-1775229 | None:intergenic | 25.0% |
| ! | AACATTGTATATGCATGTAT+TGG | + | chr7_3:1775211-1775230 | None:intergenic | 25.0% |
| !! | CCCAATACTCTAATATTTTT+AGG | + | chr7_3:1775310-1775329 | None:intergenic | 25.0% |
| !!! | AAAAATATTAGAGTATTGGG+AGG | - | chr7_3:1775310-1775329 | Msa1088530:intron | 25.0% |
| !! | TCTATGTCTATTTATTGACT+TGG | - | chr7_3:1775747-1775766 | Msa1088530:CDS | 25.0% |
| ! | CTTAATGAACAAATCAAACA+TGG | + | chr7_3:1775806-1775825 | None:intergenic | 25.0% |
| ! | TTAAGAAATCTATGATGTGT+TGG | - | chr7_3:1775821-1775840 | Msa1088530:CDS | 25.0% |
| ! | TAAGAAATCTATGATGTGTT+GGG | - | chr7_3:1775822-1775841 | Msa1088530:CDS | 25.0% |
| ! | TAAAGTCGTTTCTATTTGAT+GGG | + | chr7_3:1776018-1776037 | None:intergenic | 25.0% |
| ! | TTAAAGTCGTTTCTATTTGA+TGG | + | chr7_3:1776019-1776038 | None:intergenic | 25.0% |
| ! | AACAATAAGAAAAGGGAAAA+AGG | + | chr7_3:1776083-1776102 | None:intergenic | 25.0% |
| ! | AAAATTCAGAATACTACTAC+GGG | + | chr7_3:1776184-1776203 | None:intergenic | 25.0% |
| !! | ATTCTGAATTTTAGACATGA+TGG | - | chr7_3:1776192-1776211 | Msa1088530:CDS | 25.0% |
| ! | ATTATACGGACTTAAACTAT+CGG | + | chr7_3:1776516-1776535 | None:intergenic | 25.0% |
| !!! | TTTAATTTAGTACTGATTGC+AGG | - | chr7_3:1776536-1776555 | Msa1088530:intron | 25.0% |
| ! | ATATTCCATTATGGTTTCAT+CGG | - | chr7_3:1776564-1776583 | Msa1088530:intron | 25.0% |
| !!! | ATTACTTTTTTGATTGATCG+AGG | - | chr7_3:1776894-1776913 | Msa1088530:CDS | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | chr7_3:1776924-1776943 | None:intergenic | 25.0% |
| ! | GCAAAGAAAATAATGAAATG+AGG | + | chr7_3:1777087-1777106 | None:intergenic | 25.0% |
| !! | GATTACTAAATTTTTGTGCA+GGG | - | chr7_3:1777271-1777290 | Msa1088530:intron | 25.0% |
| AAATAAAGAATACAACCGAC+CGG | + | chr7_3:1774871-1774890 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGACAATGACTGA+TGG | - | chr7_3:1775067-1775086 | Msa1088530:intron | 30.0% |
| !! | ATTTGCTATTCTCTGACTTA+AGG | - | chr7_3:1775234-1775253 | Msa1088530:intron | 30.0% |
| !! | TTTGCTATTCTCTGACTTAA+GGG | - | chr7_3:1775235-1775254 | Msa1088530:intron | 30.0% |
| GCATGGAACTCATAAATTTA+TGG | - | chr7_3:1775371-1775390 | Msa1088530:intron | 30.0% | |
| ATGGAATAGAGAAGCTAATA+AGG | - | chr7_3:1775390-1775409 | Msa1088530:intron | 30.0% | |
| GTTATTACTATATGATCACG+TGG | + | chr7_3:1775465-1775484 | None:intergenic | 30.0% | |
| TTCATCTGCATTTATAAGCA+AGG | - | chr7_3:1775718-1775737 | Msa1088530:intron | 30.0% | |
| GAATGTAACATTGTCATGTT+CGG | - | chr7_3:1775948-1775967 | Msa1088530:intron | 30.0% | |
| AATGTAACATTGTCATGTTC+GGG | - | chr7_3:1775949-1775968 | Msa1088530:intron | 30.0% | |
| AAAAGGGAAAAAGGTAGAAT+GGG | + | chr7_3:1776074-1776093 | None:intergenic | 30.0% | |
| TTTACTTGTAGATTGTACCT+AGG | - | chr7_3:1776145-1776164 | Msa1088530:CDS | 30.0% | |
| !! | TACGTTGGCTGATATTTTAA+AGG | - | chr7_3:1776292-1776311 | Msa1088530:intron | 30.0% |
| TTCTAATTTCAACAACGCAT+TGG | - | chr7_3:1776349-1776368 | Msa1088530:intron | 30.0% | |
| ! | TTTTGTACACTTAAAGCTGA+CGG | - | chr7_3:1776373-1776392 | Msa1088530:intron | 30.0% |
| TGAACAGAGATGGAAATTAA+AGG | + | chr7_3:1776487-1776506 | None:intergenic | 30.0% | |
| CAGGCTAAAATATTCCATTA+TGG | - | chr7_3:1776555-1776574 | Msa1088530:intron | 30.0% | |
| GAAAAAAGAATGACATGCAA+TGG | + | chr7_3:1776814-1776833 | None:intergenic | 30.0% | |
| ACAATTAGAAGCTTGAGATT+AGG | + | chr7_3:1776969-1776988 | None:intergenic | 30.0% | |
| AAATCCGAGTTAAATGACTT+TGG | + | chr7_3:1777038-1777057 | None:intergenic | 30.0% | |
| ! | CGGATTTTTATTGTCTGAAT+AGG | - | chr7_3:1777051-1777070 | Msa1088530:intron | 30.0% |
| TTGCTCTTTATTCTGATGAA+TGG | - | chr7_3:1777103-1777122 | Msa1088530:CDS | 30.0% | |
| ! | CGATTACTAAATTTTTGTGC+AGG | - | chr7_3:1777270-1777289 | Msa1088530:intron | 30.0% |
| !! | ATTTTTGTGCAGGGTTTTAA+AGG | - | chr7_3:1777280-1777299 | Msa1088530:intron | 30.0% |
| GAATTACCTCGAAAATACTT+GGG | + | chr7_3:1777396-1777415 | None:intergenic | 30.0% | |
| TGAATTACCTCGAAAATACT+TGG | + | chr7_3:1777397-1777416 | None:intergenic | 30.0% | |
| TTATATTTCGCCAATGTATG+TGG | - | chr7_3:1777521-1777540 | Msa1088530:intron | 30.0% | |
| CCTATATTGCATAAAATTGC+AGG | + | chr7_3:1777604-1777623 | None:intergenic | 30.0% | |
| ! | CCTGCAATTTTATGCAATAT+AGG | - | chr7_3:1777601-1777620 | Msa1088530:intron | 30.0% |
| ATGTAATATCTGTTGACACA+TGG | - | chr7_3:1777642-1777661 | Msa1088530:intron | 30.0% | |
| AACAGATCAATATGTTGAGT+TGG | - | chr7_3:1777736-1777755 | Msa1088530:CDS | 30.0% | |
| ACAGATCAATATGTTGAGTT+GGG | - | chr7_3:1777737-1777756 | Msa1088530:CDS | 30.0% | |
| TCAAAACAACGAGATCAAAA+GGG | + | chr7_3:1777766-1777785 | None:intergenic | 30.0% | |
| TTCAAAACAACGAGATCAAA+AGG | + | chr7_3:1777767-1777786 | None:intergenic | 30.0% | |
| ! | GTAGAAACTATTTTCATGTG+TGG | - | chr7_3:1777803-1777822 | Msa1088530:CDS | 30.0% |
| ! | TATTTTCATGTGTGGATGTA+AGG | - | chr7_3:1777811-1777830 | Msa1088530:CDS | 30.0% |
| !! | AACTCTTTCAGGTTGGTTAA+CGG | + | chr7_3:1774679-1774698 | None:intergenic | 35.0% |
| TCTGGAAGAGGATATATGAA+GGG | + | chr7_3:1774729-1774748 | None:intergenic | 35.0% | |
| ! | TTCTGGAAGAGGATATATGA+AGG | + | chr7_3:1774730-1774749 | None:intergenic | 35.0% |
| ! | AAAACAGAAACTTCTGGAAG+AGG | + | chr7_3:1774741-1774760 | None:intergenic | 35.0% |
| TCCTAACCCTAGTGAATTAA+AGG | - | chr7_3:1774792-1774811 | Msa1088530:three_prime_UTR | 35.0% | |
| CCTAACCCTAGTGAATTAAA+GGG | - | chr7_3:1774793-1774812 | Msa1088530:three_prime_UTR | 35.0% | |
| TTCTGCCCTTTAATTCACTA+GGG | + | chr7_3:1774801-1774820 | None:intergenic | 35.0% | |
| AAACCAACCTGCAATATGAA+GGG | + | chr7_3:1774838-1774857 | None:intergenic | 35.0% | |
| GAAGAAACCTTTAATCCAAG+AGG | + | chr7_3:1775163-1775182 | None:intergenic | 35.0% | |
| ATGCATGTATTGGGATGAAA+AGG | + | chr7_3:1775201-1775220 | None:intergenic | 35.0% | |
| ATCTATTGGTACTTGTAGGT+CGG | - | chr7_3:1775258-1775277 | Msa1088530:intron | 35.0% | |
| !! | AATATTAGAGTATTGGGAGG+AGG | - | chr7_3:1775313-1775332 | Msa1088530:intron | 35.0% |
| ATAGCTTTCTTGTAACCAGA+CGG | + | chr7_3:1775650-1775669 | None:intergenic | 35.0% | |
| TCTGGTTACAAGAAAGCTAT+TGG | - | chr7_3:1775650-1775669 | Msa1088530:intron | 35.0% | |
| GGTTTCTTGTTACTATCTAC+AGG | - | chr7_3:1775776-1775795 | Msa1088530:CDS | 35.0% | |
| AAAGGGAAAAAGGTAGAATG+GGG | + | chr7_3:1776073-1776092 | None:intergenic | 35.0% | |
| GAAAAGGGAAAAAGGTAGAA+TGG | + | chr7_3:1776075-1776094 | None:intergenic | 35.0% | |
| !! | CGGGAAGTATTATTATTCCT+AGG | + | chr7_3:1776165-1776184 | None:intergenic | 35.0% |
| ! | AGACATGATGGAATCTATGT+TGG | - | chr7_3:1776204-1776223 | Msa1088530:CDS | 35.0% |
| ATCTGATCCAACCTAAAACA+CGG | + | chr7_3:1776261-1776280 | None:intergenic | 35.0% | |
| ! | TAGGTTGGATCAGATGAATA+TGG | - | chr7_3:1776266-1776285 | Msa1088530:intron | 35.0% |
| AGGTTGGATCAGATGAATAT+GGG | - | chr7_3:1776267-1776286 | Msa1088530:intron | 35.0% | |
| TCAAACCGATGAAACCATAA+TGG | + | chr7_3:1776572-1776591 | None:intergenic | 35.0% | |
| AGAGTCTTTAGCAATTCTCA+AGG | + | chr7_3:1776628-1776647 | None:intergenic | 35.0% | |
| GTATGATCCGAAATTGAGAT+TGG | - | chr7_3:1776662-1776681 | Msa1088530:intron | 35.0% | |
| CATAGTGCCAATCTCAATTT+CGG | + | chr7_3:1776672-1776691 | None:intergenic | 35.0% | |
| GAAGTGGTATAATGAGCATA+TGG | - | chr7_3:1776712-1776731 | Msa1088530:intron | 35.0% | |
| GAAGCTTGAGATTAGGATTA+GGG | + | chr7_3:1776962-1776981 | None:intergenic | 35.0% | |
| AGAAGCTTGAGATTAGGATT+AGG | + | chr7_3:1776963-1776982 | None:intergenic | 35.0% | |
| CTCAAGCTTCTAATTGTTAC+CGG | - | chr7_3:1776972-1776991 | Msa1088530:intron | 35.0% | |
| CTTGCCAAAGTCATTTAACT+CGG | - | chr7_3:1777031-1777050 | Msa1088530:intron | 35.0% | |
| !! | TGATGAATGGACTGAAATGT+TGG | - | chr7_3:1777116-1777135 | Msa1088530:CDS | 35.0% |
| AGAAAAAAGTTGCGAGTGTT+TGG | - | chr7_3:1777447-1777466 | Msa1088530:CDS | 35.0% | |
| ! | TGGCGAAATATAACGCTTTT+TGG | + | chr7_3:1777514-1777533 | None:intergenic | 35.0% |
| GCTATCAAAACAAAGTCAGA+AGG | + | chr7_3:1777677-1777696 | None:intergenic | 35.0% | |
| GGTGAAAAACAATTGTGTGA+TGG | - | chr7_3:1777832-1777851 | Msa1088530:CDS | 35.0% | |
| AGATGCAAAACCATGGGAAA+GGG | - | chr7_3:1774618-1774637 | Msa1088530:three_prime_UTR | 40.0% | |
| !! | ACTCTTTCAGGTTGGTTAAC+GGG | + | chr7_3:1774678-1774697 | None:intergenic | 40.0% |
| CTGGAAGAGGATATATGAAG+GGG | + | chr7_3:1774728-1774747 | None:intergenic | 40.0% | |
| GATCGGAAAACAGAAACTTC+TGG | + | chr7_3:1774747-1774766 | None:intergenic | 40.0% | |
| GTATAGCACTACCACAACAA+CGG | + | chr7_3:1774771-1774790 | None:intergenic | 40.0% | |
| CCCTTTAATTCACTAGGGTT+AGG | + | chr7_3:1774796-1774815 | None:intergenic | 40.0% | |
| GTTCTGCCCTTTAATTCACT+AGG | + | chr7_3:1774802-1774821 | None:intergenic | 40.0% | |
| GAAACCAACCTGCAATATGA+AGG | + | chr7_3:1774839-1774858 | None:intergenic | 40.0% | |
| !! | GGTTGGTTTCAATTTCGATC+CGG | - | chr7_3:1774849-1774868 | Msa1088530:three_prime_UTR | 40.0% |
| CAATTTCTGTACTCATTGGG+AGG | - | chr7_3:1775006-1775025 | Msa1088530:intron | 40.0% | |
| AACAACCTCCTATCAATACC+TGG | + | chr7_3:1775052-1775071 | None:intergenic | 40.0% | |
| TGTTCATACAGTCCATGGAA+TGG | - | chr7_3:1775090-1775109 | Msa1088530:intron | 40.0% | |
| CAAACTTGAATGGCTTCAAG+AGG | + | chr7_3:1775130-1775149 | None:intergenic | 40.0% | |
| ATTGGGATGAAAAGGATGAC+TGG | + | chr7_3:1775193-1775212 | None:intergenic | 40.0% | |
| CTCTGACTTAAGGGATCTAT+TGG | - | chr7_3:1775244-1775263 | Msa1088530:intron | 40.0% | |
| AGGGATCTATTGGTACTTGT+AGG | - | chr7_3:1775254-1775273 | Msa1088530:intron | 40.0% | |
| TCATGGTTATAGTACTTGCC+TGG | + | chr7_3:1775434-1775453 | None:intergenic | 40.0% | |
| ATCACGTGGACACTTAATCA+TGG | + | chr7_3:1775451-1775470 | None:intergenic | 40.0% | |
| CCTTCTGTTATGAGATCATC+AGG | + | chr7_3:1775535-1775554 | None:intergenic | 40.0% | |
| CCTGATGATCTCATAACAGA+AGG | - | chr7_3:1775532-1775551 | Msa1088530:CDS | 40.0% | |
| !!! | AGTGGACTGGTTGTTTGTTT+TGG | - | chr7_3:1775572-1775591 | Msa1088530:CDS | 40.0% |
| GATAGAATTCGTGTCAACAG+CGG | - | chr7_3:1775604-1775623 | Msa1088530:CDS | 40.0% | |
| ATAGAATTCGTGTCAACAGC+GGG | - | chr7_3:1775605-1775624 | Msa1088530:intron | 40.0% | |
| GGTTACAAGAAAGCTATTGG+TGG | - | chr7_3:1775653-1775672 | Msa1088530:intron | 40.0% | |
| ACTCCATGAAAAGTGAGCTT+GGG | - | chr7_3:1775926-1775945 | Msa1088530:intron | 40.0% | |
| !! | ATTCCCAAGCTCACTTTTCA+TGG | + | chr7_3:1775932-1775951 | None:intergenic | 40.0% |
| ! | TGGGTAAGTTATGGTTGGTT+AGG | + | chr7_3:1776044-1776063 | None:intergenic | 40.0% |
| GGAAATGGGTAAGTTATGGT+TGG | + | chr7_3:1776049-1776068 | None:intergenic | 40.0% | |
| ! | CTCTTTACCATCCGTGTTTT+AGG | - | chr7_3:1776247-1776266 | Msa1088530:intron | 40.0% |
| !! | TTACCATCCGTGTTTTAGGT+TGG | - | chr7_3:1776251-1776270 | Msa1088530:intron | 40.0% |
| AGATGAATATGGGCATACGT+TGG | - | chr7_3:1776277-1776296 | Msa1088530:intron | 40.0% | |
| !! | TCCTAGTGCTGATTTGAATC+TGG | - | chr7_3:1776423-1776442 | Msa1088530:intron | 40.0% |
| TCCAGATTCAAATCAGCACT+AGG | + | chr7_3:1776427-1776446 | None:intergenic | 40.0% | |
| TGATCATGACCTCATCAAGA+AGG | - | chr7_3:1776459-1776478 | Msa1088530:intron | 40.0% | |
| !! | TTAAAGGCACCTTCTTGATG+AGG | + | chr7_3:1776471-1776490 | None:intergenic | 40.0% |
| ! | TCGGTCTTTTTGAACAGAGA+TGG | + | chr7_3:1776497-1776516 | None:intergenic | 40.0% |
| TTTGATTGCTGAGCAATGCA+AGG | - | chr7_3:1776587-1776606 | Msa1088530:intron | 40.0% | |
| CGAAATTGAGATTGGCACTA+TGG | - | chr7_3:1776670-1776689 | Msa1088530:intron | 40.0% | |
| AAGCTTCTAATTGTTACCGG+TGG | - | chr7_3:1776975-1776994 | Msa1088530:intron | 40.0% | |
| AGCTTCTAATTGTTACCGGT+GGG | - | chr7_3:1776976-1776995 | Msa1088530:intron | 40.0% | |
| GACACTCAATGACGAATATC+AGG | - | chr7_3:1777171-1777190 | Msa1088530:CDS | 40.0% | |
| CAGGTTGTAAAACTTGAGCA+AGG | - | chr7_3:1777190-1777209 | Msa1088530:CDS | 40.0% | |
| !!! | CAGGGTTTTAAAGGCAAAGT+TGG | - | chr7_3:1777289-1777308 | Msa1088530:intron | 40.0% |
| !!! | GGTTTTAAAGGCAAAGTTGG+AGG | - | chr7_3:1777292-1777311 | Msa1088530:intron | 40.0% |
| ! | CTGGTGATGCATTTGTTAGT+GGG | - | chr7_3:1777347-1777366 | Msa1088530:CDS | 40.0% |
| ! | TTCTGACCCAAGTATTTTCG+AGG | - | chr7_3:1777387-1777406 | Msa1088530:CDS | 40.0% |
| !! | GTTGATGCAGCTATTTTGTG+TGG | - | chr7_3:1777471-1777490 | Msa1088530:CDS | 40.0% |
| ! | AGTCTTGTACTGCAACATTC+AGG | - | chr7_3:1777709-1777728 | Msa1088530:CDS | 40.0% |
| GAGATGCAAAACCATGGGAA+AGG | - | chr7_3:1774617-1774636 | Msa1088530:three_prime_UTR | 45.0% | |
| GATGCAAAACCATGGGAAAG+GGG | - | chr7_3:1774619-1774638 | Msa1088530:three_prime_UTR | 45.0% | |
| !! | CTCTTTCAGGTTGGTTAACG+GGG | + | chr7_3:1774677-1774696 | None:intergenic | 45.0% |
| GATATATGAAGGGGTGACAG+CGG | + | chr7_3:1774719-1774738 | None:intergenic | 45.0% | |
| ! | TTTTCCGATCTCCGTTGTTG+TGG | - | chr7_3:1774757-1774776 | Msa1088530:three_prime_UTR | 45.0% |
| ACTACCACAACAACGGAGAT+CGG | + | chr7_3:1774764-1774783 | None:intergenic | 45.0% | |
| GGTTTCAATTTCGATCCGGT+CGG | - | chr7_3:1774853-1774872 | Msa1088530:three_prime_UTR | 45.0% | |
| ! | CATTTGGGTGTGAAGTGTTC+AGG | + | chr7_3:1774963-1774982 | None:intergenic | 45.0% |
| CACTTCACACCCAAATGCAT+TGG | - | chr7_3:1774966-1774985 | Msa1088530:CDS | 45.0% | |
| ATCGACCTGCCAATGCATTT+GGG | + | chr7_3:1774978-1774997 | None:intergenic | 45.0% | |
| TATCGACCTGCCAATGCATT+TGG | + | chr7_3:1774979-1774998 | None:intergenic | 45.0% | |
| ACTCATTGGGAGGAACTACA+AGG | - | chr7_3:1775016-1775035 | Msa1088530:intron | 45.0% | |
| CTCATTGGGAGGAACTACAA+GGG | - | chr7_3:1775017-1775036 | Msa1088530:intron | 45.0% | |
| !! | TACCTCCTCCAGGTATTGAT+AGG | - | chr7_3:1775041-1775060 | Msa1088530:intron | 45.0% |
| AACCTCCTATCAATACCTGG+AGG | + | chr7_3:1775049-1775068 | None:intergenic | 45.0% | |
| GATGGTGTTCATACAGTCCA+TGG | - | chr7_3:1775085-1775104 | Msa1088530:intron | 45.0% | |
| CACACACGCACAAACTTGAA+TGG | + | chr7_3:1775140-1775159 | None:intergenic | 45.0% | |
| GTGTGTGCCTCTTGGATTAA+AGG | - | chr7_3:1775153-1775172 | Msa1088530:CDS | 45.0% | |
| ! | AACGTTGACTGACTGTGACT+GGG | + | chr7_3:1775351-1775370 | None:intergenic | 45.0% |
| TATAGTACTTGCCTGGACAC+AGG | + | chr7_3:1775427-1775446 | None:intergenic | 45.0% | |
| GCTAGCTGCAACAAAACAAG+TGG | - | chr7_3:1775554-1775573 | Msa1088530:CDS | 45.0% | |
| CTGCAACAAAACAAGTGGAC+TGG | - | chr7_3:1775559-1775578 | Msa1088530:CDS | 45.0% | |
| GCAGTTGGCATCTCTAAGTT+GGG | - | chr7_3:1775692-1775711 | Msa1088530:intron | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | - | chr7_3:1775693-1775712 | Msa1088530:intron | 45.0% | |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | - | chr7_3:1775694-1775713 | Msa1088530:intron | 45.0% |
| GACTCCATGAAAAGTGAGCT+TGG | - | chr7_3:1775925-1775944 | Msa1088530:CDS | 45.0% | |
| ! | TGTCATGTTCGGGCATTTTG+AGG | - | chr7_3:1775959-1775978 | Msa1088530:intron | 45.0% |
| GGGTGGAAATGGGTAAGTTA+TGG | + | chr7_3:1776053-1776072 | None:intergenic | 45.0% | |
| AGGTAGAATGGGGTGGAAAT+GGG | + | chr7_3:1776063-1776082 | None:intergenic | 45.0% | |
| AAGGTAGAATGGGGTGGAAA+TGG | + | chr7_3:1776064-1776083 | None:intergenic | 45.0% | |
| GATCCAACCTAAAACACGGA+TGG | + | chr7_3:1776257-1776276 | None:intergenic | 45.0% | |
| !! | GAGCGCAAGTTCTTGCTTTT+CGG | - | chr7_3:1776397-1776416 | Msa1088530:intron | 45.0% |
| GCATCTAGCCGATGTCATAA+AGG | - | chr7_3:1776734-1776753 | Msa1088530:intron | 45.0% | |
| TCTAATTGTTACCGGTGGGT+CGG | - | chr7_3:1776980-1776999 | Msa1088530:intron | 45.0% | |
| GGGTTGTAGATATTACACCC+AGG | - | chr7_3:1777004-1777023 | Msa1088530:intron | 45.0% | |
| TGACTTTGGCAAGCTTACCT+GGG | + | chr7_3:1777024-1777043 | None:intergenic | 45.0% | |
| ATGACTTTGGCAAGCTTACC+TGG | + | chr7_3:1777025-1777044 | None:intergenic | 45.0% | |
| GTTAAACCTGTCGACACAAC+TGG | - | chr7_3:1777322-1777341 | Msa1088530:intron | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | - | chr7_3:1777346-1777365 | Msa1088530:CDS | 45.0% |
| !! | ATGCAGCTATTTTGTGTGGC+AGG | - | chr7_3:1777475-1777494 | Msa1088530:CDS | 45.0% |
| ! | CTATTTTGTGTGGCAGGATG+AGG | - | chr7_3:1777481-1777500 | Msa1088530:CDS | 45.0% |
| CAATGTATGTGGCGCAATCA+CGG | - | chr7_3:1777532-1777551 | Msa1088530:intron | 45.0% | |
| ! | TGCAGGACAGCATCTTTTGT+AGG | + | chr7_3:1777587-1777606 | None:intergenic | 45.0% |
| GAATCTCTTCCCCTTTCCCA+TGG | + | chr7_3:1774631-1774650 | None:intergenic | 50.0% | |
| ! | AGGTTGGTTAACGGGGCAAT+CGG | + | chr7_3:1774670-1774689 | None:intergenic | 50.0% |
| CCAACCTGAAAGAGTTCCCT+CGG | - | chr7_3:1774683-1774702 | Msa1088530:three_prime_UTR | 50.0% | |
| AAGGGCAGAACTACTCTCGA+TGG | - | chr7_3:1774811-1774830 | Msa1088530:intron | 50.0% | |
| CGATGGTCCCTTCATATTGC+AGG | - | chr7_3:1774828-1774847 | Msa1088530:intron | 50.0% | |
| GGTCCCTTCATATTGCAGGT+TGG | - | chr7_3:1774832-1774851 | Msa1088530:intron | 50.0% | |
| ! | TCACACCCAAATGCATTGGC+AGG | - | chr7_3:1774970-1774989 | Msa1088530:CDS | 50.0% |
| CTCCTATCAATACCTGGAGG+AGG | + | chr7_3:1775046-1775065 | None:intergenic | 50.0% | |
| !! | CTCCTCCAGGTATTGATAGG+AGG | - | chr7_3:1775044-1775063 | Msa1088530:intron | 50.0% |
| CTTGAATGGCTTCAAGAGGC+TGG | + | chr7_3:1775126-1775145 | None:intergenic | 50.0% | |
| GGGATGAAAAGGATGACTGG+TGG | + | chr7_3:1775190-1775209 | None:intergenic | 50.0% | |
| ACTTGTAGGTCGGCGTTCAA+TGG | - | chr7_3:1775268-1775287 | Msa1088530:intron | 50.0% | |
| ! | CAACGTTGACTGACTGTGAC+TGG | + | chr7_3:1775352-1775371 | None:intergenic | 50.0% |
| CACAGTCAGTCAACGTTGCA+TGG | - | chr7_3:1775354-1775373 | Msa1088530:intron | 50.0% | |
| GACGGTGCATCAAAAGAGAC+TGG | + | chr7_3:1775632-1775651 | None:intergenic | 50.0% | |
| ! | GTCTCTTTTGATGCACCGTC+TGG | - | chr7_3:1775632-1775651 | Msa1088530:intron | 50.0% |
| !! | TGGTGGTGCTACTACAAACG+TGG | - | chr7_3:1775670-1775689 | Msa1088530:intron | 50.0% |
| GCTACTACAAACGTGGCAGT+TGG | - | chr7_3:1775677-1775696 | Msa1088530:intron | 50.0% | |
| GGCAGTTGGCATCTCTAAGT+TGG | - | chr7_3:1775691-1775710 | Msa1088530:intron | 50.0% | |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | - | chr7_3:1775695-1775714 | Msa1088530:intron | 50.0% |
| GGGAAAAAGGTAGAATGGGG+TGG | + | chr7_3:1776070-1776089 | None:intergenic | 50.0% | |
| TATACCACTTCGAGCAGCCT+CGG | + | chr7_3:1776703-1776722 | None:intergenic | 50.0% | |
| AATCGCTGTTAGCTGAACGC+TGG | + | chr7_3:1777255-1777274 | None:intergenic | 50.0% | |
| CGTGATTGCGCCACATACAT+TGG | + | chr7_3:1777534-1777553 | None:intergenic | 50.0% | |
| CAATCACGGTGACAGAGAGA+GGG | - | chr7_3:1777546-1777565 | Msa1088530:intron | 50.0% | |
| AATCACGGTGACAGAGAGAG+GGG | - | chr7_3:1777547-1777566 | Msa1088530:intron | 50.0% | |
| ! | CCGAGGGAACTCTTTCAGGT+TGG | + | chr7_3:1774686-1774705 | None:intergenic | 55.0% |
| GGTTCCGAGGGAACTCTTTC+AGG | + | chr7_3:1774690-1774709 | None:intergenic | 55.0% | |
| CTACAAGGGATACCTCCTCC+AGG | - | chr7_3:1775031-1775050 | Msa1088530:intron | 55.0% | |
| GGTCAGAGGACTCCATTCCA+TGG | + | chr7_3:1775105-1775124 | None:intergenic | 55.0% | |
| GTTTGTGCGTGTGTGCCTCT+TGG | - | chr7_3:1775145-1775164 | Msa1088530:CDS | 55.0% | |
| ATGCAGTACCTCCTGTGTCC+AGG | - | chr7_3:1775413-1775432 | Msa1088530:intron | 55.0% | |
| AGTACTTGCCTGGACACAGG+AGG | + | chr7_3:1775424-1775443 | None:intergenic | 55.0% | |
| AATTGTTACCGGTGGGTCGG+AGG | - | chr7_3:1776983-1777002 | Msa1088530:intron | 55.0% | |
| ATTGTTACCGGTGGGTCGGA+GGG | - | chr7_3:1776984-1777003 | Msa1088530:intron | 55.0% | |
| GCAATCACGGTGACAGAGAG+AGG | - | chr7_3:1777545-1777564 | Msa1088530:intron | 55.0% | |
| ACGGGGCAATCGGAAGTCTG+AGG | + | chr7_3:1774660-1774679 | None:intergenic | 60.0% | |
| AAGGGGTGACAGCGGTTGAC+GGG | + | chr7_3:1774711-1774730 | None:intergenic | 60.0% | |
| GAAGGGGTGACAGCGGTTGA+CGG | + | chr7_3:1774712-1774731 | None:intergenic | 60.0% | |
| ! | GGCTTCAAGAGGCTGGTCAG+AGG | + | chr7_3:1775119-1775138 | None:intergenic | 60.0% |
| TCTACAACCCTCCGACCCAC+CGG | + | chr7_3:1776994-1777013 | None:intergenic | 60.0% | |
| ! | CCAGCACCAGTTGTGTCGAC+AGG | + | chr7_3:1777331-1777350 | None:intergenic | 60.0% |
| CCTGTCGACACAACTGGTGC+TGG | - | chr7_3:1777328-1777347 | Msa1088530:CDS | 60.0% | |
| !! | CAGCGGTTGACGGGTTCCGA+GGG | + | chr7_3:1774702-1774721 | None:intergenic | 65.0% |
| !! | ACAGCGGTTGACGGGTTCCG+AGG | + | chr7_3:1774703-1774722 | None:intergenic | 65.0% |
| GGCACTATGGCCATCAGCCG+AGG | - | chr7_3:1776683-1776702 | Msa1088530:intron | 65.0% | |
| CTTCGAGCAGCCTCGGCTGA+TGG | + | chr7_3:1776696-1776715 | None:intergenic | 65.0% | |
| TCAGCCGAGGCTGCTCGAAG+TGG | - | chr7_3:1776696-1776715 | Msa1088530:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 1774613 | 1777889 | 1774613 | ID=Msa1088530;Name=Msa1088530 |
| chr7_3 | mRNA | 1774613 | 1777889 | 1774613 | ID=Msa1088530-mRNA-1;Parent=Msa1088530;Name=Msa1088530-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.77|0.6|1|0.77|0.7|10|238|508 |
| chr7_3 | exon | 1774613 | 1774819 | 1774613 | ID=Msa1088530-mRNA-1:exon:694;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1774849 | 1775005 | 1774849 | ID=Msa1088530-mRNA-1:exon:693;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1775094 | 1775210 | 1775094 | ID=Msa1088530-mRNA-1:exon:692;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1775477 | 1775623 | 1775477 | ID=Msa1088530-mRNA-1:exon:691;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1775747 | 1775944 | 1775747 | ID=Msa1088530-mRNA-1:exon:690;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1776075 | 1776233 | 1776075 | ID=Msa1088530-mRNA-1:exon:689;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1776763 | 1776951 | 1776763 | ID=Msa1088530-mRNA-1:exon:688;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1777076 | 1777246 | 1777076 | ID=Msa1088530-mRNA-1:exon:687;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1777328 | 1777510 | 1777328 | ID=Msa1088530-mRNA-1:exon:686;Parent=Msa1088530-mRNA-1 |
| chr7_3 | exon | 1777653 | 1777889 | 1777653 | ID=Msa1088530-mRNA-1:exon:685;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1777653 | 1777889 | 1777653 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1777328 | 1777510 | 1777328 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1777076 | 1777246 | 1777076 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1776763 | 1776951 | 1776763 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1776075 | 1776233 | 1776075 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1775747 | 1775944 | 1775747 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1775477 | 1775623 | 1775477 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1775094 | 1775210 | 1775094 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | CDS | 1774880 | 1775005 | 1774880 | ID=Msa1088530-mRNA-1:cds;Parent=Msa1088530-mRNA-1 |
| chr7_3 | three_prime_UTR | 1774849 | 1774879 | 1774849 | ID=Msa1088530-mRNA-1:three_prime_utr;Parent=Msa1088530-mRNA-1 |
| chr7_3 | three_prime_UTR | 1774613 | 1774819 | 1774613 | ID=Msa1088530-mRNA-1:three_prime_utr;Parent=Msa1088530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
