Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091560 | XP_013447468.1 | 97.412 | 425 | 10 | 1 | 1 | 425 | 1 | 424 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091560 | sp|Q9M884|MPI1_ARATH | 60.539 | 408 | 158 | 3 | 15 | 422 | 25 | 429 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091560 | A0A072TVL2 | 97.412 | 425 | 10 | 1 | 1 | 425 | 1 | 424 | 0.0 | 857 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657750 | Msa1091560 | 0.803123 | 4.050949e-49 | -8.615850e-47 |
| Msa0681800 | Msa1091560 | 0.802381 | 5.764465e-49 | -8.615850e-47 |
| Msa0828920 | Msa1091560 | 0.818124 | 2.308313e-52 | -8.615850e-47 |
| Msa0140300 | Msa1091560 | 0.809865 | 1.531923e-50 | -8.615850e-47 |
| Msa0402820 | Msa1091560 | 0.824205 | 9.155563e-54 | -8.615850e-47 |
| Msa0432070 | Msa1091560 | 0.808122 | 3.617157e-50 | -8.615850e-47 |
| Msa0439230 | Msa1091560 | 0.881398 | 2.481245e-70 | -8.615850e-47 |
| Msa0453680 | Msa1091560 | 0.803409 | 3.534812e-49 | -8.615850e-47 |
| Msa1012350 | Msa1091560 | 0.859626 | 3.631407e-63 | -8.615850e-47 |
| Msa1012430 | Msa1091560 | 0.919951 | 2.364697e-87 | -8.615850e-47 |
| Msa1060220 | Msa1091560 | 0.806422 | 8.290035e-50 | -8.615850e-47 |
| Msa1091560 | Msa1201120 | 0.811874 | 5.627112e-51 | -8.615850e-47 |
| Msa1091560 | Msa1243420 | 0.819673 | 1.026636e-52 | -8.615850e-47 |
| Msa1091560 | Msa1280560 | 0.818392 | 2.007945e-52 | -8.615850e-47 |
| Msa0281360 | Msa1091560 | 0.809685 | 1.674821e-50 | -8.615850e-47 |
| Msa0311720 | Msa1091560 | 0.804367 | 2.234712e-49 | -8.615850e-47 |
| Msa0974530 | Msa1091560 | 0.800404 | 1.464340e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091560 | MtrunA17_Chr7g0215521 | 97.412 | 425 | 10 | 1 | 1 | 425 | 1 | 424 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091560 | AT3G02570.1 | 60.539 | 408 | 158 | 3 | 15 | 422 | 25 | 429 | 0.0 | 514 |
| Msa1091560 | AT1G67070.1 | 59.005 | 422 | 161 | 5 | 10 | 423 | 22 | 439 | 7.78e-179 | 506 |
| Msa1091560 | AT1G67070.2 | 59.005 | 422 | 161 | 5 | 10 | 423 | 22 | 439 | 7.78e-179 | 506 |
| Msa1091560 | AT1G67070.3 | 60.252 | 317 | 116 | 3 | 10 | 319 | 22 | 335 | 2.43e-131 | 382 |
Find 135 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCTTGGATTTGGTTTA+TGG | 0.064643 | 7_3:-6827577 | Msa1091560:three_prime_UTR |
| TGATCTACCTTTCTTGTTTA+AGG | 0.068324 | 7_3:-6832103 | Msa1091560:intron |
| AAGCTTTCTGAGCTTAATTC+TGG | 0.161202 | 7_3:-6832297 | Msa1091560:CDS |
| GAACCACATGCTTATTTATC+TGG | 0.172307 | 7_3:-6828759 | Msa1091560:CDS |
| AACACCACTGTTTCCCCTTT+TGG | 0.191794 | 7_3:+6827838 | None:intergenic |
| AGTCGGCACATCTATGAATT+TGG | 0.213240 | 7_3:+6828680 | None:intergenic |
| TGGTATTTGAAGAGTATTTA+AGG | 0.222042 | 7_3:+6832489 | None:intergenic |
| AGAGATTGTTGAAATGAAAA+TGG | 0.237559 | 7_3:+6832431 | None:intergenic |
| TGGATTGGTACCCATGATTC+TGG | 0.276246 | 7_3:-6832237 | Msa1091560:CDS |
| GTCATAAAGTTGTTAAGAAA+TGG | 0.285189 | 7_3:-6832131 | Msa1091560:CDS |
| GTGGTGTTCCCGGCTGTTCC+AGG | 0.310385 | 7_3:-6827823 | Msa1091560:CDS |
| TTCGGTGATTTCATAAACTT+TGG | 0.326384 | 7_3:+6827747 | None:intergenic |
| GAAAATTGAGATTGAGTCAT+TGG | 0.333247 | 7_3:+6832469 | None:intergenic |
| TCATAAAGTTGTTAAGAAAT+GGG | 0.342228 | 7_3:-6832130 | Msa1091560:CDS |
| TTCTGTTAAGAATTATGATT+GGG | 0.342527 | 7_3:-6832349 | Msa1091560:CDS |
| AATCAATATCCATCCGATAT+TGG | 0.343564 | 7_3:-6828852 | Msa1091560:CDS |
| TTGTGGATTTATCACTCTTA+AGG | 0.363037 | 7_3:-6831145 | Msa1091560:intron |
| CATCTATGAATTTGGGAGTT+AGG | 0.363872 | 7_3:+6828688 | None:intergenic |
| AGTTCAGCATAAGGCTTCAT+TGG | 0.364086 | 7_3:+6832261 | None:intergenic |
| AAAGGGTTAGTCTTAAAGAT+TGG | 0.368646 | 7_3:-6832182 | Msa1091560:CDS |
| TTTAAGGAAGAGAGAGAAAA+GGG | 0.370739 | 7_3:+6832505 | None:intergenic |
| AGCTGTGATTCATACTGTTC+CGG | 0.380324 | 7_3:-6829736 | Msa1091560:CDS |
| GATAACCCTGATTTGTTGCT+TGG | 0.381000 | 7_3:-6832153 | Msa1091560:CDS |
| TTATGACCAAGCAACAAATC+AGG | 0.382854 | 7_3:+6832147 | None:intergenic |
| TTTCTTGTTTCTGATGATGA+TGG | 0.384063 | 7_3:-6832207 | Msa1091560:CDS |
| ATCCTAGCCAACTCCTTATC+CGG | 0.384149 | 7_3:+6831252 | None:intergenic |
| GGGATATATTTATTTACATA+TGG | 0.387920 | 7_3:+6827898 | None:intergenic |
| GAGATTGTTGAAATGAAAAT+GGG | 0.389157 | 7_3:+6832432 | None:intergenic |
| AGCTGCAATCACACCAATAT+CGG | 0.389579 | 7_3:+6828839 | None:intergenic |
| ATCGTTCGTGCATGAAATTT+CGG | 0.396967 | 7_3:-6832704 | None:intergenic |
| GAAGAGTACTTAGGTAGCTT+AGG | 0.398833 | 7_3:-6827550 | Msa1091560:three_prime_UTR |
| AGGGGAAACAGTGGTGTTCC+CGG | 0.401430 | 7_3:-6827833 | Msa1091560:CDS |
| CCAACTAGGTCGACAACTTC+CGG | 0.401669 | 7_3:+6829717 | None:intergenic |
| GTCGGCACATCTATGAATTT+GGG | 0.403266 | 7_3:+6828681 | None:intergenic |
| AGCTTTCTGAGCTTAATTCT+GGG | 0.415899 | 7_3:-6832296 | Msa1091560:CDS |
| TGAAGCCTTATGCTGAACTT+TGG | 0.417829 | 7_3:-6832257 | Msa1091560:CDS |
| ATTTAAGGAAGAGAGAGAAA+AGG | 0.419665 | 7_3:+6832504 | None:intergenic |
| CTGGTGAAGCATTGTTCCTC+GGG | 0.421661 | 7_3:-6828788 | Msa1091560:CDS |
| TAAATATATCCCGCCATTTG+AGG | 0.424847 | 7_3:-6827887 | Msa1091560:CDS |
| GTTCTGTTAAGAATTATGAT+TGG | 0.430515 | 7_3:-6832350 | Msa1091560:CDS |
| GTGAACACTGCCTGTAGAAC+AGG | 0.432988 | 7_3:+6829633 | None:intergenic |
| GAGTTGCATCTGTACAGAAC+AGG | 0.440421 | 7_3:-6827670 | Msa1091560:CDS |
| CCGGAAGTTGTCGACCTAGT+TGG | 0.441959 | 7_3:-6829717 | Msa1091560:CDS |
| AACCACATGCTTATTTATCT+GGG | 0.445476 | 7_3:-6828758 | Msa1091560:CDS |
| TTGTACTTCATCTCGATTAG+TGG | 0.449353 | 7_3:-6827493 | Msa1091560:three_prime_UTR |
| CATCCTGACGTGTATAAAGA+TGG | 0.451185 | 7_3:-6831216 | Msa1091560:CDS |
| TATACAAGCTCACCCGGATA+AGG | 0.453707 | 7_3:-6831265 | Msa1091560:CDS |
| GAAAAGAAGGACCAGAATCA+TGG | 0.454156 | 7_3:+6832226 | None:intergenic |
| ATCGTTGTATTCTCCCAAAA+GGG | 0.454733 | 7_3:-6827852 | Msa1091560:CDS |
| TCGGTGATTTCATAAACTTT+GGG | 0.454996 | 7_3:+6827748 | None:intergenic |
| AATTATGATTGGGGTTTACC+TGG | 0.458671 | 7_3:-6832339 | Msa1091560:CDS |
| TTCCCATCTTTATACACGTC+AGG | 0.460175 | 7_3:+6831213 | None:intergenic |
| GATTGCAGAAGGAATGGAAA+AGG | 0.460399 | 7_3:+6832541 | None:intergenic |
| GAGAAAGATTGCAGAAGGAA+TGG | 0.461998 | 7_3:+6832535 | None:intergenic |
| GAAGGTTAAACCTGTTCTAC+AGG | 0.462289 | 7_3:-6829643 | Msa1091560:CDS |
| CCTTATGCTGAACTTTGGAT+TGG | 0.462431 | 7_3:-6832252 | Msa1091560:CDS |
| GACACTCCTCGCAGAATCTC+CGG | 0.467539 | 7_3:+6827928 | None:intergenic |
| ATGGACGGACCTGGAACAGC+CGG | 0.468574 | 7_3:+6827814 | None:intergenic |
| GACTCTTAAGCATTCAAAAG+TGG | 0.471259 | 7_3:-6827625 | Msa1091560:exon |
| GTTCTTCTTTCTTACACAAA+GGG | 0.471658 | 7_3:-6832682 | Msa1091560:five_prime_UTR |
| TGGTGCTGCAAATGCAAATC+TGG | 0.472964 | 7_3:-6829697 | Msa1091560:CDS |
| GACGAGGCATTTGACAGAAA+AGG | 0.478932 | 7_3:-6828898 | Msa1091560:CDS |
| TTAGGTGTTGTCTGTGGGGA+AGG | 0.484985 | 7_3:-6831295 | Msa1091560:intron |
| GTCATTGCAAGAGCCATCTC+AGG | 0.487041 | 7_3:+6831183 | None:intergenic |
| TATGAATTTGGGAGTTAGGC+CGG | 0.490147 | 7_3:+6828692 | None:intergenic |
| CCTGGTGAAGCATTGTTCCT+CGG | 0.492483 | 7_3:-6828789 | Msa1091560:CDS |
| CTCTTTCAATCTTCTTACAA+TGG | 0.502557 | 7_3:-6832412 | Msa1091560:exon |
| TCGATCTCGAATTCCTCAAA+TGG | 0.502838 | 7_3:+6827874 | None:intergenic |
| TATGGAAAAGAAGAGTACTT+AGG | 0.503711 | 7_3:-6827559 | Msa1091560:three_prime_UTR |
| GATCGTTGTATTCTCCCAAA+AGG | 0.504887 | 7_3:-6827853 | Msa1091560:CDS |
| TTTACCTGGTCAATTGTCAC+AGG | 0.505143 | 7_3:-6832325 | Msa1091560:CDS |
| CCAATCCAAAGTTCAGCATA+AGG | 0.505779 | 7_3:+6832252 | None:intergenic |
| ACGCTAATCTCTGTGTAAGC+AGG | 0.520732 | 7_3:+6827706 | None:intergenic |
| TCACATACCTTAAACAAGAA+AGG | 0.521871 | 7_3:+6832096 | None:intergenic |
| TCATCAGAAACAAGAAAAGA+AGG | 0.521989 | 7_3:+6832213 | None:intergenic |
| AGCGAAAAGAGCATCACCTT+CGG | 0.522693 | 7_3:+6827729 | None:intergenic |
| CATGTATTAGGTGTTGTCTG+TGG | 0.523002 | 7_3:-6831301 | Msa1091560:intron |
| TGTACTTCATCTCGATTAGT+GGG | 0.523103 | 7_3:-6827492 | Msa1091560:three_prime_UTR |
| TTGCATTTGCAGCACCAACT+AGG | 0.525377 | 7_3:+6829703 | None:intergenic |
| AGAGAGAGAAAGATTGCAGA+AGG | 0.525920 | 7_3:+6832530 | None:intergenic |
| TTCTGATGATGATGGACAAA+GGG | 0.529434 | 7_3:-6832199 | Msa1091560:CDS |
| TTCAAAAGTGGAAGAGCTTG+TGG | 0.529575 | 7_3:-6827613 | Msa1091560:three_prime_UTR |
| TCCTAGCCAACTCCTTATCC+GGG | 0.537323 | 7_3:+6831253 | None:intergenic |
| AACCACGTCAAACTCAATCC+TGG | 0.537535 | 7_3:-6828807 | Msa1091560:CDS |
| TTCCATGCTCACATACAAGC+AGG | 0.540703 | 7_3:-6828652 | Msa1091560:intron |
| TTTGACAGAAAAGGAGCTGT+TGG | 0.543234 | 7_3:-6828889 | Msa1091560:CDS |
| CACCAGGATTGAGTTTGACG+TGG | 0.544937 | 7_3:+6828805 | None:intergenic |
| CCGAGGAACAATGCTTCACC+AGG | 0.545757 | 7_3:+6828789 | None:intergenic |
| TATCAATCTGTTCACAGCAT+CGG | 0.551763 | 7_3:+6829578 | None:intergenic |
| AAGTTTCTGAAGTGAATTGT+GGG | 0.552930 | 7_3:+6832377 | None:intergenic |
| TCTCGAATTCCTCAAATGGC+GGG | 0.554372 | 7_3:+6827878 | None:intergenic |
| TGGGAATCATAAACCTGAGA+TGG | 0.555786 | 7_3:-6831196 | Msa1091560:CDS |
| TGTGTTCATCGATCCTTCCC+CGG | 0.559889 | 7_3:+6827777 | None:intergenic |
| GGAGCTGTTGGTGCTGCGGT+TGG | 0.560413 | 7_3:-6828877 | Msa1091560:CDS |
| TATGACCAAGCAACAAATCA+GGG | 0.561583 | 7_3:+6832148 | None:intergenic |
| ATGTATTAGGTGTTGTCTGT+GGG | 0.562011 | 7_3:-6831300 | Msa1091560:intron |
| AAAAGAAGGACCAGAATCAT+GGG | 0.564262 | 7_3:+6832227 | None:intergenic |
| CATAAAGTTGTTAAGAAATG+GGG | 0.564984 | 7_3:-6832129 | Msa1091560:CDS |
| GGTTCTTCTTTCTTACACAA+AGG | 0.565650 | 7_3:-6832683 | Msa1091560:five_prime_UTR |
| AGCTCACCCGGATAAGGAGT+TGG | 0.573395 | 7_3:-6831259 | Msa1091560:CDS |
| TACCTGCTTGTATGTGAGCA+TGG | 0.575867 | 7_3:+6828650 | None:intergenic |
| TGATCAGAATGGTGAAGAGA+AGG | 0.578017 | 7_3:-6829661 | Msa1091560:CDS |
| TCTGACAATGTTGTACGAGC+CGG | 0.581071 | 7_3:-6828711 | Msa1091560:CDS |
| ATCCTGACGTGTATAAAGAT+GGG | 0.582427 | 7_3:-6831215 | Msa1091560:CDS |
| ACCCGGATAAGGAGTTGGCT+AGG | 0.586382 | 7_3:-6831254 | Msa1091560:CDS |
| AGAAGGAATGGAAAAGGAAA+CGG | 0.594376 | 7_3:+6832547 | None:intergenic |
| GAAGTTTCTGAAGTGAATTG+TGG | 0.595226 | 7_3:+6832376 | None:intergenic |
| ATCTCGAATTCCTCAAATGG+CGG | 0.596472 | 7_3:+6827877 | None:intergenic |
| ATTGATAAATCGACTGCATG+AGG | 0.598903 | 7_3:-6829562 | Msa1091560:CDS |
| TGGACGGACCTGGAACAGCC+GGG | 0.599936 | 7_3:+6827815 | None:intergenic |
| GCAACCTGTGACAATTGACC+AGG | 0.605256 | 7_3:+6832321 | None:intergenic |
| GCAATCACACCAATATCGGA+TGG | 0.607190 | 7_3:+6828843 | None:intergenic |
| TTATCTAATCTTGTTGAACA+CGG | 0.613308 | 7_3:+6832642 | None:intergenic |
| TGTTCTGTACAGATGCAACT+CGG | 0.623652 | 7_3:+6827672 | None:intergenic |
| TCTGTTAAGAATTATGATTG+GGG | 0.625509 | 7_3:-6832348 | Msa1091560:CDS |
| TGGGGAGTGTATTGAATGCA+TGG | 0.626613 | 7_3:-6828739 | Msa1091560:CDS |
| TCGACTGCATGAGGAAAGTG+AGG | 0.627796 | 7_3:-6829553 | Msa1091560:intron |
| TTTGTCTATACAAGCTCACC+CGG | 0.636069 | 7_3:-6831271 | Msa1091560:CDS |
| ACCACATGCTTATTTATCTG+GGG | 0.636694 | 7_3:-6828757 | Msa1091560:CDS |
| TTTCTGATGATGATGGACAA+AGG | 0.639421 | 7_3:-6832200 | Msa1091560:CDS |
| AAAGTTTATGAAATCACCGA+AGG | 0.643879 | 7_3:-6827745 | Msa1091560:CDS |
| AAAAGGAGCTGTTGGTGCTG+CGG | 0.645246 | 7_3:-6828881 | Msa1091560:CDS |
| TCGTTGTATTCTCCCAAAAG+GGG | 0.650658 | 7_3:-6827851 | Msa1091560:CDS |
| AGTTGCATCTGTACAGAACA+GGG | 0.662530 | 7_3:-6827669 | Msa1091560:CDS |
| TTAGAAACTAGTGATCAGAA+TGG | 0.664033 | 7_3:-6829672 | Msa1091560:CDS |
| GTGAGCATGGAACAAAGAGT+CGG | 0.664307 | 7_3:+6828663 | None:intergenic |
| GGGGAAGGATCGATGAACAC+AGG | 0.664529 | 7_3:-6827775 | Msa1091560:CDS |
| TCCCCAGATAAATAAGCATG+TGG | 0.674499 | 7_3:+6828756 | None:intergenic |
| TCTCCCAAAAGGGGAAACAG+TGG | 0.677647 | 7_3:-6827842 | Msa1091560:CDS |
| AGGAATGGAAAAGGAAACGG+TGG | 0.681439 | 7_3:+6832550 | None:intergenic |
| CATGTGGTTCATTCGCCCCG+AGG | 0.686781 | 7_3:+6828772 | None:intergenic |
| TGTATTAGGTGTTGTCTGTG+GGG | 0.689099 | 7_3:-6831299 | Msa1091560:intron |
| AAAAGTGGAAGAGCTTGTGG+AGG | 0.693518 | 7_3:-6827610 | Msa1091560:three_prime_UTR |
| AGTTTCTGAAGTGAATTGTG+GGG | 0.698513 | 7_3:+6832378 | None:intergenic |
| TGGTGAAGCATTGTTCCTCG+GGG | 0.705943 | 7_3:-6828787 | Msa1091560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTAATGTTTTTTGT+TGG | - | chr7_3:6827923-6827942 | Msa1091560:CDS | 10.0% |
| !!! | TTATTTATTTTTGTTTAAAG+GGG | - | chr7_3:6828615-6828634 | Msa1091560:intron | 10.0% |
| !!! | ACAAAAATTATTTATTTTCT+TGG | + | chr7_3:6829621-6829640 | None:intergenic | 10.0% |
| !!! | ATTAGTATAAGTTGAAAATT+AGG | - | chr7_3:6829052-6829071 | Msa1091560:intron | 15.0% |
| !!! | TTGTTATTAAGTAAAATATG+TGG | - | chr7_3:6829442-6829461 | Msa1091560:intron | 15.0% |
| !!! | TTTTCTGTTTTTTTCTATTT+AGG | - | chr7_3:6830215-6830234 | Msa1091560:intron | 15.0% |
| !! | ATTCTAATAATTGAACTTTA+GGG | + | chr7_3:6831630-6831649 | None:intergenic | 15.0% |
| !! | AATTCTAATAATTGAACTTT+AGG | + | chr7_3:6831631-6831650 | None:intergenic | 15.0% |
| !! | TTCTGTTAAGAATTATGATT+GGG | - | chr7_3:6827632-6827651 | Msa1091560:exon | 20.0% |
| !! | TCATAAAGTTGTTAAGAAAT+GGG | - | chr7_3:6827851-6827870 | Msa1091560:CDS | 20.0% |
| !!! | GTTGTTTAGATTTTATGAAA+AGG | - | chr7_3:6828141-6828160 | Msa1091560:intron | 20.0% |
| !!! | AGTGTTTAGTTTTATGAAAA+AGG | - | chr7_3:6828394-6828413 | Msa1091560:intron | 20.0% |
| !!! | TATGTTGTTTATCATGTATT+AGG | - | chr7_3:6828668-6828687 | Msa1091560:CDS | 20.0% |
| !! | TGTAACTCTTTATTAATTGT+TGG | + | chr7_3:6829369-6829388 | None:intergenic | 20.0% |
| !!! | TTATTACAGATCTTTTTGTT+TGG | - | chr7_3:6829480-6829499 | Msa1091560:intron | 20.0% |
| !!! | TTTGAGAATAAGTTTTTCTT+CGG | - | chr7_3:6829526-6829545 | Msa1091560:intron | 20.0% |
| !! | ATGCAATAAGAAATAGTTAA+GGG | + | chr7_3:6829681-6829700 | None:intergenic | 20.0% |
| !! | AATGCAATAAGAAATAGTTA+AGG | + | chr7_3:6829682-6829701 | None:intergenic | 20.0% |
| !! | TTTCTGCTATAAATAGTTAA+GGG | - | chr7_3:6829715-6829734 | Msa1091560:CDS | 20.0% |
| !! | ATTTAGTTAACTCAAAAGTT+CGG | - | chr7_3:6829896-6829915 | Msa1091560:intron | 20.0% |
| !!! | ATTTTAATACTGCTTTTTGT+CGG | - | chr7_3:6829965-6829984 | Msa1091560:intron | 20.0% |
| !!! | TTATTCTACAAGTAAGATTT+TGG | + | chr7_3:6830117-6830136 | None:intergenic | 20.0% |
| !! | AAAATCTTACTTGTAGAATA+AGG | - | chr7_3:6830116-6830135 | Msa1091560:intron | 20.0% |
| !! | TACAATAAATCAGTAAAAGA+TGG | + | chr7_3:6830168-6830187 | None:intergenic | 20.0% |
| !! | TTATTGTAATGTTATTCTCT+TGG | - | chr7_3:6830180-6830199 | Msa1091560:intron | 20.0% |
| !! | ATAATATCCAACTAACTTAA+TGG | + | chr7_3:6830572-6830591 | None:intergenic | 20.0% |
| !! | ATAAGCACTTATATGATAAA+CGG | + | chr7_3:6830718-6830737 | None:intergenic | 20.0% |
| !!! | ACTTTTATAACATACATCAA+TGG | - | chr7_3:6831385-6831404 | Msa1091560:intron | 20.0% |
| !!! | TTAAGTTGTTTATCCAAATA+AGG | + | chr7_3:6831411-6831430 | None:intergenic | 20.0% |
| !! | GATTAAACACATATTTATCA+TGG | - | chr7_3:6831918-6831937 | Msa1091560:intron | 20.0% |
| !! | GGGATATATTTATTTACATA+TGG | + | chr7_3:6832086-6832105 | None:intergenic | 20.0% |
| !! | AGGAAATAAAAAGAAATTCT+TGG | - | chr7_3:6832391-6832410 | Msa1091560:CDS | 20.0% |
| !! | TAAAAAGAAATTCTTGGATT+TGG | - | chr7_3:6832397-6832416 | Msa1091560:exon | 20.0% |
| !!! | TATAATTTTATTCGCAAACA+TGG | + | chr7_3:6832538-6832557 | None:intergenic | 20.0% |
| ! | TTATCTAATCTTGTTGAACA+CGG | + | chr7_3:6827342-6827361 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGGATTCTTGTTT+GGG | + | chr7_3:6827368-6827387 | None:intergenic | 25.0% |
| !!! | TGAAGATAATCACTTTTTTG+TGG | + | chr7_3:6827381-6827400 | None:intergenic | 25.0% |
| !!! | TGGTATTTGAAGAGTATTTA+AGG | + | chr7_3:6827495-6827514 | None:intergenic | 25.0% |
| ! | GAGATTGTTGAAATGAAAAT+GGG | + | chr7_3:6827552-6827571 | None:intergenic | 25.0% |
| ! | AGAGATTGTTGAAATGAAAA+TGG | + | chr7_3:6827553-6827572 | None:intergenic | 25.0% |
| ! | GTTCTGTTAAGAATTATGAT+TGG | - | chr7_3:6827631-6827650 | Msa1091560:exon | 25.0% |
| ! | TCTGTTAAGAATTATGATTG+GGG | - | chr7_3:6827633-6827652 | Msa1091560:exon | 25.0% |
| ! | GTCATAAAGTTGTTAAGAAA+TGG | - | chr7_3:6827850-6827869 | Msa1091560:CDS | 25.0% |
| ! | CATAAAGTTGTTAAGAAATG+GGG | - | chr7_3:6827852-6827871 | Msa1091560:CDS | 25.0% |
| !! | TTTGTTGGTTACTATGTAAT+TGG | - | chr7_3:6827938-6827957 | Msa1091560:intron | 25.0% |
| ! | AATTGGTGTGAAATATTCAT+TGG | - | chr7_3:6827955-6827974 | Msa1091560:intron | 25.0% |
| ! | TTAAGTAAGAGAAAACATGT+TGG | + | chr7_3:6828051-6828070 | None:intergenic | 25.0% |
| !! | AACATGTTTTCTCTTACTTA+AGG | - | chr7_3:6828050-6828069 | Msa1091560:intron | 25.0% |
| !! | ACATGTTTTCTCTTACTTAA+GGG | - | chr7_3:6828051-6828070 | Msa1091560:intron | 25.0% |
| !!! | GGTGTCTATATTTTAAGAAT+AGG | - | chr7_3:6828636-6828655 | Msa1091560:intron | 25.0% |
| ! | GGTAGTATTTAATTATTCTG+TGG | - | chr7_3:6828857-6828876 | Msa1091560:CDS | 25.0% |
| !! | AGTATAAGTTGAAAATTAGG+TGG | - | chr7_3:6829055-6829074 | Msa1091560:intron | 25.0% |
| !! | AATTTGAAATGATAACCCTT+TGG | - | chr7_3:6829401-6829420 | Msa1091560:intron | 25.0% |
| !! | TTGAGAATAAGTTTTTCTTC+GGG | - | chr7_3:6829527-6829546 | Msa1091560:intron | 25.0% |
| ! | CATTAAAACGACAACTAAAA+AGG | + | chr7_3:6829585-6829604 | None:intergenic | 25.0% |
| ! | CTTTCTGCTATAAATAGTTA+AGG | - | chr7_3:6829714-6829733 | Msa1091560:CDS | 25.0% |
| !! | AGTTGATTAGTTAATCTGTT+TGG | - | chr7_3:6830453-6830472 | Msa1091560:intron | 25.0% |
| ! | AACTAACTTAATGGAACAAA+CGG | + | chr7_3:6830563-6830582 | None:intergenic | 25.0% |
| ! | GATGTATGTTATAAAAGTTG+CGG | + | chr7_3:6831383-6831402 | None:intergenic | 25.0% |
| ! | TCAAATCTTAAAACCACATA+TGG | - | chr7_3:6831503-6831522 | Msa1091560:intron | 25.0% |
| !!! | TAATAATTGAACTTTAGGGT+CGG | + | chr7_3:6831626-6831645 | None:intergenic | 25.0% |
| !! | AAGACTGAAATAAGTTCTAA+CGG | + | chr7_3:6831656-6831675 | None:intergenic | 25.0% |
| ! | TCTTCCTTTGAATTTCATAT+TGG | - | chr7_3:6831711-6831730 | Msa1091560:intron | 25.0% |
| ! | ATGACCAATATGAAATTCAA+AGG | + | chr7_3:6831718-6831737 | None:intergenic | 25.0% |
| ! | TTTGAATTTCATATTGGTCA+TGG | - | chr7_3:6831717-6831736 | Msa1091560:intron | 25.0% |
| ! | GATTCATCTTTATTGAGATT+TGG | - | chr7_3:6831739-6831758 | Msa1091560:intron | 25.0% |
| ! | ATGCAAAAAAACAGAACAAA+AGG | + | chr7_3:6831767-6831786 | None:intergenic | 25.0% |
| ! | TGTGATATTAACTCAATTGT+AGG | - | chr7_3:6831847-6831866 | Msa1091560:intron | 25.0% |
| ! | ATGCATAACCATATACTATT+GGG | - | chr7_3:6831877-6831896 | Msa1091560:intron | 25.0% |
| !!! | TCTTTGAAATGAATCGTAAT+AGG | - | chr7_3:6831967-6831986 | Msa1091560:intron | 25.0% |
| !!! | TTATTCTCTTATTTTCTCAC+AGG | - | chr7_3:6832025-6832044 | Msa1091560:intron | 25.0% |
| !!! | TATTCTCTTATTTTCTCACA+GGG | - | chr7_3:6832026-6832045 | Msa1091560:intron | 25.0% |
| !! | AAATTCTTGGATTTGGTTTA+TGG | - | chr7_3:6832404-6832423 | Msa1091560:exon | 25.0% |
| GTTCTTCTTTCTTACACAAA+GGG | - | chr7_3:6827299-6827318 | Msa1091560:three_prime_UTR | 30.0% | |
| !!! | CTTTTTTGTGGATTCTTGTT+TGG | + | chr7_3:6827369-6827388 | None:intergenic | 30.0% |
| TTTAAGGAAGAGAGAGAAAA+GGG | + | chr7_3:6827479-6827498 | None:intergenic | 30.0% | |
| ATTTAAGGAAGAGAGAGAAA+AGG | + | chr7_3:6827480-6827499 | None:intergenic | 30.0% | |
| GAAAATTGAGATTGAGTCAT+TGG | + | chr7_3:6827515-6827534 | None:intergenic | 30.0% | |
| CTCTTTCAATCTTCTTACAA+TGG | - | chr7_3:6827569-6827588 | Msa1091560:three_prime_UTR | 30.0% | |
| !! | AAGTTTCTGAAGTGAATTGT+GGG | + | chr7_3:6827607-6827626 | None:intergenic | 30.0% |
| TCATCAGAAACAAGAAAAGA+AGG | + | chr7_3:6827771-6827790 | None:intergenic | 30.0% | |
| !! | TTTCTTGTTTCTGATGATGA+TGG | - | chr7_3:6827774-6827793 | Msa1091560:CDS | 30.0% |
| !! | AAAGGGTTAGTCTTAAAGAT+TGG | - | chr7_3:6827799-6827818 | Msa1091560:CDS | 30.0% |
| ! | TGATCTACCTTTCTTGTTTA+AGG | - | chr7_3:6827878-6827897 | Msa1091560:CDS | 30.0% |
| TCACATACCTTAAACAAGAA+AGG | + | chr7_3:6827888-6827907 | None:intergenic | 30.0% | |
| !! | TGTTGATAACTAATCTGTGT+CGG | - | chr7_3:6827981-6828000 | Msa1091560:intron | 30.0% |
| GTTTACACAAAGAAAACCAA+GGG | + | chr7_3:6828373-6828392 | None:intergenic | 30.0% | |
| TGTTTACACAAAGAAAACCA+AGG | + | chr7_3:6828374-6828393 | None:intergenic | 30.0% | |
| TTGTTAGACAAGAACAAACA+CGG | + | chr7_3:6828474-6828493 | None:intergenic | 30.0% | |
| TTGTGGATTTATCACTCTTA+AGG | - | chr7_3:6828836-6828855 | Msa1091560:CDS | 30.0% | |
| TATTATGAGAGTAACTGAAC+TGG | - | chr7_3:6828922-6828941 | Msa1091560:intron | 30.0% | |
| TCAATACTCATTAGTGTGAT+TGG | - | chr7_3:6829193-6829212 | Msa1091560:intron | 30.0% | |
| AAGGAATTATACCTAACAGA+TGG | + | chr7_3:6829225-6829244 | None:intergenic | 30.0% | |
| GGTTGTATTGCATTAGAAAA+AGG | + | chr7_3:6829333-6829352 | None:intergenic | 30.0% | |
| ! | ATTGTTGGTTAGAATATCAC+AGG | + | chr7_3:6829354-6829373 | None:intergenic | 30.0% |
| TCAAAGACAGAACTTCAATT+TGG | + | chr7_3:6829511-6829530 | None:intergenic | 30.0% | |
| ! | TGAGAATAAGTTTTTCTTCG+GGG | - | chr7_3:6829528-6829547 | Msa1091560:intron | 30.0% |
| AAACGCAAATAAAGCGAAAT+AGG | - | chr7_3:6829780-6829799 | Msa1091560:intron | 30.0% | |
| TACCTAAACAACTGCTAAAA+AGG | - | chr7_3:6829810-6829829 | Msa1091560:intron | 30.0% | |
| !! | TTCCTTTTTAGCAGTTGTTT+AGG | + | chr7_3:6829815-6829834 | None:intergenic | 30.0% |
| AACTGCTAAAAAGGAACATA+GGG | - | chr7_3:6829819-6829838 | Msa1091560:intron | 30.0% | |
| ATGACGTGTCTTATGTATTT+AGG | - | chr7_3:6829867-6829886 | Msa1091560:intron | 30.0% | |
| TGACGTGTCTTATGTATTTA+GGG | - | chr7_3:6829868-6829887 | Msa1091560:intron | 30.0% | |
| TAACTCAAAAGTTCGGATTT+CGG | - | chr7_3:6829903-6829922 | Msa1091560:intron | 30.0% | |
| AAGATGGTTGAATATACCAA+AGG | + | chr7_3:6830152-6830171 | None:intergenic | 30.0% | |
| TTAGAAACTAGTGATCAGAA+TGG | - | chr7_3:6830309-6830328 | Msa1091560:intron | 30.0% | |
| GTTTGTTCCATTAAGTTAGT+TGG | - | chr7_3:6830562-6830581 | Msa1091560:intron | 30.0% | |
| ! | ATGGATCAAAAATTTTGCAG+AGG | - | chr7_3:6830628-6830647 | Msa1091560:intron | 30.0% |
| GATTTGATATATGTGGTCTT+GGG | - | chr7_3:6830650-6830669 | Msa1091560:intron | 30.0% | |
| TTAAGTCGTTTAACCAAACA+AGG | + | chr7_3:6830676-6830695 | None:intergenic | 30.0% | |
| TTAGGGTCACATGATATTTA+TGG | - | chr7_3:6830940-6830959 | Msa1091560:intron | 30.0% | |
| GATGCAAGATAAGAATATCA+AGG | + | chr7_3:6831062-6831081 | None:intergenic | 30.0% | |
| AATCAATATCCATCCGATAT+TGG | - | chr7_3:6831129-6831148 | Msa1091560:intron | 30.0% | |
| AACCACATGCTTATTTATCT+GGG | - | chr7_3:6831223-6831242 | Msa1091560:CDS | 30.0% | |
| CATGCATAACCATATACTAT+TGG | - | chr7_3:6831876-6831895 | Msa1091560:intron | 30.0% | |
| TCATGGTTTCAAAATTTCGA+CGG | - | chr7_3:6831935-6831954 | Msa1091560:intron | 30.0% | |
| TCGGTGATTTCATAAACTTT+GGG | + | chr7_3:6832236-6832255 | None:intergenic | 30.0% | |
| TTCGGTGATTTCATAAACTT+TGG | + | chr7_3:6832237-6832256 | None:intergenic | 30.0% | |
| AAAGTTTATGAAATCACCGA+AGG | - | chr7_3:6832236-6832255 | Msa1091560:CDS | 30.0% | |
| !! | TATGGAAAAGAAGAGTACTT+AGG | - | chr7_3:6832422-6832441 | Msa1091560:five_prime_UTR | 30.0% |
| ! | AACATGGAAAAAAGTGCAAA+TGG | + | chr7_3:6832522-6832541 | None:intergenic | 30.0% |
| GGTTCTTCTTTCTTACACAA+AGG | - | chr7_3:6827298-6827317 | Msa1091560:three_prime_UTR | 35.0% | |
| AGAAGGAATGGAAAAGGAAA+CGG | + | chr7_3:6827437-6827456 | None:intergenic | 35.0% | |
| !! | AGTTTCTGAAGTGAATTGTG+GGG | + | chr7_3:6827606-6827625 | None:intergenic | 35.0% |
| !! | GAAGTTTCTGAAGTGAATTG+TGG | + | chr7_3:6827608-6827627 | None:intergenic | 35.0% |
| AATTATGATTGGGGTTTACC+TGG | - | chr7_3:6827642-6827661 | Msa1091560:CDS | 35.0% | |
| AAGCTTTCTGAGCTTAATTC+TGG | - | chr7_3:6827684-6827703 | Msa1091560:CDS | 35.0% | |
| AGCTTTCTGAGCTTAATTCT+GGG | - | chr7_3:6827685-6827704 | Msa1091560:CDS | 35.0% | |
| AAAAGAAGGACCAGAATCAT+GGG | + | chr7_3:6827757-6827776 | None:intergenic | 35.0% | |
| !! | TTTCTGATGATGATGGACAA+AGG | - | chr7_3:6827781-6827800 | Msa1091560:CDS | 35.0% |
| !! | TTCTGATGATGATGGACAAA+GGG | - | chr7_3:6827782-6827801 | Msa1091560:CDS | 35.0% |
| TATGACCAAGCAACAAATCA+GGG | + | chr7_3:6827836-6827855 | None:intergenic | 35.0% | |
| TTATGACCAAGCAACAAATC+AGG | + | chr7_3:6827837-6827856 | None:intergenic | 35.0% | |
| ACATAAACATGGTGTTTGTC+AGG | + | chr7_3:6828011-6828030 | None:intergenic | 35.0% | |
| ACAAACACCATGTTTATGTC+TGG | - | chr7_3:6828012-6828031 | Msa1091560:intron | 35.0% | |
| CAAACACCATGTTTATGTCT+GGG | - | chr7_3:6828013-6828032 | Msa1091560:intron | 35.0% | |
| AAACACCATGTTTATGTCTG+GGG | - | chr7_3:6828014-6828033 | Msa1091560:intron | 35.0% | |
| AACACGATACTTGAGATTGA+AGG | - | chr7_3:6828443-6828462 | Msa1091560:intron | 35.0% | |
| ! | TGTTTGTATCGATGCTTCAT+AGG | - | chr7_3:6828572-6828591 | Msa1091560:intron | 35.0% |
| ! | ATGTATTAGGTGTTGTCTGT+GGG | - | chr7_3:6828681-6828700 | Msa1091560:CDS | 35.0% |
| ATCCTGACGTGTATAAAGAT+GGG | - | chr7_3:6828766-6828785 | Msa1091560:CDS | 35.0% | |
| ! | TCTTGCAATGACAGATTTTG+AGG | - | chr7_3:6828809-6828828 | Msa1091560:CDS | 35.0% |
| TTCACTCAGTCACATCATTA+AGG | + | chr7_3:6829244-6829263 | None:intergenic | 35.0% | |
| GTTGCTTCATTAACTCCAAA+GGG | + | chr7_3:6829419-6829438 | None:intergenic | 35.0% | |
| AGTTGCTTCATTAACTCCAA+AGG | + | chr7_3:6829420-6829439 | None:intergenic | 35.0% | |
| ! | GAGAATAAGTTTTTCTTCGG+GGG | - | chr7_3:6829529-6829548 | Msa1091560:intron | 35.0% |
| ! | ATTTTCTTGGCACACGTAAA+TGG | + | chr7_3:6829608-6829627 | None:intergenic | 35.0% |
| ATAGCAGAAAGAGAGATATG+CGG | + | chr7_3:6829705-6829724 | None:intergenic | 35.0% | |
| CAACTGCTAAAAAGGAACAT+AGG | - | chr7_3:6829818-6829837 | Msa1091560:intron | 35.0% | |
| AGAATGACAGAAATGAACCA+TGG | + | chr7_3:6829935-6829954 | None:intergenic | 35.0% | |
| GCAGTATTAAAATCTCGTCT+TGG | + | chr7_3:6829958-6829977 | None:intergenic | 35.0% | |
| !!! | TAATACTGCTTTTTGTCGGT+TGG | - | chr7_3:6829969-6829988 | Msa1091560:intron | 35.0% |
| GTTGCTTAAACAGTCTTTCT+TGG | - | chr7_3:6830041-6830060 | Msa1091560:intron | 35.0% | |
| ATAAGGTTAGAGCTTACCTT+TGG | - | chr7_3:6830133-6830152 | Msa1091560:intron | 35.0% | |
| TATCAATCTGTTCACAGCAT+CGG | + | chr7_3:6830406-6830425 | None:intergenic | 35.0% | |
| ATTGATAAATCGACTGCATG+AGG | - | chr7_3:6830419-6830438 | Msa1091560:intron | 35.0% | |
| !!! | CTGTTTGGTTTTGATGAGTT+TGG | - | chr7_3:6830468-6830487 | Msa1091560:intron | 35.0% |
| TTATACACTCATTGCGAACA+TGG | - | chr7_3:6830588-6830607 | Msa1091560:intron | 35.0% | |
| TGCAGAGGATTTGATATATG+TGG | - | chr7_3:6830643-6830662 | Msa1091560:intron | 35.0% | |
| GGATTTGATATATGTGGTCT+TGG | - | chr7_3:6830649-6830668 | Msa1091560:intron | 35.0% | |
| TCAGATAAGCCAATATGAAC+AGG | - | chr7_3:6830903-6830922 | Msa1091560:intron | 35.0% | |
| TGACCCTAAGAACATGTTTA+GGG | + | chr7_3:6830929-6830948 | None:intergenic | 35.0% | |
| GAACCACATGCTTATTTATC+TGG | - | chr7_3:6831222-6831241 | Msa1091560:CDS | 35.0% | |
| ACCACATGCTTATTTATCTG+GGG | - | chr7_3:6831224-6831243 | Msa1091560:CDS | 35.0% | |
| CATCTATGAATTTGGGAGTT+AGG | + | chr7_3:6831296-6831315 | None:intergenic | 35.0% | |
| !! | CATACATCAATGGCCTTATT+TGG | - | chr7_3:6831395-6831414 | Msa1091560:intron | 35.0% |
| TACACCTGATTACTATGCTA+AGG | - | chr7_3:6831675-6831694 | Msa1091560:intron | 35.0% | |
| TGTTCATGCCCAATAGTATA+TGG | + | chr7_3:6831888-6831907 | None:intergenic | 35.0% | |
| CAAAATTTCGACGGAATACA+TGG | - | chr7_3:6831944-6831963 | Msa1091560:intron | 35.0% | |
| ! | TATTTTCTCACAGGGTTTTC+CGG | - | chr7_3:6832034-6832053 | Msa1091560:intron | 35.0% |
| TAAATATATCCCGCCATTTG+AGG | - | chr7_3:6832094-6832113 | Msa1091560:intron | 35.0% | |
| ATCGTTGTATTCTCCCAAAA+GGG | - | chr7_3:6832129-6832148 | Msa1091560:CDS | 35.0% | |
| GACTCTTAAGCATTCAAAAG+TGG | - | chr7_3:6832356-6832375 | Msa1091560:CDS | 35.0% | |
| !!! | TAGGTAGTTTTCGAGTTCTT+TGG | - | chr7_3:6832450-6832469 | Msa1091560:five_prime_UTR | 35.0% |
| !!! | TAGTTTTCGAGTTCTTTGGT+GGG | - | chr7_3:6832454-6832473 | Msa1091560:five_prime_UTR | 35.0% |
| TTGTACTTCATCTCGATTAG+TGG | - | chr7_3:6832488-6832507 | Msa1091560:five_prime_UTR | 35.0% | |
| TGTACTTCATCTCGATTAGT+GGG | - | chr7_3:6832489-6832508 | Msa1091560:five_prime_UTR | 35.0% | |
| GATTGCAGAAGGAATGGAAA+AGG | + | chr7_3:6827443-6827462 | None:intergenic | 40.0% | |
| GAGAAAGATTGCAGAAGGAA+TGG | + | chr7_3:6827449-6827468 | None:intergenic | 40.0% | |
| AGAGAGAGAAAGATTGCAGA+AGG | + | chr7_3:6827454-6827473 | None:intergenic | 40.0% | |
| TTTACCTGGTCAATTGTCAC+AGG | - | chr7_3:6827656-6827675 | Msa1091560:CDS | 40.0% | |
| AGTTCAGCATAAGGCTTCAT+TGG | + | chr7_3:6827723-6827742 | None:intergenic | 40.0% | |
| ! | TGAAGCCTTATGCTGAACTT+TGG | - | chr7_3:6827724-6827743 | Msa1091560:CDS | 40.0% |
| CCAATCCAAAGTTCAGCATA+AGG | + | chr7_3:6827732-6827751 | None:intergenic | 40.0% | |
| CCTTATGCTGAACTTTGGAT+TGG | - | chr7_3:6827729-6827748 | Msa1091560:CDS | 40.0% | |
| GAAAAGAAGGACCAGAATCA+TGG | + | chr7_3:6827758-6827777 | None:intergenic | 40.0% | |
| !! | GATAACCCTGATTTGTTGCT+TGG | - | chr7_3:6827828-6827847 | Msa1091560:CDS | 40.0% |
| TGTTCAGACCAATGTGATGT+TGG | - | chr7_3:6828089-6828108 | Msa1091560:intron | 40.0% | |
| CTATGTAACACCGATACTTG+AGG | - | chr7_3:6828184-6828203 | Msa1091560:intron | 40.0% | |
| ! | CATGTATTAGGTGTTGTCTG+TGG | - | chr7_3:6828680-6828699 | Msa1091560:CDS | 40.0% |
| ! | TGTATTAGGTGTTGTCTGTG+GGG | - | chr7_3:6828682-6828701 | Msa1091560:CDS | 40.0% |
| TTTGTCTATACAAGCTCACC+CGG | - | chr7_3:6828710-6828729 | Msa1091560:CDS | 40.0% | |
| CATCCTGACGTGTATAAAGA+TGG | - | chr7_3:6828765-6828784 | Msa1091560:CDS | 40.0% | |
| TTCCCATCTTTATACACGTC+AGG | + | chr7_3:6828771-6828790 | None:intergenic | 40.0% | |
| TGGGAATCATAAACCTGAGA+TGG | - | chr7_3:6828785-6828804 | Msa1091560:CDS | 40.0% | |
| !!! | ACAGATTTTGAGGCTCTTTG+TGG | - | chr7_3:6828819-6828838 | Msa1091560:CDS | 40.0% |
| ATTGGAACTGTCCATCTGTT+AGG | - | chr7_3:6829211-6829230 | Msa1091560:intron | 40.0% | |
| CATGTCAATCTCATTCTCTC+TGG | - | chr7_3:6829294-6829313 | Msa1091560:intron | 40.0% | |
| AGGAACAGAGAGAGTAACAA+CGG | + | chr7_3:6829565-6829584 | None:intergenic | 40.0% | |
| ATAAGACACGTCATGTAGAG+AGG | + | chr7_3:6829861-6829880 | None:intergenic | 40.0% | |
| AAAAGTTCGGATTTCGGTCT+TGG | - | chr7_3:6829909-6829928 | Msa1091560:intron | 40.0% | |
| AGCTGTGATTCATACTGTTC+CGG | - | chr7_3:6830245-6830264 | Msa1091560:intron | 40.0% | |
| TGATCAGAATGGTGAAGAGA+AGG | - | chr7_3:6830320-6830339 | Msa1091560:intron | 40.0% | |
| GAAGGTTAAACCTGTTCTAC+AGG | - | chr7_3:6830338-6830357 | Msa1091560:intron | 40.0% | |
| ! | TGTTTAGGGCCTGTTCATAT+TGG | + | chr7_3:6830915-6830934 | None:intergenic | 40.0% |
| AGGCCCTAAACATGTTCTTA+GGG | - | chr7_3:6830923-6830942 | Msa1091560:intron | 40.0% | |
| GTGACCCTAAGAACATGTTT+AGG | + | chr7_3:6830930-6830949 | None:intergenic | 40.0% | |
| TTCTTATCTTGCATCAGACG+AGG | - | chr7_3:6831067-6831086 | Msa1091560:intron | 40.0% | |
| TTTGACAGAAAAGGAGCTGT+TGG | - | chr7_3:6831092-6831111 | Msa1091560:intron | 40.0% | |
| AGCTGCAATCACACCAATAT+CGG | + | chr7_3:6831145-6831164 | None:intergenic | 40.0% | |
| TCCCCAGATAAATAAGCATG+TGG | + | chr7_3:6831228-6831247 | None:intergenic | 40.0% | |
| TATGAATTTGGGAGTTAGGC+CGG | + | chr7_3:6831292-6831311 | None:intergenic | 40.0% | |
| GTCGGCACATCTATGAATTT+GGG | + | chr7_3:6831303-6831322 | None:intergenic | 40.0% | |
| AGTCGGCACATCTATGAATT+TGG | + | chr7_3:6831304-6831323 | None:intergenic | 40.0% | |
| CATGCCTTAGCATAGTAATC+AGG | + | chr7_3:6831682-6831701 | None:intergenic | 40.0% | |
| AACCAACCAAGCAATCTATG+TGG | + | chr7_3:6831806-6831825 | None:intergenic | 40.0% | |
| ACATAGATTGCTTGGTTGGT+TGG | - | chr7_3:6831805-6831824 | Msa1091560:intron | 40.0% | |
| TAGGTTGCATTCGCTAAACT+CGG | - | chr7_3:6831986-6832005 | Msa1091560:intron | 40.0% | |
| ATCTCGAATTCCTCAAATGG+CGG | + | chr7_3:6832107-6832126 | None:intergenic | 40.0% | |
| TCGATCTCGAATTCCTCAAA+TGG | + | chr7_3:6832110-6832129 | None:intergenic | 40.0% | |
| GATCGTTGTATTCTCCCAAA+AGG | - | chr7_3:6832128-6832147 | Msa1091560:CDS | 40.0% | |
| TCGTTGTATTCTCCCAAAAG+GGG | - | chr7_3:6832130-6832149 | Msa1091560:CDS | 40.0% | |
| TGTTCTGTACAGATGCAACT+CGG | + | chr7_3:6832312-6832331 | None:intergenic | 40.0% | |
| AGTTGCATCTGTACAGAACA+GGG | - | chr7_3:6832312-6832331 | Msa1091560:CDS | 40.0% | |
| TTCAAAAGTGGAAGAGCTTG+TGG | - | chr7_3:6832368-6832387 | Msa1091560:CDS | 40.0% | |
| !! | GAAGAGTACTTAGGTAGCTT+AGG | - | chr7_3:6832431-6832450 | Msa1091560:five_prime_UTR | 40.0% |
| !!! | GTAGTTTTCGAGTTCTTTGG+TGG | - | chr7_3:6832453-6832472 | Msa1091560:five_prime_UTR | 40.0% |
| AGGAATGGAAAAGGAAACGG+TGG | + | chr7_3:6827434-6827453 | None:intergenic | 45.0% | |
| !! | TGGATTGGTACCCATGATTC+TGG | - | chr7_3:6827744-6827763 | Msa1091560:CDS | 45.0% |
| AGACTCCCCAGACATAAACA+TGG | + | chr7_3:6828022-6828041 | None:intergenic | 45.0% | |
| !! | AAGGGCATCCAACATCACAT+TGG | + | chr7_3:6828100-6828119 | None:intergenic | 45.0% |
| ACACCGATACTTGAGGTTGA+AGG | - | chr7_3:6828191-6828210 | Msa1091560:intron | 45.0% | |
| ACGCCTTCAACCTCAAGTAT+CGG | + | chr7_3:6828197-6828216 | None:intergenic | 45.0% | |
| CTGTCTAACATGTGCGTTGT+TGG | - | chr7_3:6828233-6828252 | Msa1091560:intron | 45.0% | |
| CACACATGTCAGCATTGTGT+CGG | + | chr7_3:6828262-6828281 | None:intergenic | 45.0% | |
| TGTGTCCGTGCTTCTTATGA+TGG | - | chr7_3:6828341-6828360 | Msa1091560:intron | 45.0% | |
| GTGTCCGTGCTTCTTATGAT+GGG | - | chr7_3:6828342-6828361 | Msa1091560:intron | 45.0% | |
| TGTCCGTGCTTCTTATGATG+GGG | - | chr7_3:6828343-6828362 | Msa1091560:intron | 45.0% | |
| TATACAAGCTCACCCGGATA+AGG | - | chr7_3:6828716-6828735 | Msa1091560:CDS | 45.0% | |
| ATCCTAGCCAACTCCTTATC+CGG | + | chr7_3:6828732-6828751 | None:intergenic | 45.0% | |
| !! | TTCTCTCTGGTTGAGTTGAG+AGG | - | chr7_3:6829307-6829326 | Msa1091560:intron | 45.0% |
| TTGCATTTGCAGCACCAACT+AGG | + | chr7_3:6830281-6830300 | None:intergenic | 45.0% | |
| !! | TGGTGCTGCAAATGCAAATC+TGG | - | chr7_3:6830284-6830303 | Msa1091560:intron | 45.0% |
| GGCAGGAACTCATCAAAAGA+TGG | - | chr7_3:6830609-6830628 | Msa1091560:intron | 45.0% | |
| CGTAAGCTAAAAGCAGCTGA+TGG | - | chr7_3:6830812-6830831 | Msa1091560:intron | 45.0% | |
| AGACTGCTTACGAGAGTTCA+TGG | + | chr7_3:6830856-6830875 | None:intergenic | 45.0% | |
| CAGGCCCTAAACATGTTCTT+AGG | - | chr7_3:6830922-6830941 | Msa1091560:intron | 45.0% | |
| ! | GACGAGGCATTTGACAGAAA+AGG | - | chr7_3:6831083-6831102 | Msa1091560:intron | 45.0% |
| GCAATCACACCAATATCGGA+TGG | + | chr7_3:6831141-6831160 | None:intergenic | 45.0% | |
| AACCACGTCAAACTCAATCC+TGG | - | chr7_3:6831174-6831193 | Msa1091560:CDS | 45.0% | |
| ! | TGGGGAGTGTATTGAATGCA+TGG | - | chr7_3:6831242-6831261 | Msa1091560:CDS | 45.0% |
| TCTGACAATGTTGTACGAGC+CGG | - | chr7_3:6831270-6831289 | Msa1091560:CDS | 45.0% | |
| GTGAGCATGGAACAAAGAGT+CGG | + | chr7_3:6831321-6831340 | None:intergenic | 45.0% | |
| TTCCATGCTCACATACAAGC+AGG | - | chr7_3:6831329-6831348 | Msa1091560:intron | 45.0% | |
| TACCTGCTTGTATGTGAGCA+TGG | + | chr7_3:6831334-6831353 | None:intergenic | 45.0% | |
| GAGACTGACATGTCCATATG+TGG | + | chr7_3:6831519-6831538 | None:intergenic | 45.0% | |
| CTCATGCCACATAGATTGCT+TGG | - | chr7_3:6831797-6831816 | Msa1091560:intron | 45.0% | |
| TGCCACATAGATTGCTTGGT+TGG | - | chr7_3:6831801-6831820 | Msa1091560:intron | 45.0% | |
| TCTCGAATTCCTCAAATGGC+GGG | + | chr7_3:6832106-6832125 | None:intergenic | 45.0% | |
| ! | ACACCACTGTTTCCCCTTTT+GGG | + | chr7_3:6832145-6832164 | None:intergenic | 45.0% |
| ! | AACACCACTGTTTCCCCTTT+TGG | + | chr7_3:6832146-6832165 | None:intergenic | 45.0% |
| !! | TCCGTCCATCTTTTTGGTCA+CGG | - | chr7_3:6832181-6832200 | Msa1091560:CDS | 45.0% |
| !! | AGCGAAAAGAGCATCACCTT+CGG | + | chr7_3:6832255-6832274 | None:intergenic | 45.0% |
| ACGCTAATCTCTGTGTAAGC+AGG | + | chr7_3:6832278-6832297 | None:intergenic | 45.0% | |
| GAGTTGCATCTGTACAGAAC+AGG | - | chr7_3:6832311-6832330 | Msa1091560:CDS | 45.0% | |
| AAAAGTGGAAGAGCTTGTGG+AGG | - | chr7_3:6832371-6832390 | Msa1091560:CDS | 45.0% | |
| !! | TTAAACAAAAAATAAATAAA+GGG | + | chr7_3:6828118-6828137 | None:intergenic | 5.0% |
| !! | TTTAAACAAAAAATAAATAA+AGG | + | chr7_3:6828119-6828138 | None:intergenic | 5.0% |
| !!! | TTATTTATTTTTTGTTTAAA+TGG | - | chr7_3:6828119-6828138 | Msa1091560:intron | 5.0% |
| !! | AAAATAAATAAAATTCAAAA+GGG | + | chr7_3:6828606-6828625 | None:intergenic | 5.0% |
| !! | AAAAATAAATAAAATTCAAA+AGG | + | chr7_3:6828607-6828626 | None:intergenic | 5.0% |
| !!! | TTTTATTTATTTTTGTTTAA+AGG | - | chr7_3:6828613-6828632 | Msa1091560:intron | 5.0% |
| !!! | TTTATTTATTTTTGTTTAAA+GGG | - | chr7_3:6828614-6828633 | Msa1091560:intron | 5.0% |
| GCAACCTGTGACAATTGACC+AGG | + | chr7_3:6827663-6827682 | None:intergenic | 50.0% | |
| GCACCCCATCATAAGAAGCA+CGG | + | chr7_3:6828349-6828368 | None:intergenic | 50.0% | |
| ! | TTAGGTGTTGTCTGTGGGGA+AGG | - | chr7_3:6828686-6828705 | Msa1091560:CDS | 50.0% |
| TCCTAGCCAACTCCTTATCC+GGG | + | chr7_3:6828731-6828750 | None:intergenic | 50.0% | |
| GTCATTGCAAGAGCCATCTC+AGG | + | chr7_3:6828801-6828820 | None:intergenic | 50.0% | |
| CCAACTAGGTCGACAACTTC+CGG | + | chr7_3:6830267-6830286 | None:intergenic | 50.0% | |
| GTGAACACTGCCTGTAGAAC+AGG | + | chr7_3:6830351-6830370 | None:intergenic | 50.0% | |
| TCGACTGCATGAGGAAAGTG+AGG | - | chr7_3:6830428-6830447 | Msa1091560:intron | 50.0% | |
| ACACTCATTGCGAACATGGC+AGG | - | chr7_3:6830592-6830611 | Msa1091560:intron | 50.0% | |
| !! | ATGTGGTCTTGGGCCTTGTT+TGG | - | chr7_3:6830660-6830679 | Msa1091560:intron | 50.0% |
| !! | AAAAGGAGCTGTTGGTGCTG+CGG | - | chr7_3:6831100-6831119 | Msa1091560:intron | 50.0% |
| CACCAGGATTGAGTTTGACG+TGG | + | chr7_3:6831179-6831198 | None:intergenic | 50.0% | |
| !! | CCTGGTGAAGCATTGTTCCT+CGG | - | chr7_3:6831192-6831211 | Msa1091560:CDS | 50.0% |
| !! | CTGGTGAAGCATTGTTCCTC+GGG | - | chr7_3:6831193-6831212 | Msa1091560:CDS | 50.0% |
| !! | TGGTGAAGCATTGTTCCTCG+GGG | - | chr7_3:6831194-6831213 | Msa1091560:CDS | 50.0% |
| TCTCCCAAAAGGGGAAACAG+TGG | - | chr7_3:6832139-6832158 | Msa1091560:CDS | 50.0% | |
| ! | TCCAGGTCCGTCCATCTTTT+TGG | - | chr7_3:6832175-6832194 | Msa1091560:CDS | 50.0% |
| ACCAAAAAGATGGACGGACC+TGG | + | chr7_3:6832179-6832198 | None:intergenic | 50.0% | |
| GCCGTGACCAAAAAGATGGA+CGG | + | chr7_3:6832185-6832204 | None:intergenic | 50.0% | |
| !! | TCCATCTTTTTGGTCACGGC+CGG | - | chr7_3:6832185-6832204 | Msa1091560:CDS | 50.0% |
| TGTGTTCATCGATCCTTCCC+CGG | + | chr7_3:6832207-6832226 | None:intergenic | 50.0% | |
| !! | TGAAGGCGTCTCAGAGTGTC+TGG | - | chr7_3:6828208-6828227 | Msa1091560:intron | 55.0% |
| ! | CTTATGATGGGGTGCTCCCT+TGG | - | chr7_3:6828354-6828373 | Msa1091560:intron | 55.0% |
| AGCTCACCCGGATAAGGAGT+TGG | - | chr7_3:6828722-6828741 | Msa1091560:CDS | 55.0% | |
| ACCCGGATAAGGAGTTGGCT+AGG | - | chr7_3:6828727-6828746 | Msa1091560:CDS | 55.0% | |
| ACACGTCATGTAGAGAGGCG+TGG | + | chr7_3:6829856-6829875 | None:intergenic | 55.0% | |
| TCGGATTTCGGTCTTGGCCA+TGG | - | chr7_3:6829915-6829934 | Msa1091560:intron | 55.0% | |
| CCGGAAGTTGTCGACCTAGT+TGG | - | chr7_3:6830264-6830283 | Msa1091560:intron | 55.0% | |
| CCGAGGAACAATGCTTCACC+AGG | + | chr7_3:6831195-6831214 | None:intergenic | 55.0% | |
| ! | GGTTTTCCGGAGATTCTGCG+AGG | - | chr7_3:6832047-6832066 | Msa1091560:intron | 55.0% |
| GACACTCCTCGCAGAATCTC+CGG | + | chr7_3:6832056-6832075 | None:intergenic | 55.0% | |
| AGGGGAAACAGTGGTGTTCC+CGG | - | chr7_3:6832148-6832167 | Msa1091560:CDS | 55.0% | |
| !! | CCATCTTTTTGGTCACGGCC+GGG | - | chr7_3:6832186-6832205 | Msa1091560:CDS | 55.0% |
| !! | CATCTTTTTGGTCACGGCCG+GGG | - | chr7_3:6832187-6832206 | Msa1091560:CDS | 55.0% |
| GGGGAAGGATCGATGAACAC+AGG | - | chr7_3:6832206-6832225 | Msa1091560:CDS | 55.0% | |
| CATGTGGTTCATTCGCCCCG+AGG | + | chr7_3:6831212-6831231 | None:intergenic | 60.0% | |
| ATGGACGGACCTGGAACAGC+CGG | + | chr7_3:6832170-6832189 | None:intergenic | 60.0% | |
| CCCGGCCGTGACCAAAAAGA+TGG | + | chr7_3:6832189-6832208 | None:intergenic | 60.0% | |
| !! | TTTTTGGTCACGGCCGGGGA+AGG | - | chr7_3:6832191-6832210 | Msa1091560:CDS | 60.0% |
| !! | GGAGCTGTTGGTGCTGCGGT+TGG | - | chr7_3:6831104-6831123 | Msa1091560:intron | 65.0% |
| GTGGTGTTCCCGGCTGTTCC+AGG | - | chr7_3:6832158-6832177 | Msa1091560:CDS | 65.0% | |
| TGGACGGACCTGGAACAGCC+GGG | + | chr7_3:6832169-6832188 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 6827288 | 6832715 | 6827288 | ID=Msa1091560;Name=Msa1091560 |
| chr7_3 | mRNA | 6827288 | 6832715 | 6827288 | ID=Msa1091560-mRNA-1;Parent=Msa1091560;Name=Msa1091560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=300|1|1|1|1|1|5|351|425 |
| chr7_3 | exon | 6827288 | 6827956 | 6827288 | ID=Msa1091560-mRNA-1:exon:2163;Parent=Msa1091560-mRNA-1 |
| chr7_3 | exon | 6828653 | 6828919 | 6828653 | ID=Msa1091560-mRNA-1:exon:2162;Parent=Msa1091560-mRNA-1 |
| chr7_3 | exon | 6829554 | 6829766 | 6829554 | ID=Msa1091560-mRNA-1:exon:2161;Parent=Msa1091560-mRNA-1 |
| chr7_3 | exon | 6831146 | 6831313 | 6831146 | ID=Msa1091560-mRNA-1:exon:2160;Parent=Msa1091560-mRNA-1 |
| chr7_3 | exon | 6832104 | 6832715 | 6832104 | ID=Msa1091560-mRNA-1:exon:2159;Parent=Msa1091560-mRNA-1 |
| chr7_3 | five_prime_UTR | 6832416 | 6832715 | 6832416 | ID=Msa1091560-mRNA-1:five_prime_utr;Parent=Msa1091560-mRNA-1 |
| chr7_3 | CDS | 6832104 | 6832415 | 6832104 | ID=Msa1091560-mRNA-1:cds;Parent=Msa1091560-mRNA-1 |
| chr7_3 | CDS | 6831146 | 6831313 | 6831146 | ID=Msa1091560-mRNA-1:cds;Parent=Msa1091560-mRNA-1 |
| chr7_3 | CDS | 6829554 | 6829766 | 6829554 | ID=Msa1091560-mRNA-1:cds;Parent=Msa1091560-mRNA-1 |
| chr7_3 | CDS | 6828653 | 6828919 | 6828653 | ID=Msa1091560-mRNA-1:cds;Parent=Msa1091560-mRNA-1 |
| chr7_3 | CDS | 6827639 | 6827956 | 6827639 | ID=Msa1091560-mRNA-1:cds;Parent=Msa1091560-mRNA-1 |
| chr7_3 | three_prime_UTR | 6827288 | 6827638 | 6827288 | ID=Msa1091560-mRNA-1:three_prime_utr;Parent=Msa1091560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
