AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1249460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1249460 MtrunA17_Chr8g0365051 98.913 184 1 1 1 184 1 183 2.03e-124 350
Msa1249460 MtrunA17_Chr1g0147821 64.062 192 54 4 1 187 1 182 1.16e-53 171
Msa1249460 MtrunA17_Chr3g0139061 78.261 115 17 1 1 107 1 115 1.78e-50 163
Msa1249460 MtrunA17_Chr1g0210241 35.714 126 59 4 3 107 8 132 3.26e-11 61.6
Msa1249460 MtrunA17_Chr7g0263341 38.793 116 59 5 2 109 11 122 4.06e-11 61.6
Msa1249460 MtrunA17_Chr1g0192221 35.417 144 62 6 4 116 40 183 4.92e-11 61.2
Msa1249460 MtrunA17_Chr7g0269331 45.882 85 33 3 4 82 9 86 7.72e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1249460 AT4G31580.2 62.814 199 59 5 1 189 1 194 6.79e-54 172
Msa1249460 AT4G31580.1 62.814 199 59 5 1 189 1 194 6.79e-54 172
Msa1249460 AT1G23860.1 61.809 199 50 6 1 185 1 187 6.95e-53 169
Msa1249460 AT1G23860.2 61.809 199 50 6 1 185 1 187 6.95e-53 169
Msa1249460 AT2G24590.1 67.539 191 55 4 1 187 1 188 9.58e-53 169
Msa1249460 AT1G23860.3 60.541 185 52 5 1 185 1 164 1.27e-50 162
Msa1249460 AT1G23860.4 60.101 198 51 6 1 185 1 183 1.13e-49 161
Msa1249460 AT1G60650.2 38.889 126 64 4 2 114 12 137 3.79e-14 70.5
Msa1249460 AT1G60650.1 38.889 126 64 4 2 114 12 137 3.79e-14 70.5
Msa1249460 AT1G02840.1 54.795 73 27 2 4 70 9 81 7.79e-14 69.7
Msa1249460 AT1G02840.4 54.795 73 27 2 4 70 9 81 9.00e-14 69.3
Msa1249460 AT1G02840.5 54.795 73 27 2 4 70 9 81 9.00e-14 69.3
Msa1249460 AT1G02840.3 54.795 73 27 2 4 70 9 81 9.00e-14 69.3
Msa1249460 AT1G02840.2 54.795 73 27 2 4 70 9 81 2.28e-13 68.2
Msa1249460 AT2G37340.1 39.130 115 50 4 2 107 11 114 2.22e-12 65.5
Msa1249460 AT4G02430.1 49.315 73 31 2 4 70 9 81 6.06e-12 62.8
Msa1249460 AT4G02430.3 49.315 73 31 2 4 70 9 81 2.39e-11 62.4
Msa1249460 AT4G02430.4 49.315 73 31 2 4 70 9 81 4.13e-11 62.0
Msa1249460 AT3G53500.2 35.065 154 61 6 2 132 11 148 9.60e-11 60.8

Find 136 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGGGTTTATATTGGGAATT+TGG 0.194118 8_2:+44120064 Msa1249460:CDS
TCTTGACAGTTTAGTGGTTT+TGG 0.208237 8_2:+44124258 Msa1249460:three_prime_UTR
CTGCGATCATAACCATAATT+TGG 0.247382 8_2:-44121380 None:intergenic
CTTCCACGACGCCGATAATA+AGG 0.252904 8_2:-44121356 None:intergenic
TCATGAAATCGAATCAAAAT+TGG 0.260324 8_2:+44123420 Msa1249460:three_prime_UTR
ACTAGTTTCAGCTTCCTTAC+TGG 0.268788 8_2:+44123998 Msa1249460:three_prime_UTR
TGAACAATTCTTTCACTATC+AGG 0.274600 8_2:+44119914 Msa1249460:five_prime_UTR
GGAGGAGGAGGCCGTGGTGG+TGG 0.279198 8_2:+44121206 Msa1249460:CDS
TTGGATTTGTGGAATCAAAA+AGG 0.289960 8_2:+44123606 Msa1249460:three_prime_UTR
AGAATGGCTAGGGTTTATAT+TGG 0.332092 8_2:+44120056 Msa1249460:exon
GCAATCAACATGCAAACATT+TGG 0.346411 8_2:-44123518 None:intergenic
GTGGTTAAATTGATGATTGC+TGG 0.354538 8_2:+44123493 Msa1249460:three_prime_UTR
GGTGGGCGCGGCGGACGCGG+AGG 0.364130 8_2:+44121224 Msa1249460:CDS
GGAGGCCGTGGTGGTGGGCG+CGG 0.373135 8_2:+44121212 Msa1249460:CDS
GTGGGCGCGGCGGACGCGGA+GGG 0.379777 8_2:+44121225 Msa1249460:CDS
TAGTCTCCATGGTACGCTAT+TGG 0.382791 8_2:+44123564 Msa1249460:three_prime_UTR
CCTTGATGCAATTCATGAAT+TGG 0.384043 8_2:+44120996 Msa1249460:CDS
TATTCTCCATGCTAAACTCT+TGG 0.392744 8_2:+44123874 Msa1249460:three_prime_UTR
AGTCTCCATGGTACGCTATT+GGG 0.394858 8_2:+44123565 Msa1249460:three_prime_UTR
CTTGGCAAATCTCAGTCAAC+TGG 0.402620 8_2:-44123758 None:intergenic
GACTGCAATGACCGACATCT+TGG 0.403451 8_2:+44123587 Msa1249460:three_prime_UTR
AGTGGAGGAGGAGGAGGCCG+TGG 0.407053 8_2:+44121200 Msa1249460:CDS
GTGTGTATGGTGTTCTTCGC+AGG 0.411496 8_2:+44120126 Msa1249460:CDS
GAATGGCTAGGGTTTATATT+GGG 0.412848 8_2:+44120057 Msa1249460:exon
CGTCGTGGAAGTCCAAATTA+TGG 0.413494 8_2:+44121368 Msa1249460:CDS
ATTCTGTGTGGTTAAATAGA+TGG 0.415052 8_2:+44123795 Msa1249460:three_prime_UTR
ATTCTCCATGCTAAACTCTT+GGG 0.417792 8_2:+44123875 Msa1249460:three_prime_UTR
GGTGGTGGGCGCGGCGGACG+CGG 0.419052 8_2:+44121221 Msa1249460:CDS
TAGCTATCACCTTTAGCTAC+AGG 0.421755 8_2:+44124050 Msa1249460:three_prime_UTR
TTCAACTTCACCAATTCAAA+AGG 0.439192 8_2:-44123686 None:intergenic
GGTTCACGAGGCCTAGGAAA+TGG 0.440238 8_2:+44121314 Msa1249460:CDS
GAGGAGGAGGCCGTGGTGGT+GGG 0.441460 8_2:+44121207 Msa1249460:CDS
TGGGCGCGGCGGACGCGGAG+GGG 0.443303 8_2:+44121226 Msa1249460:CDS
GTGGTGAAACAATGCTGTTT+TGG 0.444648 8_2:-44123201 None:intergenic
CAATCGTACCCGTTGGCATA+AGG 0.448563 8_2:-44122686 None:intergenic
GAGAATAACGGTATGGAGGA+GGG 0.452563 8_2:-44122652 None:intergenic
GAAGATGAATTTCGTGTGTA+TGG 0.455018 8_2:+44120113 Msa1249460:CDS
GAAGTCCTAGTCCTTATTAT+CGG 0.463894 8_2:+44121345 Msa1249460:CDS
CGAGAATAACGGTATGGAGG+AGG 0.468353 8_2:-44122653 None:intergenic
TGCTATGAATGTGGTGAACC+TGG 0.469840 8_2:+44121260 Msa1249460:CDS
CGCGGTGGTTCACGAGGCCT+AGG 0.470108 8_2:+44121308 Msa1249460:CDS
GAATTGGACAAGTTTAAAGA+TGG 0.473825 8_2:+44123367 Msa1249460:three_prime_UTR
AATTCTAAGAGTGGAGGAGG+AGG 0.476429 8_2:+44121191 Msa1249460:CDS
CACCACATTCATAGCATTTG+AGG 0.476814 8_2:-44121253 None:intergenic
TTTGAATTGGTGAAGTTGAA+TGG 0.476929 8_2:+44123689 Msa1249460:three_prime_UTR
GTTGACTAAAACTGCAACAT+CGG 0.477225 8_2:+44123294 Msa1249460:CDS
GTGAACCTGGACACTTTGCT+CGG 0.477269 8_2:+44121273 Msa1249460:CDS
TCTAAGAGTGGAGGAGGAGG+AGG 0.479968 8_2:+44121194 Msa1249460:CDS
GTCCGCCGCGCCCACCACCA+CGG 0.480779 8_2:-44121217 None:intergenic
AAGGAAGCTGAAACTAGTTA+AGG 0.482929 8_2:-44123993 None:intergenic
AGGTTGGTTCTGTTTAACTA+AGG 0.484677 8_2:+44123936 Msa1249460:three_prime_UTR
TTCGTCTCCTTCCATTTCCT+AGG 0.486230 8_2:-44121325 None:intergenic
TGGTTGAAATTTGAGAGTTA+CGG 0.487657 8_2:+44124142 Msa1249460:three_prime_UTR
CAAATTATGGTTATGATCGC+AGG 0.492260 8_2:+44121381 Msa1249460:CDS
GTGATTCACCTTATGCCAAC+GGG 0.499803 8_2:+44122678 Msa1249460:CDS
GAAGCTTGTGAAGGCCAGTA+AGG 0.500025 8_2:-44124012 None:intergenic
CACTCCCGAGCAAAGTGTCC+AGG 0.501069 8_2:-44121278 None:intergenic
TGACCGACATCTTGGATTTG+TGG 0.501713 8_2:+44123595 Msa1249460:three_prime_UTR
TTGACTAAAACTGCAACATC+GGG 0.504040 8_2:+44123295 Msa1249460:CDS
GTGAATCACGGCGAGAATAA+CGG 0.506800 8_2:-44122664 None:intergenic
ATCAATTTAACCACACAGAA+TGG 0.511222 8_2:-44123484 None:intergenic
AACTCGATAAATGCATATCC+TGG 0.517321 8_2:-44120955 None:intergenic
GACTGCAATGATCGGCATCT+TGG 0.518629 8_2:+44123897 Msa1249460:three_prime_UTR
GCAACAAGATGAGAGGTTTG+TGG 0.522126 8_2:-44123259 None:intergenic
CCAATTCATGAATTGCATCA+AGG 0.522137 8_2:-44120996 None:intergenic
CAATTCATGAATTGCATCAA+GGG 0.523222 8_2:-44120995 None:intergenic
ATCTATTTAACCACACAGAA+TGG 0.526889 8_2:-44123793 None:intergenic
GGTGTTATGCTACGTCGTCT+TGG 0.528879 8_2:-44122599 None:intergenic
CTCGTGAACCACCGCGTGAA+CGG 0.534891 8_2:-44121301 None:intergenic
CATAATTCTAAGAGTGGAGG+AGG 0.536345 8_2:+44121188 Msa1249460:CDS
TGGGTTGCTCGCAGACCACC+AGG 0.541875 8_2:+44120937 Msa1249460:CDS
AGCTATCACCTTTAGCTACA+GGG 0.549389 8_2:+44124051 Msa1249460:three_prime_UTR
ACATTGGTCCCTGTAGCTAA+AGG 0.550671 8_2:-44124059 None:intergenic
ATGAGAGGTTTGTGGAGGCA+TGG 0.550964 8_2:-44123251 None:intergenic
TTGGTTGTGTGGGATCAGTA+AGG 0.552779 8_2:+44123916 Msa1249460:three_prime_UTR
GAATGGTGAAGTTATTCACT+TGG 0.552858 8_2:-44123776 None:intergenic
GAGCGGCGATGCAAGACGCT+AGG 0.552927 8_2:-44123967 None:intergenic
TGGAGAATAAAGACGAAACA+AGG 0.553945 8_2:-44123860 None:intergenic
TCGTCTGTTATTACACTGGA+TGG 0.557498 8_2:+44124122 Msa1249460:three_prime_UTR
AGAATAACGGTATGGAGGAG+GGG 0.558348 8_2:-44122651 None:intergenic
GGAGGAGGAGGAGGCCGTGG+TGG 0.559481 8_2:+44121203 Msa1249460:CDS
CGACGCCGATAATAAGGACT+AGG 0.559929 8_2:-44121350 None:intergenic
TGATCGGCATCTTGGTTGTG+TGG 0.565819 8_2:+44123905 Msa1249460:three_prime_UTR
ACTCTTGGGACTGCAATGAT+CGG 0.574033 8_2:+44123889 Msa1249460:three_prime_UTR
TGAACCTGGACACTTTGCTC+GGG 0.574413 8_2:+44121274 Msa1249460:CDS
TTGTGTGGGATCAGTAAGGT+TGG 0.578334 8_2:+44123920 Msa1249460:three_prime_UTR
AAGCAAACGAGAAGCGCAGA+TGG 0.579118 8_2:-44124095 None:intergenic
TGGAAAACAACTAGTGACAT+TGG 0.579798 8_2:-44124075 None:intergenic
AATATCGTCTGTTATTACAC+TGG 0.579927 8_2:+44124118 Msa1249460:three_prime_UTR
GCTCCCTCTCAGTGACTCGA+GGG 0.584016 8_2:-44120088 None:intergenic
CTGCTTCTTGCCATTCTGTG+TGG 0.585160 8_2:+44123474 Msa1249460:three_prime_UTR
CTTTCTCATAATTCTAAGAG+TGG 0.585332 8_2:+44121182 Msa1249460:CDS
TTATCGAGTTTGATGATCGG+AGG 0.585575 8_2:+44120968 Msa1249460:CDS
GATGCAATTCATGAATTGGA+TGG 0.586849 8_2:+44121000 Msa1249460:CDS
GGCCGTGGTGGTGGGCGCGG+CGG 0.594471 8_2:+44121215 Msa1249460:CDS
CATTTATCGAGTTTGATGAT+CGG 0.597144 8_2:+44120965 Msa1249460:CDS
AGCAGACAAGATGTACTAAG+TGG 0.598603 8_2:-44123220 None:intergenic
AACTTCACCAATTCAAAAGG+AGG 0.599022 8_2:-44123683 None:intergenic
TGGAGACTACAGACGTAACA+AGG 0.600204 8_2:-44123550 None:intergenic
TCACGGCGAGAATAACGGTA+TGG 0.602797 8_2:-44122659 None:intergenic
ATTCCACAAATCCAAGATGT+CGG 0.607455 8_2:-44123598 None:intergenic
CGTGATTCACCTTATGCCAA+CGG 0.607663 8_2:+44122677 Msa1249460:CDS
CGTTCACGCGGTGGTTCACG+AGG 0.608918 8_2:+44121302 Msa1249460:CDS
TGTTACGTCTGTAGTCTCCA+TGG 0.613179 8_2:+44123553 Msa1249460:three_prime_UTR
TCTCATAATTCTAAGAGTGG+AGG 0.615126 8_2:+44121185 Msa1249460:CDS
GAATTGGTGAAGTTGAATGG+TGG 0.618769 8_2:+44123692 Msa1249460:three_prime_UTR
GATCGGCATCTTGGTTGTGT+GGG 0.618833 8_2:+44123906 Msa1249460:three_prime_UTR
GCTCGGGAGTGCCGTTCACG+CGG 0.623311 8_2:+44121290 Msa1249460:CDS
TGTGTGGTTAAATAGATGGT+TGG 0.624333 8_2:+44123799 Msa1249460:three_prime_UTR
CACGAGGCCTAGGAAATGGA+AGG 0.626617 8_2:+44121318 Msa1249460:CDS
AGTCCTTATTATCGGCGTCG+TGG 0.628842 8_2:+44121353 Msa1249460:CDS
TATCGAGTTTGATGATCGGA+GGG 0.636971 8_2:+44120969 Msa1249460:CDS
TGCAGAAGCAACAAGATGAG+AGG 0.637667 8_2:-44123266 None:intergenic
AACTTGTCCAATTCAAAACG+AGG 0.640376 8_2:-44123358 None:intergenic
CGGCGAGAATAACGGTATGG+AGG 0.643032 8_2:-44122656 None:intergenic
GCAGTCCCAAGAGTTTAGCA+TGG 0.644552 8_2:-44123880 None:intergenic
TTGGAGATCTTCTCCCACGC+GGG 0.646297 8_2:-44122580 None:intergenic
CGTTGGCATAAGGTGAATCA+CGG 0.649133 8_2:-44122676 None:intergenic
TCAGGAGTTATAGCCCGCGT+GGG 0.651961 8_2:+44122567 Msa1249460:intron
ATCAGGAGTTATAGCCCGCG+TGG 0.663488 8_2:+44122566 Msa1249460:intron
GGACCCTCGAGTCACTGAGA+GGG 0.663626 8_2:+44120085 Msa1249460:CDS
ACAAGATGAGAGGTTTGTGG+AGG 0.675462 8_2:-44123256 None:intergenic
TCTACTGTAGAAGCTTGTGA+AGG 0.681962 8_2:-44124021 None:intergenic
TCGATAAATGCATATCCTGG+TGG 0.682066 8_2:-44120952 None:intergenic
GCAGTCCCAATAGCGTACCA+TGG 0.684791 8_2:-44123570 None:intergenic
GACCTCAAATGCTATGAATG+TGG 0.686030 8_2:+44121251 Msa1249460:CDS
CTTGGAGATCTTCTCCCACG+CGG 0.688043 8_2:-44122581 None:intergenic
AGCATAACACCTCCTCGTGG+TGG 0.688379 8_2:+44122611 Msa1249460:CDS
TGGACCCTCGAGTCACTGAG+AGG 0.689956 8_2:+44120084 Msa1249460:CDS
AATAACTTCACCATTCTGTG+TGG 0.695332 8_2:+44123783 Msa1249460:three_prime_UTR
AAAAGCAGAGAAATTTAGCG+TGG 0.698307 8_2:-44124223 None:intergenic
GGAGAATAAAGACGAAACAA+GGG 0.706392 8_2:-44123859 None:intergenic
TAGCTATGACCACCACGAGG+AGG 0.726139 8_2:-44122620 None:intergenic
CTGTAGCTATGACCACCACG+AGG 0.750354 8_2:-44122623 None:intergenic
GAAACTAGTTAAGGTCAGAG+CGG 0.751423 8_2:-44123984 None:intergenic
CGTAGCATAACACCTCCTCG+TGG 0.752153 8_2:+44122608 Msa1249460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAAATTATGTGAAA+TGG - chr8_2:44122239-44122258 None:intergenic 10.0%
!! TTTATGTTACATTAAAATTG+TGG + chr8_2:44120230-44120249 Msa1249460:intron 15.0%
!!! TATTTTTTAAAAAAAATGCG+AGG + chr8_2:44120536-44120555 Msa1249460:intron 15.0%
!! AATATATACAAATTATTTGG+AGG + chr8_2:44120691-44120710 Msa1249460:intron 15.0%
!! TAAATATTAATGCAAATTAG+AGG + chr8_2:44120729-44120748 Msa1249460:intron 15.0%
!! TGAATATATCAATAAAAGAA+TGG - chr8_2:44122511-44122530 None:intergenic 15.0%
!! ACCATAATATATATAAAGTA+GGG - chr8_2:44123071-44123090 None:intergenic 15.0%
!! TTGATATATTGTCATTAATA+AGG + chr8_2:44123133-44123152 Msa1249460:intron 15.0%
!!! CATTTTCTTCTCAAATTTTT+CGG + chr8_2:44119971-44119990 Msa1249460:intron 20.0%
!!! GTTTTCACAAAATTTTGTAT+AGG + chr8_2:44120026-44120045 Msa1249460:intron 20.0%
!!! ACAAAATTTTGTATAGGTTT+TGG + chr8_2:44120032-44120051 Msa1249460:intron 20.0%
!!! GATAGAAATATTTTCTGTTT+AGG + chr8_2:44120196-44120215 Msa1249460:intron 20.0%
!! AATTGAAGTAAATTCAAACA+AGG + chr8_2:44120407-44120426 Msa1249460:intron 20.0%
!! ATTCAAACAAGGTATAATAA+CGG + chr8_2:44120418-44120437 Msa1249460:intron 20.0%
!! GTGATTAACAATATTGATAT+AGG + chr8_2:44120795-44120814 Msa1249460:intron 20.0%
!!! TTCATAATTTGTTCCATTAT+TGG + chr8_2:44120869-44120888 Msa1249460:intron 20.0%
!!! TTAAGATTTTGAACCAATAA+TGG - chr8_2:44120885-44120904 None:intergenic 20.0%
!! ATACCAATGTTATATAACAT+TGG + chr8_2:44121996-44122015 Msa1249460:intron 20.0%
!! ATACCAATGTTATATAACAT+TGG - chr8_2:44121996-44122015 None:intergenic 20.0%
!!! ATCTTTTCATGTTTTCATTT+GGG + chr8_2:44122530-44122549 Msa1249460:intron 20.0%
!!! AAAGGGAAGATTTAAAATAT+GGG - chr8_2:44122784-44122803 None:intergenic 20.0%
!!! AAAAGGGAAGATTTAAAATA+TGG - chr8_2:44122785-44122804 None:intergenic 20.0%
!! TCCCTACTTTATATATATTA+TGG + chr8_2:44123067-44123086 Msa1249460:intron 20.0%
!! CACCATAATATATATAAAGT+AGG - chr8_2:44123072-44123091 None:intergenic 20.0%
! CGAAAAATTTGAGAAGAAAA+TGG - chr8_2:44119973-44119992 None:intergenic 25.0%
!!! TAAGATTTTTTCGTGGATAA+TGG + chr8_2:44120450-44120469 Msa1249460:intron 25.0%
! ACCATTAATTACGTTCTAAT+AGG + chr8_2:44120639-44120658 Msa1249460:intron 25.0%
! TCCTATTAGAACGTAATTAA+TGG - chr8_2:44120643-44120662 None:intergenic 25.0%
! TTATGCATCATATTGAGATT+TGG + chr8_2:44121107-44121126 Msa1249460:intron 25.0%
! TATGCATCATATTGAGATTT+GGG + chr8_2:44121108-44121127 Msa1249460:intron 25.0%
! ATAATGTATGAATGTCGTAT+AGG + chr8_2:44121137-44121156 Msa1249460:intron 25.0%
! CCAAACTGTAACAAAATAAA+AGG - chr8_2:44121486-44121505 None:intergenic 25.0%
!!! CCTTTTATTTTGTTACAGTT+TGG + chr8_2:44121483-44121502 Msa1249460:intron 25.0%
!! TATTTTGTTACAGTTTGGAT+TGG + chr8_2:44121488-44121507 Msa1249460:intron 25.0%
! ATATTTGCATTCCTAAACAA+TGG - chr8_2:44121517-44121536 None:intergenic 25.0%
!!! TTATTTTACCAACTTCAAGA+AGG - chr8_2:44121626-44121645 None:intergenic 25.0%
!!! GAAGTTGGTAAAATAATCAA+TGG + chr8_2:44121630-44121649 Msa1249460:intron 25.0%
! ATTGAATTTCATTCGAATAG+AGG - chr8_2:44121700-44121719 None:intergenic 25.0%
! ATTGTTCTGCAAATTATGTT+GGG + chr8_2:44121745-44121764 Msa1249460:intron 25.0%
!!! AATGAGAAGTGTTATAAGTT+GGG - chr8_2:44121933-44121952 None:intergenic 25.0%
!!! AAATGAGAAGTGTTATAAGT+TGG - chr8_2:44121934-44121953 None:intergenic 25.0%
!! ATTTTATGTACTTCATAGCT+TGG + chr8_2:44121950-44121969 Msa1249460:intron 25.0%
!! TTTTATGTACTTCATAGCTT+GGG + chr8_2:44121951-44121970 Msa1249460:intron 25.0%
! CCAAATTAACAAGGAATAAA+AGG - chr8_2:44122163-44122182 None:intergenic 25.0%
!! CCTTTTATTCCTTGTTAATT+TGG + chr8_2:44122160-44122179 Msa1249460:intron 25.0%
! ACAAATCTACCAAATTAACA+AGG - chr8_2:44122172-44122191 None:intergenic 25.0%
!! CATCTTTTCATGTTTTCATT+TGG + chr8_2:44122529-44122548 Msa1249460:intron 25.0%
!! ATGTGATTTGAGTTAATGAA+TGG + chr8_2:44122736-44122755 Msa1249460:intron 25.0%
!! AATCTCTGGAAAAAAGAAAA+GGG - chr8_2:44122801-44122820 None:intergenic 25.0%
!! TAATCTCTGGAAAAAAGAAA+AGG - chr8_2:44122802-44122821 None:intergenic 25.0%
! AAAATGACGAATAATTGTTG+TGG + chr8_2:44122842-44122861 Msa1249460:intron 25.0%
! ATTATGTTATGTCATGACAA+TGG + chr8_2:44122925-44122944 Msa1249460:intron 25.0%
! TATATCAAAAATCACCATAG+TGG - chr8_2:44123121-44123140 None:intergenic 25.0%
!!! ATTTTGATTCGATTTCATGA+AGG - chr8_2:44123420-44123439 None:intergenic 25.0%
! TCATGAAATCGAATCAAAAT+TGG + chr8_2:44123420-44123439 Msa1249460:three_prime_UTR 25.0%
TGAACAATTCTTTCACTATC+AGG + chr8_2:44119914-44119933 Msa1249460:five_prime_UTR 30.0%
!!! TTGTATAGGTTTTGGAAGAA+TGG + chr8_2:44120040-44120059 Msa1249460:intron 30.0%
TAGGGTTTATATTGGGAATT+TGG + chr8_2:44120064-44120083 Msa1249460:CDS 30.0%
AACAAGGTATAATAACGGTT+CGG + chr8_2:44120423-44120442 Msa1249460:intron 30.0%
AAAATATCTACTGTTGAAGC+AGG - chr8_2:44120491-44120510 None:intergenic 30.0%
!!! GAATCTGCCATTTTCATTTT+GGG - chr8_2:44120572-44120591 None:intergenic 30.0%
ATTTGGAGGTCTAGATTTAT+AGG + chr8_2:44120705-44120724 Msa1249460:intron 30.0%
CCATAAAGCAACTAAAACAA+TGG - chr8_2:44120762-44120781 None:intergenic 30.0%
!!! CCATTGTTTTAGTTGCTTTA+TGG + chr8_2:44120759-44120778 Msa1249460:intron 30.0%
!!! GTTTTAGTTGCTTTATGGTA+AGG + chr8_2:44120764-44120783 Msa1249460:intron 30.0%
AATATTGTTAATCACAACGC+CGG - chr8_2:44120790-44120809 None:intergenic 30.0%
!!! TTTTTTGCAATACAGTGTCT+GGG + chr8_2:44120918-44120937 Msa1249460:intron 30.0%
! CATTTATCGAGTTTGATGAT+CGG + chr8_2:44120965-44120984 Msa1249460:CDS 30.0%
CAATTCATGAATTGCATCAA+GGG - chr8_2:44120998-44121017 None:intergenic 30.0%
AAATTGACAAAGCATGAACT+AGG - chr8_2:44121034-44121053 None:intergenic 30.0%
ATGCATCATATTGAGATTTG+GGG + chr8_2:44121109-44121128 Msa1249460:intron 30.0%
GAATGTCGTATAGGAAAAAA+TGG + chr8_2:44121146-44121165 Msa1249460:intron 30.0%
! CTTTCTCATAATTCTAAGAG+TGG + chr8_2:44121182-44121201 Msa1249460:CDS 30.0%
GAAATTCAATATCTTTGCTG+AGG + chr8_2:44121710-44121729 Msa1249460:intron 30.0%
GATTGTTCTGCAAATTATGT+TGG + chr8_2:44121744-44121763 Msa1249460:intron 30.0%
TTGTTCTGCAAATTATGTTG+GGG + chr8_2:44121746-44121765 Msa1249460:intron 30.0%
!! TTTTTAGCGTTGTCAAATGT+TGG + chr8_2:44121790-44121809 Msa1249460:intron 30.0%
!! ATGAGAAGTGTTATAAGTTG+GGG - chr8_2:44121932-44121951 None:intergenic 30.0%
TTTATGTACTTCATAGCTTG+GGG + chr8_2:44121952-44121971 Msa1249460:intron 30.0%
ATATAACATTGGTATCCCAA+TGG - chr8_2:44122117-44122136 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG - chr8_2:44122106-44122125 None:intergenic 30.0%
TATATAACATTGGCCAATGA+AGG + chr8_2:44122006-44122025 Msa1249460:intron 30.0%
TATATAACATTGGCCAATGA+AGG - chr8_2:44122006-44122025 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG + chr8_2:44122106-44122125 Msa1249460:intron 30.0%
ATATAACATTGGTATCCCAA+TGG + chr8_2:44122117-44122136 Msa1249460:intron 30.0%
AATTGAAATTTCTCTCTGCT+TGG + chr8_2:44122256-44122275 Msa1249460:intron 30.0%
ATTGAAATTTCTCTCTGCTT+GGG + chr8_2:44122257-44122276 Msa1249460:intron 30.0%
GATTTATGAATATCCTTTCC+AGG - chr8_2:44122334-44122353 None:intergenic 30.0%
GAAATTATACAGTGGAAATG+AGG - chr8_2:44122443-44122462 None:intergenic 30.0%
TGCACTTAGAAATTATACAG+TGG - chr8_2:44122451-44122470 None:intergenic 30.0%
TTATGTCATGACAATGGAAT+GGG + chr8_2:44122931-44122950 Msa1249460:intron 30.0%
AATGGGTATTACTATGAACT+TGG + chr8_2:44122948-44122967 Msa1249460:intron 30.0%
ATATATAAAGTAGGGAAGAC+TGG - chr8_2:44123063-44123082 None:intergenic 30.0%
! CAGAGAAACATCAACATTTT+AGG - chr8_2:44123161-44123180 None:intergenic 30.0%
GAATTGGACAAGTTTAAAGA+TGG + chr8_2:44123367-44123386 Msa1249460:three_prime_UTR 30.0%
ATCAATTTAACCACACAGAA+TGG - chr8_2:44123487-44123506 None:intergenic 30.0%
TTGGATTTGTGGAATCAAAA+AGG + chr8_2:44123606-44123625 Msa1249460:three_prime_UTR 30.0%
TTCAACTTCACCAATTCAAA+AGG - chr8_2:44123689-44123708 None:intergenic 30.0%
TTTGAATTGGTGAAGTTGAA+TGG + chr8_2:44123689-44123708 Msa1249460:three_prime_UTR 30.0%
ATCTATTTAACCACACAGAA+TGG - chr8_2:44123796-44123815 None:intergenic 30.0%
ATTCTGTGTGGTTAAATAGA+TGG + chr8_2:44123795-44123814 Msa1249460:three_prime_UTR 30.0%
AATATCGTCTGTTATTACAC+TGG + chr8_2:44124118-44124137 Msa1249460:three_prime_UTR 30.0%
TGGTTGAAATTTGAGAGTTA+CGG + chr8_2:44124142-44124161 Msa1249460:three_prime_UTR 30.0%
! TTTTTCTCTTGACAGTTTAG+TGG + chr8_2:44124252-44124271 Msa1249460:three_prime_UTR 30.0%
!!! GGTTTTTTTTTCGCGATGAT+TGG + chr8_2:44119992-44120011 Msa1249460:intron 35.0%
AGAATGGCTAGGGTTTATAT+TGG + chr8_2:44120056-44120075 Msa1249460:exon 35.0%
GAATGGCTAGGGTTTATATT+GGG + chr8_2:44120057-44120076 Msa1249460:exon 35.0%
GAAGATGAATTTCGTGTGTA+TGG + chr8_2:44120113-44120132 Msa1249460:CDS 35.0%
GGAACTGATACGATCTTTAT+AGG + chr8_2:44120359-44120378 Msa1249460:intron 35.0%
GTGAACTCCCAAAATGAAAA+TGG + chr8_2:44120562-44120581 Msa1249460:intron 35.0%
!!! CGAATCTGCCATTTTCATTT+TGG - chr8_2:44120573-44120592 None:intergenic 35.0%
GCAACTAAAACAATGGCTTT+AGG - chr8_2:44120755-44120774 None:intergenic 35.0%
!!! GTTTTTTGCAATACAGTGTC+TGG + chr8_2:44120917-44120936 Msa1249460:intron 35.0%
AACTCGATAAATGCATATCC+TGG - chr8_2:44120958-44120977 None:intergenic 35.0%
CCAATTCATGAATTGCATCA+AGG - chr8_2:44120999-44121018 None:intergenic 35.0%
CCTTGATGCAATTCATGAAT+TGG + chr8_2:44120996-44121015 Msa1249460:CDS 35.0%
GATGCAATTCATGAATTGGA+TGG + chr8_2:44121000-44121019 Msa1249460:CDS 35.0%
! TCTCATAATTCTAAGAGTGG+AGG + chr8_2:44121185-44121204 Msa1249460:CDS 35.0%
GAAGTCCTAGTCCTTATTAT+CGG + chr8_2:44121345-44121364 Msa1249460:CDS 35.0%
CTGCGATCATAACCATAATT+TGG - chr8_2:44121383-44121402 None:intergenic 35.0%
CAAATTATGGTTATGATCGC+AGG + chr8_2:44121381-44121400 Msa1249460:CDS 35.0%
ACCAACTTCAAGAAGGTTAT+GGG - chr8_2:44121619-44121638 None:intergenic 35.0%
TACCAACTTCAAGAAGGTTA+TGG - chr8_2:44121620-44121639 None:intergenic 35.0%
!!! GTATTTTTTTGACAAACGCC+CGG + chr8_2:44121833-44121852 Msa1249460:intron 35.0%
!!! TATTTTTTTGACAAACGCCC+GGG + chr8_2:44121834-44121853 Msa1249460:intron 35.0%
! TATGCATGTGAAGTGTTATG+TGG - chr8_2:44122036-44122055 None:intergenic 35.0%
AAGGAATAAAAGGCAAGCTA+TGG - chr8_2:44122153-44122172 None:intergenic 35.0%
AATTCAACTTAACCACTGAG+TGG + chr8_2:44122367-44122386 Msa1249460:intron 35.0%
! TGGGTTCACTTCATTTTATC+AGG + chr8_2:44122549-44122568 Msa1249460:intron 35.0%
CACAATCAGATCTTAATCTC+TGG - chr8_2:44122815-44122834 None:intergenic 35.0%
AAACTAGACTATAGCAGAGA+GGG - chr8_2:44122870-44122889 None:intergenic 35.0%
! TGCTATAGTCTAGTTTCTCT+AGG + chr8_2:44122874-44122893 Msa1249460:intron 35.0%
!! TAGTCTAGTTTCTCTAGGAT+TGG + chr8_2:44122879-44122898 Msa1249460:intron 35.0%
!! AGTCTAGTTTCTCTAGGATT+GGG + chr8_2:44122880-44122899 Msa1249460:intron 35.0%
GTTATGTCATGACAATGGAA+TGG + chr8_2:44122930-44122949 Msa1249460:intron 35.0%
!! TTAGTCTTGCTAATCCACTA+TGG + chr8_2:44123104-44123123 Msa1249460:intron 35.0%
!!! TGTTTCTCTGTTTTGAAGTG+TGG + chr8_2:44123171-44123190 Msa1249460:intron 35.0%
!!! GTTTCTCTGTTTTGAAGTGT+GGG + chr8_2:44123172-44123191 Msa1249460:intron 35.0%
GTTGACTAAAACTGCAACAT+CGG + chr8_2:44123294-44123313 Msa1249460:CDS 35.0%
TTGACTAAAACTGCAACATC+GGG + chr8_2:44123295-44123314 Msa1249460:CDS 35.0%
CATCGAGAGTCAACAAAAAA+AGG - chr8_2:44123322-44123341 None:intergenic 35.0%
!! GTTTCATCCTCGTTTTGAAT+TGG + chr8_2:44123351-44123370 Msa1249460:three_prime_UTR 35.0%
AACTTGTCCAATTCAAAACG+AGG - chr8_2:44123361-44123380 None:intergenic 35.0%
! GTGGTTAAATTGATGATTGC+TGG + chr8_2:44123493-44123512 Msa1249460:three_prime_UTR 35.0%
GCAATCAACATGCAAACATT+TGG - chr8_2:44123521-44123540 None:intergenic 35.0%
ATTCCACAAATCCAAGATGT+CGG - chr8_2:44123601-44123620 None:intergenic 35.0%
AACTTCACCAATTCAAAAGG+AGG - chr8_2:44123686-44123705 None:intergenic 35.0%
GAATGGTGAAGTTATTCACT+TGG - chr8_2:44123779-44123798 None:intergenic 35.0%
AATAACTTCACCATTCTGTG+TGG + chr8_2:44123783-44123802 Msa1249460:three_prime_UTR 35.0%
TGTGTGGTTAAATAGATGGT+TGG + chr8_2:44123799-44123818 Msa1249460:three_prime_UTR 35.0%
GGAGAATAAAGACGAAACAA+GGG - chr8_2:44123862-44123881 None:intergenic 35.0%
TGGAGAATAAAGACGAAACA+AGG - chr8_2:44123863-44123882 None:intergenic 35.0%
TATTCTCCATGCTAAACTCT+TGG + chr8_2:44123874-44123893 Msa1249460:three_prime_UTR 35.0%
ATTCTCCATGCTAAACTCTT+GGG + chr8_2:44123875-44123894 Msa1249460:three_prime_UTR 35.0%
!! AGGTTGGTTCTGTTTAACTA+AGG + chr8_2:44123936-44123955 Msa1249460:three_prime_UTR 35.0%
AAGGAAGCTGAAACTAGTTA+AGG - chr8_2:44123996-44124015 None:intergenic 35.0%
TGGAAAACAACTAGTGACAT+TGG - chr8_2:44124078-44124097 None:intergenic 35.0%
AAAAGCAGAGAAATTTAGCG+TGG - chr8_2:44124226-44124245 None:intergenic 35.0%
! TCTTGACAGTTTAGTGGTTT+TGG + chr8_2:44124258-44124277 Msa1249460:three_prime_UTR 35.0%
!!! TAGGTTTTGGAAGAATGGCT+AGG + chr8_2:44120045-44120064 Msa1249460:intron 40.0%
!!! AGGTTTTGGAAGAATGGCTA+GGG + chr8_2:44120046-44120065 Msa1249460:intron 40.0%
TCAGCACTCTCTTTCAACAA+AGG + chr8_2:44120158-44120177 Msa1249460:intron 40.0%
TATTGTCTGCATGAACAACG+AGG + chr8_2:44120337-44120356 Msa1249460:intron 40.0%
ATTGTCTGCATGAACAACGA+GGG + chr8_2:44120338-44120357 Msa1249460:intron 40.0%
! AAGGTATAATAACGGTTCGG+TGG + chr8_2:44120426-44120445 Msa1249460:intron 40.0%
!!! CGGTGGTTAAGATTTTTTCG+TGG + chr8_2:44120443-44120462 Msa1249460:intron 40.0%
! TTTCGTGGATAATGGTACCA+CGG + chr8_2:44120458-44120477 Msa1249460:intron 40.0%
! GCGGTAAAGTACTCTTTCTT+CGG - chr8_2:44120613-44120632 None:intergenic 40.0%
! TAGTTGCTTTATGGTAAGGC+CGG + chr8_2:44120768-44120787 Msa1249460:intron 40.0%
TCGATAAATGCATATCCTGG+TGG - chr8_2:44120955-44120974 None:intergenic 40.0%
! TTATCGAGTTTGATGATCGG+AGG + chr8_2:44120968-44120987 Msa1249460:CDS 40.0%
! TATCGAGTTTGATGATCGGA+GGG + chr8_2:44120969-44120988 Msa1249460:CDS 40.0%
CATTGCTGAGTGTATGTTGT+TGG + chr8_2:44121059-44121078 Msa1249460:intron 40.0%
GTCGTATAGGAAAAAATGGC+TGG + chr8_2:44121150-44121169 Msa1249460:intron 40.0%
! CATAATTCTAAGAGTGGAGG+AGG + chr8_2:44121188-44121207 Msa1249460:CDS 40.0%
GACCTCAAATGCTATGAATG+TGG + chr8_2:44121251-44121270 Msa1249460:CDS 40.0%
CACCACATTCATAGCATTTG+AGG - chr8_2:44121256-44121275 None:intergenic 40.0%
! TGTACTTTCACGCACTGATA+TGG + chr8_2:44121560-44121579 Msa1249460:intron 40.0%
! GTACTTTCACGCACTGATAT+GGG + chr8_2:44121561-44121580 Msa1249460:intron 40.0%
ACCCATAACCTTCTTGAAGT+TGG + chr8_2:44121615-44121634 Msa1249460:intron 40.0%
!!! TGTTGGGGACATCACTTTTT+CGG + chr8_2:44121761-44121780 Msa1249460:intron 40.0%
AAAAATACACTCCCGCAATC+CGG - chr8_2:44121821-44121840 None:intergenic 40.0%
!!! ATTTTTTTGACAAACGCCCG+GGG + chr8_2:44121835-44121854 Msa1249460:intron 40.0%
!! TGAAGGATGATGGCGTTTTA+TGG + chr8_2:44121865-44121884 Msa1249460:intron 40.0%
ATGTCGGAAAGCTAGAAATC+TGG - chr8_2:44121899-44121918 None:intergenic 40.0%
! GAAGTGTTATAAGTTGGGGA+TGG - chr8_2:44121928-44121947 None:intergenic 40.0%
TATGGCACTTGTGTACCATT+GGG - chr8_2:44122135-44122154 None:intergenic 40.0%
ACATAATCAATCGTACCCGT+TGG - chr8_2:44122696-44122715 None:intergenic 40.0%
GAAACTAGACTATAGCAGAG+AGG - chr8_2:44122871-44122890 None:intergenic 40.0%
! TAAGTGTTGTAGCCGCAAAA+GGG + chr8_2:44122976-44122995 Msa1249460:intron 40.0%
CTTCAGCTTACAATACCTGA+AGG + chr8_2:44123032-44123051 Msa1249460:intron 40.0%
!!! CTGTTTTGAAGTGTGGGTAT+TGG + chr8_2:44123178-44123197 Msa1249460:intron 40.0%
!! GTGGTGAAACAATGCTGTTT+TGG - chr8_2:44123204-44123223 None:intergenic 40.0%
AGCAGACAAGATGTACTAAG+TGG - chr8_2:44123223-44123242 None:intergenic 40.0%
! TGCTCATCCTCCTTTTGAAT+TGG + chr8_2:44123676-44123695 Msa1249460:three_prime_UTR 40.0%
GAATTGGTGAAGTTGAATGG+TGG + chr8_2:44123692-44123711 Msa1249460:three_prime_UTR 40.0%
GAAACTAGTTAAGGTCAGAG+CGG - chr8_2:44123987-44124006 None:intergenic 40.0%
! ACTAGTTTCAGCTTCCTTAC+TGG + chr8_2:44123998-44124017 Msa1249460:three_prime_UTR 40.0%
TCTACTGTAGAAGCTTGTGA+AGG - chr8_2:44124024-44124043 None:intergenic 40.0%
TAGCTATCACCTTTAGCTAC+AGG + chr8_2:44124050-44124069 Msa1249460:three_prime_UTR 40.0%
AGCTATCACCTTTAGCTACA+GGG + chr8_2:44124051-44124070 Msa1249460:three_prime_UTR 40.0%
TCGTCTGTTATTACACTGGA+TGG + chr8_2:44124122-44124141 Msa1249460:three_prime_UTR 40.0%
! TTCGTGGATAATGGTACCAC+GGG + chr8_2:44120459-44120478 Msa1249460:intron 45.0%
CGTAATTAATGGTGCAGCAG+CGG - chr8_2:44120632-44120651 None:intergenic 45.0%
! AATTCTAAGAGTGGAGGAGG+AGG + chr8_2:44121191-44121210 Msa1249460:CDS 45.0%
TGCTATGAATGTGGTGAACC+TGG + chr8_2:44121260-44121279 Msa1249460:CDS 45.0%
TTCGTCTCCTTCCATTTCCT+AGG - chr8_2:44121328-44121347 None:intergenic 45.0%
CGTCGTGGAAGTCCAAATTA+TGG + chr8_2:44121368-44121387 Msa1249460:CDS 45.0%
! TGGATTGGACGCCATTGTTT+AGG + chr8_2:44121503-44121522 Msa1249460:intron 45.0%
TTGTCAAATGTTGGCCATGC+CGG + chr8_2:44121799-44121818 Msa1249460:intron 45.0%
TCATCCTTCACAATCTTCCC+CGG - chr8_2:44121855-44121874 None:intergenic 45.0%
GGGAAGATTGTGAAGGATGA+TGG + chr8_2:44121855-44121874 Msa1249460:intron 45.0%
!! AGGATGATGGCGTTTTATGG+CGG + chr8_2:44121868-44121887 Msa1249460:intron 45.0%
TTGGGGATGGATGATCATGT+CGG - chr8_2:44121915-44121934 None:intergenic 45.0%
GTATCCCAATGGTACACAAG+TGG - chr8_2:44122128-44122147 None:intergenic 45.0%
GTTATGTGGCACACCTTCAT+TGG - chr8_2:44122022-44122041 None:intergenic 45.0%
CTTCTATAGACCTTCCTGTG+TGG + chr8_2:44122072-44122091 Msa1249460:intron 45.0%
CTATGGCACTTGTGTACCAT+TGG - chr8_2:44122136-44122155 None:intergenic 45.0%
ATATCCTTTCCAGGCTGAGT+GGG - chr8_2:44122325-44122344 None:intergenic 45.0%
AATATCCTTTCCAGGCTGAG+TGG - chr8_2:44122326-44122345 None:intergenic 45.0%
AGAATAACGGTATGGAGGAG+GGG - chr8_2:44122654-44122673 None:intergenic 45.0%
GAGAATAACGGTATGGAGGA+GGG - chr8_2:44122655-44122674 None:intergenic 45.0%
GTGAATCACGGCGAGAATAA+CGG - chr8_2:44122667-44122686 None:intergenic 45.0%
CGTTGGCATAAGGTGAATCA+CGG - chr8_2:44122679-44122698 None:intergenic 45.0%
CGTGATTCACCTTATGCCAA+CGG + chr8_2:44122677-44122696 Msa1249460:CDS 45.0%
GTGATTCACCTTATGCCAAC+GGG + chr8_2:44122678-44122697 Msa1249460:CDS 45.0%
! CTAAGTGTTGTAGCCGCAAA+AGG + chr8_2:44122975-44122994 Msa1249460:intron 45.0%
CTGATGCAAAACAGTGTCCA+AGG - chr8_2:44123004-44123023 None:intergenic 45.0%
ACAAGATGAGAGGTTTGTGG+AGG - chr8_2:44123259-44123278 None:intergenic 45.0%
GCAACAAGATGAGAGGTTTG+TGG - chr8_2:44123262-44123281 None:intergenic 45.0%
TGCAGAAGCAACAAGATGAG+AGG - chr8_2:44123269-44123288 None:intergenic 45.0%
TGGAGACTACAGACGTAACA+AGG - chr8_2:44123553-44123572 None:intergenic 45.0%
TGTTACGTCTGTAGTCTCCA+TGG + chr8_2:44123553-44123572 Msa1249460:three_prime_UTR 45.0%
TAGTCTCCATGGTACGCTAT+TGG + chr8_2:44123564-44123583 Msa1249460:three_prime_UTR 45.0%
AGTCTCCATGGTACGCTATT+GGG + chr8_2:44123565-44123584 Msa1249460:three_prime_UTR 45.0%
TGACCGACATCTTGGATTTG+TGG + chr8_2:44123595-44123614 Msa1249460:three_prime_UTR 45.0%
CTTGGCAAATCTCAGTCAAC+TGG - chr8_2:44123761-44123780 None:intergenic 45.0%
ACTCTTGGGACTGCAATGAT+CGG + chr8_2:44123889-44123908 Msa1249460:three_prime_UTR 45.0%
TTGGTTGTGTGGGATCAGTA+AGG + chr8_2:44123916-44123935 Msa1249460:three_prime_UTR 45.0%
TTGTGTGGGATCAGTAAGGT+TGG + chr8_2:44123920-44123939 Msa1249460:three_prime_UTR 45.0%
ACATTGGTCCCTGTAGCTAA+AGG - chr8_2:44124062-44124081 None:intergenic 45.0%
!! AAAAATATATACAAATTATT+TGG + chr8_2:44120688-44120707 Msa1249460:intron 5.0%
GTGTGTATGGTGTTCTTCGC+AGG + chr8_2:44120126-44120145 Msa1249460:CDS 50.0%
TTGAAGCAGGATCAAACCCG+TGG - chr8_2:44120478-44120497 None:intergenic 50.0%
GATTCGATCCCGTGACCATT+CGG + chr8_2:44120587-44120606 Msa1249460:intron 50.0%
TTTCTTCGGCCGAATGGTCA+CGG - chr8_2:44120599-44120618 None:intergenic 50.0%
GTACTCTTTCTTCGGCCGAA+TGG - chr8_2:44120605-44120624 None:intergenic 50.0%
GTGAACCTGGACACTTTGCT+CGG + chr8_2:44121273-44121292 Msa1249460:CDS 50.0%
TGAACCTGGACACTTTGCTC+GGG + chr8_2:44121274-44121293 Msa1249460:CDS 50.0%
CGACGCCGATAATAAGGACT+AGG - chr8_2:44121353-44121372 None:intergenic 50.0%
AGTCCTTATTATCGGCGTCG+TGG + chr8_2:44121353-44121372 Msa1249460:CDS 50.0%
CTTCCACGACGCCGATAATA+AGG - chr8_2:44121359-44121378 None:intergenic 50.0%
! TCACGCACTGATATGGGAAC+AGG + chr8_2:44121567-44121586 Msa1249460:intron 50.0%
CATCCTTCACAATCTTCCCC+GGG - chr8_2:44121854-44121873 None:intergenic 50.0%
GGCACCACTTGTGTACCATT+GGG + chr8_2:44121973-44121992 Msa1249460:intron 50.0%
CAACTTAACCACTGAGTGGC+TGG + chr8_2:44122371-44122390 Msa1249460:intron 50.0%
! GATCTTTTCCAGCCACTCAG+TGG - chr8_2:44122382-44122401 None:intergenic 50.0%
! GGTGTTATGCTACGTCGTCT+TGG - chr8_2:44122602-44122621 None:intergenic 50.0%
CGAGAATAACGGTATGGAGG+AGG - chr8_2:44122656-44122675 None:intergenic 50.0%
TCACGGCGAGAATAACGGTA+TGG - chr8_2:44122662-44122681 None:intergenic 50.0%
CAATCGTACCCGTTGGCATA+AGG - chr8_2:44122689-44122708 None:intergenic 50.0%
ATGAGAGGTTTGTGGAGGCA+TGG - chr8_2:44123254-44123273 None:intergenic 50.0%
CTGCTTCTTGCCATTCTGTG+TGG + chr8_2:44123474-44123493 Msa1249460:three_prime_UTR 50.0%
GACTGCAATGACCGACATCT+TGG + chr8_2:44123587-44123606 Msa1249460:three_prime_UTR 50.0%
GCAGTCCCAAGAGTTTAGCA+TGG - chr8_2:44123883-44123902 None:intergenic 50.0%
GACTGCAATGATCGGCATCT+TGG + chr8_2:44123897-44123916 Msa1249460:three_prime_UTR 50.0%
TGATCGGCATCTTGGTTGTG+TGG + chr8_2:44123905-44123924 Msa1249460:three_prime_UTR 50.0%
GATCGGCATCTTGGTTGTGT+GGG + chr8_2:44123906-44123925 Msa1249460:three_prime_UTR 50.0%
GAAGCTTGTGAAGGCCAGTA+AGG - chr8_2:44124015-44124034 None:intergenic 50.0%
! AAGCAAACGAGAAGCGCAGA+TGG - chr8_2:44124098-44124117 None:intergenic 50.0%
TTCTTCGGCCGAATGGTCAC+GGG - chr8_2:44120598-44120617 None:intergenic 55.0%
TCTAAGAGTGGAGGAGGAGG+AGG + chr8_2:44121194-44121213 Msa1249460:CDS 55.0%
GGTTCACGAGGCCTAGGAAA+TGG + chr8_2:44121314-44121333 Msa1249460:CDS 55.0%
CACGAGGCCTAGGAAATGGA+AGG + chr8_2:44121318-44121337 Msa1249460:CDS 55.0%
ATGTTGGCCATGCCGGATTG+CGG + chr8_2:44121806-44121825 Msa1249460:intron 55.0%
GGGCACCACTTGTGTACCAT+TGG + chr8_2:44121972-44121991 Msa1249460:intron 55.0%
! TGAAGGTGTGCCACACAGGA+AGG - chr8_2:44122085-44122104 None:intergenic 55.0%
! CCAATGAAGGTGTGCCACAC+AGG - chr8_2:44122089-44122108 None:intergenic 55.0%
CCTGTGTGGCACACCTTCAT+TGG + chr8_2:44122086-44122105 Msa1249460:intron 55.0%
ATCAGGAGTTATAGCCCGCG+TGG + chr8_2:44122566-44122585 Msa1249460:intron 55.0%
TCAGGAGTTATAGCCCGCGT+GGG + chr8_2:44122567-44122586 Msa1249460:intron 55.0%
TTGGAGATCTTCTCCCACGC+GGG - chr8_2:44122583-44122602 None:intergenic 55.0%
CTTGGAGATCTTCTCCCACG+CGG - chr8_2:44122584-44122603 None:intergenic 55.0%
CGTAGCATAACACCTCCTCG+TGG + chr8_2:44122608-44122627 Msa1249460:CDS 55.0%
AGCATAACACCTCCTCGTGG+TGG + chr8_2:44122611-44122630 Msa1249460:CDS 55.0%
TAGCTATGACCACCACGAGG+AGG - chr8_2:44122623-44122642 None:intergenic 55.0%
CTGTAGCTATGACCACCACG+AGG - chr8_2:44122626-44122645 None:intergenic 55.0%
CGGCGAGAATAACGGTATGG+AGG - chr8_2:44122659-44122678 None:intergenic 55.0%
!! GTGTCCAAGGCACCCTTTTG+CGG - chr8_2:44122991-44123010 None:intergenic 55.0%
GCAGTCCCAATAGCGTACCA+TGG - chr8_2:44123573-44123592 None:intergenic 55.0%
TGGACCCTCGAGTCACTGAG+AGG + chr8_2:44120084-44120103 Msa1249460:CDS 60.0%
GGACCCTCGAGTCACTGAGA+GGG + chr8_2:44120085-44120104 Msa1249460:CDS 60.0%
GCTCCCTCTCAGTGACTCGA+GGG - chr8_2:44120091-44120110 None:intergenic 60.0%
AGCTCCCTCTCAGTGACTCG+AGG - chr8_2:44120092-44120111 None:intergenic 60.0%
! CACTCCCGAGCAAAGTGTCC+AGG - chr8_2:44121281-44121300 None:intergenic 60.0%
CTCGTGAACCACCGCGTGAA+CGG - chr8_2:44121304-44121323 None:intergenic 60.0%
TGTTGGCCATGCCGGATTGC+GGG + chr8_2:44121807-44121826 Msa1249460:intron 60.0%
TACACTCCCGCAATCCGGCA+TGG - chr8_2:44121816-44121835 None:intergenic 60.0%
ACGCCCGGGGAAGATTGTGA+AGG + chr8_2:44121848-44121867 Msa1249460:intron 60.0%
TCCTCCCACTCAGCCTGGAA+AGG + chr8_2:44122318-44122337 Msa1249460:intron 60.0%
TCCTTTCCAGGCTGAGTGGG+AGG - chr8_2:44122322-44122341 None:intergenic 60.0%
!! GTAGCCGCAAAAGGGTGCCT+TGG + chr8_2:44122984-44123003 Msa1249460:intron 60.0%
GGAAGACTGGAGCGACCTTC+AGG - chr8_2:44123050-44123069 None:intergenic 60.0%
TGGGTTGCTCGCAGACCACC+AGG + chr8_2:44120937-44120956 Msa1249460:CDS 65.0%
CGTTCACGCGGTGGTTCACG+AGG + chr8_2:44121302-44121321 Msa1249460:CDS 65.0%
TCCAGGCTGAGTGGGAGGAC+AGG - chr8_2:44122317-44122336 None:intergenic 65.0%
GAGCGGCGATGCAAGACGCT+AGG - chr8_2:44123970-44123989 None:intergenic 65.0%
AGTGGAGGAGGAGGAGGCCG+TGG + chr8_2:44121200-44121219 Msa1249460:CDS 70.0%
GAGGAGGAGGCCGTGGTGGT+GGG + chr8_2:44121207-44121226 Msa1249460:CDS 70.0%
!! GCTCGGGAGTGCCGTTCACG+CGG + chr8_2:44121290-44121309 Msa1249460:CDS 70.0%
CGCGGTGGTTCACGAGGCCT+AGG + chr8_2:44121308-44121327 Msa1249460:CDS 70.0%
GCCTGTCCTCCCACTCAGCC+TGG + chr8_2:44122313-44122332 Msa1249460:intron 70.0%
GGAGGAGGAGGAGGCCGTGG+TGG + chr8_2:44121203-44121222 Msa1249460:CDS 75.0%
GGAGGAGGAGGCCGTGGTGG+TGG + chr8_2:44121206-44121225 Msa1249460:CDS 75.0%
!! CGGGAGTGCCGTTCACGCGG+TGG + chr8_2:44121293-44121312 Msa1249460:CDS 75.0%
!!! GGAGGCCGTGGTGGTGGGCG+CGG + chr8_2:44121212-44121231 Msa1249460:CDS 80.0%
! GTCCGCCGCGCCCACCACCA+CGG - chr8_2:44121220-44121239 None:intergenic 80.0%
!!! GGCCGTGGTGGTGGGCGCGG+CGG + chr8_2:44121215-44121234 Msa1249460:CDS 85.0%
!!! GGTGGTGGGCGCGGCGGACG+CGG + chr8_2:44121221-44121240 Msa1249460:CDS 85.0%
! GTGGGCGCGGCGGACGCGGA+GGG + chr8_2:44121225-44121244 Msa1249460:CDS 85.0%
! TGGGCGCGGCGGACGCGGAG+GGG + chr8_2:44121226-44121245 Msa1249460:CDS 85.0%
! GGTGGGCGCGGCGGACGCGG+AGG + chr8_2:44121224-44121243 Msa1249460:CDS 90.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 44119903 44124293 44119903 ID=Msa1249460;Name=Msa1249460
chr8_2 mRNA 44119903 44124293 44119903 ID=Msa1249460-mRNA-1;Parent=Msa1249460;Name=Msa1249460-mRNA-1;_AED=0.09;_eAED=0.09;_QI=44|0.8|1|1|0.8|0.83|6|951|234
chr8_2 exon 44119903 44119935 44119903 ID=Msa1249460-mRNA-1:exon:13409;Parent=Msa1249460-mRNA-1
chr8_2 exon 44120048 44120147 44120048 ID=Msa1249460-mRNA-1:exon:13410;Parent=Msa1249460-mRNA-1
chr8_2 exon 44120933 44121021 44120933 ID=Msa1249460-mRNA-1:exon:13411;Parent=Msa1249460-mRNA-1
chr8_2 exon 44121159 44121402 44121159 ID=Msa1249460-mRNA-1:exon:13412;Parent=Msa1249460-mRNA-1
chr8_2 exon 44122571 44122699 44122571 ID=Msa1249460-mRNA-1:exon:13413;Parent=Msa1249460-mRNA-1
chr8_2 exon 44123189 44124293 44123189 ID=Msa1249460-mRNA-1:exon:13414;Parent=Msa1249460-mRNA-1
chr8_2 five_prime_UTR 44119903 44119935 44119903 ID=Msa1249460-mRNA-1:five_prime_utr;Parent=Msa1249460-mRNA-1
chr8_2 five_prime_UTR 44120048 44120058 44120048 ID=Msa1249460-mRNA-1:five_prime_utr;Parent=Msa1249460-mRNA-1
chr8_2 CDS 44120059 44120147 44120059 ID=Msa1249460-mRNA-1:cds;Parent=Msa1249460-mRNA-1
chr8_2 CDS 44120933 44121021 44120933 ID=Msa1249460-mRNA-1:cds;Parent=Msa1249460-mRNA-1
chr8_2 CDS 44121159 44121402 44121159 ID=Msa1249460-mRNA-1:cds;Parent=Msa1249460-mRNA-1
chr8_2 CDS 44122571 44122699 44122571 ID=Msa1249460-mRNA-1:cds;Parent=Msa1249460-mRNA-1
chr8_2 CDS 44123189 44123342 44123189 ID=Msa1249460-mRNA-1:cds;Parent=Msa1249460-mRNA-1
chr8_2 three_prime_UTR 44123343 44124293 44123343 ID=Msa1249460-mRNA-1:three_prime_utr;Parent=Msa1249460-mRNA-1
Gene Sequence

>Msa1249460

ATGGCTAGGGTTTATATTGGGAATTTGGACCCTCGAGTCACTGAGAGGGAGCTTGAAGATGAATTTCGTGTGTATGGTGTTCTTCGCAGTGTCTGGGTTGCTCGCAGACCACCAGGATATGCATTTATCGAGTTTGATGATCGGAGGGACGCCCTTGATGCAATTCATGAATTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGAGTGGAGGAGGAGGAGGCCGTGGTGGTGGGCGCGGCGGACGCGGAGGGGATGACCTCAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGGGAGTGCCGTTCACGCGGTGGTTCACGAGGCCTAGGAAATGGAAGGAGACGAAGTCCTAGTCCTTATTATCGGCGTCGTGGAAGTCCAAATTATGGTTATGATCGCAGGAGTTATAGCCCGCGTGGGAGAAGATCTCCAAGACGACGTAGCATAACACCTCCTCGTGGTGGTCATAGCTACAGCAGATCCCCTCCTCCATACCGTTATTCTCGCCGTGATTCACCTTATGCCAACGGTGTGGGTATTGGCCAAAACAGCATTGTTTCACCACTTAGTACATCTTGTCTGCTTTTGTGCTCCATGCCTCCACAAACCTCTCATCTTGTTGCTTCTGCATATAAGTTGACTAAAACTGCAACATCGGGACCTTTTTTTGTTGACTCTCGATGA
Protein sequence

>Msa1249460

MARVYIGNLDPRVTERELEDEFRVYGVLRSVWVARRPPGYAFIEFDDRRDALDAIHELDGKNGWRVELSHNSKSGGGGGRGGGRGGRGGDDLKCYECGEPGHFARECRSRGGSRGLGNGRRRSPSPYYRRRGSPNYGYDRRSYSPRGRRSPRRRSITPPRGGHSYSRSPPPYRYSRRDSPYANGVGIGQNSIVSPLSTSCLLLCSMPPQTSHLVASAYKLTKTATSGPFFVDSR*