Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012430 | XP_013447468.1 | 97.176 | 425 | 11 | 1 | 1 | 425 | 1 | 424 | 0.0 | 853 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012430 | sp|Q9M884|MPI1_ARATH | 60.539 | 408 | 158 | 3 | 15 | 422 | 25 | 429 | 0.0 | 513 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012430 | A0A072TVL2 | 97.176 | 425 | 11 | 1 | 1 | 425 | 1 | 424 | 0.0 | 853 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004540 | Msa1012430 | 0.805424 | 1.343752e-49 | -8.615850e-47 |
Msa0014830 | Msa1012430 | 0.802881 | 4.545117e-49 | -8.615850e-47 |
Msa0029260 | Msa1012430 | 0.803032 | 4.229709e-49 | -8.615850e-47 |
Msa0032260 | Msa1012430 | 0.819082 | 1.399703e-52 | -8.615850e-47 |
Msa0033880 | Msa1012430 | 0.823162 | 1.606605e-53 | -8.615850e-47 |
Msa0041690 | Msa1012430 | 0.810162 | 1.321984e-50 | -8.615850e-47 |
Msa0048180 | Msa1012430 | 0.802450 | 5.577182e-49 | -8.615850e-47 |
Msa0074750 | Msa1012430 | 0.805929 | 1.052815e-49 | -8.615850e-47 |
Msa0076040 | Msa1012430 | 0.818664 | 1.741578e-52 | -8.615850e-47 |
Msa0081650 | Msa1012430 | 0.810068 | 1.385418e-50 | -8.615850e-47 |
Msa0610390 | Msa1012430 | 0.800996 | 1.108995e-48 | -8.615850e-47 |
Msa0614510 | Msa1012430 | 0.810702 | 1.010596e-50 | -8.615850e-47 |
Msa0650920 | Msa1012430 | 0.806299 | 8.801261e-50 | -8.615850e-47 |
Msa0666230 | Msa1012430 | 0.801157 | 1.027945e-48 | -8.615850e-47 |
Msa0687630 | Msa1012430 | 0.800623 | 1.321401e-48 | -8.615850e-47 |
Msa0692840 | Msa1012430 | 0.800133 | 1.662665e-48 | -8.615850e-47 |
Msa0692940 | Msa1012430 | 0.810799 | 9.629445e-51 | -8.615850e-47 |
Msa0697080 | Msa1012430 | 0.802001 | 6.900642e-49 | -8.615850e-47 |
Msa0798000 | Msa1012430 | -0.800069 | 1.713423e-48 | -8.615850e-47 |
Msa0828920 | Msa1012430 | 0.802204 | 6.269706e-49 | -8.615850e-47 |
Msa0833310 | Msa1012430 | 0.801216 | 9.995485e-49 | -8.615850e-47 |
Msa0127850 | Msa1012430 | 0.826491 | 2.635133e-54 | -8.615850e-47 |
Msa0128860 | Msa1012430 | 0.819552 | 1.094152e-52 | -8.615850e-47 |
Msa0140300 | Msa1012430 | 0.810808 | 9.587242e-51 | -8.615850e-47 |
Msa0169300 | Msa1012430 | 0.801188 | 1.012812e-48 | -8.615850e-47 |
Msa0174000 | Msa1012430 | 0.825904 | 3.634458e-54 | -8.615850e-47 |
Msa0174730 | Msa1012430 | 0.819030 | 1.438520e-52 | -8.615850e-47 |
Msa0174770 | Msa1012430 | 0.801070 | 1.070881e-48 | -8.615850e-47 |
Msa0181610 | Msa1012430 | 0.813977 | 1.947875e-51 | -8.615850e-47 |
Msa0199690 | Msa1012430 | 0.812343 | 4.446861e-51 | -8.615850e-47 |
Msa0199880 | Msa1012430 | 0.801897 | 7.250540e-49 | -8.615850e-47 |
Msa0402820 | Msa1012430 | 0.841569 | 4.388829e-58 | -8.615850e-47 |
Msa0439230 | Msa1012430 | 0.959212 | 3.405632e-117 | -8.615850e-47 |
Msa0448750 | Msa1012430 | 0.804769 | 1.843002e-49 | -8.615850e-47 |
Msa0453520 | Msa1012430 | 0.806484 | 8.043462e-50 | -8.615850e-47 |
Msa0453680 | Msa1012430 | 0.803416 | 3.522090e-49 | -8.615850e-47 |
Msa0983320 | Msa1012430 | -0.804666 | 1.936272e-49 | -8.615850e-47 |
Msa1012350 | Msa1012430 | 0.946023 | 1.016251e-104 | -8.615850e-47 |
Msa1012430 | Msa1019240 | 0.803765 | 2.981516e-49 | -8.615850e-47 |
Msa1012430 | Msa1019260 | 0.817526 | 3.150281e-52 | -8.615850e-47 |
Msa1012430 | Msa1060220 | 0.803404 | 3.542978e-49 | -8.615850e-47 |
Msa1012430 | Msa1066490 | 0.820307 | 7.351176e-53 | -8.615850e-47 |
Msa1012430 | Msa1091560 | 0.919951 | 2.364697e-87 | -8.615850e-47 |
Msa1012430 | Msa1100720 | 0.812110 | 4.999659e-51 | -8.615850e-47 |
Msa1012430 | Msa1126510 | 0.827272 | 1.714081e-54 | -8.615850e-47 |
Msa1012430 | Msa1126770 | 0.801552 | 8.532250e-49 | -8.615850e-47 |
Msa1012430 | Msa1127540 | 0.806180 | 9.322396e-50 | -8.615850e-47 |
Msa1012430 | Msa1134110 | 0.818576 | 1.823440e-52 | -8.615850e-47 |
Msa1012430 | Msa1166860 | 0.802481 | 5.496094e-49 | -8.615850e-47 |
Msa1012430 | Msa1192850 | 0.802074 | 6.667677e-49 | -8.615850e-47 |
Msa1012430 | Msa1201120 | 0.802045 | 6.758793e-49 | -8.615850e-47 |
Msa1012430 | Msa1201830 | 0.809592 | 1.753091e-50 | -8.615850e-47 |
Msa1012430 | Msa1202580 | 0.804380 | 2.221005e-49 | -8.615850e-47 |
Msa1012430 | Msa1207270 | 0.804478 | 2.118941e-49 | -8.615850e-47 |
Msa1012430 | Msa1218600 | 0.802216 | 6.232402e-49 | -8.615850e-47 |
Msa1012430 | Msa1227690 | 0.810459 | 1.140518e-50 | -8.615850e-47 |
Msa1012430 | Msa1251160 | 0.818156 | 2.270148e-52 | -8.615850e-47 |
Msa1012430 | Msa1254710 | 0.800239 | 1.582181e-48 | -8.615850e-47 |
Msa1012430 | Msa1294840 | 0.809852 | 1.541464e-50 | -8.615850e-47 |
Msa1012430 | Msa1295110 | 0.804721 | 1.885337e-49 | -8.615850e-47 |
Msa1012430 | Msa1295490 | -0.824566 | 7.528713e-54 | -8.615850e-47 |
Msa1012430 | Msa1307950 | 0.807449 | 5.027066e-50 | -8.615850e-47 |
Msa1012430 | Msa1321630 | 0.808207 | 3.468996e-50 | -8.615850e-47 |
Msa1012430 | Msa1327490 | 0.809036 | 2.307632e-50 | -8.615850e-47 |
Msa1012430 | Msa1344310 | 0.808877 | 2.495036e-50 | -8.615850e-47 |
Msa1012430 | Msa1344850 | 0.816462 | 5.461916e-52 | -8.615850e-47 |
Msa1012430 | Msa1379760 | 0.816337 | 5.824878e-52 | -8.615850e-47 |
Msa1012430 | Msa1392010 | -0.800704 | 1.272257e-48 | -8.615850e-47 |
Msa1012430 | Msa1404190 | 0.810678 | 1.022709e-50 | -8.615850e-47 |
Msa1012430 | Msa1450280 | 0.812804 | 3.526166e-51 | -8.615850e-47 |
Msa1012430 | Msa1465080 | 0.801408 | 9.134128e-49 | -8.615850e-47 |
Msa1012430 | Msa1466460 | 0.801449 | 8.956837e-49 | -8.615850e-47 |
Msa0239450 | Msa1012430 | 0.806174 | 9.347915e-50 | -8.615850e-47 |
Msa0244980 | Msa1012430 | 0.813909 | 2.016063e-51 | -8.615850e-47 |
Msa0283420 | Msa1012430 | 0.800943 | 1.136943e-48 | -8.615850e-47 |
Msa0497420 | Msa1012430 | 0.809265 | 2.060519e-50 | -8.615850e-47 |
Msa0534790 | Msa1012430 | 0.814810 | 1.274520e-51 | -8.615850e-47 |
Msa0552810 | Msa1012430 | 0.821979 | 3.026698e-53 | -8.615850e-47 |
Msa0581070 | Msa1012430 | 0.809013 | 2.333718e-50 | -8.615850e-47 |
Msa0931950 | Msa1012430 | 0.802649 | 5.075267e-49 | -8.615850e-47 |
Msa0974530 | Msa1012430 | 0.811436 | 7.007664e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012430 | MtrunA17_Chr7g0215521 | 97.176 | 425 | 11 | 1 | 1 | 425 | 1 | 424 | 0.0 | 853 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1012430 | AT3G02570.1 | 60.539 | 408 | 158 | 3 | 15 | 422 | 25 | 429 | 0.0 | 513 |
Msa1012430 | AT1G67070.1 | 59.005 | 422 | 161 | 5 | 10 | 423 | 22 | 439 | 1.22e-178 | 506 |
Msa1012430 | AT1G67070.2 | 59.005 | 422 | 161 | 5 | 10 | 423 | 22 | 439 | 1.22e-178 | 506 |
Msa1012430 | AT1G67070.3 | 60.252 | 317 | 116 | 3 | 10 | 319 | 22 | 335 | 2.89e-131 | 382 |
Find 137 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAATTCTTGGATTTGGTTTA+TGG | 0.064643 | 7_1:+17479503 | Msa1012430:three_prime_UTR |
TGATCTACCTTTCTTGTTTA+AGG | 0.068324 | 7_1:+17475231 | Msa1012430:CDS |
AAGCTTTCTGAGCTTAATTC+TGG | 0.161202 | 7_1:+17475037 | Msa1012430:CDS |
TTGAAAGAGATTGTTGAAAA+TGG | 0.169925 | 7_1:-17474908 | None:intergenic |
AACACCACTGTTTCCCCTTT+TGG | 0.191794 | 7_1:-17479242 | None:intergenic |
AGTCGGCACATCTATGAATT+TGG | 0.213240 | 7_1:-17478448 | None:intergenic |
TGGTATTTGAAGAGTATTTA+AGG | 0.222042 | 7_1:-17474850 | None:intergenic |
ATCCTAGCCAACTCCTTATC+TGG | 0.231811 | 7_1:-17476008 | None:intergenic |
TGGATTGGTACCCATGATTC+TGG | 0.276246 | 7_1:+17475097 | Msa1012430:CDS |
GTGGTGTTCCCGGCTGTTCC+AGG | 0.310385 | 7_1:+17479257 | Msa1012430:CDS |
GAGAAAGATTGCAGAAGAAA+TGG | 0.312705 | 7_1:-17474804 | None:intergenic |
GTCATAAAGTTGTTAACAAA+TGG | 0.315743 | 7_1:+17475203 | Msa1012430:CDS |
GAGAATTGAGATTGAGTCAT+TGG | 0.326184 | 7_1:-17474870 | None:intergenic |
TTCGGTGATTTCATAAACTT+TGG | 0.326384 | 7_1:-17479333 | None:intergenic |
AATCAATACCCATCCGATAT+TGG | 0.337274 | 7_1:+17478276 | Msa1012430:CDS |
TGAAAGAGATTGTTGAAAAT+GGG | 0.351869 | 7_1:-17474907 | None:intergenic |
GAACCGCATGCTTATTTATC+CGG | 0.360607 | 7_1:+17478369 | Msa1012430:CDS |
TTGTGGATTTATCACTCTTA+AGG | 0.363037 | 7_1:+17476115 | Msa1012430:CDS |
TTCTGTTAAGAATTACGATT+GGG | 0.363164 | 7_1:+17474985 | Msa1012430:CDS |
CATCTATGAATTTGGGAGTT+AGG | 0.363872 | 7_1:-17478440 | None:intergenic |
AGTTCAGCATAAGGCTTCAT+TGG | 0.364086 | 7_1:-17475073 | None:intergenic |
AAAGGGTTAGTCTTAAAGAT+TGG | 0.368646 | 7_1:+17475152 | Msa1012430:CDS |
TTTAAGGAAGAGAGAGAAAA+GGG | 0.370739 | 7_1:-17474834 | None:intergenic |
AGCTGTGATTCATACTGTTC+CGG | 0.380324 | 7_1:+17477551 | Msa1012430:CDS |
GATAACCCTGATTTGTTGCT+TGG | 0.381000 | 7_1:+17475181 | Msa1012430:CDS |
ATGGTACTGAACCCACTAAT+CGG | 0.382106 | 7_1:-17479599 | None:intergenic |
TTATGACCAAGCAACAAATC+AGG | 0.382854 | 7_1:-17475187 | None:intergenic |
TTTCTTGTTTCTGATGATGA+TGG | 0.384063 | 7_1:+17475127 | Msa1012430:CDS |
GGGATATATTTATTTACATA+TGG | 0.387920 | 7_1:-17479182 | None:intergenic |
AGCTGCAATCACACCAATAT+CGG | 0.389579 | 7_1:-17478289 | None:intergenic |
ATCGTTCGTGCATGAAATTT+CGG | 0.396967 | 7_1:+17474625 | None:intergenic |
TCATAAAGTTGTTAACAAAT+GGG | 0.397679 | 7_1:+17475204 | Msa1012430:CDS |
GAAGAGTACTTAGGTAGCTT+AGG | 0.398833 | 7_1:+17479530 | Msa1012430:three_prime_UTR |
GACACTCCTCGCAGAATCTC+TGG | 0.400985 | 7_1:-17479152 | None:intergenic |
AGGGGAAACAGTGGTGTTCC+CGG | 0.401430 | 7_1:+17479247 | Msa1012430:CDS |
CCAACTAGGTCGACAACTTC+CGG | 0.401669 | 7_1:-17477570 | None:intergenic |
GTCGGCACATCTATGAATTT+GGG | 0.403266 | 7_1:-17478447 | None:intergenic |
AGCTTTCTGAGCTTAATTCT+GGG | 0.415899 | 7_1:+17475038 | Msa1012430:CDS |
TGAAGCCTTATGCTGAACTT+TGG | 0.417829 | 7_1:+17475077 | Msa1012430:CDS |
ATTTAAGGAAGAGAGAGAAA+AGG | 0.419665 | 7_1:-17474835 | None:intergenic |
CTGGTGAAGCATTGTTCCTC+GGG | 0.421661 | 7_1:+17478340 | Msa1012430:CDS |
TAAATATATCCCGCCATTTG+AGG | 0.424847 | 7_1:+17479193 | Msa1012430:CDS |
GTGAACACAGCCTGTAGAAC+AGG | 0.424853 | 7_1:-17477654 | None:intergenic |
GAGTTGCATCTGTACAGAAC+AGG | 0.440421 | 7_1:+17479410 | Msa1012430:CDS |
CCGGAAGTTGTCGACCTAGT+TGG | 0.441959 | 7_1:+17477570 | Msa1012430:CDS |
GAAAAGAAGGACCAGAATCA+TGG | 0.454156 | 7_1:-17475108 | None:intergenic |
ATCGTTGTATTCTCCCAAAA+GGG | 0.454733 | 7_1:+17479228 | Msa1012430:CDS |
TCGGTGATTTCATAAACTTT+GGG | 0.454996 | 7_1:-17479332 | None:intergenic |
TTCCCATCTTTATACACATC+AGG | 0.456949 | 7_1:-17476047 | None:intergenic |
TTGTACTTCATCCCGATTAG+TGG | 0.459096 | 7_1:+17479587 | Msa1012430:three_prime_UTR |
GAAGGTTAAACCTGTTCTAC+AGG | 0.460116 | 7_1:+17477644 | Msa1012430:CDS |
AACCGCATGCTTATTTATCC+GGG | 0.461885 | 7_1:+17478370 | Msa1012430:CDS |
CCTTATGCTGAACTTTGGAT+TGG | 0.462431 | 7_1:+17475082 | Msa1012430:CDS |
CATGTATTAGGTGCTATCTG+TGG | 0.466843 | 7_1:+17475959 | Msa1012430:intron |
ATGGACGGACCTGGAACAGC+CGG | 0.468574 | 7_1:-17479266 | None:intergenic |
GTTCTTCTTTCTTACACAAA+GGG | 0.471658 | 7_1:+17474647 | Msa1012430:five_prime_UTR |
TGGTGCTGCAAATGCAAATC+TGG | 0.472964 | 7_1:+17477590 | Msa1012430:CDS |
ATGTATTAGGTGCTATCTGT+GGG | 0.477009 | 7_1:+17475960 | Msa1012430:intron |
CATCCTGATGTGTATAAAGA+TGG | 0.480890 | 7_1:+17476044 | Msa1012430:CDS |
TGGTACTGAACCCACTAATC+GGG | 0.485125 | 7_1:-17479598 | None:intergenic |
GATTGCAGAAGAAATGGAAA+AGG | 0.485508 | 7_1:-17474798 | None:intergenic |
GTCATTGCAAGAGCCATCTC+AGG | 0.487041 | 7_1:-17476077 | None:intergenic |
TATGAATTTGGGAGTTAGGC+CGG | 0.490147 | 7_1:-17478436 | None:intergenic |
AATTACGATTGGGGTTTACC+TGG | 0.492223 | 7_1:+17474995 | Msa1012430:CDS |
CCTGGTGAAGCATTGTTCCT+CGG | 0.492483 | 7_1:+17478339 | Msa1012430:CDS |
CAAGACTCTTAAGCATTCAA+AGG | 0.501223 | 7_1:+17479452 | Msa1012430:exon |
TCCTAGCCAACTCCTTATCT+GGG | 0.501884 | 7_1:-17476007 | None:intergenic |
CTCTTTCAATCTTCTTACAA+TGG | 0.502557 | 7_1:+17474922 | Msa1012430:exon |
TCGATCTCGAATTCCTCAAA+TGG | 0.502838 | 7_1:-17479206 | None:intergenic |
TATGGAAAAGAAGAGTACTT+AGG | 0.503711 | 7_1:+17479521 | Msa1012430:three_prime_UTR |
GATCGTTGTATTCTCCCAAA+AGG | 0.504887 | 7_1:+17479227 | Msa1012430:CDS |
TTTACCTGGTCAATTGTCAC+AGG | 0.505143 | 7_1:+17475009 | Msa1012430:CDS |
CCAATCCAAAGTTCAGCATA+AGG | 0.505779 | 7_1:-17475082 | None:intergenic |
GGTGAGGCATTTGACAGAAA+AGG | 0.512954 | 7_1:+17478230 | Msa1012430:intron |
ACGCTAATCTCTGTGTAAGC+AGG | 0.519438 | 7_1:-17479374 | None:intergenic |
GTTCTGTTAAGAATTACGAT+TGG | 0.521470 | 7_1:+17474984 | Msa1012430:CDS |
TCACATACCTTAAACAAGAA+AGG | 0.521871 | 7_1:-17475238 | None:intergenic |
TCATCAGAAACAAGAAAAGA+AGG | 0.521989 | 7_1:-17475121 | None:intergenic |
AGCGAAAAGAGCATCACCTT+CGG | 0.522693 | 7_1:-17479351 | None:intergenic |
CACCAGGATTGAGTTTCACA+TGG | 0.523571 | 7_1:-17478323 | None:intergenic |
TTGCATTTGCAGCACCAACT+AGG | 0.525377 | 7_1:-17477584 | None:intergenic |
TTCTGATGATGATGGACAAA+GGG | 0.529434 | 7_1:+17475135 | Msa1012430:CDS |
GGAGCTGTTGGTGCTGCGAT+TGG | 0.529500 | 7_1:+17478251 | Msa1012430:CDS |
TTCCATGCTCACATACAAGC+AGG | 0.540703 | 7_1:+17478476 | Msa1012430:CDS |
TATCAATCTGTTCACAGCAT+AGG | 0.542513 | 7_1:-17477709 | None:intergenic |
TTTGACAGAAAAGGAGCTGT+TGG | 0.543234 | 7_1:+17478239 | Msa1012430:CDS |
CCGAGGAACAATGCTTCACC+AGG | 0.545757 | 7_1:-17478339 | None:intergenic |
TGTGTTCATCGATCCTTCCC+CGG | 0.546008 | 7_1:-17479303 | None:intergenic |
TATACAAGCTCACCCAGATA+AGG | 0.548295 | 7_1:+17475995 | Msa1012430:CDS |
AAGTTTCTGAAGTGAATTGT+GGG | 0.552930 | 7_1:-17474957 | None:intergenic |
TCTCGAATTCCTCAAATGGC+GGG | 0.554372 | 7_1:-17479202 | None:intergenic |
TTAGGTGCTATCTGTGGGGA+AGG | 0.554929 | 7_1:+17475965 | Msa1012430:intron |
TGGGAATCATAAACCTGAGA+TGG | 0.555786 | 7_1:+17476064 | Msa1012430:CDS |
CGGGGAGTGTATTGAATGCA+TGG | 0.556667 | 7_1:+17478389 | Msa1012430:CDS |
AACCATGTGAAACTCAATCC+TGG | 0.557868 | 7_1:+17478321 | Msa1012430:CDS |
CATAAAGTTGTTAACAAATG+GGG | 0.561333 | 7_1:+17475205 | Msa1012430:CDS |
TATGACCAAGCAACAAATCA+GGG | 0.561583 | 7_1:-17475186 | None:intergenic |
TTCAAAGGTGGAAGAGCTTG+TGG | 0.562168 | 7_1:+17479467 | Msa1012430:three_prime_UTR |
TACCTGCTTGTATGTGAGCA+TGG | 0.563027 | 7_1:-17478478 | None:intergenic |
AAAAGAAGGACCAGAATCAT+GGG | 0.564262 | 7_1:-17475107 | None:intergenic |
GGTTCTTCTTTCTTACACAA+AGG | 0.565650 | 7_1:+17474646 | Msa1012430:five_prime_UTR |
GCAATCACACCAATATCGGA+TGG | 0.570657 | 7_1:-17478285 | None:intergenic |
TGTACTTCATCCCGATTAGT+GGG | 0.573043 | 7_1:+17479588 | Msa1012430:three_prime_UTR |
ACCCAGATAAGGAGTTGGCT+AGG | 0.574603 | 7_1:+17476006 | Msa1012430:CDS |
GACTCTTAAGCATTCAAAGG+TGG | 0.575143 | 7_1:+17479455 | Msa1012430:exon |
TGATCAGAATGGTGAAGAGA+AGG | 0.578017 | 7_1:+17477626 | Msa1012430:CDS |
TCTGACAATGTTGTGCGAGC+CGG | 0.584140 | 7_1:+17478417 | Msa1012430:CDS |
CATGCATTCAATACACTCCC+CGG | 0.594196 | 7_1:-17478388 | None:intergenic |
AGAAGAAATGGAAAAGGAAA+CGG | 0.594376 | 7_1:-17474792 | None:intergenic |
GAAGTTTCTGAAGTGAATTG+TGG | 0.595226 | 7_1:-17474958 | None:intergenic |
ATCTCGAATTCCTCAAATGG+CGG | 0.596472 | 7_1:-17479203 | None:intergenic |
ATTGATAAATCGACTGCATG+AGG | 0.598903 | 7_1:+17477725 | Msa1012430:CDS |
TGGACGGACCTGGAACAGCC+GGG | 0.599936 | 7_1:-17479265 | None:intergenic |
AGCTCACCCAGATAAGGAGT+TGG | 0.600443 | 7_1:+17476001 | Msa1012430:CDS |
GCAACCTGTGACAATTGACC+AGG | 0.605256 | 7_1:-17475013 | None:intergenic |
CAATCACACCAATATCGGAT+GGG | 0.611100 | 7_1:-17478284 | None:intergenic |
TTATCTAATCTTGTTGAACA+CGG | 0.613308 | 7_1:-17474687 | None:intergenic |
TGTTCTGTACAGATGCAACT+CGG | 0.623652 | 7_1:-17479408 | None:intergenic |
TCGACTGCATGAGGAAAGTG+AGG | 0.627796 | 7_1:+17477734 | Msa1012430:CDS |
TTTCTGATGATGATGGACAA+AGG | 0.639421 | 7_1:+17475134 | Msa1012430:CDS |
AGAAATGGAAAAGGAAACGG+TGG | 0.642298 | 7_1:-17474789 | None:intergenic |
AAAGTTTATGAAATCACCGA+AGG | 0.643879 | 7_1:+17479335 | Msa1012430:CDS |
TCGTTGTATTCTCCCAAAAG+GGG | 0.650658 | 7_1:+17479229 | Msa1012430:CDS |
ACCGCATGCTTATTTATCCG+GGG | 0.651731 | 7_1:+17478371 | Msa1012430:CDS |
AGTTGCATCTGTACAGAACA+GGG | 0.662530 | 7_1:+17479411 | Msa1012430:CDS |
TTAGAAACTAGTGATCAGAA+TGG | 0.664033 | 7_1:+17477615 | Msa1012430:CDS |
GTGAGCATGGAACAAAGAGT+CGG | 0.664307 | 7_1:-17478465 | None:intergenic |
GGGGAAGGATCGATGAACAC+AGG | 0.664529 | 7_1:+17479305 | Msa1012430:CDS |
ATCCTGATGTGTATAAAGAT+GGG | 0.669111 | 7_1:+17476045 | Msa1012430:CDS |
TCTCCCAAAAGGGGAAACAG+TGG | 0.677647 | 7_1:+17479238 | Msa1012430:CDS |
CATGCGGTTCATTCGCCCCG+AGG | 0.682048 | 7_1:-17478356 | None:intergenic |
TCCCCGGATAAATAAGCATG+CGG | 0.684201 | 7_1:-17478372 | None:intergenic |
TCTGTTAAGAATTACGATTG+GGG | 0.690814 | 7_1:+17474986 | Msa1012430:CDS |
AGTTTCTGAAGTGAATTGTG+GGG | 0.698513 | 7_1:-17474956 | None:intergenic |
TGGTGAAGCATTGTTCCTCG+GGG | 0.705943 | 7_1:+17478341 | Msa1012430:CDS |
AAAGGTGGAAGAGCTTGTGG+AGG | 0.712969 | 7_1:+17479470 | Msa1012430:three_prime_UTR |
TGTATTAGGTGCTATCTGTG+GGG | 0.728182 | 7_1:+17475961 | Msa1012430:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTATTTTTTATTATTTT+TGG | + | chr7_1:17479702-17479721 | Msa1012430:three_prime_UTR | 0.0% |
!!! | TTTTTTTAATGTTTTTTTGT+TGG | + | chr7_1:17475280-17475299 | Msa1012430:intron | 10.0% |
!!! | ACAAAAATTATTAATTTTCT+TGG | - | chr7_1:17476910-17476929 | None:intergenic | 10.0% |
!! | AAATGCAAATAAATAAAAAT+AGG | + | chr7_1:17477067-17477086 | Msa1012430:intron | 10.0% |
!!! | CTAATTTTCAACTTATAATA+AGG | - | chr7_1:17476324-17476343 | None:intergenic | 15.0% |
!!! | CTTATTATAAGTTGAAAATT+AGG | + | chr7_1:17476322-17476341 | Msa1012430:intron | 15.0% |
!! | TTGTTATAAAGTAAAATATG+TGG | + | chr7_1:17476707-17476726 | Msa1012430:intron | 15.0% |
!! | ATGCAATAAGAAATAATTAA+GGG | - | chr7_1:17476970-17476989 | None:intergenic | 15.0% |
!! | AATGCAATAAGAAATAATTA+AGG | - | chr7_1:17476971-17476990 | None:intergenic | 15.0% |
!!! | TTTTTTAAACTTGTAGAATA+AGG | + | chr7_1:17477421-17477440 | Msa1012430:intron | 15.0% |
!!! | TTTCTGTTTTTTTTCTATTT+AGG | + | chr7_1:17477521-17477540 | Msa1012430:intron | 15.0% |
!! | ATTCTAATAATTGAACTTTA+GGG | - | chr7_1:17478751-17478770 | None:intergenic | 15.0% |
!! | AATTCTAATAATTGAACTTT+AGG | - | chr7_1:17478752-17478771 | None:intergenic | 15.0% |
!! | TCATAAAGTTGTTAACAAAT+GGG | + | chr7_1:17475204-17475223 | Msa1012430:CDS | 20.0% |
!!! | GTTGTTTAGTTTTTATGAAA+AGG | + | chr7_1:17475429-17475448 | Msa1012430:intron | 20.0% |
!! | ATTTAAACAAAGAAATCCAA+GGG | - | chr7_1:17475663-17475682 | None:intergenic | 20.0% |
!!! | TTGGATTTCTTTGTTTAAAT+GGG | + | chr7_1:17475663-17475682 | Msa1012430:intron | 20.0% |
!! | GTTGTATATAGTTTATGAAA+AGG | + | chr7_1:17475915-17475934 | Msa1012430:intron | 20.0% |
!! | TATATAGTTTATGAAAAGGT+TGG | + | chr7_1:17475919-17475938 | Msa1012430:intron | 20.0% |
!!! | ATTATAAGTTGAAAATTAGG+TGG | + | chr7_1:17476325-17476344 | Msa1012430:intron | 20.0% |
!!! | TTATTACAGATCTTTTTGTT+TGG | + | chr7_1:17476751-17476770 | Msa1012430:intron | 20.0% |
!!! | TTTGAGAATAAGTTTTTCTT+CGG | + | chr7_1:17476815-17476834 | Msa1012430:intron | 20.0% |
!! | CAATAAAACGACAAATAAAA+AGG | - | chr7_1:17476874-17476893 | None:intergenic | 20.0% |
!! | ATAATACCCTTAACTATTTA+TGG | - | chr7_1:17477011-17477030 | None:intergenic | 20.0% |
!! | ATTTAGTTAACTCAAAAGTT+CGG | + | chr7_1:17477217-17477236 | Msa1012430:intron | 20.0% |
!! | TACAATAAATCAGTAAAAGA+TGG | - | chr7_1:17477473-17477492 | None:intergenic | 20.0% |
!! | TTATTGTAATGTTATTCTCT+TGG | + | chr7_1:17477485-17477504 | Msa1012430:intron | 20.0% |
!!! | TGAATAGACTCTTAATTTTA+TGG | + | chr7_1:17478089-17478108 | Msa1012430:intron | 20.0% |
!!! | AACTATTGATTTCATAATAG+TGG | - | chr7_1:17478131-17478150 | None:intergenic | 20.0% |
!!! | ACTTTTATAACACACATTAA+TGG | + | chr7_1:17478532-17478551 | Msa1012430:intron | 20.0% |
!! | GATTAAACACATATTTATCA+TGG | + | chr7_1:17479040-17479059 | Msa1012430:intron | 20.0% |
!! | GGGATATATTTATTTACATA+TGG | - | chr7_1:17479185-17479204 | None:intergenic | 20.0% |
!! | AGGAAATAAAAAGAAATTCT+TGG | + | chr7_1:17479490-17479509 | Msa1012430:three_prime_UTR | 20.0% |
!! | TAAAAAGAAATTCTTGGATT+TGG | + | chr7_1:17479496-17479515 | Msa1012430:three_prime_UTR | 20.0% |
!!! | TATAATTTTATTCGCAAACA+TGG | - | chr7_1:17479637-17479656 | None:intergenic | 20.0% |
! | TTATCTAATCTTGTTGAACA+CGG | - | chr7_1:17474690-17474709 | None:intergenic | 25.0% |
!!! | TTTTTTGTGGATTCTTGTTT+GGG | - | chr7_1:17474716-17474735 | None:intergenic | 25.0% |
!!! | TGAAGATAATCACTTTTTTG+TGG | - | chr7_1:17474729-17474748 | None:intergenic | 25.0% |
!!! | TGGTATTTGAAGAGTATTTA+AGG | - | chr7_1:17474853-17474872 | None:intergenic | 25.0% |
! | TGAAAGAGATTGTTGAAAAT+GGG | - | chr7_1:17474910-17474929 | None:intergenic | 25.0% |
! | TTGAAAGAGATTGTTGAAAA+TGG | - | chr7_1:17474911-17474930 | None:intergenic | 25.0% |
! | TTCTGTTAAGAATTACGATT+GGG | + | chr7_1:17474985-17475004 | Msa1012430:CDS | 25.0% |
! | GTCATAAAGTTGTTAACAAA+TGG | + | chr7_1:17475203-17475222 | Msa1012430:CDS | 25.0% |
! | CATAAAGTTGTTAACAAATG+GGG | + | chr7_1:17475205-17475224 | Msa1012430:CDS | 25.0% |
!!! | TATGTGATTTTGATTACTAG+TGG | + | chr7_1:17475254-17475273 | Msa1012430:intron | 25.0% |
!! | TTTGTTGGTTACTATGTAAT+TGG | + | chr7_1:17475295-17475314 | Msa1012430:intron | 25.0% |
! | AATTGGTGTGAAATATTCAT+TGG | + | chr7_1:17475312-17475331 | Msa1012430:intron | 25.0% |
! | CATTTAAACAAAGAAATCCA+AGG | - | chr7_1:17475664-17475683 | None:intergenic | 25.0% |
!! | CTTGGATTTCTTTGTTTAAA+TGG | + | chr7_1:17475662-17475681 | Msa1012430:intron | 25.0% |
!!! | TCTGTTGTTTTTCATGTATT+AGG | + | chr7_1:17475947-17475966 | Msa1012430:intron | 25.0% |
! | GGTAGTATTTAATTATTCTG+TGG | + | chr7_1:17476136-17476155 | Msa1012430:intron | 25.0% |
! | TATTATGAGAATAACTGAAC+TGG | + | chr7_1:17476192-17476211 | Msa1012430:intron | 25.0% |
! | ATTGTTAGTTAGAATATCAC+TGG | - | chr7_1:17476624-17476643 | None:intergenic | 25.0% |
!! | AATTTGAAATGATAACCCTT+TGG | + | chr7_1:17476666-17476685 | Msa1012430:intron | 25.0% |
!! | TTGAGAATAAGTTTTTCTTC+GGG | + | chr7_1:17476816-17476835 | Msa1012430:intron | 25.0% |
!! | ACTTATTTGAGATTATCTAC+TGG | - | chr7_1:17478064-17478083 | None:intergenic | 25.0% |
! | AATGTGTGTTATAAAAGTTG+CGG | - | chr7_1:17478530-17478549 | None:intergenic | 25.0% |
!!! | TCAAATTTTAAAACCACGTA+TGG | + | chr7_1:17478624-17478643 | Msa1012430:intron | 25.0% |
!! | AAGACTGAAATAAGTTCTAA+CGG | - | chr7_1:17478777-17478796 | None:intergenic | 25.0% |
! | TCTTCCTTTGAATTTCATAT+TGG | + | chr7_1:17478832-17478851 | Msa1012430:intron | 25.0% |
! | ATGACCAATATGAAATTCAA+AGG | - | chr7_1:17478839-17478858 | None:intergenic | 25.0% |
! | TTTGAATTTCATATTGGTCA+TGG | + | chr7_1:17478838-17478857 | Msa1012430:intron | 25.0% |
! | GATTCATCTTTATTGAGATT+TGG | + | chr7_1:17478860-17478879 | Msa1012430:intron | 25.0% |
! | TGCAAAAAAAACAGAACAAA+AGG | - | chr7_1:17478888-17478907 | None:intergenic | 25.0% |
! | TGTGATATTAACTCAATTGT+AGG | + | chr7_1:17478969-17478988 | Msa1012430:intron | 25.0% |
! | ATGCATAACCATATACTATT+TGG | + | chr7_1:17478999-17479018 | Msa1012430:intron | 25.0% |
!!! | AAATTCTCTTATTTTCTCAC+AGG | + | chr7_1:17479124-17479143 | Msa1012430:intron | 25.0% |
!!! | AATTCTCTTATTTTCTCACA+GGG | + | chr7_1:17479125-17479144 | Msa1012430:intron | 25.0% |
!! | AAATTCTTGGATTTGGTTTA+TGG | + | chr7_1:17479503-17479522 | Msa1012430:three_prime_UTR | 25.0% |
GTTCTTCTTTCTTACACAAA+GGG | + | chr7_1:17474647-17474666 | Msa1012430:five_prime_UTR | 30.0% | |
!!! | CTTTTTTGTGGATTCTTGTT+TGG | - | chr7_1:17474717-17474736 | None:intergenic | 30.0% |
AGAAGAAATGGAAAAGGAAA+CGG | - | chr7_1:17474795-17474814 | None:intergenic | 30.0% | |
TTTAAGGAAGAGAGAGAAAA+GGG | - | chr7_1:17474837-17474856 | None:intergenic | 30.0% | |
ATTTAAGGAAGAGAGAGAAA+AGG | - | chr7_1:17474838-17474857 | None:intergenic | 30.0% | |
CTCTTTCAATCTTCTTACAA+TGG | + | chr7_1:17474922-17474941 | Msa1012430:exon | 30.0% | |
!! | AAGTTTCTGAAGTGAATTGT+GGG | - | chr7_1:17474960-17474979 | None:intergenic | 30.0% |
GTTCTGTTAAGAATTACGAT+TGG | + | chr7_1:17474984-17475003 | Msa1012430:CDS | 30.0% | |
TCTGTTAAGAATTACGATTG+GGG | + | chr7_1:17474986-17475005 | Msa1012430:CDS | 30.0% | |
TCATCAGAAACAAGAAAAGA+AGG | - | chr7_1:17475124-17475143 | None:intergenic | 30.0% | |
!! | TTTCTTGTTTCTGATGATGA+TGG | + | chr7_1:17475127-17475146 | Msa1012430:CDS | 30.0% |
!! | AAAGGGTTAGTCTTAAAGAT+TGG | + | chr7_1:17475152-17475171 | Msa1012430:CDS | 30.0% |
! | TGATCTACCTTTCTTGTTTA+AGG | + | chr7_1:17475231-17475250 | Msa1012430:CDS | 30.0% |
TCACATACCTTAAACAAGAA+AGG | - | chr7_1:17475241-17475260 | None:intergenic | 30.0% | |
!! | TGTTGATAACTAATCTGTGT+CGG | + | chr7_1:17475338-17475357 | Msa1012430:intron | 30.0% |
!!! | GGTGTTTAGTTTTACGAAAA+AGG | + | chr7_1:17475684-17475703 | Msa1012430:intron | 30.0% |
TCAATACAAACATAGACATC+AGG | - | chr7_1:17475848-17475867 | None:intergenic | 30.0% | |
! | TGTTTGTATTGATGCTTCAT+AGG | + | chr7_1:17475856-17475875 | Msa1012430:intron | 30.0% |
ATCCTGATGTGTATAAAGAT+GGG | + | chr7_1:17476045-17476064 | Msa1012430:CDS | 30.0% | |
TTGTGGATTTATCACTCTTA+AGG | + | chr7_1:17476115-17476134 | Msa1012430:CDS | 30.0% | |
AAGGAATTATACCTAACAGA+TGG | - | chr7_1:17476495-17476514 | None:intergenic | 30.0% | |
TTCACTCAGTCATATCATTA+AGG | - | chr7_1:17476514-17476533 | None:intergenic | 30.0% | |
GGTTGTATTGTATCAGAAAA+AGG | - | chr7_1:17476603-17476622 | None:intergenic | 30.0% | |
! | TGAGAATAAGTTTTTCTTCG+GGG | + | chr7_1:17476817-17476836 | Msa1012430:intron | 30.0% |
! | ATTTTCTTGGTACACGTAAA+TGG | - | chr7_1:17476897-17476916 | None:intergenic | 30.0% |
TCTCTGCCATAAATAGTTAA+GGG | + | chr7_1:17477002-17477021 | Msa1012430:intron | 30.0% | |
TACCTAAACAACTGCTAAAA+AGG | + | chr7_1:17477097-17477116 | Msa1012430:intron | 30.0% | |
!! | TTCCTTTTTAGCAGTTGTTT+AGG | - | chr7_1:17477102-17477121 | None:intergenic | 30.0% |
AACTGCTAAAAAGGAACATA+GGG | + | chr7_1:17477106-17477125 | Msa1012430:intron | 30.0% | |
CATGACGTGTCTTTATTAAA+AGG | + | chr7_1:17477153-17477172 | Msa1012430:intron | 30.0% | |
TAACTCAAAAGTTCGGATTT+CGG | + | chr7_1:17477224-17477243 | Msa1012430:intron | 30.0% | |
ACAAGTTAAGACAATGCAAT+CGG | - | chr7_1:17477309-17477328 | None:intergenic | 30.0% | |
AAGATGGTTGAATATACCAA+AGG | - | chr7_1:17477457-17477476 | None:intergenic | 30.0% | |
TTAGAAACTAGTGATCAGAA+TGG | + | chr7_1:17477615-17477634 | Msa1012430:CDS | 30.0% | |
AGTTGATTACTTAATCCGTT+TGG | + | chr7_1:17477759-17477778 | Msa1012430:intron | 30.0% | |
CCAAACTCTTAAAAACCAAA+CGG | - | chr7_1:17477777-17477796 | None:intergenic | 30.0% | |
CATAAGCTAAAATCAGTTGA+TGG | + | chr7_1:17477985-17478004 | Msa1012430:intron | 30.0% | |
! | TAATGTTCTCATTTTGCATC+AGG | + | chr7_1:17478209-17478228 | Msa1012430:intron | 30.0% |
ATATGATAAGCACTTATGCA+AGG | - | chr7_1:17478558-17478577 | None:intergenic | 30.0% | |
TGTTCATGCCAAATAGTATA+TGG | - | chr7_1:17479010-17479029 | None:intergenic | 30.0% | |
TCATGGTTTCAAAATTTCGA+CGG | + | chr7_1:17479057-17479076 | Msa1012430:intron | 30.0% | |
CCTATTACGATTCATTTCAA+AGG | - | chr7_1:17479092-17479111 | None:intergenic | 30.0% | |
!! | CCTTTGAAATGAATCGTAAT+AGG | + | chr7_1:17479089-17479108 | Msa1012430:intron | 30.0% |
TCGGTGATTTCATAAACTTT+GGG | - | chr7_1:17479335-17479354 | None:intergenic | 30.0% | |
TTCGGTGATTTCATAAACTT+TGG | - | chr7_1:17479336-17479355 | None:intergenic | 30.0% | |
AAAGTTTATGAAATCACCGA+AGG | + | chr7_1:17479335-17479354 | Msa1012430:CDS | 30.0% | |
!! | TATGGAAAAGAAGAGTACTT+AGG | + | chr7_1:17479521-17479540 | Msa1012430:three_prime_UTR | 30.0% |
! | AACATGGAAAAAAGTGCAAA+TGG | - | chr7_1:17479621-17479640 | None:intergenic | 30.0% |
GGTTCTTCTTTCTTACACAA+AGG | + | chr7_1:17474646-17474665 | Msa1012430:five_prime_UTR | 35.0% | |
GATTGCAGAAGAAATGGAAA+AGG | - | chr7_1:17474801-17474820 | None:intergenic | 35.0% | |
GAGAAAGATTGCAGAAGAAA+TGG | - | chr7_1:17474807-17474826 | None:intergenic | 35.0% | |
GAGAATTGAGATTGAGTCAT+TGG | - | chr7_1:17474873-17474892 | None:intergenic | 35.0% | |
!! | AGTTTCTGAAGTGAATTGTG+GGG | - | chr7_1:17474959-17474978 | None:intergenic | 35.0% |
!! | GAAGTTTCTGAAGTGAATTG+TGG | - | chr7_1:17474961-17474980 | None:intergenic | 35.0% |
AAGCTTTCTGAGCTTAATTC+TGG | + | chr7_1:17475037-17475056 | Msa1012430:CDS | 35.0% | |
AGCTTTCTGAGCTTAATTCT+GGG | + | chr7_1:17475038-17475057 | Msa1012430:CDS | 35.0% | |
AAAAGAAGGACCAGAATCAT+GGG | - | chr7_1:17475110-17475129 | None:intergenic | 35.0% | |
!! | TTTCTGATGATGATGGACAA+AGG | + | chr7_1:17475134-17475153 | Msa1012430:CDS | 35.0% |
!! | TTCTGATGATGATGGACAAA+GGG | + | chr7_1:17475135-17475154 | Msa1012430:CDS | 35.0% |
TATGACCAAGCAACAAATCA+GGG | - | chr7_1:17475189-17475208 | None:intergenic | 35.0% | |
TTATGACCAAGCAACAAATC+AGG | - | chr7_1:17475190-17475209 | None:intergenic | 35.0% | |
!! | GTTGATAACTAATCTGTGTC+GGG | + | chr7_1:17475339-17475358 | Msa1012430:intron | 35.0% |
! | TTGATAACTAATCTGTGTCG+GGG | + | chr7_1:17475340-17475359 | Msa1012430:intron | 35.0% |
! | ACATTGGTCTGAGCAAAATT+GGG | - | chr7_1:17475372-17475391 | None:intergenic | 35.0% |
! | ATGTATTAGGTGCTATCTGT+GGG | + | chr7_1:17475960-17475979 | Msa1012430:intron | 35.0% |
CATCCTGATGTGTATAAAGA+TGG | + | chr7_1:17476044-17476063 | Msa1012430:CDS | 35.0% | |
TTCCCATCTTTATACACATC+AGG | - | chr7_1:17476050-17476069 | None:intergenic | 35.0% | |
! | TCTTGCAATGACAGATTTTG+AGG | + | chr7_1:17476088-17476107 | Msa1012430:CDS | 35.0% |
TCAATACTCATGAGTGTGAT+TGG | + | chr7_1:17476463-17476482 | Msa1012430:intron | 35.0% | |
GTTGCTTCATTAACTCCAAA+GGG | - | chr7_1:17476684-17476703 | None:intergenic | 35.0% | |
AGTTGCTTCATTAACTCCAA+AGG | - | chr7_1:17476685-17476704 | None:intergenic | 35.0% | |
AAAGCAGCAGAACTTCAATT+TGG | - | chr7_1:17476782-17476801 | None:intergenic | 35.0% | |
! | GAGAATAAGTTTTTCTTCGG+GGG | + | chr7_1:17476818-17476837 | Msa1012430:intron | 35.0% |
CTCTCTGCCATAAATAGTTA+AGG | + | chr7_1:17477001-17477020 | Msa1012430:intron | 35.0% | |
CAACTGCTAAAAAGGAACAT+AGG | + | chr7_1:17477105-17477124 | Msa1012430:intron | 35.0% | |
AGAATGACAGAAATGAACCA+TGG | - | chr7_1:17477256-17477275 | None:intergenic | 35.0% | |
ATTTCTGTCATTCTCCAAGA+CGG | + | chr7_1:17477262-17477281 | Msa1012430:intron | 35.0% | |
CAAGTTAAGACAATGCAATC+GGG | - | chr7_1:17477308-17477327 | None:intergenic | 35.0% | |
TCGACCAAAAAAGACTGTTT+AGG | - | chr7_1:17477368-17477387 | None:intergenic | 35.0% | |
ATAAGGTTAGAGCTTACCTT+TGG | + | chr7_1:17477438-17477457 | Msa1012430:intron | 35.0% | |
TATCAATCTGTTCACAGCAT+AGG | - | chr7_1:17477712-17477731 | None:intergenic | 35.0% | |
ATTGATAAATCGACTGCATG+AGG | + | chr7_1:17477725-17477744 | Msa1012430:CDS | 35.0% | |
!!! | CCGTTTGGTTTTTAAGAGTT+TGG | + | chr7_1:17477774-17477793 | Msa1012430:intron | 35.0% |
ACTAACATTACGAGACAAGA+AGG | - | chr7_1:17477833-17477852 | None:intergenic | 35.0% | |
AATGTTAGTTACGATGTACG+TGG | + | chr7_1:17477844-17477863 | Msa1012430:intron | 35.0% | |
TGAAGTCGTTTATCCAAACA+AGG | - | chr7_1:17477877-17477896 | None:intergenic | 35.0% | |
GTTTCTCCATATTGTGTGTT+AGG | + | chr7_1:17478166-17478185 | Msa1012430:intron | 35.0% | |
CATCTACCTAACACACAATA+TGG | - | chr7_1:17478175-17478194 | None:intergenic | 35.0% | |
AATCAATACCCATCCGATAT+TGG | + | chr7_1:17478276-17478295 | Msa1012430:CDS | 35.0% | |
CATCTATGAATTTGGGAGTT+AGG | - | chr7_1:17478443-17478462 | None:intergenic | 35.0% | |
TACACCTGATTACTATGCTA+AGG | + | chr7_1:17478796-17478815 | Msa1012430:intron | 35.0% | |
CAAAATTTCGACGGAATACA+TGG | + | chr7_1:17479066-17479085 | Msa1012430:intron | 35.0% | |
TAAATATATCCCGCCATTTG+AGG | + | chr7_1:17479193-17479212 | Msa1012430:CDS | 35.0% | |
ATCGTTGTATTCTCCCAAAA+GGG | + | chr7_1:17479228-17479247 | Msa1012430:CDS | 35.0% | |
CAAGACTCTTAAGCATTCAA+AGG | + | chr7_1:17479452-17479471 | Msa1012430:exon | 35.0% | |
!!! | TAGGTAGTTTTCGAGTTCTT+TGG | + | chr7_1:17479549-17479568 | Msa1012430:three_prime_UTR | 35.0% |
!!! | TAGTTTTCGAGTTCTTTGGT+GGG | + | chr7_1:17479553-17479572 | Msa1012430:three_prime_UTR | 35.0% |
AGAAATGGAAAAGGAAACGG+TGG | - | chr7_1:17474792-17474811 | None:intergenic | 40.0% | |
AATTACGATTGGGGTTTACC+TGG | + | chr7_1:17474995-17475014 | Msa1012430:CDS | 40.0% | |
TTTACCTGGTCAATTGTCAC+AGG | + | chr7_1:17475009-17475028 | Msa1012430:CDS | 40.0% | |
AGTTCAGCATAAGGCTTCAT+TGG | - | chr7_1:17475076-17475095 | None:intergenic | 40.0% | |
! | TGAAGCCTTATGCTGAACTT+TGG | + | chr7_1:17475077-17475096 | Msa1012430:CDS | 40.0% |
CCAATCCAAAGTTCAGCATA+AGG | - | chr7_1:17475085-17475104 | None:intergenic | 40.0% | |
CCTTATGCTGAACTTTGGAT+TGG | + | chr7_1:17475082-17475101 | Msa1012430:CDS | 40.0% | |
GAAAAGAAGGACCAGAATCA+TGG | - | chr7_1:17475111-17475130 | None:intergenic | 40.0% | |
!! | GATAACCCTGATTTGTTGCT+TGG | + | chr7_1:17475181-17475200 | Msa1012430:CDS | 40.0% |
TGATAACTAATCTGTGTCGG+GGG | + | chr7_1:17475341-17475360 | Msa1012430:intron | 40.0% | |
! | CACATTGGTCTGAGCAAAAT+TGG | - | chr7_1:17475373-17475392 | None:intergenic | 40.0% |
!! | AAGGGTATCCAACATCACAT+TGG | - | chr7_1:17475388-17475407 | None:intergenic | 40.0% |
ACACCTTCAACCTCAAATGT+CGG | - | chr7_1:17475485-17475504 | None:intergenic | 40.0% | |
GTGTCTAACACAGTCATTGT+TGG | + | chr7_1:17475523-17475542 | Msa1012430:intron | 40.0% | |
TGTATCCGTGCTTCTTATGA+TGG | + | chr7_1:17475631-17475650 | Msa1012430:intron | 40.0% | |
GTATCCGTGCTTCTTATGAT+GGG | + | chr7_1:17475632-17475651 | Msa1012430:intron | 40.0% | |
TATCCGTGCTTCTTATGATG+GGG | + | chr7_1:17475633-17475652 | Msa1012430:intron | 40.0% | |
GTTCTTGTCTAACAAGACAC+TGG | + | chr7_1:17475763-17475782 | Msa1012430:intron | 40.0% | |
! | CATGTATTAGGTGCTATCTG+TGG | + | chr7_1:17475959-17475978 | Msa1012430:intron | 40.0% |
! | TGTATTAGGTGCTATCTGTG+GGG | + | chr7_1:17475961-17475980 | Msa1012430:intron | 40.0% |
TATACAAGCTCACCCAGATA+AGG | + | chr7_1:17475995-17476014 | Msa1012430:CDS | 40.0% | |
TGGGAATCATAAACCTGAGA+TGG | + | chr7_1:17476064-17476083 | Msa1012430:CDS | 40.0% | |
!!! | ACAGATTTTGAGGCTCTTTG+TGG | + | chr7_1:17476098-17476117 | Msa1012430:CDS | 40.0% |
ATTGGAACTGTCCATCTGTT+AGG | + | chr7_1:17476481-17476500 | Msa1012430:intron | 40.0% | |
CATGTCAATCTCATTCTCTC+TGG | + | chr7_1:17476564-17476583 | Msa1012430:intron | 40.0% | |
!! | AGTTCTGCTGCTTTAGTTTG+AGG | + | chr7_1:17476788-17476807 | Msa1012430:intron | 40.0% |
TAAAGACACGTCATGTAGAG+AGG | - | chr7_1:17477148-17477167 | None:intergenic | 40.0% | |
TTTCTGTCATTCTCCAAGAC+GGG | + | chr7_1:17477263-17477282 | Msa1012430:intron | 40.0% | |
GCAGTATTAAAATCCCGTCT+TGG | - | chr7_1:17477279-17477298 | None:intergenic | 40.0% | |
!!! | GTCGCCTAAACAGTCTTTTT+TGG | + | chr7_1:17477361-17477380 | Msa1012430:intron | 40.0% |
AGCTGTGATTCATACTGTTC+CGG | + | chr7_1:17477551-17477570 | Msa1012430:CDS | 40.0% | |
TGATCAGAATGGTGAAGAGA+AGG | + | chr7_1:17477626-17477645 | Msa1012430:CDS | 40.0% | |
GAAGGTTAAACCTGTTCTAC+AGG | + | chr7_1:17477644-17477663 | Msa1012430:CDS | 40.0% | |
! | AGAGTGTTTAGGAGAGCTTA+TGG | - | chr7_1:17478027-17478046 | None:intergenic | 40.0% |
! | TTCTCATTTTGCATCAGGTG+AGG | + | chr7_1:17478214-17478233 | Msa1012430:intron | 40.0% |
TTTGACAGAAAAGGAGCTGT+TGG | + | chr7_1:17478239-17478258 | Msa1012430:CDS | 40.0% | |
CAATCACACCAATATCGGAT+GGG | - | chr7_1:17478287-17478306 | None:intergenic | 40.0% | |
AGCTGCAATCACACCAATAT+CGG | - | chr7_1:17478292-17478311 | None:intergenic | 40.0% | |
AACCATGTGAAACTCAATCC+TGG | + | chr7_1:17478321-17478340 | Msa1012430:CDS | 40.0% | |
GAACCGCATGCTTATTTATC+CGG | + | chr7_1:17478369-17478388 | Msa1012430:CDS | 40.0% | |
AACCGCATGCTTATTTATCC+GGG | + | chr7_1:17478370-17478389 | Msa1012430:CDS | 40.0% | |
TATGAATTTGGGAGTTAGGC+CGG | - | chr7_1:17478439-17478458 | None:intergenic | 40.0% | |
GTCGGCACATCTATGAATTT+GGG | - | chr7_1:17478450-17478469 | None:intergenic | 40.0% | |
AGTCGGCACATCTATGAATT+TGG | - | chr7_1:17478451-17478470 | None:intergenic | 40.0% | |
CATGCCTTAGCATAGTAATC+AGG | - | chr7_1:17478803-17478822 | None:intergenic | 40.0% | |
AACCAACCAAGCAATCTATG+TGG | - | chr7_1:17478928-17478947 | None:intergenic | 40.0% | |
ACATAGATTGCTTGGTTGGT+TGG | + | chr7_1:17478927-17478946 | Msa1012430:intron | 40.0% | |
ATCTCGAATTCCTCAAATGG+CGG | - | chr7_1:17479206-17479225 | None:intergenic | 40.0% | |
TCGATCTCGAATTCCTCAAA+TGG | - | chr7_1:17479209-17479228 | None:intergenic | 40.0% | |
GATCGTTGTATTCTCCCAAA+AGG | + | chr7_1:17479227-17479246 | Msa1012430:CDS | 40.0% | |
TCGTTGTATTCTCCCAAAAG+GGG | + | chr7_1:17479229-17479248 | Msa1012430:CDS | 40.0% | |
GATGTGACCAAAAAGATGGA+CGG | - | chr7_1:17479284-17479303 | None:intergenic | 40.0% | |
!! | TCCATCTTTTTGGTCACATC+CGG | + | chr7_1:17479284-17479303 | Msa1012430:CDS | 40.0% |
TGTTCTGTACAGATGCAACT+CGG | - | chr7_1:17479411-17479430 | None:intergenic | 40.0% | |
AGTTGCATCTGTACAGAACA+GGG | + | chr7_1:17479411-17479430 | Msa1012430:CDS | 40.0% | |
GACTCTTAAGCATTCAAAGG+TGG | + | chr7_1:17479455-17479474 | Msa1012430:exon | 40.0% | |
!! | GAAGAGTACTTAGGTAGCTT+AGG | + | chr7_1:17479530-17479549 | Msa1012430:three_prime_UTR | 40.0% |
!!! | GTAGTTTTCGAGTTCTTTGG+TGG | + | chr7_1:17479552-17479571 | Msa1012430:three_prime_UTR | 40.0% |
TTGTACTTCATCCCGATTAG+TGG | + | chr7_1:17479587-17479606 | Msa1012430:three_prime_UTR | 40.0% | |
TGTACTTCATCCCGATTAGT+GGG | + | chr7_1:17479588-17479607 | Msa1012430:three_prime_UTR | 40.0% | |
! | ATGGTACTGAACCCACTAAT+CGG | - | chr7_1:17479602-17479621 | None:intergenic | 40.0% |
!! | TGGATTGGTACCCATGATTC+TGG | + | chr7_1:17475097-17475116 | Msa1012430:CDS | 45.0% |
TGCTCAGACCAATGTGATGT+TGG | + | chr7_1:17475377-17475396 | Msa1012430:intron | 45.0% | |
!! | CTATGTAGCACCGACATTTG+AGG | + | chr7_1:17475472-17475491 | Msa1012430:intron | 45.0% |
TCCTAGCCAACTCCTTATCT+GGG | - | chr7_1:17476010-17476029 | None:intergenic | 45.0% | |
ATCCTAGCCAACTCCTTATC+TGG | - | chr7_1:17476011-17476030 | None:intergenic | 45.0% | |
!! | TTCTCTCTGGTTGAGTTGAG+AGG | + | chr7_1:17476577-17476596 | Msa1012430:intron | 45.0% |
GACATCCGTTGTTACTCTCT+CGG | + | chr7_1:17476846-17476865 | Msa1012430:intron | 45.0% | |
AGGAACCGAGAGAGTAACAA+CGG | - | chr7_1:17476854-17476873 | None:intergenic | 45.0% | |
TTATGGCAGAGAGAGATACG+CGG | - | chr7_1:17476994-17477013 | None:intergenic | 45.0% | |
TTGCATTTGCAGCACCAACT+AGG | - | chr7_1:17477587-17477606 | None:intergenic | 45.0% | |
!! | TGGTGCTGCAAATGCAAATC+TGG | + | chr7_1:17477590-17477609 | Msa1012430:CDS | 45.0% |
!! | ACGTGGTCTTAAGCCTTGTT+TGG | + | chr7_1:17477861-17477880 | Msa1012430:intron | 45.0% |
!! | GAGCACTTGTGAGAGTGTTT+AGG | - | chr7_1:17478038-17478057 | None:intergenic | 45.0% |
! | GGTGAGGCATTTGACAGAAA+AGG | + | chr7_1:17478230-17478249 | Msa1012430:intron | 45.0% |
GCAATCACACCAATATCGGA+TGG | - | chr7_1:17478288-17478307 | None:intergenic | 45.0% | |
CACCAGGATTGAGTTTCACA+TGG | - | chr7_1:17478326-17478345 | None:intergenic | 45.0% | |
ACCGCATGCTTATTTATCCG+GGG | + | chr7_1:17478371-17478390 | Msa1012430:CDS | 45.0% | |
TCCCCGGATAAATAAGCATG+CGG | - | chr7_1:17478375-17478394 | None:intergenic | 45.0% | |
CATGCATTCAATACACTCCC+CGG | - | chr7_1:17478391-17478410 | None:intergenic | 45.0% | |
GTGAGCATGGAACAAAGAGT+CGG | - | chr7_1:17478468-17478487 | None:intergenic | 45.0% | |
TTCCATGCTCACATACAAGC+AGG | + | chr7_1:17478476-17478495 | Msa1012430:CDS | 45.0% | |
TACCTGCTTGTATGTGAGCA+TGG | - | chr7_1:17478481-17478500 | None:intergenic | 45.0% | |
CTCATGCCACATAGATTGCT+TGG | + | chr7_1:17478919-17478938 | Msa1012430:intron | 45.0% | |
TGCCACATAGATTGCTTGGT+TGG | + | chr7_1:17478923-17478942 | Msa1012430:intron | 45.0% | |
TCTCGAATTCCTCAAATGGC+GGG | - | chr7_1:17479205-17479224 | None:intergenic | 45.0% | |
! | ACACCACTGTTTCCCCTTTT+GGG | - | chr7_1:17479244-17479263 | None:intergenic | 45.0% |
! | AACACCACTGTTTCCCCTTT+TGG | - | chr7_1:17479245-17479264 | None:intergenic | 45.0% |
!! | CCATCTTTTTGGTCACATCC+GGG | + | chr7_1:17479285-17479304 | Msa1012430:CDS | 45.0% |
!! | CATCTTTTTGGTCACATCCG+GGG | + | chr7_1:17479286-17479305 | Msa1012430:CDS | 45.0% |
!! | AGCGAAAAGAGCATCACCTT+CGG | - | chr7_1:17479354-17479373 | None:intergenic | 45.0% |
ACGCTAATCTCTGTGTAAGC+AGG | - | chr7_1:17479377-17479396 | None:intergenic | 45.0% | |
GAGTTGCATCTGTACAGAAC+AGG | + | chr7_1:17479410-17479429 | Msa1012430:CDS | 45.0% | |
TTCAAAGGTGGAAGAGCTTG+TGG | + | chr7_1:17479467-17479486 | Msa1012430:three_prime_UTR | 45.0% | |
! | TGGTACTGAACCCACTAATC+GGG | - | chr7_1:17479601-17479620 | None:intergenic | 45.0% |
!! | TTAAACAAAAAATAAATAAA+GGG | - | chr7_1:17475406-17475425 | None:intergenic | 5.0% |
!! | TTTAAACAAAAAATAAATAA+AGG | - | chr7_1:17475407-17475426 | None:intergenic | 5.0% |
!!! | TTATTTATTTTTTGTTTAAA+TGG | + | chr7_1:17475407-17475426 | Msa1012430:intron | 5.0% |
!! | AAACAAAATAAAAATAAAAA+GGG | - | chr7_1:17475890-17475909 | None:intergenic | 5.0% |
!! | TAAACAAAATAAAAATAAAA+AGG | - | chr7_1:17475891-17475910 | None:intergenic | 5.0% |
!!! | TTATTTTTATTTTGTTTAAA+AGG | + | chr7_1:17475893-17475912 | Msa1012430:intron | 5.0% |
GCAACCTGTGACAATTGACC+AGG | - | chr7_1:17475016-17475035 | None:intergenic | 50.0% | |
! | GCACCGACATTTGAGGTTGA+AGG | + | chr7_1:17475479-17475498 | Msa1012430:intron | 50.0% |
GCACCCCATCATAAGAAGCA+CGG | - | chr7_1:17475639-17475658 | None:intergenic | 50.0% | |
! | TTAGGTGCTATCTGTGGGGA+AGG | + | chr7_1:17475965-17475984 | Msa1012430:intron | 50.0% |
AGCTCACCCAGATAAGGAGT+TGG | + | chr7_1:17476001-17476020 | Msa1012430:CDS | 50.0% | |
ACCCAGATAAGGAGTTGGCT+AGG | + | chr7_1:17476006-17476025 | Msa1012430:CDS | 50.0% | |
GTCATTGCAAGAGCCATCTC+AGG | - | chr7_1:17476080-17476099 | None:intergenic | 50.0% | |
! | TCGGATTTCGGTCTTGTCCA+TGG | + | chr7_1:17477236-17477255 | Msa1012430:intron | 50.0% |
CCAACTAGGTCGACAACTTC+CGG | - | chr7_1:17477573-17477592 | None:intergenic | 50.0% | |
GTGAACACAGCCTGTAGAAC+AGG | - | chr7_1:17477657-17477676 | None:intergenic | 50.0% | |
TCGACTGCATGAGGAAAGTG+AGG | + | chr7_1:17477734-17477753 | Msa1012430:CDS | 50.0% | |
!! | CCTGGTGAAGCATTGTTCCT+CGG | + | chr7_1:17478339-17478358 | Msa1012430:CDS | 50.0% |
!! | CTGGTGAAGCATTGTTCCTC+GGG | + | chr7_1:17478340-17478359 | Msa1012430:CDS | 50.0% |
!! | TGGTGAAGCATTGTTCCTCG+GGG | + | chr7_1:17478341-17478360 | Msa1012430:CDS | 50.0% |
! | CGGGGAGTGTATTGAATGCA+TGG | + | chr7_1:17478389-17478408 | Msa1012430:CDS | 50.0% |
TCTGACAATGTTGTGCGAGC+CGG | + | chr7_1:17478417-17478436 | Msa1012430:CDS | 50.0% | |
GAGACTGACATGTCCATACG+TGG | - | chr7_1:17478640-17478659 | None:intergenic | 50.0% | |
! | GGTTTTCCAGAGATTCTGCG+AGG | + | chr7_1:17479146-17479165 | Msa1012430:CDS | 50.0% |
TCTCCCAAAAGGGGAAACAG+TGG | + | chr7_1:17479238-17479257 | Msa1012430:CDS | 50.0% | |
! | TCCAGGTCCGTCCATCTTTT+TGG | + | chr7_1:17479274-17479293 | Msa1012430:CDS | 50.0% |
ACCAAAAAGATGGACGGACC+TGG | - | chr7_1:17479278-17479297 | None:intergenic | 50.0% | |
CCCGGATGTGACCAAAAAGA+TGG | - | chr7_1:17479288-17479307 | None:intergenic | 50.0% | |
!! | TTTTTGGTCACATCCGGGGA+AGG | + | chr7_1:17479290-17479309 | Msa1012430:CDS | 50.0% |
TGTGTTCATCGATCCTTCCC+CGG | - | chr7_1:17479306-17479325 | None:intergenic | 50.0% | |
AAAGGTGGAAGAGCTTGTGG+AGG | + | chr7_1:17479470-17479489 | Msa1012430:three_prime_UTR | 50.0% | |
! | CTTATGATGGGGTGCTCCCT+TGG | + | chr7_1:17475644-17475663 | Msa1012430:intron | 55.0% |
ACACGTCATGTAGAGAGGCG+TGG | - | chr7_1:17477143-17477162 | None:intergenic | 55.0% | |
CCGGAAGTTGTCGACCTAGT+TGG | + | chr7_1:17477570-17477589 | Msa1012430:CDS | 55.0% | |
CCGAGGAACAATGCTTCACC+AGG | - | chr7_1:17478342-17478361 | None:intergenic | 55.0% | |
GACACTCCTCGCAGAATCTC+TGG | - | chr7_1:17479155-17479174 | None:intergenic | 55.0% | |
AGGGGAAACAGTGGTGTTCC+CGG | + | chr7_1:17479247-17479266 | Msa1012430:CDS | 55.0% | |
GGGGAAGGATCGATGAACAC+AGG | + | chr7_1:17479305-17479324 | Msa1012430:CDS | 55.0% | |
!! | GGAGCTGTTGGTGCTGCGAT+TGG | + | chr7_1:17478251-17478270 | Msa1012430:CDS | 60.0% |
ATGGACGGACCTGGAACAGC+CGG | - | chr7_1:17479269-17479288 | None:intergenic | 60.0% | |
CATGCGGTTCATTCGCCCCG+AGG | - | chr7_1:17478359-17478378 | None:intergenic | 65.0% | |
GTGGTGTTCCCGGCTGTTCC+AGG | + | chr7_1:17479257-17479276 | Msa1012430:CDS | 65.0% | |
TGGACGGACCTGGAACAGCC+GGG | - | chr7_1:17479268-17479287 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_1 | gene | 17474636 | 17479813 | 17474636 | ID=Msa1012430;Name=Msa1012430 |
chr7_1 | mRNA | 17474636 | 17479813 | 17474636 | ID=Msa1012430-mRNA-1;Parent=Msa1012430;Name=Msa1012430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=305|1|1|1|1|1|5|350|425 |
chr7_1 | exon | 17474636 | 17475252 | 17474636 | ID=Msa1012430-mRNA-1:exon:4372;Parent=Msa1012430-mRNA-1 |
chr7_1 | exon | 17475969 | 17476136 | 17475969 | ID=Msa1012430-mRNA-1:exon:4373;Parent=Msa1012430-mRNA-1 |
chr7_1 | exon | 17477543 | 17477755 | 17477543 | ID=Msa1012430-mRNA-1:exon:4374;Parent=Msa1012430-mRNA-1 |
chr7_1 | exon | 17478231 | 17478497 | 17478231 | ID=Msa1012430-mRNA-1:exon:4375;Parent=Msa1012430-mRNA-1 |
chr7_1 | exon | 17479146 | 17479813 | 17479146 | ID=Msa1012430-mRNA-1:exon:4376;Parent=Msa1012430-mRNA-1 |
chr7_1 | five_prime_UTR | 17474636 | 17474940 | 17474636 | ID=Msa1012430-mRNA-1:five_prime_utr;Parent=Msa1012430-mRNA-1 |
chr7_1 | CDS | 17474941 | 17475252 | 17474941 | ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1 |
chr7_1 | CDS | 17475969 | 17476136 | 17475969 | ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1 |
chr7_1 | CDS | 17477543 | 17477755 | 17477543 | ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1 |
chr7_1 | CDS | 17478231 | 17478497 | 17478231 | ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1 |
chr7_1 | CDS | 17479146 | 17479463 | 17479146 | ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1 |
chr7_1 | three_prime_UTR | 17479464 | 17479813 | 17479464 | ID=Msa1012430-mRNA-1:three_prime_utr;Parent=Msa1012430-mRNA-1 |
Gene Sequence |
Protein sequence |