AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012430 MtrunA17_Chr7g0215521 97.176 425 11 1 1 425 1 424 0.0 853
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012430 AT3G02570.1 60.539 408 158 3 15 422 25 429 0.0 513
Msa1012430 AT1G67070.1 59.005 422 161 5 10 423 22 439 1.22e-178 506
Msa1012430 AT1G67070.2 59.005 422 161 5 10 423 22 439 1.22e-178 506
Msa1012430 AT1G67070.3 60.252 317 116 3 10 319 22 335 2.89e-131 382

Find 137 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTCTTGGATTTGGTTTA+TGG 0.064643 7_1:+17479503 Msa1012430:three_prime_UTR
TGATCTACCTTTCTTGTTTA+AGG 0.068324 7_1:+17475231 Msa1012430:CDS
AAGCTTTCTGAGCTTAATTC+TGG 0.161202 7_1:+17475037 Msa1012430:CDS
TTGAAAGAGATTGTTGAAAA+TGG 0.169925 7_1:-17474908 None:intergenic
AACACCACTGTTTCCCCTTT+TGG 0.191794 7_1:-17479242 None:intergenic
AGTCGGCACATCTATGAATT+TGG 0.213240 7_1:-17478448 None:intergenic
TGGTATTTGAAGAGTATTTA+AGG 0.222042 7_1:-17474850 None:intergenic
ATCCTAGCCAACTCCTTATC+TGG 0.231811 7_1:-17476008 None:intergenic
TGGATTGGTACCCATGATTC+TGG 0.276246 7_1:+17475097 Msa1012430:CDS
GTGGTGTTCCCGGCTGTTCC+AGG 0.310385 7_1:+17479257 Msa1012430:CDS
GAGAAAGATTGCAGAAGAAA+TGG 0.312705 7_1:-17474804 None:intergenic
GTCATAAAGTTGTTAACAAA+TGG 0.315743 7_1:+17475203 Msa1012430:CDS
GAGAATTGAGATTGAGTCAT+TGG 0.326184 7_1:-17474870 None:intergenic
TTCGGTGATTTCATAAACTT+TGG 0.326384 7_1:-17479333 None:intergenic
AATCAATACCCATCCGATAT+TGG 0.337274 7_1:+17478276 Msa1012430:CDS
TGAAAGAGATTGTTGAAAAT+GGG 0.351869 7_1:-17474907 None:intergenic
GAACCGCATGCTTATTTATC+CGG 0.360607 7_1:+17478369 Msa1012430:CDS
TTGTGGATTTATCACTCTTA+AGG 0.363037 7_1:+17476115 Msa1012430:CDS
TTCTGTTAAGAATTACGATT+GGG 0.363164 7_1:+17474985 Msa1012430:CDS
CATCTATGAATTTGGGAGTT+AGG 0.363872 7_1:-17478440 None:intergenic
AGTTCAGCATAAGGCTTCAT+TGG 0.364086 7_1:-17475073 None:intergenic
AAAGGGTTAGTCTTAAAGAT+TGG 0.368646 7_1:+17475152 Msa1012430:CDS
TTTAAGGAAGAGAGAGAAAA+GGG 0.370739 7_1:-17474834 None:intergenic
AGCTGTGATTCATACTGTTC+CGG 0.380324 7_1:+17477551 Msa1012430:CDS
GATAACCCTGATTTGTTGCT+TGG 0.381000 7_1:+17475181 Msa1012430:CDS
ATGGTACTGAACCCACTAAT+CGG 0.382106 7_1:-17479599 None:intergenic
TTATGACCAAGCAACAAATC+AGG 0.382854 7_1:-17475187 None:intergenic
TTTCTTGTTTCTGATGATGA+TGG 0.384063 7_1:+17475127 Msa1012430:CDS
GGGATATATTTATTTACATA+TGG 0.387920 7_1:-17479182 None:intergenic
AGCTGCAATCACACCAATAT+CGG 0.389579 7_1:-17478289 None:intergenic
ATCGTTCGTGCATGAAATTT+CGG 0.396967 7_1:+17474625 None:intergenic
TCATAAAGTTGTTAACAAAT+GGG 0.397679 7_1:+17475204 Msa1012430:CDS
GAAGAGTACTTAGGTAGCTT+AGG 0.398833 7_1:+17479530 Msa1012430:three_prime_UTR
GACACTCCTCGCAGAATCTC+TGG 0.400985 7_1:-17479152 None:intergenic
AGGGGAAACAGTGGTGTTCC+CGG 0.401430 7_1:+17479247 Msa1012430:CDS
CCAACTAGGTCGACAACTTC+CGG 0.401669 7_1:-17477570 None:intergenic
GTCGGCACATCTATGAATTT+GGG 0.403266 7_1:-17478447 None:intergenic
AGCTTTCTGAGCTTAATTCT+GGG 0.415899 7_1:+17475038 Msa1012430:CDS
TGAAGCCTTATGCTGAACTT+TGG 0.417829 7_1:+17475077 Msa1012430:CDS
ATTTAAGGAAGAGAGAGAAA+AGG 0.419665 7_1:-17474835 None:intergenic
CTGGTGAAGCATTGTTCCTC+GGG 0.421661 7_1:+17478340 Msa1012430:CDS
TAAATATATCCCGCCATTTG+AGG 0.424847 7_1:+17479193 Msa1012430:CDS
GTGAACACAGCCTGTAGAAC+AGG 0.424853 7_1:-17477654 None:intergenic
GAGTTGCATCTGTACAGAAC+AGG 0.440421 7_1:+17479410 Msa1012430:CDS
CCGGAAGTTGTCGACCTAGT+TGG 0.441959 7_1:+17477570 Msa1012430:CDS
GAAAAGAAGGACCAGAATCA+TGG 0.454156 7_1:-17475108 None:intergenic
ATCGTTGTATTCTCCCAAAA+GGG 0.454733 7_1:+17479228 Msa1012430:CDS
TCGGTGATTTCATAAACTTT+GGG 0.454996 7_1:-17479332 None:intergenic
TTCCCATCTTTATACACATC+AGG 0.456949 7_1:-17476047 None:intergenic
TTGTACTTCATCCCGATTAG+TGG 0.459096 7_1:+17479587 Msa1012430:three_prime_UTR
GAAGGTTAAACCTGTTCTAC+AGG 0.460116 7_1:+17477644 Msa1012430:CDS
AACCGCATGCTTATTTATCC+GGG 0.461885 7_1:+17478370 Msa1012430:CDS
CCTTATGCTGAACTTTGGAT+TGG 0.462431 7_1:+17475082 Msa1012430:CDS
CATGTATTAGGTGCTATCTG+TGG 0.466843 7_1:+17475959 Msa1012430:intron
ATGGACGGACCTGGAACAGC+CGG 0.468574 7_1:-17479266 None:intergenic
GTTCTTCTTTCTTACACAAA+GGG 0.471658 7_1:+17474647 Msa1012430:five_prime_UTR
TGGTGCTGCAAATGCAAATC+TGG 0.472964 7_1:+17477590 Msa1012430:CDS
ATGTATTAGGTGCTATCTGT+GGG 0.477009 7_1:+17475960 Msa1012430:intron
CATCCTGATGTGTATAAAGA+TGG 0.480890 7_1:+17476044 Msa1012430:CDS
TGGTACTGAACCCACTAATC+GGG 0.485125 7_1:-17479598 None:intergenic
GATTGCAGAAGAAATGGAAA+AGG 0.485508 7_1:-17474798 None:intergenic
GTCATTGCAAGAGCCATCTC+AGG 0.487041 7_1:-17476077 None:intergenic
TATGAATTTGGGAGTTAGGC+CGG 0.490147 7_1:-17478436 None:intergenic
AATTACGATTGGGGTTTACC+TGG 0.492223 7_1:+17474995 Msa1012430:CDS
CCTGGTGAAGCATTGTTCCT+CGG 0.492483 7_1:+17478339 Msa1012430:CDS
CAAGACTCTTAAGCATTCAA+AGG 0.501223 7_1:+17479452 Msa1012430:exon
TCCTAGCCAACTCCTTATCT+GGG 0.501884 7_1:-17476007 None:intergenic
CTCTTTCAATCTTCTTACAA+TGG 0.502557 7_1:+17474922 Msa1012430:exon
TCGATCTCGAATTCCTCAAA+TGG 0.502838 7_1:-17479206 None:intergenic
TATGGAAAAGAAGAGTACTT+AGG 0.503711 7_1:+17479521 Msa1012430:three_prime_UTR
GATCGTTGTATTCTCCCAAA+AGG 0.504887 7_1:+17479227 Msa1012430:CDS
TTTACCTGGTCAATTGTCAC+AGG 0.505143 7_1:+17475009 Msa1012430:CDS
CCAATCCAAAGTTCAGCATA+AGG 0.505779 7_1:-17475082 None:intergenic
GGTGAGGCATTTGACAGAAA+AGG 0.512954 7_1:+17478230 Msa1012430:intron
ACGCTAATCTCTGTGTAAGC+AGG 0.519438 7_1:-17479374 None:intergenic
GTTCTGTTAAGAATTACGAT+TGG 0.521470 7_1:+17474984 Msa1012430:CDS
TCACATACCTTAAACAAGAA+AGG 0.521871 7_1:-17475238 None:intergenic
TCATCAGAAACAAGAAAAGA+AGG 0.521989 7_1:-17475121 None:intergenic
AGCGAAAAGAGCATCACCTT+CGG 0.522693 7_1:-17479351 None:intergenic
CACCAGGATTGAGTTTCACA+TGG 0.523571 7_1:-17478323 None:intergenic
TTGCATTTGCAGCACCAACT+AGG 0.525377 7_1:-17477584 None:intergenic
TTCTGATGATGATGGACAAA+GGG 0.529434 7_1:+17475135 Msa1012430:CDS
GGAGCTGTTGGTGCTGCGAT+TGG 0.529500 7_1:+17478251 Msa1012430:CDS
TTCCATGCTCACATACAAGC+AGG 0.540703 7_1:+17478476 Msa1012430:CDS
TATCAATCTGTTCACAGCAT+AGG 0.542513 7_1:-17477709 None:intergenic
TTTGACAGAAAAGGAGCTGT+TGG 0.543234 7_1:+17478239 Msa1012430:CDS
CCGAGGAACAATGCTTCACC+AGG 0.545757 7_1:-17478339 None:intergenic
TGTGTTCATCGATCCTTCCC+CGG 0.546008 7_1:-17479303 None:intergenic
TATACAAGCTCACCCAGATA+AGG 0.548295 7_1:+17475995 Msa1012430:CDS
AAGTTTCTGAAGTGAATTGT+GGG 0.552930 7_1:-17474957 None:intergenic
TCTCGAATTCCTCAAATGGC+GGG 0.554372 7_1:-17479202 None:intergenic
TTAGGTGCTATCTGTGGGGA+AGG 0.554929 7_1:+17475965 Msa1012430:intron
TGGGAATCATAAACCTGAGA+TGG 0.555786 7_1:+17476064 Msa1012430:CDS
CGGGGAGTGTATTGAATGCA+TGG 0.556667 7_1:+17478389 Msa1012430:CDS
AACCATGTGAAACTCAATCC+TGG 0.557868 7_1:+17478321 Msa1012430:CDS
CATAAAGTTGTTAACAAATG+GGG 0.561333 7_1:+17475205 Msa1012430:CDS
TATGACCAAGCAACAAATCA+GGG 0.561583 7_1:-17475186 None:intergenic
TTCAAAGGTGGAAGAGCTTG+TGG 0.562168 7_1:+17479467 Msa1012430:three_prime_UTR
TACCTGCTTGTATGTGAGCA+TGG 0.563027 7_1:-17478478 None:intergenic
AAAAGAAGGACCAGAATCAT+GGG 0.564262 7_1:-17475107 None:intergenic
GGTTCTTCTTTCTTACACAA+AGG 0.565650 7_1:+17474646 Msa1012430:five_prime_UTR
GCAATCACACCAATATCGGA+TGG 0.570657 7_1:-17478285 None:intergenic
TGTACTTCATCCCGATTAGT+GGG 0.573043 7_1:+17479588 Msa1012430:three_prime_UTR
ACCCAGATAAGGAGTTGGCT+AGG 0.574603 7_1:+17476006 Msa1012430:CDS
GACTCTTAAGCATTCAAAGG+TGG 0.575143 7_1:+17479455 Msa1012430:exon
TGATCAGAATGGTGAAGAGA+AGG 0.578017 7_1:+17477626 Msa1012430:CDS
TCTGACAATGTTGTGCGAGC+CGG 0.584140 7_1:+17478417 Msa1012430:CDS
CATGCATTCAATACACTCCC+CGG 0.594196 7_1:-17478388 None:intergenic
AGAAGAAATGGAAAAGGAAA+CGG 0.594376 7_1:-17474792 None:intergenic
GAAGTTTCTGAAGTGAATTG+TGG 0.595226 7_1:-17474958 None:intergenic
ATCTCGAATTCCTCAAATGG+CGG 0.596472 7_1:-17479203 None:intergenic
ATTGATAAATCGACTGCATG+AGG 0.598903 7_1:+17477725 Msa1012430:CDS
TGGACGGACCTGGAACAGCC+GGG 0.599936 7_1:-17479265 None:intergenic
AGCTCACCCAGATAAGGAGT+TGG 0.600443 7_1:+17476001 Msa1012430:CDS
GCAACCTGTGACAATTGACC+AGG 0.605256 7_1:-17475013 None:intergenic
CAATCACACCAATATCGGAT+GGG 0.611100 7_1:-17478284 None:intergenic
TTATCTAATCTTGTTGAACA+CGG 0.613308 7_1:-17474687 None:intergenic
TGTTCTGTACAGATGCAACT+CGG 0.623652 7_1:-17479408 None:intergenic
TCGACTGCATGAGGAAAGTG+AGG 0.627796 7_1:+17477734 Msa1012430:CDS
TTTCTGATGATGATGGACAA+AGG 0.639421 7_1:+17475134 Msa1012430:CDS
AGAAATGGAAAAGGAAACGG+TGG 0.642298 7_1:-17474789 None:intergenic
AAAGTTTATGAAATCACCGA+AGG 0.643879 7_1:+17479335 Msa1012430:CDS
TCGTTGTATTCTCCCAAAAG+GGG 0.650658 7_1:+17479229 Msa1012430:CDS
ACCGCATGCTTATTTATCCG+GGG 0.651731 7_1:+17478371 Msa1012430:CDS
AGTTGCATCTGTACAGAACA+GGG 0.662530 7_1:+17479411 Msa1012430:CDS
TTAGAAACTAGTGATCAGAA+TGG 0.664033 7_1:+17477615 Msa1012430:CDS
GTGAGCATGGAACAAAGAGT+CGG 0.664307 7_1:-17478465 None:intergenic
GGGGAAGGATCGATGAACAC+AGG 0.664529 7_1:+17479305 Msa1012430:CDS
ATCCTGATGTGTATAAAGAT+GGG 0.669111 7_1:+17476045 Msa1012430:CDS
TCTCCCAAAAGGGGAAACAG+TGG 0.677647 7_1:+17479238 Msa1012430:CDS
CATGCGGTTCATTCGCCCCG+AGG 0.682048 7_1:-17478356 None:intergenic
TCCCCGGATAAATAAGCATG+CGG 0.684201 7_1:-17478372 None:intergenic
TCTGTTAAGAATTACGATTG+GGG 0.690814 7_1:+17474986 Msa1012430:CDS
AGTTTCTGAAGTGAATTGTG+GGG 0.698513 7_1:-17474956 None:intergenic
TGGTGAAGCATTGTTCCTCG+GGG 0.705943 7_1:+17478341 Msa1012430:CDS
AAAGGTGGAAGAGCTTGTGG+AGG 0.712969 7_1:+17479470 Msa1012430:three_prime_UTR
TGTATTAGGTGCTATCTGTG+GGG 0.728182 7_1:+17475961 Msa1012430:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTATTTTTTATTATTTT+TGG + chr7_1:17479702-17479721 Msa1012430:three_prime_UTR 0.0%
!!! TTTTTTTAATGTTTTTTTGT+TGG + chr7_1:17475280-17475299 Msa1012430:intron 10.0%
!!! ACAAAAATTATTAATTTTCT+TGG - chr7_1:17476910-17476929 None:intergenic 10.0%
!! AAATGCAAATAAATAAAAAT+AGG + chr7_1:17477067-17477086 Msa1012430:intron 10.0%
!!! CTAATTTTCAACTTATAATA+AGG - chr7_1:17476324-17476343 None:intergenic 15.0%
!!! CTTATTATAAGTTGAAAATT+AGG + chr7_1:17476322-17476341 Msa1012430:intron 15.0%
!! TTGTTATAAAGTAAAATATG+TGG + chr7_1:17476707-17476726 Msa1012430:intron 15.0%
!! ATGCAATAAGAAATAATTAA+GGG - chr7_1:17476970-17476989 None:intergenic 15.0%
!! AATGCAATAAGAAATAATTA+AGG - chr7_1:17476971-17476990 None:intergenic 15.0%
!!! TTTTTTAAACTTGTAGAATA+AGG + chr7_1:17477421-17477440 Msa1012430:intron 15.0%
!!! TTTCTGTTTTTTTTCTATTT+AGG + chr7_1:17477521-17477540 Msa1012430:intron 15.0%
!! ATTCTAATAATTGAACTTTA+GGG - chr7_1:17478751-17478770 None:intergenic 15.0%
!! AATTCTAATAATTGAACTTT+AGG - chr7_1:17478752-17478771 None:intergenic 15.0%
!! TCATAAAGTTGTTAACAAAT+GGG + chr7_1:17475204-17475223 Msa1012430:CDS 20.0%
!!! GTTGTTTAGTTTTTATGAAA+AGG + chr7_1:17475429-17475448 Msa1012430:intron 20.0%
!! ATTTAAACAAAGAAATCCAA+GGG - chr7_1:17475663-17475682 None:intergenic 20.0%
!!! TTGGATTTCTTTGTTTAAAT+GGG + chr7_1:17475663-17475682 Msa1012430:intron 20.0%
!! GTTGTATATAGTTTATGAAA+AGG + chr7_1:17475915-17475934 Msa1012430:intron 20.0%
!! TATATAGTTTATGAAAAGGT+TGG + chr7_1:17475919-17475938 Msa1012430:intron 20.0%
!!! ATTATAAGTTGAAAATTAGG+TGG + chr7_1:17476325-17476344 Msa1012430:intron 20.0%
!!! TTATTACAGATCTTTTTGTT+TGG + chr7_1:17476751-17476770 Msa1012430:intron 20.0%
!!! TTTGAGAATAAGTTTTTCTT+CGG + chr7_1:17476815-17476834 Msa1012430:intron 20.0%
!! CAATAAAACGACAAATAAAA+AGG - chr7_1:17476874-17476893 None:intergenic 20.0%
!! ATAATACCCTTAACTATTTA+TGG - chr7_1:17477011-17477030 None:intergenic 20.0%
!! ATTTAGTTAACTCAAAAGTT+CGG + chr7_1:17477217-17477236 Msa1012430:intron 20.0%
!! TACAATAAATCAGTAAAAGA+TGG - chr7_1:17477473-17477492 None:intergenic 20.0%
!! TTATTGTAATGTTATTCTCT+TGG + chr7_1:17477485-17477504 Msa1012430:intron 20.0%
!!! TGAATAGACTCTTAATTTTA+TGG + chr7_1:17478089-17478108 Msa1012430:intron 20.0%
!!! AACTATTGATTTCATAATAG+TGG - chr7_1:17478131-17478150 None:intergenic 20.0%
!!! ACTTTTATAACACACATTAA+TGG + chr7_1:17478532-17478551 Msa1012430:intron 20.0%
!! GATTAAACACATATTTATCA+TGG + chr7_1:17479040-17479059 Msa1012430:intron 20.0%
!! GGGATATATTTATTTACATA+TGG - chr7_1:17479185-17479204 None:intergenic 20.0%
!! AGGAAATAAAAAGAAATTCT+TGG + chr7_1:17479490-17479509 Msa1012430:three_prime_UTR 20.0%
!! TAAAAAGAAATTCTTGGATT+TGG + chr7_1:17479496-17479515 Msa1012430:three_prime_UTR 20.0%
!!! TATAATTTTATTCGCAAACA+TGG - chr7_1:17479637-17479656 None:intergenic 20.0%
! TTATCTAATCTTGTTGAACA+CGG - chr7_1:17474690-17474709 None:intergenic 25.0%
!!! TTTTTTGTGGATTCTTGTTT+GGG - chr7_1:17474716-17474735 None:intergenic 25.0%
!!! TGAAGATAATCACTTTTTTG+TGG - chr7_1:17474729-17474748 None:intergenic 25.0%
!!! TGGTATTTGAAGAGTATTTA+AGG - chr7_1:17474853-17474872 None:intergenic 25.0%
! TGAAAGAGATTGTTGAAAAT+GGG - chr7_1:17474910-17474929 None:intergenic 25.0%
! TTGAAAGAGATTGTTGAAAA+TGG - chr7_1:17474911-17474930 None:intergenic 25.0%
! TTCTGTTAAGAATTACGATT+GGG + chr7_1:17474985-17475004 Msa1012430:CDS 25.0%
! GTCATAAAGTTGTTAACAAA+TGG + chr7_1:17475203-17475222 Msa1012430:CDS 25.0%
! CATAAAGTTGTTAACAAATG+GGG + chr7_1:17475205-17475224 Msa1012430:CDS 25.0%
!!! TATGTGATTTTGATTACTAG+TGG + chr7_1:17475254-17475273 Msa1012430:intron 25.0%
!! TTTGTTGGTTACTATGTAAT+TGG + chr7_1:17475295-17475314 Msa1012430:intron 25.0%
! AATTGGTGTGAAATATTCAT+TGG + chr7_1:17475312-17475331 Msa1012430:intron 25.0%
! CATTTAAACAAAGAAATCCA+AGG - chr7_1:17475664-17475683 None:intergenic 25.0%
!! CTTGGATTTCTTTGTTTAAA+TGG + chr7_1:17475662-17475681 Msa1012430:intron 25.0%
!!! TCTGTTGTTTTTCATGTATT+AGG + chr7_1:17475947-17475966 Msa1012430:intron 25.0%
! GGTAGTATTTAATTATTCTG+TGG + chr7_1:17476136-17476155 Msa1012430:intron 25.0%
! TATTATGAGAATAACTGAAC+TGG + chr7_1:17476192-17476211 Msa1012430:intron 25.0%
! ATTGTTAGTTAGAATATCAC+TGG - chr7_1:17476624-17476643 None:intergenic 25.0%
!! AATTTGAAATGATAACCCTT+TGG + chr7_1:17476666-17476685 Msa1012430:intron 25.0%
!! TTGAGAATAAGTTTTTCTTC+GGG + chr7_1:17476816-17476835 Msa1012430:intron 25.0%
!! ACTTATTTGAGATTATCTAC+TGG - chr7_1:17478064-17478083 None:intergenic 25.0%
! AATGTGTGTTATAAAAGTTG+CGG - chr7_1:17478530-17478549 None:intergenic 25.0%
!!! TCAAATTTTAAAACCACGTA+TGG + chr7_1:17478624-17478643 Msa1012430:intron 25.0%
!! AAGACTGAAATAAGTTCTAA+CGG - chr7_1:17478777-17478796 None:intergenic 25.0%
! TCTTCCTTTGAATTTCATAT+TGG + chr7_1:17478832-17478851 Msa1012430:intron 25.0%
! ATGACCAATATGAAATTCAA+AGG - chr7_1:17478839-17478858 None:intergenic 25.0%
! TTTGAATTTCATATTGGTCA+TGG + chr7_1:17478838-17478857 Msa1012430:intron 25.0%
! GATTCATCTTTATTGAGATT+TGG + chr7_1:17478860-17478879 Msa1012430:intron 25.0%
! TGCAAAAAAAACAGAACAAA+AGG - chr7_1:17478888-17478907 None:intergenic 25.0%
! TGTGATATTAACTCAATTGT+AGG + chr7_1:17478969-17478988 Msa1012430:intron 25.0%
! ATGCATAACCATATACTATT+TGG + chr7_1:17478999-17479018 Msa1012430:intron 25.0%
!!! AAATTCTCTTATTTTCTCAC+AGG + chr7_1:17479124-17479143 Msa1012430:intron 25.0%
!!! AATTCTCTTATTTTCTCACA+GGG + chr7_1:17479125-17479144 Msa1012430:intron 25.0%
!! AAATTCTTGGATTTGGTTTA+TGG + chr7_1:17479503-17479522 Msa1012430:three_prime_UTR 25.0%
GTTCTTCTTTCTTACACAAA+GGG + chr7_1:17474647-17474666 Msa1012430:five_prime_UTR 30.0%
!!! CTTTTTTGTGGATTCTTGTT+TGG - chr7_1:17474717-17474736 None:intergenic 30.0%
AGAAGAAATGGAAAAGGAAA+CGG - chr7_1:17474795-17474814 None:intergenic 30.0%
TTTAAGGAAGAGAGAGAAAA+GGG - chr7_1:17474837-17474856 None:intergenic 30.0%
ATTTAAGGAAGAGAGAGAAA+AGG - chr7_1:17474838-17474857 None:intergenic 30.0%
CTCTTTCAATCTTCTTACAA+TGG + chr7_1:17474922-17474941 Msa1012430:exon 30.0%
!! AAGTTTCTGAAGTGAATTGT+GGG - chr7_1:17474960-17474979 None:intergenic 30.0%
GTTCTGTTAAGAATTACGAT+TGG + chr7_1:17474984-17475003 Msa1012430:CDS 30.0%
TCTGTTAAGAATTACGATTG+GGG + chr7_1:17474986-17475005 Msa1012430:CDS 30.0%
TCATCAGAAACAAGAAAAGA+AGG - chr7_1:17475124-17475143 None:intergenic 30.0%
!! TTTCTTGTTTCTGATGATGA+TGG + chr7_1:17475127-17475146 Msa1012430:CDS 30.0%
!! AAAGGGTTAGTCTTAAAGAT+TGG + chr7_1:17475152-17475171 Msa1012430:CDS 30.0%
! TGATCTACCTTTCTTGTTTA+AGG + chr7_1:17475231-17475250 Msa1012430:CDS 30.0%
TCACATACCTTAAACAAGAA+AGG - chr7_1:17475241-17475260 None:intergenic 30.0%
!! TGTTGATAACTAATCTGTGT+CGG + chr7_1:17475338-17475357 Msa1012430:intron 30.0%
!!! GGTGTTTAGTTTTACGAAAA+AGG + chr7_1:17475684-17475703 Msa1012430:intron 30.0%
TCAATACAAACATAGACATC+AGG - chr7_1:17475848-17475867 None:intergenic 30.0%
! TGTTTGTATTGATGCTTCAT+AGG + chr7_1:17475856-17475875 Msa1012430:intron 30.0%
ATCCTGATGTGTATAAAGAT+GGG + chr7_1:17476045-17476064 Msa1012430:CDS 30.0%
TTGTGGATTTATCACTCTTA+AGG + chr7_1:17476115-17476134 Msa1012430:CDS 30.0%
AAGGAATTATACCTAACAGA+TGG - chr7_1:17476495-17476514 None:intergenic 30.0%
TTCACTCAGTCATATCATTA+AGG - chr7_1:17476514-17476533 None:intergenic 30.0%
GGTTGTATTGTATCAGAAAA+AGG - chr7_1:17476603-17476622 None:intergenic 30.0%
! TGAGAATAAGTTTTTCTTCG+GGG + chr7_1:17476817-17476836 Msa1012430:intron 30.0%
! ATTTTCTTGGTACACGTAAA+TGG - chr7_1:17476897-17476916 None:intergenic 30.0%
TCTCTGCCATAAATAGTTAA+GGG + chr7_1:17477002-17477021 Msa1012430:intron 30.0%
TACCTAAACAACTGCTAAAA+AGG + chr7_1:17477097-17477116 Msa1012430:intron 30.0%
!! TTCCTTTTTAGCAGTTGTTT+AGG - chr7_1:17477102-17477121 None:intergenic 30.0%
AACTGCTAAAAAGGAACATA+GGG + chr7_1:17477106-17477125 Msa1012430:intron 30.0%
CATGACGTGTCTTTATTAAA+AGG + chr7_1:17477153-17477172 Msa1012430:intron 30.0%
TAACTCAAAAGTTCGGATTT+CGG + chr7_1:17477224-17477243 Msa1012430:intron 30.0%
ACAAGTTAAGACAATGCAAT+CGG - chr7_1:17477309-17477328 None:intergenic 30.0%
AAGATGGTTGAATATACCAA+AGG - chr7_1:17477457-17477476 None:intergenic 30.0%
TTAGAAACTAGTGATCAGAA+TGG + chr7_1:17477615-17477634 Msa1012430:CDS 30.0%
AGTTGATTACTTAATCCGTT+TGG + chr7_1:17477759-17477778 Msa1012430:intron 30.0%
CCAAACTCTTAAAAACCAAA+CGG - chr7_1:17477777-17477796 None:intergenic 30.0%
CATAAGCTAAAATCAGTTGA+TGG + chr7_1:17477985-17478004 Msa1012430:intron 30.0%
! TAATGTTCTCATTTTGCATC+AGG + chr7_1:17478209-17478228 Msa1012430:intron 30.0%
ATATGATAAGCACTTATGCA+AGG - chr7_1:17478558-17478577 None:intergenic 30.0%
TGTTCATGCCAAATAGTATA+TGG - chr7_1:17479010-17479029 None:intergenic 30.0%
TCATGGTTTCAAAATTTCGA+CGG + chr7_1:17479057-17479076 Msa1012430:intron 30.0%
CCTATTACGATTCATTTCAA+AGG - chr7_1:17479092-17479111 None:intergenic 30.0%
!! CCTTTGAAATGAATCGTAAT+AGG + chr7_1:17479089-17479108 Msa1012430:intron 30.0%
TCGGTGATTTCATAAACTTT+GGG - chr7_1:17479335-17479354 None:intergenic 30.0%
TTCGGTGATTTCATAAACTT+TGG - chr7_1:17479336-17479355 None:intergenic 30.0%
AAAGTTTATGAAATCACCGA+AGG + chr7_1:17479335-17479354 Msa1012430:CDS 30.0%
!! TATGGAAAAGAAGAGTACTT+AGG + chr7_1:17479521-17479540 Msa1012430:three_prime_UTR 30.0%
! AACATGGAAAAAAGTGCAAA+TGG - chr7_1:17479621-17479640 None:intergenic 30.0%
GGTTCTTCTTTCTTACACAA+AGG + chr7_1:17474646-17474665 Msa1012430:five_prime_UTR 35.0%
GATTGCAGAAGAAATGGAAA+AGG - chr7_1:17474801-17474820 None:intergenic 35.0%
GAGAAAGATTGCAGAAGAAA+TGG - chr7_1:17474807-17474826 None:intergenic 35.0%
GAGAATTGAGATTGAGTCAT+TGG - chr7_1:17474873-17474892 None:intergenic 35.0%
!! AGTTTCTGAAGTGAATTGTG+GGG - chr7_1:17474959-17474978 None:intergenic 35.0%
!! GAAGTTTCTGAAGTGAATTG+TGG - chr7_1:17474961-17474980 None:intergenic 35.0%
AAGCTTTCTGAGCTTAATTC+TGG + chr7_1:17475037-17475056 Msa1012430:CDS 35.0%
AGCTTTCTGAGCTTAATTCT+GGG + chr7_1:17475038-17475057 Msa1012430:CDS 35.0%
AAAAGAAGGACCAGAATCAT+GGG - chr7_1:17475110-17475129 None:intergenic 35.0%
!! TTTCTGATGATGATGGACAA+AGG + chr7_1:17475134-17475153 Msa1012430:CDS 35.0%
!! TTCTGATGATGATGGACAAA+GGG + chr7_1:17475135-17475154 Msa1012430:CDS 35.0%
TATGACCAAGCAACAAATCA+GGG - chr7_1:17475189-17475208 None:intergenic 35.0%
TTATGACCAAGCAACAAATC+AGG - chr7_1:17475190-17475209 None:intergenic 35.0%
!! GTTGATAACTAATCTGTGTC+GGG + chr7_1:17475339-17475358 Msa1012430:intron 35.0%
! TTGATAACTAATCTGTGTCG+GGG + chr7_1:17475340-17475359 Msa1012430:intron 35.0%
! ACATTGGTCTGAGCAAAATT+GGG - chr7_1:17475372-17475391 None:intergenic 35.0%
! ATGTATTAGGTGCTATCTGT+GGG + chr7_1:17475960-17475979 Msa1012430:intron 35.0%
CATCCTGATGTGTATAAAGA+TGG + chr7_1:17476044-17476063 Msa1012430:CDS 35.0%
TTCCCATCTTTATACACATC+AGG - chr7_1:17476050-17476069 None:intergenic 35.0%
! TCTTGCAATGACAGATTTTG+AGG + chr7_1:17476088-17476107 Msa1012430:CDS 35.0%
TCAATACTCATGAGTGTGAT+TGG + chr7_1:17476463-17476482 Msa1012430:intron 35.0%
GTTGCTTCATTAACTCCAAA+GGG - chr7_1:17476684-17476703 None:intergenic 35.0%
AGTTGCTTCATTAACTCCAA+AGG - chr7_1:17476685-17476704 None:intergenic 35.0%
AAAGCAGCAGAACTTCAATT+TGG - chr7_1:17476782-17476801 None:intergenic 35.0%
! GAGAATAAGTTTTTCTTCGG+GGG + chr7_1:17476818-17476837 Msa1012430:intron 35.0%
CTCTCTGCCATAAATAGTTA+AGG + chr7_1:17477001-17477020 Msa1012430:intron 35.0%
CAACTGCTAAAAAGGAACAT+AGG + chr7_1:17477105-17477124 Msa1012430:intron 35.0%
AGAATGACAGAAATGAACCA+TGG - chr7_1:17477256-17477275 None:intergenic 35.0%
ATTTCTGTCATTCTCCAAGA+CGG + chr7_1:17477262-17477281 Msa1012430:intron 35.0%
CAAGTTAAGACAATGCAATC+GGG - chr7_1:17477308-17477327 None:intergenic 35.0%
TCGACCAAAAAAGACTGTTT+AGG - chr7_1:17477368-17477387 None:intergenic 35.0%
ATAAGGTTAGAGCTTACCTT+TGG + chr7_1:17477438-17477457 Msa1012430:intron 35.0%
TATCAATCTGTTCACAGCAT+AGG - chr7_1:17477712-17477731 None:intergenic 35.0%
ATTGATAAATCGACTGCATG+AGG + chr7_1:17477725-17477744 Msa1012430:CDS 35.0%
!!! CCGTTTGGTTTTTAAGAGTT+TGG + chr7_1:17477774-17477793 Msa1012430:intron 35.0%
ACTAACATTACGAGACAAGA+AGG - chr7_1:17477833-17477852 None:intergenic 35.0%
AATGTTAGTTACGATGTACG+TGG + chr7_1:17477844-17477863 Msa1012430:intron 35.0%
TGAAGTCGTTTATCCAAACA+AGG - chr7_1:17477877-17477896 None:intergenic 35.0%
GTTTCTCCATATTGTGTGTT+AGG + chr7_1:17478166-17478185 Msa1012430:intron 35.0%
CATCTACCTAACACACAATA+TGG - chr7_1:17478175-17478194 None:intergenic 35.0%
AATCAATACCCATCCGATAT+TGG + chr7_1:17478276-17478295 Msa1012430:CDS 35.0%
CATCTATGAATTTGGGAGTT+AGG - chr7_1:17478443-17478462 None:intergenic 35.0%
TACACCTGATTACTATGCTA+AGG + chr7_1:17478796-17478815 Msa1012430:intron 35.0%
CAAAATTTCGACGGAATACA+TGG + chr7_1:17479066-17479085 Msa1012430:intron 35.0%
TAAATATATCCCGCCATTTG+AGG + chr7_1:17479193-17479212 Msa1012430:CDS 35.0%
ATCGTTGTATTCTCCCAAAA+GGG + chr7_1:17479228-17479247 Msa1012430:CDS 35.0%
CAAGACTCTTAAGCATTCAA+AGG + chr7_1:17479452-17479471 Msa1012430:exon 35.0%
!!! TAGGTAGTTTTCGAGTTCTT+TGG + chr7_1:17479549-17479568 Msa1012430:three_prime_UTR 35.0%
!!! TAGTTTTCGAGTTCTTTGGT+GGG + chr7_1:17479553-17479572 Msa1012430:three_prime_UTR 35.0%
AGAAATGGAAAAGGAAACGG+TGG - chr7_1:17474792-17474811 None:intergenic 40.0%
AATTACGATTGGGGTTTACC+TGG + chr7_1:17474995-17475014 Msa1012430:CDS 40.0%
TTTACCTGGTCAATTGTCAC+AGG + chr7_1:17475009-17475028 Msa1012430:CDS 40.0%
AGTTCAGCATAAGGCTTCAT+TGG - chr7_1:17475076-17475095 None:intergenic 40.0%
! TGAAGCCTTATGCTGAACTT+TGG + chr7_1:17475077-17475096 Msa1012430:CDS 40.0%
CCAATCCAAAGTTCAGCATA+AGG - chr7_1:17475085-17475104 None:intergenic 40.0%
CCTTATGCTGAACTTTGGAT+TGG + chr7_1:17475082-17475101 Msa1012430:CDS 40.0%
GAAAAGAAGGACCAGAATCA+TGG - chr7_1:17475111-17475130 None:intergenic 40.0%
!! GATAACCCTGATTTGTTGCT+TGG + chr7_1:17475181-17475200 Msa1012430:CDS 40.0%
TGATAACTAATCTGTGTCGG+GGG + chr7_1:17475341-17475360 Msa1012430:intron 40.0%
! CACATTGGTCTGAGCAAAAT+TGG - chr7_1:17475373-17475392 None:intergenic 40.0%
!! AAGGGTATCCAACATCACAT+TGG - chr7_1:17475388-17475407 None:intergenic 40.0%
ACACCTTCAACCTCAAATGT+CGG - chr7_1:17475485-17475504 None:intergenic 40.0%
GTGTCTAACACAGTCATTGT+TGG + chr7_1:17475523-17475542 Msa1012430:intron 40.0%
TGTATCCGTGCTTCTTATGA+TGG + chr7_1:17475631-17475650 Msa1012430:intron 40.0%
GTATCCGTGCTTCTTATGAT+GGG + chr7_1:17475632-17475651 Msa1012430:intron 40.0%
TATCCGTGCTTCTTATGATG+GGG + chr7_1:17475633-17475652 Msa1012430:intron 40.0%
GTTCTTGTCTAACAAGACAC+TGG + chr7_1:17475763-17475782 Msa1012430:intron 40.0%
! CATGTATTAGGTGCTATCTG+TGG + chr7_1:17475959-17475978 Msa1012430:intron 40.0%
! TGTATTAGGTGCTATCTGTG+GGG + chr7_1:17475961-17475980 Msa1012430:intron 40.0%
TATACAAGCTCACCCAGATA+AGG + chr7_1:17475995-17476014 Msa1012430:CDS 40.0%
TGGGAATCATAAACCTGAGA+TGG + chr7_1:17476064-17476083 Msa1012430:CDS 40.0%
!!! ACAGATTTTGAGGCTCTTTG+TGG + chr7_1:17476098-17476117 Msa1012430:CDS 40.0%
ATTGGAACTGTCCATCTGTT+AGG + chr7_1:17476481-17476500 Msa1012430:intron 40.0%
CATGTCAATCTCATTCTCTC+TGG + chr7_1:17476564-17476583 Msa1012430:intron 40.0%
!! AGTTCTGCTGCTTTAGTTTG+AGG + chr7_1:17476788-17476807 Msa1012430:intron 40.0%
TAAAGACACGTCATGTAGAG+AGG - chr7_1:17477148-17477167 None:intergenic 40.0%
TTTCTGTCATTCTCCAAGAC+GGG + chr7_1:17477263-17477282 Msa1012430:intron 40.0%
GCAGTATTAAAATCCCGTCT+TGG - chr7_1:17477279-17477298 None:intergenic 40.0%
!!! GTCGCCTAAACAGTCTTTTT+TGG + chr7_1:17477361-17477380 Msa1012430:intron 40.0%
AGCTGTGATTCATACTGTTC+CGG + chr7_1:17477551-17477570 Msa1012430:CDS 40.0%
TGATCAGAATGGTGAAGAGA+AGG + chr7_1:17477626-17477645 Msa1012430:CDS 40.0%
GAAGGTTAAACCTGTTCTAC+AGG + chr7_1:17477644-17477663 Msa1012430:CDS 40.0%
! AGAGTGTTTAGGAGAGCTTA+TGG - chr7_1:17478027-17478046 None:intergenic 40.0%
! TTCTCATTTTGCATCAGGTG+AGG + chr7_1:17478214-17478233 Msa1012430:intron 40.0%
TTTGACAGAAAAGGAGCTGT+TGG + chr7_1:17478239-17478258 Msa1012430:CDS 40.0%
CAATCACACCAATATCGGAT+GGG - chr7_1:17478287-17478306 None:intergenic 40.0%
AGCTGCAATCACACCAATAT+CGG - chr7_1:17478292-17478311 None:intergenic 40.0%
AACCATGTGAAACTCAATCC+TGG + chr7_1:17478321-17478340 Msa1012430:CDS 40.0%
GAACCGCATGCTTATTTATC+CGG + chr7_1:17478369-17478388 Msa1012430:CDS 40.0%
AACCGCATGCTTATTTATCC+GGG + chr7_1:17478370-17478389 Msa1012430:CDS 40.0%
TATGAATTTGGGAGTTAGGC+CGG - chr7_1:17478439-17478458 None:intergenic 40.0%
GTCGGCACATCTATGAATTT+GGG - chr7_1:17478450-17478469 None:intergenic 40.0%
AGTCGGCACATCTATGAATT+TGG - chr7_1:17478451-17478470 None:intergenic 40.0%
CATGCCTTAGCATAGTAATC+AGG - chr7_1:17478803-17478822 None:intergenic 40.0%
AACCAACCAAGCAATCTATG+TGG - chr7_1:17478928-17478947 None:intergenic 40.0%
ACATAGATTGCTTGGTTGGT+TGG + chr7_1:17478927-17478946 Msa1012430:intron 40.0%
ATCTCGAATTCCTCAAATGG+CGG - chr7_1:17479206-17479225 None:intergenic 40.0%
TCGATCTCGAATTCCTCAAA+TGG - chr7_1:17479209-17479228 None:intergenic 40.0%
GATCGTTGTATTCTCCCAAA+AGG + chr7_1:17479227-17479246 Msa1012430:CDS 40.0%
TCGTTGTATTCTCCCAAAAG+GGG + chr7_1:17479229-17479248 Msa1012430:CDS 40.0%
GATGTGACCAAAAAGATGGA+CGG - chr7_1:17479284-17479303 None:intergenic 40.0%
!! TCCATCTTTTTGGTCACATC+CGG + chr7_1:17479284-17479303 Msa1012430:CDS 40.0%
TGTTCTGTACAGATGCAACT+CGG - chr7_1:17479411-17479430 None:intergenic 40.0%
AGTTGCATCTGTACAGAACA+GGG + chr7_1:17479411-17479430 Msa1012430:CDS 40.0%
GACTCTTAAGCATTCAAAGG+TGG + chr7_1:17479455-17479474 Msa1012430:exon 40.0%
!! GAAGAGTACTTAGGTAGCTT+AGG + chr7_1:17479530-17479549 Msa1012430:three_prime_UTR 40.0%
!!! GTAGTTTTCGAGTTCTTTGG+TGG + chr7_1:17479552-17479571 Msa1012430:three_prime_UTR 40.0%
TTGTACTTCATCCCGATTAG+TGG + chr7_1:17479587-17479606 Msa1012430:three_prime_UTR 40.0%
TGTACTTCATCCCGATTAGT+GGG + chr7_1:17479588-17479607 Msa1012430:three_prime_UTR 40.0%
! ATGGTACTGAACCCACTAAT+CGG - chr7_1:17479602-17479621 None:intergenic 40.0%
!! TGGATTGGTACCCATGATTC+TGG + chr7_1:17475097-17475116 Msa1012430:CDS 45.0%
TGCTCAGACCAATGTGATGT+TGG + chr7_1:17475377-17475396 Msa1012430:intron 45.0%
!! CTATGTAGCACCGACATTTG+AGG + chr7_1:17475472-17475491 Msa1012430:intron 45.0%
TCCTAGCCAACTCCTTATCT+GGG - chr7_1:17476010-17476029 None:intergenic 45.0%
ATCCTAGCCAACTCCTTATC+TGG - chr7_1:17476011-17476030 None:intergenic 45.0%
!! TTCTCTCTGGTTGAGTTGAG+AGG + chr7_1:17476577-17476596 Msa1012430:intron 45.0%
GACATCCGTTGTTACTCTCT+CGG + chr7_1:17476846-17476865 Msa1012430:intron 45.0%
AGGAACCGAGAGAGTAACAA+CGG - chr7_1:17476854-17476873 None:intergenic 45.0%
TTATGGCAGAGAGAGATACG+CGG - chr7_1:17476994-17477013 None:intergenic 45.0%
TTGCATTTGCAGCACCAACT+AGG - chr7_1:17477587-17477606 None:intergenic 45.0%
!! TGGTGCTGCAAATGCAAATC+TGG + chr7_1:17477590-17477609 Msa1012430:CDS 45.0%
!! ACGTGGTCTTAAGCCTTGTT+TGG + chr7_1:17477861-17477880 Msa1012430:intron 45.0%
!! GAGCACTTGTGAGAGTGTTT+AGG - chr7_1:17478038-17478057 None:intergenic 45.0%
! GGTGAGGCATTTGACAGAAA+AGG + chr7_1:17478230-17478249 Msa1012430:intron 45.0%
GCAATCACACCAATATCGGA+TGG - chr7_1:17478288-17478307 None:intergenic 45.0%
CACCAGGATTGAGTTTCACA+TGG - chr7_1:17478326-17478345 None:intergenic 45.0%
ACCGCATGCTTATTTATCCG+GGG + chr7_1:17478371-17478390 Msa1012430:CDS 45.0%
TCCCCGGATAAATAAGCATG+CGG - chr7_1:17478375-17478394 None:intergenic 45.0%
CATGCATTCAATACACTCCC+CGG - chr7_1:17478391-17478410 None:intergenic 45.0%
GTGAGCATGGAACAAAGAGT+CGG - chr7_1:17478468-17478487 None:intergenic 45.0%
TTCCATGCTCACATACAAGC+AGG + chr7_1:17478476-17478495 Msa1012430:CDS 45.0%
TACCTGCTTGTATGTGAGCA+TGG - chr7_1:17478481-17478500 None:intergenic 45.0%
CTCATGCCACATAGATTGCT+TGG + chr7_1:17478919-17478938 Msa1012430:intron 45.0%
TGCCACATAGATTGCTTGGT+TGG + chr7_1:17478923-17478942 Msa1012430:intron 45.0%
TCTCGAATTCCTCAAATGGC+GGG - chr7_1:17479205-17479224 None:intergenic 45.0%
! ACACCACTGTTTCCCCTTTT+GGG - chr7_1:17479244-17479263 None:intergenic 45.0%
! AACACCACTGTTTCCCCTTT+TGG - chr7_1:17479245-17479264 None:intergenic 45.0%
!! CCATCTTTTTGGTCACATCC+GGG + chr7_1:17479285-17479304 Msa1012430:CDS 45.0%
!! CATCTTTTTGGTCACATCCG+GGG + chr7_1:17479286-17479305 Msa1012430:CDS 45.0%
!! AGCGAAAAGAGCATCACCTT+CGG - chr7_1:17479354-17479373 None:intergenic 45.0%
ACGCTAATCTCTGTGTAAGC+AGG - chr7_1:17479377-17479396 None:intergenic 45.0%
GAGTTGCATCTGTACAGAAC+AGG + chr7_1:17479410-17479429 Msa1012430:CDS 45.0%
TTCAAAGGTGGAAGAGCTTG+TGG + chr7_1:17479467-17479486 Msa1012430:three_prime_UTR 45.0%
! TGGTACTGAACCCACTAATC+GGG - chr7_1:17479601-17479620 None:intergenic 45.0%
!! TTAAACAAAAAATAAATAAA+GGG - chr7_1:17475406-17475425 None:intergenic 5.0%
!! TTTAAACAAAAAATAAATAA+AGG - chr7_1:17475407-17475426 None:intergenic 5.0%
!!! TTATTTATTTTTTGTTTAAA+TGG + chr7_1:17475407-17475426 Msa1012430:intron 5.0%
!! AAACAAAATAAAAATAAAAA+GGG - chr7_1:17475890-17475909 None:intergenic 5.0%
!! TAAACAAAATAAAAATAAAA+AGG - chr7_1:17475891-17475910 None:intergenic 5.0%
!!! TTATTTTTATTTTGTTTAAA+AGG + chr7_1:17475893-17475912 Msa1012430:intron 5.0%
GCAACCTGTGACAATTGACC+AGG - chr7_1:17475016-17475035 None:intergenic 50.0%
! GCACCGACATTTGAGGTTGA+AGG + chr7_1:17475479-17475498 Msa1012430:intron 50.0%
GCACCCCATCATAAGAAGCA+CGG - chr7_1:17475639-17475658 None:intergenic 50.0%
! TTAGGTGCTATCTGTGGGGA+AGG + chr7_1:17475965-17475984 Msa1012430:intron 50.0%
AGCTCACCCAGATAAGGAGT+TGG + chr7_1:17476001-17476020 Msa1012430:CDS 50.0%
ACCCAGATAAGGAGTTGGCT+AGG + chr7_1:17476006-17476025 Msa1012430:CDS 50.0%
GTCATTGCAAGAGCCATCTC+AGG - chr7_1:17476080-17476099 None:intergenic 50.0%
! TCGGATTTCGGTCTTGTCCA+TGG + chr7_1:17477236-17477255 Msa1012430:intron 50.0%
CCAACTAGGTCGACAACTTC+CGG - chr7_1:17477573-17477592 None:intergenic 50.0%
GTGAACACAGCCTGTAGAAC+AGG - chr7_1:17477657-17477676 None:intergenic 50.0%
TCGACTGCATGAGGAAAGTG+AGG + chr7_1:17477734-17477753 Msa1012430:CDS 50.0%
!! CCTGGTGAAGCATTGTTCCT+CGG + chr7_1:17478339-17478358 Msa1012430:CDS 50.0%
!! CTGGTGAAGCATTGTTCCTC+GGG + chr7_1:17478340-17478359 Msa1012430:CDS 50.0%
!! TGGTGAAGCATTGTTCCTCG+GGG + chr7_1:17478341-17478360 Msa1012430:CDS 50.0%
! CGGGGAGTGTATTGAATGCA+TGG + chr7_1:17478389-17478408 Msa1012430:CDS 50.0%
TCTGACAATGTTGTGCGAGC+CGG + chr7_1:17478417-17478436 Msa1012430:CDS 50.0%
GAGACTGACATGTCCATACG+TGG - chr7_1:17478640-17478659 None:intergenic 50.0%
! GGTTTTCCAGAGATTCTGCG+AGG + chr7_1:17479146-17479165 Msa1012430:CDS 50.0%
TCTCCCAAAAGGGGAAACAG+TGG + chr7_1:17479238-17479257 Msa1012430:CDS 50.0%
! TCCAGGTCCGTCCATCTTTT+TGG + chr7_1:17479274-17479293 Msa1012430:CDS 50.0%
ACCAAAAAGATGGACGGACC+TGG - chr7_1:17479278-17479297 None:intergenic 50.0%
CCCGGATGTGACCAAAAAGA+TGG - chr7_1:17479288-17479307 None:intergenic 50.0%
!! TTTTTGGTCACATCCGGGGA+AGG + chr7_1:17479290-17479309 Msa1012430:CDS 50.0%
TGTGTTCATCGATCCTTCCC+CGG - chr7_1:17479306-17479325 None:intergenic 50.0%
AAAGGTGGAAGAGCTTGTGG+AGG + chr7_1:17479470-17479489 Msa1012430:three_prime_UTR 50.0%
! CTTATGATGGGGTGCTCCCT+TGG + chr7_1:17475644-17475663 Msa1012430:intron 55.0%
ACACGTCATGTAGAGAGGCG+TGG - chr7_1:17477143-17477162 None:intergenic 55.0%
CCGGAAGTTGTCGACCTAGT+TGG + chr7_1:17477570-17477589 Msa1012430:CDS 55.0%
CCGAGGAACAATGCTTCACC+AGG - chr7_1:17478342-17478361 None:intergenic 55.0%
GACACTCCTCGCAGAATCTC+TGG - chr7_1:17479155-17479174 None:intergenic 55.0%
AGGGGAAACAGTGGTGTTCC+CGG + chr7_1:17479247-17479266 Msa1012430:CDS 55.0%
GGGGAAGGATCGATGAACAC+AGG + chr7_1:17479305-17479324 Msa1012430:CDS 55.0%
!! GGAGCTGTTGGTGCTGCGAT+TGG + chr7_1:17478251-17478270 Msa1012430:CDS 60.0%
ATGGACGGACCTGGAACAGC+CGG - chr7_1:17479269-17479288 None:intergenic 60.0%
CATGCGGTTCATTCGCCCCG+AGG - chr7_1:17478359-17478378 None:intergenic 65.0%
GTGGTGTTCCCGGCTGTTCC+AGG + chr7_1:17479257-17479276 Msa1012430:CDS 65.0%
TGGACGGACCTGGAACAGCC+GGG - chr7_1:17479268-17479287 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 17474636 17479813 17474636 ID=Msa1012430;Name=Msa1012430
chr7_1 mRNA 17474636 17479813 17474636 ID=Msa1012430-mRNA-1;Parent=Msa1012430;Name=Msa1012430-mRNA-1;_AED=0.02;_eAED=0.02;_QI=305|1|1|1|1|1|5|350|425
chr7_1 exon 17474636 17475252 17474636 ID=Msa1012430-mRNA-1:exon:4372;Parent=Msa1012430-mRNA-1
chr7_1 exon 17475969 17476136 17475969 ID=Msa1012430-mRNA-1:exon:4373;Parent=Msa1012430-mRNA-1
chr7_1 exon 17477543 17477755 17477543 ID=Msa1012430-mRNA-1:exon:4374;Parent=Msa1012430-mRNA-1
chr7_1 exon 17478231 17478497 17478231 ID=Msa1012430-mRNA-1:exon:4375;Parent=Msa1012430-mRNA-1
chr7_1 exon 17479146 17479813 17479146 ID=Msa1012430-mRNA-1:exon:4376;Parent=Msa1012430-mRNA-1
chr7_1 five_prime_UTR 17474636 17474940 17474636 ID=Msa1012430-mRNA-1:five_prime_utr;Parent=Msa1012430-mRNA-1
chr7_1 CDS 17474941 17475252 17474941 ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1
chr7_1 CDS 17475969 17476136 17475969 ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1
chr7_1 CDS 17477543 17477755 17477543 ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1
chr7_1 CDS 17478231 17478497 17478231 ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1
chr7_1 CDS 17479146 17479463 17479146 ID=Msa1012430-mRNA-1:cds;Parent=Msa1012430-mRNA-1
chr7_1 three_prime_UTR 17479464 17479813 17479464 ID=Msa1012430-mRNA-1:three_prime_utr;Parent=Msa1012430-mRNA-1
Gene Sequence

>Msa1012430

ATGGAAGATTCAAATCCCCACAATTCACTTCAGAAACTTCATTGTTCTGTTAAGAATTACGATTGGGGTTTACCTGGTCAATTGTCACAGGTTGCTAAGCTTTCTGAGCTTAATTCTGGGTTTCAATTTGATCCAATGAAGCCTTATGCTGAACTTTGGATTGGTACCCATGATTCTGGTCCTTCTTTTCTTGTTTCTGATGATGATGGACAAAGGGTTAGTCTTAAAGATTGGATTTTTGATAACCCTGATTTGTTGCTTGGTCATAAAGTTGTTAACAAATGGGGTTCTGATCTACCTTTCTTGTTTAAGGTGCTATCTGTGGGGAAGGCTTTGTCTATACAAGCTCACCCAGATAAGGAGTTGGCTAGGATGCTGCATAAATTGCATCCTGATGTGTATAAAGATGGGAATCATAAACCTGAGATGGCTCTTGCAATGACAGATTTTGAGGCTCTTTGTGGATTTATCACTCTTAAGGAGCTTAAAGCTGTGATTCATACTGTTCCGGAAGTTGTCGACCTAGTTGGTGCTGCAAATGCAAATCTGGTGTTAGAAACTAGTGATCAGAATGGTGAAGAGAAGGTTAAACCTGTTCTACAGGCTGTGTTCACTCATCTTATGTCAGCTAGTAAAGAGATAGTCACCTATGCTGTGAACAGATTGATAAATCGACTGCATGAGGAAAGTGAGGTGAGGCATTTGACAGAAAAGGAGCTGTTGGTGCTGCGATTGGAAAATCAATACCCATCCGATATTGGTGTGATTGCAGCTTTCTTTCTGAACCATGTGAAACTCAATCCTGGTGAAGCATTGTTCCTCGGGGCGAATGAACCGCATGCTTATTTATCCGGGGAGTGTATTGAATGCATGGCAACTTCTGACAATGTTGTGCGAGCCGGCCTAACTCCCAAATTCATAGATGTGCCGACTCTTTGTTCCATGCTCACATACAAGCAGGGTTTTCCAGAGATTCTGCGAGGAGTGTCTATGAATCCATATGTAAATAAATATATCCCGCCATTTGAGGAATTCGAGATCGATCGTTGTATTCTCCCAAAAGGGGAAACAGTGGTGTTCCCGGCTGTTCCAGGTCCGTCCATCTTTTTGGTCACATCCGGGGAAGGATCGATGAACACAGGATCACCCAAAGTTTATGAAATCACCGAAGGTGATGCTCTTTTCGCTCCTGCTTACACAGAGATTAGCGTCGCGAGTGAATCCGAGTTGCATCTGTACAGAACAGGGATTAATAGCAAGTTTTTTCAAGACTCTTAA

Protein sequence

>Msa1012430

MEDSNPHNSLQKLHCSVKNYDWGLPGQLSQVAKLSELNSGFQFDPMKPYAELWIGTHDSGPSFLVSDDDGQRVSLKDWIFDNPDLLLGHKVVNKWGSDLPFLFKVLSVGKALSIQAHPDKELARMLHKLHPDVYKDGNHKPEMALAMTDFEALCGFITLKELKAVIHTVPEVVDLVGAANANLVLETSDQNGEEKVKPVLQAVFTHLMSASKEIVTYAVNRLINRLHEESEVRHLTEKELLVLRLENQYPSDIGVIAAFFLNHVKLNPGEALFLGANEPHAYLSGECIECMATSDNVVRAGLTPKFIDVPTLCSMLTYKQGFPEILRGVSMNPYVNKYIPPFEEFEIDRCILPKGETVVFPAVPGPSIFLVTSGEGSMNTGSPKVYEITEGDALFAPAYTEISVASESELHLYRTGINSKFFQDS*