Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366220 | RHN79978.1 | 62.587 | 433 | 103 | 9 | 105 | 507 | 2 | 405 | 4.95e-166 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366220 | sp|Q9FLH8|SCRK7_ARATH | 63.694 | 314 | 94 | 3 | 207 | 502 | 23 | 334 | 1.12e-128 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366220 | A0A396JUR1 | 62.587 | 433 | 103 | 9 | 105 | 507 | 2 | 405 | 2.36e-166 | 486 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1366220 | Msa1378940 | 0.810406 | 1.171008e-50 | -8.615850e-47 |
| Msa1366220 | Msa1466540 | 0.800699 | 1.275214e-48 | -8.615850e-47 |
| Msa0648080 | Msa1366220 | 0.806294 | 8.821657e-50 | -8.615850e-47 |
| Msa0672690 | Msa1366220 | 0.804756 | 1.853839e-49 | -8.615850e-47 |
| Msa0703780 | Msa1366220 | 0.808326 | 3.272048e-50 | -8.615850e-47 |
| Msa0131770 | Msa1366220 | 0.808521 | 2.973912e-50 | -8.615850e-47 |
| Msa0167680 | Msa1366220 | 0.860149 | 2.526154e-63 | -8.615850e-47 |
| Msa1246510 | Msa1366220 | 0.800821 | 1.204094e-48 | -8.615850e-47 |
| Msa1249460 | Msa1366220 | 0.802567 | 5.276996e-49 | -8.615850e-47 |
| Msa1276890 | Msa1366220 | 0.809102 | 2.233430e-50 | -8.615850e-47 |
| Msa0382180 | Msa1366220 | 0.808859 | 2.517404e-50 | -8.615850e-47 |
| Msa0455040 | Msa1366220 | 0.804588 | 2.009892e-49 | -8.615850e-47 |
| Msa0999190 | Msa1366220 | 0.828738 | 7.606931e-55 | -8.615850e-47 |
| Msa1035480 | Msa1366220 | 0.802622 | 5.141771e-49 | -8.615850e-47 |
| Msa1088530 | Msa1366220 | 0.991536 | 3.594855e-188 | -8.615850e-47 |
| Msa0251640 | Msa1366220 | 0.824052 | 9.947255e-54 | -8.615850e-47 |
| Msa1121490 | Msa1366220 | 0.802285 | 6.030895e-49 | -8.615850e-47 |
| Msa1137570 | Msa1366220 | 0.820919 | 5.318271e-53 | -8.615850e-47 |
| Msa0545700 | Msa1366220 | 0.809742 | 1.627855e-50 | -8.615850e-47 |
| Msa0899430 | Msa1366220 | 0.806557 | 7.762470e-50 | -8.615850e-47 |
| Msa0927380 | Msa1366220 | 0.834385 | 3.089990e-56 | -8.615850e-47 |
| Msa0964900 | Msa1366220 | 0.809674 | 1.683692e-50 | -8.615850e-47 |
| Msa0969520 | Msa1366220 | 0.804731 | 1.876719e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366220 | MtrunA17_Chr1g0183241 | 62.587 | 433 | 103 | 9 | 105 | 507 | 2 | 405 | 4.55e-170 | 486 |
| Msa1366220 | MtrunA17_Chr1g0204101 | 73.030 | 330 | 68 | 4 | 196 | 507 | 13 | 339 | 2.57e-158 | 453 |
| Msa1366220 | MtrunA17_Chr1g0177771 | 55.315 | 508 | 151 | 15 | 42 | 504 | 76 | 552 | 1.19e-151 | 444 |
| Msa1366220 | MtrunA17_Chr6g0474331 | 68.421 | 323 | 82 | 3 | 201 | 505 | 22 | 342 | 3.44e-146 | 423 |
| Msa1366220 | MtrunA17_Chr1g0177321 | 53.131 | 495 | 139 | 12 | 70 | 504 | 8 | 469 | 6.38e-141 | 414 |
| Msa1366220 | MtrunA17_Chr1g0171921 | 60.051 | 393 | 95 | 9 | 166 | 504 | 111 | 495 | 6.16e-132 | 393 |
| Msa1366220 | MtrunA17_Chr5g0434971 | 58.284 | 338 | 117 | 7 | 187 | 504 | 46 | 379 | 9.07e-114 | 341 |
| Msa1366220 | MtrunA17_Chr4g0033631 | 52.351 | 319 | 130 | 4 | 205 | 505 | 13 | 327 | 1.02e-100 | 306 |
| Msa1366220 | MtrunA17_Chr1g0188291 | 50.473 | 317 | 135 | 5 | 207 | 505 | 8 | 320 | 6.92e-100 | 303 |
| Msa1366220 | MtrunA17_Chr2g0329451 | 50.470 | 319 | 136 | 4 | 205 | 505 | 12 | 326 | 1.79e-99 | 303 |
| Msa1366220 | MtrunA17_Chr1g0183661 | 60.791 | 278 | 77 | 5 | 232 | 491 | 13 | 276 | 1.64e-98 | 299 |
| Msa1366220 | MtrunA17_Chr1g0176221 | 65.625 | 192 | 34 | 1 | 314 | 505 | 48 | 207 | 2.72e-72 | 228 |
| Msa1366220 | MtrunA17_Chr7g0246421 | 56.021 | 191 | 82 | 1 | 314 | 504 | 3 | 191 | 5.76e-67 | 214 |
| Msa1366220 | MtrunA17_Chr4g0020911 | 67.429 | 175 | 36 | 4 | 292 | 448 | 18 | 189 | 5.39e-61 | 199 |
| Msa1366220 | MtrunA17_Chr4g0008441 | 27.528 | 356 | 197 | 7 | 207 | 501 | 93 | 448 | 2.97e-34 | 134 |
| Msa1366220 | MtrunA17_Chr5g0419371 | 27.859 | 341 | 199 | 9 | 207 | 500 | 210 | 550 | 3.74e-34 | 135 |
| Msa1366220 | MtrunA17_Chr4g0020921 | 43.077 | 195 | 65 | 7 | 105 | 261 | 2 | 188 | 2.73e-29 | 116 |
| Msa1366220 | MtrunA17_Chr7g0246411 | 59.574 | 94 | 38 | 0 | 207 | 300 | 41 | 134 | 7.80e-27 | 106 |
| Msa1366220 | MtrunA17_Chr8g0386161 | 38.776 | 147 | 84 | 4 | 38 | 184 | 109 | 249 | 8.88e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1366220 | AT5G51830.2 | 63.694 | 314 | 94 | 3 | 207 | 502 | 23 | 334 | 1.14e-129 | 381 |
| Msa1366220 | AT5G51830.1 | 63.694 | 314 | 94 | 3 | 207 | 502 | 23 | 334 | 1.14e-129 | 381 |
| Msa1366220 | AT1G66430.1 | 54.986 | 351 | 134 | 7 | 172 | 502 | 29 | 375 | 9.93e-115 | 344 |
| Msa1366220 | AT4G10260.1 | 54.194 | 310 | 120 | 5 | 207 | 498 | 6 | 311 | 2.91e-101 | 307 |
| Msa1366220 | AT1G06030.1 | 49.695 | 328 | 143 | 4 | 199 | 508 | 3 | 326 | 3.10e-99 | 302 |
| Msa1366220 | AT2G31390.1 | 49.691 | 324 | 141 | 5 | 200 | 505 | 2 | 321 | 3.41e-98 | 300 |
| Msa1366220 | AT1G06020.1 | 48.308 | 325 | 146 | 4 | 199 | 505 | 2 | 322 | 2.76e-95 | 293 |
| Msa1366220 | AT3G59480.1 | 48.758 | 322 | 143 | 5 | 199 | 502 | 2 | 319 | 4.92e-95 | 291 |
| Msa1366220 | AT1G50390.1 | 45.930 | 172 | 60 | 1 | 334 | 505 | 1 | 139 | 4.16e-41 | 145 |
| Msa1366220 | AT3G54090.1 | 29.213 | 356 | 192 | 8 | 207 | 502 | 103 | 458 | 5.43e-37 | 142 |
| Msa1366220 | AT1G69200.1 | 28.267 | 329 | 184 | 8 | 207 | 485 | 206 | 532 | 1.64e-31 | 129 |
| Msa1366220 | AT5G63540.2 | 28.782 | 271 | 169 | 8 | 44 | 314 | 143 | 389 | 1.21e-15 | 80.5 |
| Msa1366220 | AT5G63540.1 | 35.461 | 141 | 85 | 4 | 44 | 184 | 143 | 277 | 5.28e-15 | 78.2 |
Find 136 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAACCCTAGTGAATTAA+AGG | 0.212937 | tig0018446:-82658 | Msa1366220:CDS |
| GGTTCCGAGGGAACTCTTTC+AGG | 0.225694 | tig0018446:+82763 | None:intergenic |
| GCATGGAACTCATAAATTTA+TGG | 0.255111 | tig0018446:-82079 | Msa1366220:CDS |
| GTGTGTGCCTCTTGGATTAA+AGG | 0.266846 | tig0018446:-82297 | Msa1366220:intron |
| GAAGCTTGAGATTAGGATTA+GGG | 0.284752 | tig0018446:+80491 | None:intergenic |
| CTCTGACTTAAGGGATCTAT+TGG | 0.286430 | tig0018446:-82206 | Msa1366220:intron |
| CAGGCTAAAATATTCCATTA+TGG | 0.292003 | tig0018446:-80895 | Msa1366220:CDS |
| ATGGAATAGAGAAGCTAATA+AGG | 0.301023 | tig0018446:-82060 | Msa1366220:CDS |
| GAAAATAATGTTGATATATC+TGG | 0.307506 | tig0018446:-81136 | Msa1366220:CDS |
| CGATGGTCCCTTCATATTGC+AGG | 0.320003 | tig0018446:-82622 | Msa1366220:intron |
| ACTCTTTCAGGTTGGTTAAC+GGG | 0.342290 | tig0018446:+82775 | None:intergenic |
| CTCAAGCTTCTAATTGTTAC+CGG | 0.347684 | tig0018446:-80478 | Msa1366220:CDS |
| TAGGTTGGATCAGATGAATA+TGG | 0.354743 | tig0018446:-81184 | Msa1366220:CDS |
| AGAAGCTTGAGATTAGGATT+AGG | 0.357593 | tig0018446:+80490 | None:intergenic |
| AGTGGACTGGTTGTTTGTTT+TGG | 0.362156 | tig0018446:-81878 | Msa1366220:CDS |
| TTATCAATTTCTGTACTCAT+TGG | 0.363528 | tig0018446:-82448 | Msa1366220:CDS |
| CGAAATTGAGATTGGCACTA+TGG | 0.364731 | tig0018446:-80780 | Msa1366220:CDS |
| CCTATATTGCATAAAATTGC+AGG | 0.366702 | tig0018446:+79849 | None:intergenic |
| CATAGTGCCAATCTCAATTT+CGG | 0.370602 | tig0018446:+80781 | None:intergenic |
| TTCAAAACAACGAGATCAAA+AGG | 0.383283 | tig0018446:+79686 | None:intergenic |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.396668 | tig0018446:-81758 | Msa1366220:CDS |
| TATCAATTTCTGTACTCATT+GGG | 0.402045 | tig0018446:-82447 | Msa1366220:CDS |
| ACAATTAGAAGCTTGAGATT+AGG | 0.402862 | tig0018446:+80484 | None:intergenic |
| AACTCTTTCAGGTTGGTTAA+CGG | 0.403966 | tig0018446:+82774 | None:intergenic |
| AGTCTTGTACTGCAACATTC+AGG | 0.404914 | tig0018446:-79741 | Msa1366220:three_prime_UTR |
| GATCGGAAAACAGAAACTTC+TGG | 0.416380 | tig0018446:+82706 | None:intergenic |
| TCAAACCGATGAAACCATAA+TGG | 0.422923 | tig0018446:+80881 | None:intergenic |
| CCCTTTAATTCACTAGGGTT+AGG | 0.423783 | tig0018446:+82657 | None:intergenic |
| GGCAGTTGGCATCTCTAAGT+TGG | 0.428328 | tig0018446:-81759 | Msa1366220:CDS |
| CAACGTTGACTGACTGTGAC+TGG | 0.429125 | tig0018446:+82101 | None:intergenic |
| TGAATTACCTCGAAAATACT+TGG | 0.436297 | tig0018446:+80056 | None:intergenic |
| AGGTTGGATCAGATGAATAT+GGG | 0.438767 | tig0018446:-81183 | Msa1366220:CDS |
| GTTTGTGCGTGTGTGCCTCT+TGG | 0.441601 | tig0018446:-82305 | Msa1366220:CDS |
| ACAGATCAATATGTTGAGTT+GGG | 0.444557 | tig0018446:-79713 | Msa1366220:three_prime_UTR |
| GTTAAACCTGTCGACACAAC+TGG | 0.447474 | tig0018446:-80128 | Msa1366220:CDS |
| CCTTGGCCACTGTTCAATCA+TGG | 0.454789 | tig0018446:+79577 | None:intergenic |
| AACAGATCAATATGTTGAGT+TGG | 0.455366 | tig0018446:-79714 | Msa1366220:three_prime_UTR |
| CTGGTGATGCATTTGTTAGT+GGG | 0.458027 | tig0018446:-80103 | Msa1366220:CDS |
| GCATCTAGCCGATGTCATAA+AGG | 0.459308 | tig0018446:-80716 | Msa1366220:intron |
| TTATATTTCGCCAATGTATG+TGG | 0.459869 | tig0018446:-79929 | Msa1366220:CDS |
| AGGGATCTATTGGTACTTGT+AGG | 0.459955 | tig0018446:-82196 | Msa1366220:CDS |
| GCTGGTGATGCATTTGTTAG+TGG | 0.461233 | tig0018446:-80104 | Msa1366220:CDS |
| CTCTTTCAGGTTGGTTAACG+GGG | 0.464353 | tig0018446:+82776 | None:intergenic |
| TCTGGTTACAAGAAAGCTAT+TGG | 0.470303 | tig0018446:-81800 | Msa1366220:CDS |
| ACTTGTAGGTCGGCGTTCAA+TGG | 0.474161 | tig0018446:-82182 | Msa1366220:CDS |
| CTTCGAGCAGCCTCGGCTGA+TGG | 0.484267 | tig0018446:+80757 | None:intergenic |
| GAATCTCTTCCCCTTTCCCA+TGG | 0.488948 | tig0018446:+82822 | None:intergenic |
| ATATTCCATTATGGTTTCAT+CGG | 0.489571 | tig0018446:-80886 | Msa1366220:CDS |
| CACAGTCAGTCAACGTTGCA+TGG | 0.493522 | tig0018446:-82096 | Msa1366220:CDS |
| AAGGGGTGACAGCGGTTGAC+GGG | 0.495541 | tig0018446:+82742 | None:intergenic |
| GAAGTGGTATAATGAGCATA+TGG | 0.496433 | tig0018446:-80738 | Msa1366220:CDS |
| GAAACCAACCTGCAATATGA+AGG | 0.498129 | tig0018446:+82614 | None:intergenic |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.501143 | tig0018446:-81757 | Msa1366220:CDS |
| CTTGAATGGCTTCAAGAGGC+TGG | 0.502201 | tig0018446:+82327 | None:intergenic |
| GTATGATCCGAAATTGAGAT+TGG | 0.502636 | tig0018446:-80788 | Msa1366220:CDS |
| AGATGCAAAACCATGGGAAA+GGG | 0.504051 | tig0018446:-82832 | Msa1366220:CDS |
| CCTAACCCTAGTGAATTAAA+GGG | 0.505595 | tig0018446:-82657 | Msa1366220:CDS |
| AATACAACATCATCATCATA+AGG | 0.505738 | tig0018446:+80529 | None:intergenic |
| CACACACGCACAAACTTGAA+TGG | 0.506381 | tig0018446:+82313 | None:intergenic |
| TACCTCCTCCAGGTATTGAT+AGG | 0.507224 | tig0018446:-82409 | Msa1366220:CDS |
| AAGCTTCTAATTGTTACCGG+TGG | 0.508177 | tig0018446:-80475 | Msa1366220:CDS |
| TTCTAATTTCAACAACGCAT+TGG | 0.508694 | tig0018446:-81101 | Msa1366220:CDS |
| AAAATTTACCTTTATGACAT+CGG | 0.519416 | tig0018446:+80708 | None:intergenic |
| AATTGTTACCGGTGGGTCGG+AGG | 0.520536 | tig0018446:-80467 | Msa1366220:CDS |
| GAAGGGGTGACAGCGGTTGA+CGG | 0.523408 | tig0018446:+82741 | None:intergenic |
| AATATTAGAGTATTGGGAGG+AGG | 0.525399 | tig0018446:-82137 | Msa1366220:CDS |
| AGGTTGGTTAACGGGGCAAT+CGG | 0.525575 | tig0018446:+82783 | None:intergenic |
| GCAATCACGGTGACAGAGAG+AGG | 0.526214 | tig0018446:-79905 | Msa1366220:CDS |
| CCTGTCGACACAACTGGTGC+TGG | 0.527503 | tig0018446:-80122 | Msa1366220:CDS |
| GTTCTGCCCTTTAATTCACT+AGG | 0.534444 | tig0018446:+82651 | None:intergenic |
| CCAGCACCAGTTGTGTCGAC+AGG | 0.534814 | tig0018446:+80122 | None:intergenic |
| TTCTGGAAGAGGATATATGA+AGG | 0.535960 | tig0018446:+82723 | None:intergenic |
| AAAACAGAAACTTCTGGAAG+AGG | 0.538843 | tig0018446:+82712 | None:intergenic |
| TATACCACTTCGAGCAGCCT+CGG | 0.539494 | tig0018446:+80750 | None:intergenic |
| CGTGATTGCGCCACATACAT+TGG | 0.539771 | tig0018446:+79919 | None:intergenic |
| GACGGTGCATCAAAAGAGAC+TGG | 0.540843 | tig0018446:+81821 | None:intergenic |
| AGCTTCTAATTGTTACCGGT+GGG | 0.541169 | tig0018446:-80474 | Msa1366220:CDS |
| ATTGTTACCGGTGGGTCGGA+GGG | 0.542489 | tig0018446:-80466 | Msa1366220:CDS |
| TTCATCTGCATTTATAAGCA+AGG | 0.542858 | tig0018446:-81732 | Msa1366220:intron |
| CCGAGGGAACTCTTTCAGGT+TGG | 0.543468 | tig0018446:+82767 | None:intergenic |
| GATGGTGTTCATACAGTCCA+TGG | 0.546716 | tig0018446:-82365 | Msa1366220:CDS |
| ATAGAATTCGTGTCAACAGC+GGG | 0.552082 | tig0018446:-81845 | Msa1366220:CDS |
| ACTCATTGGGAGGAACTACA+AGG | 0.552126 | tig0018446:-82434 | Msa1366220:CDS |
| TTCTGCCCTTTAATTCACTA+GGG | 0.555314 | tig0018446:+82652 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.556296 | tig0018446:-81756 | Msa1366220:CDS |
| GAGATGCAAAACCATGGGAA+AGG | 0.558757 | tig0018446:-82833 | Msa1366220:CDS |
| ATCTATTGGTACTTGTAGGT+CGG | 0.559628 | tig0018446:-82192 | Msa1366220:CDS |
| ACTACCACAACAACGGAGAT+CGG | 0.562051 | tig0018446:+82689 | None:intergenic |
| CAATGTATGTGGCGCAATCA+CGG | 0.563805 | tig0018446:-79918 | Msa1366220:CDS |
| ACAGCGGTTGACGGGTTCCG+AGG | 0.564943 | tig0018446:+82750 | None:intergenic |
| AACGTTGACTGACTGTGACT+GGG | 0.566924 | tig0018446:+82102 | None:intergenic |
| GGTCAGAGGACTCCATTCCA+TGG | 0.570788 | tig0018446:+82348 | None:intergenic |
| CAATTTCTGTACTCATTGGG+AGG | 0.573563 | tig0018446:-82444 | Msa1366220:CDS |
| AACAACCTCCTATCAATACC+TGG | 0.575621 | tig0018446:+82401 | None:intergenic |
| TCTAATTGTTACCGGTGGGT+CGG | 0.577804 | tig0018446:-80470 | Msa1366220:CDS |
| TTTGATTGCTGAGCAATGCA+AGG | 0.578974 | tig0018446:-80863 | Msa1366220:CDS |
| CTCCTATCAATACCTGGAGG+AGG | 0.580181 | tig0018446:+82407 | None:intergenic |
| CAATCACGGTGACAGAGAGA+GGG | 0.582107 | tig0018446:-79904 | Msa1366220:CDS |
| CTCCTCCAGGTATTGATAGG+AGG | 0.583506 | tig0018446:-82406 | Msa1366220:CDS |
| CTGCAACAAAACAAGTGGAC+TGG | 0.590341 | tig0018446:-81891 | Msa1366220:CDS |
| TCAAAACAACGAGATCAAAA+GGG | 0.590796 | tig0018446:+79687 | None:intergenic |
| GGCTTCAAGAGGCTGGTCAG+AGG | 0.590950 | tig0018446:+82334 | None:intergenic |
| TCTGGAAGAGGATATATGAA+GGG | 0.593723 | tig0018446:+82724 | None:intergenic |
| CCAACCTGAAAGAGTTCCCT+CGG | 0.596388 | tig0018446:-82767 | Msa1366220:CDS |
| TCTACAACCCTCCGACCCAC+CGG | 0.597847 | tig0018446:+80459 | None:intergenic |
| AGAGTCTTTAGCAATTCTCA+AGG | 0.601079 | tig0018446:+80825 | None:intergenic |
| GGCACTATGGCCATCAGCCG+AGG | 0.605030 | tig0018446:-80767 | Msa1366220:CDS |
| GAATTACCTCGAAAATACTT+GGG | 0.606713 | tig0018446:+80057 | None:intergenic |
| GATGCAAAACCATGGGAAAG+GGG | 0.608412 | tig0018446:-82831 | Msa1366220:CDS |
| GGGAAGAGATGCAAAACCAT+GGG | 0.608642 | tig0018446:-82838 | Msa1366220:CDS |
| CTACAAGGGATACCTCCTCC+AGG | 0.609593 | tig0018446:-82419 | Msa1366220:CDS |
| TGTTCATACAGTCCATGGAA+TGG | 0.614560 | tig0018446:-82360 | Msa1366220:CDS |
| GCTAGCTGCAACAAAACAAG+TGG | 0.614874 | tig0018446:-81896 | Msa1366220:CDS |
| CAGCGGTTGACGGGTTCCGA+GGG | 0.618388 | tig0018446:+82751 | None:intergenic |
| GCTACTACAAACGTGGCAGT+TGG | 0.618953 | tig0018446:-81773 | Msa1366220:CDS |
| GGTTACAAGAAAGCTATTGG+TGG | 0.620203 | tig0018446:-81797 | Msa1366220:CDS |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.621474 | tig0018446:-81755 | Msa1366220:CDS |
| AGGGAAGAGATGCAAAACCA+TGG | 0.625245 | tig0018446:-82839 | Msa1366220:CDS |
| AAACCAACCTGCAATATGAA+GGG | 0.629222 | tig0018446:+82615 | None:intergenic |
| CTGGAAGAGGATATATGAAG+GGG | 0.635714 | tig0018446:+82725 | None:intergenic |
| ATAGCTTTCTTGTAACCAGA+CGG | 0.637866 | tig0018446:+81803 | None:intergenic |
| CAAACTTGAATGGCTTCAAG+AGG | 0.638894 | tig0018446:+82323 | None:intergenic |
| GAAGAAACCTTTAATCCAAG+AGG | 0.642317 | tig0018446:+82290 | None:intergenic |
| AAGGGCAGAACTACTCTCGA+TGG | 0.643882 | tig0018446:-82639 | Msa1366220:CDS |
| TCAGCCGAGGCTGCTCGAAG+TGG | 0.649399 | tig0018446:-80754 | Msa1366220:CDS |
| ACGGGGCAATCGGAAGTCTG+AGG | 0.651239 | tig0018446:+82793 | None:intergenic |
| AATCACGGTGACAGAGAGAG+GGG | 0.661525 | tig0018446:-79903 | Msa1366220:CDS |
| GATAGAATTCGTGTCAACAG+CGG | 0.667090 | tig0018446:-81846 | Msa1366220:CDS |
| AGATGAATATGGGCATACGT+TGG | 0.673369 | tig0018446:-81173 | Msa1366220:CDS |
| GATATATGAAGGGGTGACAG+CGG | 0.679219 | tig0018446:+82734 | None:intergenic |
| CTCATTGGGAGGAACTACAA+GGG | 0.696925 | tig0018446:-82433 | Msa1366220:CDS |
| AATTGTCCATGATTGAACAG+TGG | 0.709826 | tig0018446:-79583 | Msa1366220:three_prime_UTR |
| GTATAGCACTACCACAACAA+CGG | 0.718113 | tig0018446:+82682 | None:intergenic |
| TGGTGGTGCTACTACAAACG+TGG | 0.727262 | tig0018446:-81780 | Msa1366220:CDS |
| AACCTCCTATCAATACCTGG+AGG | 0.743647 | tig0018446:+82404 | None:intergenic |
| GGGTTGTAGATATTACACCC+AGG | 0.754805 | tig0018446:-80446 | Msa1366220:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTAACAATAAGAAAA+GGG | + | tig0018446:81060-81079 | None:intergenic | 10.0% |
| !! | AGTACTAAATTAAAATTATA+CGG | + | tig0018446:81500-81519 | None:intergenic | 10.0% |
| !! | TAATAACCATGATTATAAAT+AGG | - | tig0018446:80448-80467 | Msa1366220:CDS | 15.0% |
| !! | CTTAATTTAACAATAAGAAA+AGG | + | tig0018446:81061-81080 | None:intergenic | 15.0% |
| !! | TCCTAAAAATATTAGAGTAT+TGG | - | tig0018446:80276-80295 | Msa1366220:intron | 20.0% |
| !!! | CCTAAAAATATTAGAGTATT+GGG | - | tig0018446:80277-80296 | Msa1366220:intron | 20.0% |
| !! | AATCAACCTATTTATAATCA+TGG | + | tig0018446:80457-80476 | None:intergenic | 20.0% |
| !!! | TAGGTTGATTTTAATTTTTC+AGG | - | tig0018446:80467-80486 | Msa1366220:CDS | 20.0% |
| !!! | TATTTATTGACTTGGTTATT+TGG | - | tig0018446:80725-80744 | Msa1366220:CDS | 20.0% |
| !!! | ATTTATTACACTTTTCTGAA+TGG | - | tig0018446:80824-80843 | Msa1366220:CDS | 20.0% |
| !! | AAAATAGAAAATACGAGTAA+AGG | + | tig0018446:80960-80979 | None:intergenic | 20.0% |
| !! | AGTAAATACATGATATTTGT+AGG | + | tig0018446:81101-81120 | None:intergenic | 20.0% |
| !! | TAAAATTCAGAATACTACTA+CGG | + | tig0018446:81155-81174 | None:intergenic | 20.0% |
| !! | GAAAATAATGTTGATATATC+TGG | - | tig0018446:81284-81303 | Msa1366220:intron | 20.0% |
| !! | AAAATTTACCTTTATGACAT+CGG | + | tig0018446:81715-81734 | None:intergenic | 20.0% |
| !! | CAAAGAAAATAATGAAATGA+GGG | + | tig0018446:82056-82075 | None:intergenic | 20.0% |
| ! | TATTGTTTCAATTCTGTTTG+CGG | - | tig0018446:79905-79924 | Msa1366220:CDS | 25.0% |
| ! | TTATCAATTTCTGTACTCAT+TGG | - | tig0018446:79972-79991 | Msa1366220:intron | 25.0% |
| ! | TATCAATTTCTGTACTCATT+GGG | - | tig0018446:79973-79992 | Msa1366220:intron | 25.0% |
| ! | ACATTGTATATGCATGTATT+GGG | + | tig0018446:80180-80199 | None:intergenic | 25.0% |
| ! | AACATTGTATATGCATGTAT+TGG | + | tig0018446:80181-80200 | None:intergenic | 25.0% |
| !! | CCCAATACTCTAATATTTTT+AGG | + | tig0018446:80280-80299 | None:intergenic | 25.0% |
| !!! | AAAAATATTAGAGTATTGGG+AGG | - | tig0018446:80280-80299 | Msa1366220:intron | 25.0% |
| !! | TCTATGTCTATTTATTGACT+TGG | - | tig0018446:80717-80736 | Msa1366220:CDS | 25.0% |
| ! | CTTAATGAACAAATCAAACA+TGG | + | tig0018446:80776-80795 | None:intergenic | 25.0% |
| ! | TTAAGAAATCTATGATGTGT+TGG | - | tig0018446:80791-80810 | Msa1366220:CDS | 25.0% |
| ! | TAAGAAATCTATGATGTGTT+GGG | - | tig0018446:80792-80811 | Msa1366220:CDS | 25.0% |
| ! | TAAAGTCGTTTCTATTTGAT+GGG | + | tig0018446:80988-81007 | None:intergenic | 25.0% |
| ! | TTAAAGTCGTTTCTATTTGA+TGG | + | tig0018446:80989-81008 | None:intergenic | 25.0% |
| ! | AACAATAAGAAAAGGGAAAA+AGG | + | tig0018446:81053-81072 | None:intergenic | 25.0% |
| ! | AAAATTCAGAATACTACTAC+GGG | + | tig0018446:81154-81173 | None:intergenic | 25.0% |
| !! | ATTCTGAATTTTAGACATGA+TGG | - | tig0018446:81162-81181 | Msa1366220:CDS | 25.0% |
| ! | ATTATACGGACTTAAACTAT+CGG | + | tig0018446:81486-81505 | None:intergenic | 25.0% |
| !!! | TTTAATTTAGTACTGATTGC+AGG | - | tig0018446:81506-81525 | Msa1366220:intron | 25.0% |
| ! | ATATTCCATTATGGTTTCAT+CGG | - | tig0018446:81534-81553 | Msa1366220:intron | 25.0% |
| !!! | ATTACTTTTTTGATTGATCG+AGG | - | tig0018446:81864-81883 | Msa1366220:CDS | 25.0% |
| ! | AATACAACATCATCATCATA+AGG | + | tig0018446:81894-81913 | None:intergenic | 25.0% |
| ! | GCAAAGAAAATAATGAAATG+AGG | + | tig0018446:82057-82076 | None:intergenic | 25.0% |
| !! | GATTACTAAATTTTTGTGCA+GGG | - | tig0018446:82241-82260 | Msa1366220:intron | 25.0% |
| AAATAAAGAATACAACCGAC+CGG | + | tig0018446:79841-79860 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGACAATGACTGA+TGG | - | tig0018446:80037-80056 | Msa1366220:intron | 30.0% |
| !! | ATTTGCTATTCTCTGACTTA+AGG | - | tig0018446:80204-80223 | Msa1366220:intron | 30.0% |
| !! | TTTGCTATTCTCTGACTTAA+GGG | - | tig0018446:80205-80224 | Msa1366220:intron | 30.0% |
| GCATGGAACTCATAAATTTA+TGG | - | tig0018446:80341-80360 | Msa1366220:intron | 30.0% | |
| ATGGAATAGAGAAGCTAATA+AGG | - | tig0018446:80360-80379 | Msa1366220:intron | 30.0% | |
| GTTATTACTATATGATCACG+TGG | + | tig0018446:80435-80454 | None:intergenic | 30.0% | |
| TTCATCTGCATTTATAAGCA+AGG | - | tig0018446:80688-80707 | Msa1366220:intron | 30.0% | |
| GAATGTAACATTGTCATGTT+CGG | - | tig0018446:80918-80937 | Msa1366220:intron | 30.0% | |
| AATGTAACATTGTCATGTTC+GGG | - | tig0018446:80919-80938 | Msa1366220:intron | 30.0% | |
| AAAAGGGAAAAAGGTAGAAT+GGG | + | tig0018446:81044-81063 | None:intergenic | 30.0% | |
| TTTACTTGTAGATTGTACCT+AGG | - | tig0018446:81115-81134 | Msa1366220:CDS | 30.0% | |
| !! | TACGTTGGCTGATATTTTAA+AGG | - | tig0018446:81262-81281 | Msa1366220:intron | 30.0% |
| TTCTAATTTCAACAACGCAT+TGG | - | tig0018446:81319-81338 | Msa1366220:intron | 30.0% | |
| ! | TTTTGTACACTTAAAGCTGA+CGG | - | tig0018446:81343-81362 | Msa1366220:intron | 30.0% |
| TGAACAGAGATGGAAATTAA+AGG | + | tig0018446:81457-81476 | None:intergenic | 30.0% | |
| CAGGCTAAAATATTCCATTA+TGG | - | tig0018446:81525-81544 | Msa1366220:intron | 30.0% | |
| GAAAAAAGAATGACATGCAA+TGG | + | tig0018446:81784-81803 | None:intergenic | 30.0% | |
| ACAATTAGAAGCTTGAGATT+AGG | + | tig0018446:81939-81958 | None:intergenic | 30.0% | |
| AAATCCGAGTTAAATGACTT+TGG | + | tig0018446:82008-82027 | None:intergenic | 30.0% | |
| ! | CGGATTTTTATTGTCTGAAT+AGG | - | tig0018446:82021-82040 | Msa1366220:intron | 30.0% |
| TTGCTCTTTATTCTGATGAA+TGG | - | tig0018446:82073-82092 | Msa1366220:CDS | 30.0% | |
| ! | CGATTACTAAATTTTTGTGC+AGG | - | tig0018446:82240-82259 | Msa1366220:intron | 30.0% |
| !! | ATTTTTGTGCAGGGTTTTAA+AGG | - | tig0018446:82250-82269 | Msa1366220:intron | 30.0% |
| GAATTACCTCGAAAATACTT+GGG | + | tig0018446:82366-82385 | None:intergenic | 30.0% | |
| TGAATTACCTCGAAAATACT+TGG | + | tig0018446:82367-82386 | None:intergenic | 30.0% | |
| TTATATTTCGCCAATGTATG+TGG | - | tig0018446:82491-82510 | Msa1366220:intron | 30.0% | |
| CCTATATTGCATAAAATTGC+AGG | + | tig0018446:82574-82593 | None:intergenic | 30.0% | |
| ! | CCTGCAATTTTATGCAATAT+AGG | - | tig0018446:82571-82590 | Msa1366220:intron | 30.0% |
| ATGTAATATCTGTTGACACA+TGG | - | tig0018446:82612-82631 | Msa1366220:intron | 30.0% | |
| AACAGATCAATATGTTGAGT+TGG | - | tig0018446:82706-82725 | Msa1366220:CDS | 30.0% | |
| ACAGATCAATATGTTGAGTT+GGG | - | tig0018446:82707-82726 | Msa1366220:CDS | 30.0% | |
| TCAAAACAACGAGATCAAAA+GGG | + | tig0018446:82736-82755 | None:intergenic | 30.0% | |
| TTCAAAACAACGAGATCAAA+AGG | + | tig0018446:82737-82756 | None:intergenic | 30.0% | |
| ! | GTAGAAACTATTTTCATGTG+TGG | - | tig0018446:82773-82792 | Msa1366220:CDS | 30.0% |
| ! | TATTTTCATGTGTGGATGTA+AGG | - | tig0018446:82781-82800 | Msa1366220:CDS | 30.0% |
| !! | AACTCTTTCAGGTTGGTTAA+CGG | + | tig0018446:79649-79668 | None:intergenic | 35.0% |
| TCTGGAAGAGGATATATGAA+GGG | + | tig0018446:79699-79718 | None:intergenic | 35.0% | |
| ! | TTCTGGAAGAGGATATATGA+AGG | + | tig0018446:79700-79719 | None:intergenic | 35.0% |
| ! | AAAACAGAAACTTCTGGAAG+AGG | + | tig0018446:79711-79730 | None:intergenic | 35.0% |
| TCCTAACCCTAGTGAATTAA+AGG | - | tig0018446:79762-79781 | Msa1366220:three_prime_UTR | 35.0% | |
| CCTAACCCTAGTGAATTAAA+GGG | - | tig0018446:79763-79782 | Msa1366220:three_prime_UTR | 35.0% | |
| TTCTGCCCTTTAATTCACTA+GGG | + | tig0018446:79771-79790 | None:intergenic | 35.0% | |
| AAACCAACCTGCAATATGAA+GGG | + | tig0018446:79808-79827 | None:intergenic | 35.0% | |
| GAAGAAACCTTTAATCCAAG+AGG | + | tig0018446:80133-80152 | None:intergenic | 35.0% | |
| ATGCATGTATTGGGATGAAA+AGG | + | tig0018446:80171-80190 | None:intergenic | 35.0% | |
| ATCTATTGGTACTTGTAGGT+CGG | - | tig0018446:80228-80247 | Msa1366220:intron | 35.0% | |
| !! | AATATTAGAGTATTGGGAGG+AGG | - | tig0018446:80283-80302 | Msa1366220:intron | 35.0% |
| ATAGCTTTCTTGTAACCAGA+CGG | + | tig0018446:80620-80639 | None:intergenic | 35.0% | |
| TCTGGTTACAAGAAAGCTAT+TGG | - | tig0018446:80620-80639 | Msa1366220:intron | 35.0% | |
| GGTTTCTTGTTACTATCTAC+AGG | - | tig0018446:80746-80765 | Msa1366220:CDS | 35.0% | |
| AAAGGGAAAAAGGTAGAATG+GGG | + | tig0018446:81043-81062 | None:intergenic | 35.0% | |
| GAAAAGGGAAAAAGGTAGAA+TGG | + | tig0018446:81045-81064 | None:intergenic | 35.0% | |
| !! | CGGGAAGTATTATTATTCCT+AGG | + | tig0018446:81135-81154 | None:intergenic | 35.0% |
| ! | AGACATGATGGAATCTATGT+TGG | - | tig0018446:81174-81193 | Msa1366220:CDS | 35.0% |
| ATCTGATCCAACCTAAAACA+CGG | + | tig0018446:81231-81250 | None:intergenic | 35.0% | |
| ! | TAGGTTGGATCAGATGAATA+TGG | - | tig0018446:81236-81255 | Msa1366220:intron | 35.0% |
| AGGTTGGATCAGATGAATAT+GGG | - | tig0018446:81237-81256 | Msa1366220:intron | 35.0% | |
| TCAAACCGATGAAACCATAA+TGG | + | tig0018446:81542-81561 | None:intergenic | 35.0% | |
| AGAGTCTTTAGCAATTCTCA+AGG | + | tig0018446:81598-81617 | None:intergenic | 35.0% | |
| GTATGATCCGAAATTGAGAT+TGG | - | tig0018446:81632-81651 | Msa1366220:intron | 35.0% | |
| CATAGTGCCAATCTCAATTT+CGG | + | tig0018446:81642-81661 | None:intergenic | 35.0% | |
| GAAGTGGTATAATGAGCATA+TGG | - | tig0018446:81682-81701 | Msa1366220:intron | 35.0% | |
| GAAGCTTGAGATTAGGATTA+GGG | + | tig0018446:81932-81951 | None:intergenic | 35.0% | |
| AGAAGCTTGAGATTAGGATT+AGG | + | tig0018446:81933-81952 | None:intergenic | 35.0% | |
| CTCAAGCTTCTAATTGTTAC+CGG | - | tig0018446:81942-81961 | Msa1366220:intron | 35.0% | |
| CTTGCCAAAGTCATTTAACT+CGG | - | tig0018446:82001-82020 | Msa1366220:intron | 35.0% | |
| !! | TGATGAATGGACTGAAATGT+TGG | - | tig0018446:82086-82105 | Msa1366220:CDS | 35.0% |
| AGAAAAAAGTTGCGAGTGTT+TGG | - | tig0018446:82417-82436 | Msa1366220:CDS | 35.0% | |
| ! | TGGCGAAATATAACGCTTTT+TGG | + | tig0018446:82484-82503 | None:intergenic | 35.0% |
| GCTATCAAAACAAAGTCAGA+AGG | + | tig0018446:82647-82666 | None:intergenic | 35.0% | |
| GGTGAAAAACAATTGTGTGA+TGG | - | tig0018446:82802-82821 | Msa1366220:CDS | 35.0% | |
| AGATGCAAAACCATGGGAAA+GGG | - | tig0018446:79588-79607 | Msa1366220:three_prime_UTR | 40.0% | |
| !! | ACTCTTTCAGGTTGGTTAAC+GGG | + | tig0018446:79648-79667 | None:intergenic | 40.0% |
| CTGGAAGAGGATATATGAAG+GGG | + | tig0018446:79698-79717 | None:intergenic | 40.0% | |
| GATCGGAAAACAGAAACTTC+TGG | + | tig0018446:79717-79736 | None:intergenic | 40.0% | |
| GTATAGCACTACCACAACAA+CGG | + | tig0018446:79741-79760 | None:intergenic | 40.0% | |
| CCCTTTAATTCACTAGGGTT+AGG | + | tig0018446:79766-79785 | None:intergenic | 40.0% | |
| GTTCTGCCCTTTAATTCACT+AGG | + | tig0018446:79772-79791 | None:intergenic | 40.0% | |
| GAAACCAACCTGCAATATGA+AGG | + | tig0018446:79809-79828 | None:intergenic | 40.0% | |
| !! | GGTTGGTTTCAATTTCGATC+CGG | - | tig0018446:79819-79838 | Msa1366220:three_prime_UTR | 40.0% |
| CAATTTCTGTACTCATTGGG+AGG | - | tig0018446:79976-79995 | Msa1366220:intron | 40.0% | |
| AACAACCTCCTATCAATACC+TGG | + | tig0018446:80022-80041 | None:intergenic | 40.0% | |
| TGTTCATACAGTCCATGGAA+TGG | - | tig0018446:80060-80079 | Msa1366220:intron | 40.0% | |
| CAAACTTGAATGGCTTCAAG+AGG | + | tig0018446:80100-80119 | None:intergenic | 40.0% | |
| ATTGGGATGAAAAGGATGAC+TGG | + | tig0018446:80163-80182 | None:intergenic | 40.0% | |
| CTCTGACTTAAGGGATCTAT+TGG | - | tig0018446:80214-80233 | Msa1366220:intron | 40.0% | |
| AGGGATCTATTGGTACTTGT+AGG | - | tig0018446:80224-80243 | Msa1366220:intron | 40.0% | |
| TCATGGTTATAGTACTTGCC+TGG | + | tig0018446:80404-80423 | None:intergenic | 40.0% | |
| ATCACGTGGACACTTAATCA+TGG | + | tig0018446:80421-80440 | None:intergenic | 40.0% | |
| CCTTCTGTTATGAGATCATC+AGG | + | tig0018446:80505-80524 | None:intergenic | 40.0% | |
| CCTGATGATCTCATAACAGA+AGG | - | tig0018446:80502-80521 | Msa1366220:CDS | 40.0% | |
| !!! | AGTGGACTGGTTGTTTGTTT+TGG | - | tig0018446:80542-80561 | Msa1366220:CDS | 40.0% |
| GATAGAATTCGTGTCAACAG+CGG | - | tig0018446:80574-80593 | Msa1366220:CDS | 40.0% | |
| ATAGAATTCGTGTCAACAGC+GGG | - | tig0018446:80575-80594 | Msa1366220:intron | 40.0% | |
| GGTTACAAGAAAGCTATTGG+TGG | - | tig0018446:80623-80642 | Msa1366220:intron | 40.0% | |
| ACTCCATGAAAAGTGAGCTT+GGG | - | tig0018446:80896-80915 | Msa1366220:intron | 40.0% | |
| !! | ATTCCCAAGCTCACTTTTCA+TGG | + | tig0018446:80902-80921 | None:intergenic | 40.0% |
| ! | TGGGTAAGTTATGGTTGGTT+AGG | + | tig0018446:81014-81033 | None:intergenic | 40.0% |
| GGAAATGGGTAAGTTATGGT+TGG | + | tig0018446:81019-81038 | None:intergenic | 40.0% | |
| ! | CTCTTTACCATCCGTGTTTT+AGG | - | tig0018446:81217-81236 | Msa1366220:intron | 40.0% |
| !! | TTACCATCCGTGTTTTAGGT+TGG | - | tig0018446:81221-81240 | Msa1366220:intron | 40.0% |
| AGATGAATATGGGCATACGT+TGG | - | tig0018446:81247-81266 | Msa1366220:intron | 40.0% | |
| !! | TCCTAGTGCTGATTTGAATC+TGG | - | tig0018446:81393-81412 | Msa1366220:intron | 40.0% |
| TCCAGATTCAAATCAGCACT+AGG | + | tig0018446:81397-81416 | None:intergenic | 40.0% | |
| TGATCATGACCTCATCAAGA+AGG | - | tig0018446:81429-81448 | Msa1366220:intron | 40.0% | |
| !! | TTAAAGGCACCTTCTTGATG+AGG | + | tig0018446:81441-81460 | None:intergenic | 40.0% |
| ! | TCGGTCTTTTTGAACAGAGA+TGG | + | tig0018446:81467-81486 | None:intergenic | 40.0% |
| TTTGATTGCTGAGCAATGCA+AGG | - | tig0018446:81557-81576 | Msa1366220:intron | 40.0% | |
| CGAAATTGAGATTGGCACTA+TGG | - | tig0018446:81640-81659 | Msa1366220:intron | 40.0% | |
| AAGCTTCTAATTGTTACCGG+TGG | - | tig0018446:81945-81964 | Msa1366220:intron | 40.0% | |
| AGCTTCTAATTGTTACCGGT+GGG | - | tig0018446:81946-81965 | Msa1366220:intron | 40.0% | |
| GACACTCAATGACGAATATC+AGG | - | tig0018446:82141-82160 | Msa1366220:CDS | 40.0% | |
| CAGGTTGTAAAACTTGAGCA+AGG | - | tig0018446:82160-82179 | Msa1366220:CDS | 40.0% | |
| !!! | CAGGGTTTTAAAGGCAAAGT+TGG | - | tig0018446:82259-82278 | Msa1366220:intron | 40.0% |
| !!! | GGTTTTAAAGGCAAAGTTGG+AGG | - | tig0018446:82262-82281 | Msa1366220:intron | 40.0% |
| ! | CTGGTGATGCATTTGTTAGT+GGG | - | tig0018446:82317-82336 | Msa1366220:CDS | 40.0% |
| ! | TTCTGACCCAAGTATTTTCG+AGG | - | tig0018446:82357-82376 | Msa1366220:CDS | 40.0% |
| !! | GTTGATGCAGCTATTTTGTG+TGG | - | tig0018446:82441-82460 | Msa1366220:CDS | 40.0% |
| ! | AGTCTTGTACTGCAACATTC+AGG | - | tig0018446:82679-82698 | Msa1366220:CDS | 40.0% |
| GAGATGCAAAACCATGGGAA+AGG | - | tig0018446:79587-79606 | Msa1366220:three_prime_UTR | 45.0% | |
| GATGCAAAACCATGGGAAAG+GGG | - | tig0018446:79589-79608 | Msa1366220:three_prime_UTR | 45.0% | |
| !! | CTCTTTCAGGTTGGTTAACG+GGG | + | tig0018446:79647-79666 | None:intergenic | 45.0% |
| GATATATGAAGGGGTGACAG+CGG | + | tig0018446:79689-79708 | None:intergenic | 45.0% | |
| ! | TTTTCCGATCTCCGTTGTTG+TGG | - | tig0018446:79727-79746 | Msa1366220:three_prime_UTR | 45.0% |
| ACTACCACAACAACGGAGAT+CGG | + | tig0018446:79734-79753 | None:intergenic | 45.0% | |
| GGTTTCAATTTCGATCCGGT+CGG | - | tig0018446:79823-79842 | Msa1366220:three_prime_UTR | 45.0% | |
| ! | CATTTGGGTGTGAAGTGTTC+AGG | + | tig0018446:79933-79952 | None:intergenic | 45.0% |
| CACTTCACACCCAAATGCAT+TGG | - | tig0018446:79936-79955 | Msa1366220:CDS | 45.0% | |
| ATCGACCTGCCAATGCATTT+GGG | + | tig0018446:79948-79967 | None:intergenic | 45.0% | |
| TATCGACCTGCCAATGCATT+TGG | + | tig0018446:79949-79968 | None:intergenic | 45.0% | |
| ACTCATTGGGAGGAACTACA+AGG | - | tig0018446:79986-80005 | Msa1366220:intron | 45.0% | |
| CTCATTGGGAGGAACTACAA+GGG | - | tig0018446:79987-80006 | Msa1366220:intron | 45.0% | |
| !! | TACCTCCTCCAGGTATTGAT+AGG | - | tig0018446:80011-80030 | Msa1366220:intron | 45.0% |
| AACCTCCTATCAATACCTGG+AGG | + | tig0018446:80019-80038 | None:intergenic | 45.0% | |
| GATGGTGTTCATACAGTCCA+TGG | - | tig0018446:80055-80074 | Msa1366220:intron | 45.0% | |
| CACACACGCACAAACTTGAA+TGG | + | tig0018446:80110-80129 | None:intergenic | 45.0% | |
| GTGTGTGCCTCTTGGATTAA+AGG | - | tig0018446:80123-80142 | Msa1366220:CDS | 45.0% | |
| ! | AACGTTGACTGACTGTGACT+GGG | + | tig0018446:80321-80340 | None:intergenic | 45.0% |
| TATAGTACTTGCCTGGACAC+AGG | + | tig0018446:80397-80416 | None:intergenic | 45.0% | |
| GCTAGCTGCAACAAAACAAG+TGG | - | tig0018446:80524-80543 | Msa1366220:CDS | 45.0% | |
| CTGCAACAAAACAAGTGGAC+TGG | - | tig0018446:80529-80548 | Msa1366220:CDS | 45.0% | |
| GCAGTTGGCATCTCTAAGTT+GGG | - | tig0018446:80662-80681 | Msa1366220:intron | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | - | tig0018446:80663-80682 | Msa1366220:intron | 45.0% | |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | - | tig0018446:80664-80683 | Msa1366220:intron | 45.0% |
| GACTCCATGAAAAGTGAGCT+TGG | - | tig0018446:80895-80914 | Msa1366220:CDS | 45.0% | |
| ! | TGTCATGTTCGGGCATTTTG+AGG | - | tig0018446:80929-80948 | Msa1366220:intron | 45.0% |
| GGGTGGAAATGGGTAAGTTA+TGG | + | tig0018446:81023-81042 | None:intergenic | 45.0% | |
| AGGTAGAATGGGGTGGAAAT+GGG | + | tig0018446:81033-81052 | None:intergenic | 45.0% | |
| AAGGTAGAATGGGGTGGAAA+TGG | + | tig0018446:81034-81053 | None:intergenic | 45.0% | |
| GATCCAACCTAAAACACGGA+TGG | + | tig0018446:81227-81246 | None:intergenic | 45.0% | |
| !! | GAGCGCAAGTTCTTGCTTTT+CGG | - | tig0018446:81367-81386 | Msa1366220:intron | 45.0% |
| GCATCTAGCCGATGTCATAA+AGG | - | tig0018446:81704-81723 | Msa1366220:intron | 45.0% | |
| TCTAATTGTTACCGGTGGGT+CGG | - | tig0018446:81950-81969 | Msa1366220:intron | 45.0% | |
| GGGTTGTAGATATTACACCC+AGG | - | tig0018446:81974-81993 | Msa1366220:intron | 45.0% | |
| TGACTTTGGCAAGCTTACCT+GGG | + | tig0018446:81994-82013 | None:intergenic | 45.0% | |
| ATGACTTTGGCAAGCTTACC+TGG | + | tig0018446:81995-82014 | None:intergenic | 45.0% | |
| GTTAAACCTGTCGACACAAC+TGG | - | tig0018446:82292-82311 | Msa1366220:intron | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | - | tig0018446:82316-82335 | Msa1366220:CDS | 45.0% |
| !! | ATGCAGCTATTTTGTGTGGC+AGG | - | tig0018446:82445-82464 | Msa1366220:CDS | 45.0% |
| ! | CTATTTTGTGTGGCAGGATG+AGG | - | tig0018446:82451-82470 | Msa1366220:CDS | 45.0% |
| CAATGTATGTGGCGCAATCA+CGG | - | tig0018446:82502-82521 | Msa1366220:intron | 45.0% | |
| ! | TGCAGGACAGCATCTTTTGT+AGG | + | tig0018446:82557-82576 | None:intergenic | 45.0% |
| GAATCTCTTCCCCTTTCCCA+TGG | + | tig0018446:79601-79620 | None:intergenic | 50.0% | |
| ! | AGGTTGGTTAACGGGGCAAT+CGG | + | tig0018446:79640-79659 | None:intergenic | 50.0% |
| CCAACCTGAAAGAGTTCCCT+CGG | - | tig0018446:79653-79672 | Msa1366220:three_prime_UTR | 50.0% | |
| AAGGGCAGAACTACTCTCGA+TGG | - | tig0018446:79781-79800 | Msa1366220:intron | 50.0% | |
| CGATGGTCCCTTCATATTGC+AGG | - | tig0018446:79798-79817 | Msa1366220:intron | 50.0% | |
| GGTCCCTTCATATTGCAGGT+TGG | - | tig0018446:79802-79821 | Msa1366220:intron | 50.0% | |
| ! | TCACACCCAAATGCATTGGC+AGG | - | tig0018446:79940-79959 | Msa1366220:CDS | 50.0% |
| CTCCTATCAATACCTGGAGG+AGG | + | tig0018446:80016-80035 | None:intergenic | 50.0% | |
| !! | CTCCTCCAGGTATTGATAGG+AGG | - | tig0018446:80014-80033 | Msa1366220:intron | 50.0% |
| CTTGAATGGCTTCAAGAGGC+TGG | + | tig0018446:80096-80115 | None:intergenic | 50.0% | |
| GGGATGAAAAGGATGACTGG+TGG | + | tig0018446:80160-80179 | None:intergenic | 50.0% | |
| ACTTGTAGGTCGGCGTTCAA+TGG | - | tig0018446:80238-80257 | Msa1366220:intron | 50.0% | |
| ! | CAACGTTGACTGACTGTGAC+TGG | + | tig0018446:80322-80341 | None:intergenic | 50.0% |
| CACAGTCAGTCAACGTTGCA+TGG | - | tig0018446:80324-80343 | Msa1366220:intron | 50.0% | |
| GACGGTGCATCAAAAGAGAC+TGG | + | tig0018446:80602-80621 | None:intergenic | 50.0% | |
| ! | GTCTCTTTTGATGCACCGTC+TGG | - | tig0018446:80602-80621 | Msa1366220:intron | 50.0% |
| !! | TGGTGGTGCTACTACAAACG+TGG | - | tig0018446:80640-80659 | Msa1366220:intron | 50.0% |
| GCTACTACAAACGTGGCAGT+TGG | - | tig0018446:80647-80666 | Msa1366220:intron | 50.0% | |
| GGCAGTTGGCATCTCTAAGT+TGG | - | tig0018446:80661-80680 | Msa1366220:intron | 50.0% | |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | - | tig0018446:80665-80684 | Msa1366220:intron | 50.0% |
| GGGAAAAAGGTAGAATGGGG+TGG | + | tig0018446:81040-81059 | None:intergenic | 50.0% | |
| TATACCACTTCGAGCAGCCT+CGG | + | tig0018446:81673-81692 | None:intergenic | 50.0% | |
| AATCGCTGTTAGCTGAACGC+TGG | + | tig0018446:82225-82244 | None:intergenic | 50.0% | |
| CGTGATTGCGCCACATACAT+TGG | + | tig0018446:82504-82523 | None:intergenic | 50.0% | |
| CAATCACGGTGACAGAGAGA+GGG | - | tig0018446:82516-82535 | Msa1366220:intron | 50.0% | |
| AATCACGGTGACAGAGAGAG+GGG | - | tig0018446:82517-82536 | Msa1366220:intron | 50.0% | |
| ! | CCGAGGGAACTCTTTCAGGT+TGG | + | tig0018446:79656-79675 | None:intergenic | 55.0% |
| GGTTCCGAGGGAACTCTTTC+AGG | + | tig0018446:79660-79679 | None:intergenic | 55.0% | |
| CTACAAGGGATACCTCCTCC+AGG | - | tig0018446:80001-80020 | Msa1366220:intron | 55.0% | |
| GGTCAGAGGACTCCATTCCA+TGG | + | tig0018446:80075-80094 | None:intergenic | 55.0% | |
| GTTTGTGCGTGTGTGCCTCT+TGG | - | tig0018446:80115-80134 | Msa1366220:CDS | 55.0% | |
| ATGCAGTACCTCCTGTGTCC+AGG | - | tig0018446:80383-80402 | Msa1366220:intron | 55.0% | |
| AGTACTTGCCTGGACACAGG+AGG | + | tig0018446:80394-80413 | None:intergenic | 55.0% | |
| AATTGTTACCGGTGGGTCGG+AGG | - | tig0018446:81953-81972 | Msa1366220:intron | 55.0% | |
| ATTGTTACCGGTGGGTCGGA+GGG | - | tig0018446:81954-81973 | Msa1366220:intron | 55.0% | |
| GCAATCACGGTGACAGAGAG+AGG | - | tig0018446:82515-82534 | Msa1366220:intron | 55.0% | |
| ACGGGGCAATCGGAAGTCTG+AGG | + | tig0018446:79630-79649 | None:intergenic | 60.0% | |
| AAGGGGTGACAGCGGTTGAC+GGG | + | tig0018446:79681-79700 | None:intergenic | 60.0% | |
| GAAGGGGTGACAGCGGTTGA+CGG | + | tig0018446:79682-79701 | None:intergenic | 60.0% | |
| ! | GGCTTCAAGAGGCTGGTCAG+AGG | + | tig0018446:80089-80108 | None:intergenic | 60.0% |
| TCTACAACCCTCCGACCCAC+CGG | + | tig0018446:81964-81983 | None:intergenic | 60.0% | |
| ! | CCAGCACCAGTTGTGTCGAC+AGG | + | tig0018446:82301-82320 | None:intergenic | 60.0% |
| CCTGTCGACACAACTGGTGC+TGG | - | tig0018446:82298-82317 | Msa1366220:CDS | 60.0% | |
| !! | CAGCGGTTGACGGGTTCCGA+GGG | + | tig0018446:79672-79691 | None:intergenic | 65.0% |
| !! | ACAGCGGTTGACGGGTTCCG+AGG | + | tig0018446:79673-79692 | None:intergenic | 65.0% |
| GGCACTATGGCCATCAGCCG+AGG | - | tig0018446:81653-81672 | Msa1366220:intron | 65.0% | |
| CTTCGAGCAGCCTCGGCTGA+TGG | + | tig0018446:81666-81685 | None:intergenic | 65.0% | |
| TCAGCCGAGGCTGCTCGAAG+TGG | - | tig0018446:81666-81685 | Msa1366220:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018446 | gene | 79583 | 82859 | 79583 | ID=Msa1366220;Name=Msa1366220 |
| tig0018446 | mRNA | 79583 | 82859 | 79583 | ID=Msa1366220-mRNA-1;Parent=Msa1366220;Name=Msa1366220-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.77|0.6|1|0.77|0.7|10|238|508 |
| tig0018446 | exon | 79583 | 79789 | 79583 | ID=Msa1366220-mRNA-1:exon:15016;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 79819 | 79975 | 79819 | ID=Msa1366220-mRNA-1:exon:15015;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 80064 | 80180 | 80064 | ID=Msa1366220-mRNA-1:exon:15014;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 80447 | 80593 | 80447 | ID=Msa1366220-mRNA-1:exon:15013;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 80717 | 80914 | 80717 | ID=Msa1366220-mRNA-1:exon:15012;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 81045 | 81203 | 81045 | ID=Msa1366220-mRNA-1:exon:15011;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 81733 | 81921 | 81733 | ID=Msa1366220-mRNA-1:exon:15010;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 82046 | 82216 | 82046 | ID=Msa1366220-mRNA-1:exon:15009;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 82298 | 82480 | 82298 | ID=Msa1366220-mRNA-1:exon:15008;Parent=Msa1366220-mRNA-1 |
| tig0018446 | exon | 82623 | 82859 | 82623 | ID=Msa1366220-mRNA-1:exon:15007;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 82623 | 82859 | 82623 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 82298 | 82480 | 82298 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 82046 | 82216 | 82046 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 81733 | 81921 | 81733 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 81045 | 81203 | 81045 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 80717 | 80914 | 80717 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 80447 | 80593 | 80447 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 80064 | 80180 | 80064 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | CDS | 79850 | 79975 | 79850 | ID=Msa1366220-mRNA-1:cds;Parent=Msa1366220-mRNA-1 |
| tig0018446 | three_prime_UTR | 79819 | 79849 | 79819 | ID=Msa1366220-mRNA-1:three_prime_utr;Parent=Msa1366220-mRNA-1 |
| tig0018446 | three_prime_UTR | 79583 | 79789 | 79583 | ID=Msa1366220-mRNA-1:three_prime_utr;Parent=Msa1366220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
