AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1111920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111920 MtrunA17_Chr7g0245291 95.322 342 11 2 4 341 5 345 0.0 646
Msa1111920 MtrunA17_Chr7g0245261 77.108 332 65 4 14 335 1 331 1.08e-160 453
Msa1111920 MtrunA17_Chr7g0240091 34.483 232 126 8 110 321 223 448 2.30e-29 117
Msa1111920 MtrunA17_Chr4g0020011 32.328 232 136 6 108 322 151 378 4.10e-28 112
Msa1111920 MtrunA17_Chr2g0320711 33.190 232 129 8 110 321 210 435 8.99e-25 103
Msa1111920 MtrunA17_Chr3g0090071 30.435 230 141 7 108 322 163 388 1.73e-23 100
Msa1111920 MtrunA17_Chr4g0039291 30.131 229 143 4 108 321 162 388 5.37e-23 98.6
Msa1111920 MtrunA17_Chr3g0114241 27.755 245 152 7 107 329 483 724 6.45e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111920 AT3G08640.1 68.924 251 70 3 91 338 90 335 9.20e-123 357
Msa1111920 AT3G08630.1 70.902 244 66 3 99 338 95 337 3.15e-119 348
Msa1111920 AT2G37860.3 32.258 248 141 8 96 321 190 432 8.72e-28 112
Msa1111920 AT2G37860.4 32.258 248 141 8 96 321 190 432 8.72e-28 112
Msa1111920 AT5G22790.1 34.061 229 132 7 110 321 207 433 8.92e-27 110
Msa1111920 AT5G12470.1 31.304 230 143 5 108 323 157 385 5.82e-24 101
Msa1111920 AT3G56140.2 26.809 235 153 5 107 322 256 490 1.20e-17 84.3
Msa1111920 AT2G40400.2 27.917 240 152 7 102 321 461 699 1.71e-17 84.0
Msa1111920 AT2G40400.1 27.917 240 152 7 102 321 461 699 1.71e-17 84.0
Msa1111920 AT3G56140.1 26.923 234 152 5 107 321 475 708 2.06e-17 84.0
Msa1111920 AT3G56140.3 26.923 234 152 5 107 321 475 708 2.06e-17 84.0
Msa1111920 AT2G37860.2 28.302 159 96 4 97 239 191 347 5.36e-12 66.6
Msa1111920 AT2G37860.1 28.302 159 96 4 97 239 191 347 5.36e-12 66.6
Msa1111920 AT2G40400.3 25.131 191 125 4 102 275 461 650 1.26e-11 66.2
Msa1111920 AT5G24690.1 29.508 183 102 5 112 280 240 409 1.30e-11 65.9

Find 131 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCCAAATGAAAACATTT+TGG 0.167163 7_3:-57676454 Msa1111920:three_prime_UTR
GGGGATTTGGAATAAGTTTC+TGG 0.173819 7_3:-57676570 Msa1111920:three_prime_UTR
AATACATGGTTATACTAATT+TGG 0.177826 7_3:+57676497 None:intergenic
TATAACCATGTATTGGATTT+TGG 0.192405 7_3:-57676488 Msa1111920:three_prime_UTR
ATTTGGCACGTTAATGTTTC+AGG 0.197131 7_3:+57676514 None:intergenic
ACCTGGTGCCTATAGTTTAT+TGG 0.200815 7_3:-57677200 Msa1111920:CDS
TGTTGGAGGGGATGGTGGTG+GGG 0.239897 7_3:-57677593 Msa1111920:CDS
TCTCACTTGGGCTGCTCATA+TGG 0.247103 7_3:-57677014 Msa1111920:CDS
ATGGCTACTAGGCCTAATTT+TGG 0.248476 7_3:-57677373 Msa1111920:CDS
CGATCCACAGTTTCCTTTCA+AGG 0.273759 7_3:-57677443 Msa1111920:CDS
TTTGTTGGAGGGGATGGTGG+TGG 0.275850 7_3:-57677595 Msa1111920:CDS
AATGTAGGTGGAGGCTTGTT+TGG 0.286617 7_3:+57677046 None:intergenic
AAGTCAGGTGATTCATCTTT+TGG 0.290733 7_3:-57677511 Msa1111920:CDS
AGTTCATTCAACCCAAAATT+AGG 0.294007 7_3:+57677361 None:intergenic
ATCGCTTTGTTGGTGTTGTT+TGG 0.298708 7_3:+57676739 None:intergenic
TACCTTGCTGTTCTAGAATC+AGG 0.298976 7_3:-57677968 Msa1111920:intron
GTTGGAGGGGATGGTGGTGG+GGG 0.308403 7_3:-57677592 Msa1111920:CDS
TTTGGAACTTTGGTGTATAA+AGG 0.311619 7_3:-57677172 Msa1111920:CDS
GTTTCAACCTTTGAGGCAAA+TGG 0.317585 7_3:+57677623 None:intergenic
ATGTAGGTGGAGGCTTGTTT+GGG 0.323476 7_3:+57677047 None:intergenic
TGGTGGTGGAGATGGAAATT+CGG 0.330418 7_3:-57677548 Msa1111920:CDS
GTTGGTCGTGGTGGTGGTGG+TGG 0.332421 7_3:-57677568 Msa1111920:CDS
TTGTTGGAGGGGATGGTGGT+GGG 0.333341 7_3:-57677594 Msa1111920:CDS
GGTTCAAACATGTGACTCTT+AGG 0.337899 7_3:+57677220 None:intergenic
TCACAATTGGAGGTTGGATT+AGG 0.342575 7_3:-57676803 Msa1111920:CDS
GGGCTAGGTGCTGGTCTTGT+TGG 0.343612 7_3:-57677130 Msa1111920:CDS
GGAGTTGGTCGTGGTGGTGG+TGG 0.354212 7_3:-57677571 Msa1111920:CDS
ACTCAACCCCATTGAGAGTT+TGG 0.360058 7_3:+57676969 None:intergenic
ATTGGATAGGTTTGGAACTT+TGG 0.360848 7_3:-57677182 Msa1111920:CDS
TTCTGAATGGTTGGAGATCA+AGG 0.362688 7_3:-57677474 Msa1111920:CDS
GGAGAAAGTGCTTAATCCTT+TGG 0.363328 7_3:-57676939 Msa1111920:CDS
AACTGAGGTTGCGGAAATAA+TGG 0.363963 7_3:+57677679 None:intergenic
TACAGATCAAATGGAAACTA+TGG 0.365842 7_3:-57677758 Msa1111920:intron
TATAGTTTATTGGATAGGTT+TGG 0.365890 7_3:-57677190 Msa1111920:CDS
CTCACTTGGGCTGCTCATAT+GGG 0.366434 7_3:-57677013 Msa1111920:CDS
GGTGGTGGAGATGGAAATTC+GGG 0.372633 7_3:-57677547 Msa1111920:CDS
CTTGTTTGGGGACTCAAAGC+TGG 0.378323 7_3:+57677060 None:intergenic
AAGCTAAGTTTCAACCTTTG+AGG 0.381239 7_3:+57677616 None:intergenic
ACGTTAATGTTTCAGGTTGT+AGG 0.381616 7_3:+57676521 None:intergenic
TCGCTTTGTTGGTGTTGTTT+GGG 0.384484 7_3:+57676740 None:intergenic
GCCATTGTTGGGCTAGGTGC+TGG 0.386014 7_3:-57677139 Msa1111920:CDS
TTGAGGCAAATGGGTTGGTT+TGG 0.392267 7_3:+57677633 None:intergenic
AGGTTGAAACTTAGCTTTGT+TGG 0.393032 7_3:-57677610 Msa1111920:CDS
GATTGAAGCTATCGCTTTGT+TGG 0.393856 7_3:+57676729 None:intergenic
AGGTGTGCGAACAATGTTCT+TGG 0.403297 7_3:-57676890 Msa1111920:CDS
CATTGCTGAATGGTCTCACT+TGG 0.404560 7_3:-57677027 Msa1111920:CDS
TTGCTTTGTTACAGATCAAA+TGG 0.408267 7_3:-57677767 Msa1111920:intron
AAATTAGTATAACCATGTAT+TGG 0.409196 7_3:-57676495 Msa1111920:three_prime_UTR
CTTAGCTTTGTTGGAGGGGA+TGG 0.412949 7_3:-57677601 Msa1111920:CDS
GTTGGAACAGCACTTTCAAA+TGG 0.416673 7_3:-57677112 Msa1111920:CDS
GGTGTGCGAACAATGTTCTT+GGG 0.418885 7_3:-57676889 Msa1111920:CDS
AAACCTATCCAATAAACTAT+AGG 0.423191 7_3:+57677192 None:intergenic
GGAAATTCGGGAGGTGATGA+TGG 0.424238 7_3:-57677535 Msa1111920:CDS
GTGCCTATAGTTTATTGGAT+AGG 0.425685 7_3:-57677195 Msa1111920:CDS
GTGATGTTGGCAAGGTTGAC+AGG 0.427456 7_3:-57676854 Msa1111920:CDS
CTCAGGTACCAAACTCTCAA+TGG 0.432392 7_3:-57676977 Msa1111920:CDS
TTGAAAGGTAAAAGAGGCTT+TGG 0.435948 7_3:-57676772 Msa1111920:exon
AGACCGCAGTTGTGGTTCTC+AGG 0.439883 7_3:-57676910 Msa1111920:CDS
TCAGGTACCAAACTCTCAAT+GGG 0.440391 7_3:-57676976 Msa1111920:CDS
TTCGTTTCTGCTTTATTGGT+AGG 0.445097 7_3:-57676414 Msa1111920:three_prime_UTR
TGAGAAGAAGCCATCACAAT+TGG 0.446713 7_3:-57676816 Msa1111920:CDS
TATGTAGCGTAGATTGAGAT+GGG 0.448626 7_3:-57676591 Msa1111920:three_prime_UTR
CAAGGTTCTGAGCGAGGAGT+TGG 0.461312 7_3:-57677425 Msa1111920:CDS
TATCTGTTGGCACCAACATT+GGG 0.462339 7_3:-57677283 Msa1111920:CDS
TTTCAACCTTTGAGGCAAAT+GGG 0.463281 7_3:+57677624 None:intergenic
AACCAACCCATTTGCCTCAA+AGG 0.474724 7_3:-57677630 Msa1111920:CDS
ATTTGGAATAAGTTTCTGGC+TGG 0.476114 7_3:-57676566 Msa1111920:three_prime_UTR
TGGGTACGTTTCTGAATGGT+TGG 0.486586 7_3:-57677483 Msa1111920:CDS
AGCTTTGTTGGAGGGGATGG+TGG 0.486688 7_3:-57677598 Msa1111920:CDS
TTGGAACAGCACTTTCAAAT+GGG 0.488566 7_3:-57677111 Msa1111920:CDS
GGAGGTGATGATGGAAAGTC+AGG 0.497516 7_3:-57677526 Msa1111920:CDS
AGTGCATGACTCTGACCAAA+TGG 0.499488 7_3:+57677715 None:intergenic
AACAGCACTTTCAAATGGGT+TGG 0.504935 7_3:-57677107 Msa1111920:CDS
AACCTTTGAGGCAAATGGGT+TGG 0.505493 7_3:+57677628 None:intergenic
GTGAGACCATTCAGCAATGT+AGG 0.514573 7_3:+57677031 None:intergenic
GAAACTTAGCTTTGTTGGAG+GGG 0.522668 7_3:-57677605 Msa1111920:CDS
TTGAAACTTAGCTTTGTTGG+AGG 0.527400 7_3:-57677607 Msa1111920:CDS
GTATCTGTTGGCACCAACAT+TGG 0.527660 7_3:-57677284 Msa1111920:CDS
CAATTATGAAACTGAGGTTG+CGG 0.533344 7_3:+57677670 None:intergenic
TGGGTTTCAGCAGCAACCTC+AGG 0.535353 7_3:-57676994 Msa1111920:CDS
GTATGTAGCGTAGATTGAGA+TGG 0.535679 7_3:-57676592 Msa1111920:three_prime_UTR
CCTCCACCTACATTGCTGAA+TGG 0.535956 7_3:-57677037 Msa1111920:CDS
TGAAACTTAGCTTTGTTGGA+GGG 0.537812 7_3:-57677606 Msa1111920:CDS
GGAGGTTGGATTAGGTGAGA+AGG 0.538906 7_3:-57676795 Msa1111920:CDS
GAAGAAGCCATCACAATTGG+AGG 0.539032 7_3:-57676813 Msa1111920:CDS
TTGTTTGGGGACTCAAAGCT+GGG 0.541835 7_3:+57677061 None:intergenic
TCCTTTCAAGGTTCTGAGCG+AGG 0.543017 7_3:-57677431 Msa1111920:CDS
TCCTCGCTCAGAACCTTGAA+AGG 0.543217 7_3:+57677430 None:intergenic
GGTCAGTACGAGGAAGAAGA+TGG 0.546188 7_3:-57677086 Msa1111920:CDS
AAGCCATCACAATTGGAGGT+TGG 0.549494 7_3:-57676809 Msa1111920:CDS
CGCGAGCTCTACAACAACCT+TGG 0.552559 7_3:+57676681 None:intergenic
AGAAGGTTGAAAGGTAAAAG+AGG 0.556993 7_3:-57676778 Msa1111920:exon
GTGTGCGAACAATGTTCTTG+GGG 0.557898 7_3:-57676888 Msa1111920:CDS
TCTGAATGGTTGGAGATCAA+GGG 0.560720 7_3:-57677473 Msa1111920:CDS
GGTATTCAAGACCGCAGTTG+TGG 0.561645 7_3:-57676918 Msa1111920:CDS
CTGAAAGAGTTTGTCAGAGT+AGG 0.565170 7_3:+57676625 None:intergenic
CAATGGGGTTGAGTTCATGT+TGG 0.565831 7_3:-57676960 Msa1111920:CDS
TGGAGGATTAAAACGCAGAA+GGG 0.566901 7_3:+57677735 None:intergenic
CATTGAGAGTTTGGTACCTG+AGG 0.567191 7_3:+57676978 None:intergenic
GATTAGGTGAGAAGGTTGAA+AGG 0.569180 7_3:-57676787 Msa1111920:CDS
CCATTCAGCAATGTAGGTGG+AGG 0.577563 7_3:+57677037 None:intergenic
ATGGAGGATTAAAACGCAGA+AGG 0.579827 7_3:+57677734 None:intergenic
GGACAAGATGCAAAGATAGC+CGG 0.583704 7_3:+57677241 None:intergenic
TTGACAGGGTCACAAAATGC+TGG 0.588376 7_3:-57676839 Msa1111920:CDS
TGTAGGTGGAGGCTTGTTTG+GGG 0.588831 7_3:+57677048 None:intergenic
TCCAATAAACTATAGGCACC+AGG 0.590594 7_3:+57677199 None:intergenic
CAAGGTTGTTGTAGAGCTCG+CGG 0.595690 7_3:-57676680 Msa1111920:three_prime_UTR
ACTGTAGCAGATCCCAATGT+TGG 0.599025 7_3:+57677271 None:intergenic
ATCTGCTACAGTCAAAGTGC+CGG 0.599258 7_3:-57677260 Msa1111920:CDS
AAGAGTCACATGTTTGAACC+TGG 0.604135 7_3:-57677217 Msa1111920:CDS
GGAGACCAAAATCCAATACA+TGG 0.605524 7_3:+57676483 None:intergenic
AATCCAACCTCCAATTGTGA+TGG 0.614141 7_3:+57676806 None:intergenic
TGATGTTGGCAAGGTTGACA+GGG 0.615810 7_3:-57676853 Msa1111920:CDS
GTTCTGAGCGAGGAGTTGGT+TGG 0.616099 7_3:-57677421 Msa1111920:CDS
TGTAGCGTAGATTGAGATGG+GGG 0.617513 7_3:-57676589 Msa1111920:three_prime_UTR
ACCAGCACCTAGCCCAACAA+TGG 0.619549 7_3:+57677138 None:intergenic
ATTGCTGAATGGTCTCACTT+GGG 0.621562 7_3:-57677026 Msa1111920:CDS
CAAATGGGTTGGTCAGTACG+AGG 0.622120 7_3:-57677096 Msa1111920:CDS
AGACCATTCAGCAATGTAGG+TGG 0.628094 7_3:+57677034 None:intergenic
CTTGAAAGGAAACTGTGGAT+CGG 0.632655 7_3:+57677444 None:intergenic
AGAACCTTGAAAGGAAACTG+TGG 0.643443 7_3:+57677439 None:intergenic
ATAGAACAATTATGAAACTG+AGG 0.657815 7_3:+57677664 None:intergenic
ACTGCGGTCTTGAATACCAA+AGG 0.660663 7_3:+57676923 None:intergenic
GCATGACTCTGACCAAATGG+AGG 0.663317 7_3:+57677718 None:intergenic
ATGTAGCGTAGATTGAGATG+GGG 0.668752 7_3:-57676590 Msa1111920:three_prime_UTR
TTTGACTATTGCATTGACCA+AGG 0.674682 7_3:-57676698 Msa1111920:three_prime_UTR
TGTGCGAACAATGTTCTTGG+GGG 0.675514 7_3:-57676887 Msa1111920:CDS
GGTGGAGATGGAAATTCGGG+AGG 0.679926 7_3:-57677544 Msa1111920:CDS
ACACCTGAGAACCACAACTG+CGG 0.712345 7_3:+57676907 None:intergenic
TACCTGATTCTAGAACAGCA+AGG 0.723306 7_3:+57677966 None:intergenic
CAGGTACCAAACTCTCAATG+GGG 0.736143 7_3:-57676975 Msa1111920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTCATAAATTTTATTTTT+GGG - chr7_3:57676569-57676588 Msa1111920:three_prime_UTR 15.0%
!!! AAATATCAAATTTTTGAAAC+AGG + chr7_3:57676673-57676692 None:intergenic 15.0%
!!! TCCTCATAAATTTTATTTTT+GGG - chr7_3:57676569-57676588 Msa1111920:three_prime_UTR 15.0%
!!! AAATATCAAATTTTTGAAAC+AGG + chr7_3:57676673-57676692 None:intergenic 15.0%
!!! TAACACACATTCAATTTTTT+AGG - chr7_3:57676532-57676551 Msa1111920:three_prime_UTR 20.0%
!!! AACACACATTCAATTTTTTA+GGG - chr7_3:57676533-57676552 Msa1111920:three_prime_UTR 20.0%
!!! CTCCTCATAAATTTTATTTT+TGG - chr7_3:57676568-57676587 Msa1111920:three_prime_UTR 20.0%
!! ACCCAAAAATAAAATTTATG+AGG + chr7_3:57676573-57676592 None:intergenic 20.0%
!!! TTTCTTTTACTTTCATTTTC+AGG - chr7_3:57676596-57676615 Msa1111920:three_prime_UTR 20.0%
!!! AGTTATGCTTTATTTATGAA+TGG - chr7_3:57676751-57676770 Msa1111920:three_prime_UTR 20.0%
!!! GTTATGCTTTATTTATGAAT+GGG - chr7_3:57676752-57676771 Msa1111920:three_prime_UTR 20.0%
!! AATACATGGTTATACTAATT+TGG + chr7_3:57678096-57678115 None:intergenic 20.0%
!! AAATTAGTATAACCATGTAT+TGG - chr7_3:57678095-57678114 Msa1111920:intron 20.0%
!!! AGTTTTGGTTATATAAAATG+AGG - chr7_3:57678259-57678278 Msa1111920:intron 20.0%
!!! TAACACACATTCAATTTTTT+AGG - chr7_3:57676532-57676551 Msa1111920:three_prime_UTR 20.0%
!!! AACACACATTCAATTTTTTA+GGG - chr7_3:57676533-57676552 Msa1111920:three_prime_UTR 20.0%
!!! CTCCTCATAAATTTTATTTT+TGG - chr7_3:57676568-57676587 Msa1111920:three_prime_UTR 20.0%
!! ACCCAAAAATAAAATTTATG+AGG + chr7_3:57676573-57676592 None:intergenic 20.0%
!!! TTTCTTTTACTTTCATTTTC+AGG - chr7_3:57676596-57676615 Msa1111920:three_prime_UTR 20.0%
!!! AGTTATGCTTTATTTATGAA+TGG - chr7_3:57676751-57676770 Msa1111920:three_prime_UTR 20.0%
!!! GTTATGCTTTATTTATGAAT+GGG - chr7_3:57676752-57676771 Msa1111920:three_prime_UTR 20.0%
!! AATACATGGTTATACTAATT+TGG + chr7_3:57678096-57678115 None:intergenic 20.0%
!! AAATTAGTATAACCATGTAT+TGG - chr7_3:57678095-57678114 Msa1111920:intron 20.0%
!!! TGAATAATGATTTGTTGCTA+TGG - chr7_3:57676726-57676745 Msa1111920:three_prime_UTR 25.0%
! ATAGAACAATTATGAAACTG+AGG + chr7_3:57676929-57676948 None:intergenic 25.0%
!!! TGATTCATCTTTTGGAATTT+TGG - chr7_3:57677087-57677106 Msa1111920:CDS 25.0%
!!! GATTCATCTTTTGGAATTTT+GGG - chr7_3:57677088-57677107 Msa1111920:CDS 25.0%
! AAACCTATCCAATAAACTAT+AGG + chr7_3:57677401-57677420 None:intergenic 25.0%
! TATAGTTTATTGGATAGGTT+TGG - chr7_3:57677400-57677419 Msa1111920:CDS 25.0%
!! TATAACCATGTATTGGATTT+TGG - chr7_3:57678102-57678121 Msa1111920:intron 25.0%
!! TAGCCAAAATGTTTTCATTT+GGG + chr7_3:57678142-57678161 None:intergenic 25.0%
!! ATAGCCAAAATGTTTTCATT+TGG + chr7_3:57678143-57678162 None:intergenic 25.0%
!! GACACTTTTACAATGATAAT+TGG + chr7_3:57678223-57678242 None:intergenic 25.0%
!!! TGAATAATGATTTGTTGCTA+TGG - chr7_3:57676726-57676745 Msa1111920:three_prime_UTR 25.0%
! ATAGAACAATTATGAAACTG+AGG + chr7_3:57676929-57676948 None:intergenic 25.0%
!!! TGATTCATCTTTTGGAATTT+TGG - chr7_3:57677087-57677106 Msa1111920:CDS 25.0%
!!! GATTCATCTTTTGGAATTTT+GGG - chr7_3:57677088-57677107 Msa1111920:CDS 25.0%
! AAACCTATCCAATAAACTAT+AGG + chr7_3:57677401-57677420 None:intergenic 25.0%
! TATAGTTTATTGGATAGGTT+TGG - chr7_3:57677400-57677419 Msa1111920:CDS 25.0%
!! TATAACCATGTATTGGATTT+TGG - chr7_3:57678102-57678121 Msa1111920:intron 25.0%
!! TAGCCAAAATGTTTTCATTT+GGG + chr7_3:57678142-57678161 None:intergenic 25.0%
!! ATAGCCAAAATGTTTTCATT+TGG + chr7_3:57678143-57678162 None:intergenic 25.0%
!! GACACTTTTACAATGATAAT+TGG + chr7_3:57678223-57678242 None:intergenic 25.0%
CAGGTGAAACAAAATATCTT+TGG - chr7_3:57676336-57676355 Msa1111920:three_prime_UTR 30.0%
GTGTGTTATATAGTAGTGTA+GGG + chr7_3:57676520-57676539 None:intergenic 30.0%
TGTGTGTTATATAGTAGTGT+AGG + chr7_3:57676521-57676540 None:intergenic 30.0%
TTATTTATGAATGGGTGATG+TGG - chr7_3:57676760-57676779 Msa1111920:three_prime_UTR 30.0%
TATTTATGAATGGGTGATGT+GGG - chr7_3:57676761-57676780 Msa1111920:three_prime_UTR 30.0%
! TTGCTTTGTTACAGATCAAA+TGG - chr7_3:57676823-57676842 Msa1111920:CDS 30.0%
TACAGATCAAATGGAAACTA+TGG - chr7_3:57676832-57676851 Msa1111920:CDS 30.0%
AGTTCATTCAACCCAAAATT+AGG + chr7_3:57677232-57677251 None:intergenic 30.0%
!!! GTTTTTTCAACTCTTGTTGT+TGG - chr7_3:57677259-57677278 Msa1111920:CDS 30.0%
! TTTTACACTCATGTATCTGT+TGG - chr7_3:57677294-57677313 Msa1111920:CDS 30.0%
! TTTGGAACTTTGGTGTATAA+AGG - chr7_3:57677418-57677437 Msa1111920:CDS 30.0%
!!! GAACTATTTTTGCCATTGTT+GGG - chr7_3:57677440-57677459 Msa1111920:CDS 30.0%
! CAAAATGTTTTCATTTGGGA+AGG + chr7_3:57678138-57678157 None:intergenic 30.0%
! CTTCCCAAATGAAAACATTT+TGG - chr7_3:57678136-57678155 Msa1111920:intron 30.0%
! GTTTTTCGTTTCTGCTTTAT+TGG - chr7_3:57678172-57678191 Msa1111920:intron 30.0%
! AAGTGTCACAAATCTTTTTG+CGG - chr7_3:57678236-57678255 Msa1111920:intron 30.0%
CAGGTGAAACAAAATATCTT+TGG - chr7_3:57676336-57676355 Msa1111920:three_prime_UTR 30.0%
GTGTGTTATATAGTAGTGTA+GGG + chr7_3:57676520-57676539 None:intergenic 30.0%
TGTGTGTTATATAGTAGTGT+AGG + chr7_3:57676521-57676540 None:intergenic 30.0%
TTATTTATGAATGGGTGATG+TGG - chr7_3:57676760-57676779 Msa1111920:three_prime_UTR 30.0%
TATTTATGAATGGGTGATGT+GGG - chr7_3:57676761-57676780 Msa1111920:three_prime_UTR 30.0%
! TTGCTTTGTTACAGATCAAA+TGG - chr7_3:57676823-57676842 Msa1111920:CDS 30.0%
TACAGATCAAATGGAAACTA+TGG - chr7_3:57676832-57676851 Msa1111920:CDS 30.0%
AGTTCATTCAACCCAAAATT+AGG + chr7_3:57677232-57677251 None:intergenic 30.0%
!!! GTTTTTTCAACTCTTGTTGT+TGG - chr7_3:57677259-57677278 Msa1111920:CDS 30.0%
! TTTTACACTCATGTATCTGT+TGG - chr7_3:57677294-57677313 Msa1111920:CDS 30.0%
! TTTGGAACTTTGGTGTATAA+AGG - chr7_3:57677418-57677437 Msa1111920:CDS 30.0%
!!! GAACTATTTTTGCCATTGTT+GGG - chr7_3:57677440-57677459 Msa1111920:CDS 30.0%
! CAAAATGTTTTCATTTGGGA+AGG + chr7_3:57678138-57678157 None:intergenic 30.0%
! CTTCCCAAATGAAAACATTT+TGG - chr7_3:57678136-57678155 Msa1111920:intron 30.0%
! GTTTTTCGTTTCTGCTTTAT+TGG - chr7_3:57678172-57678191 Msa1111920:intron 30.0%
! AAGTGTCACAAATCTTTTTG+CGG - chr7_3:57678236-57678255 Msa1111920:intron 30.0%
ATCTGATCCTCACATAACTA+TGG + chr7_3:57676406-57676425 None:intergenic 35.0%
GATGATGAATGTGACAAACA+TGG + chr7_3:57676456-57676475 None:intergenic 35.0%
TCAACATGGTGTTCATCTAT+TGG + chr7_3:57676488-57676507 None:intergenic 35.0%
TAGGGTGTAGAAAATCAACA+TGG + chr7_3:57676502-57676521 None:intergenic 35.0%
CAATTATGAAACTGAGGTTG+CGG + chr7_3:57676923-57676942 None:intergenic 35.0%
!! TTTCAACCTTTGAGGCAAAT+GGG + chr7_3:57676969-57676988 None:intergenic 35.0%
AAGCTAAGTTTCAACCTTTG+AGG + chr7_3:57676977-57676996 None:intergenic 35.0%
!! AGGTTGAAACTTAGCTTTGT+TGG - chr7_3:57676980-57676999 Msa1111920:CDS 35.0%
!! TTGAAACTTAGCTTTGTTGG+AGG - chr7_3:57676983-57677002 Msa1111920:CDS 35.0%
!! TGAAACTTAGCTTTGTTGGA+GGG - chr7_3:57676984-57677003 Msa1111920:CDS 35.0%
! AAGTCAGGTGATTCATCTTT+TGG - chr7_3:57677079-57677098 Msa1111920:CDS 35.0%
!! ATTTTGGGTACGTTTCTGAA+TGG - chr7_3:57677103-57677122 Msa1111920:CDS 35.0%
GTGCCTATAGTTTATTGGAT+AGG - chr7_3:57677395-57677414 Msa1111920:CDS 35.0%
! ATTGGATAGGTTTGGAACTT+TGG - chr7_3:57677408-57677427 Msa1111920:CDS 35.0%
!!! GGAACTATTTTTGCCATTGT+TGG - chr7_3:57677439-57677458 Msa1111920:CDS 35.0%
TTGGAACAGCACTTTCAAAT+GGG - chr7_3:57677479-57677498 Msa1111920:CDS 35.0%
AGAAGGTTGAAAGGTAAAAG+AGG - chr7_3:57677812-57677831 Msa1111920:intron 35.0%
TTGAAAGGTAAAAGAGGCTT+TGG - chr7_3:57677818-57677837 Msa1111920:intron 35.0%
! TTTGACTATTGCATTGACCA+AGG - chr7_3:57677892-57677911 Msa1111920:intron 35.0%
TATGTAGCGTAGATTGAGAT+GGG - chr7_3:57677999-57678018 Msa1111920:intron 35.0%
!! ATTTGGAATAAGTTTCTGGC+TGG - chr7_3:57678024-57678043 Msa1111920:intron 35.0%
!! ACGTTAATGTTTCAGGTTGT+AGG + chr7_3:57678072-57678091 None:intergenic 35.0%
ATTTGGCACGTTAATGTTTC+AGG + chr7_3:57678079-57678098 None:intergenic 35.0%
! TTTTCATTTGGGAAGGTAGT+TGG + chr7_3:57678131-57678150 None:intergenic 35.0%
! TTCGTTTCTGCTTTATTGGT+AGG - chr7_3:57678176-57678195 Msa1111920:intron 35.0%
! CAAATCTTTTTGCGGAGTTT+TGG - chr7_3:57678244-57678263 Msa1111920:intron 35.0%
ATCTGATCCTCACATAACTA+TGG + chr7_3:57676406-57676425 None:intergenic 35.0%
GATGATGAATGTGACAAACA+TGG + chr7_3:57676456-57676475 None:intergenic 35.0%
TCAACATGGTGTTCATCTAT+TGG + chr7_3:57676488-57676507 None:intergenic 35.0%
TAGGGTGTAGAAAATCAACA+TGG + chr7_3:57676502-57676521 None:intergenic 35.0%
CAATTATGAAACTGAGGTTG+CGG + chr7_3:57676923-57676942 None:intergenic 35.0%
!! TTTCAACCTTTGAGGCAAAT+GGG + chr7_3:57676969-57676988 None:intergenic 35.0%
AAGCTAAGTTTCAACCTTTG+AGG + chr7_3:57676977-57676996 None:intergenic 35.0%
!! AGGTTGAAACTTAGCTTTGT+TGG - chr7_3:57676980-57676999 Msa1111920:CDS 35.0%
!! TTGAAACTTAGCTTTGTTGG+AGG - chr7_3:57676983-57677002 Msa1111920:CDS 35.0%
!! TGAAACTTAGCTTTGTTGGA+GGG - chr7_3:57676984-57677003 Msa1111920:CDS 35.0%
! AAGTCAGGTGATTCATCTTT+TGG - chr7_3:57677079-57677098 Msa1111920:CDS 35.0%
!! ATTTTGGGTACGTTTCTGAA+TGG - chr7_3:57677103-57677122 Msa1111920:CDS 35.0%
GTGCCTATAGTTTATTGGAT+AGG - chr7_3:57677395-57677414 Msa1111920:CDS 35.0%
! ATTGGATAGGTTTGGAACTT+TGG - chr7_3:57677408-57677427 Msa1111920:CDS 35.0%
!!! GGAACTATTTTTGCCATTGT+TGG - chr7_3:57677439-57677458 Msa1111920:CDS 35.0%
TTGGAACAGCACTTTCAAAT+GGG - chr7_3:57677479-57677498 Msa1111920:CDS 35.0%
AGAAGGTTGAAAGGTAAAAG+AGG - chr7_3:57677812-57677831 Msa1111920:intron 35.0%
TTGAAAGGTAAAAGAGGCTT+TGG - chr7_3:57677818-57677837 Msa1111920:intron 35.0%
! TTTGACTATTGCATTGACCA+AGG - chr7_3:57677892-57677911 Msa1111920:intron 35.0%
TATGTAGCGTAGATTGAGAT+GGG - chr7_3:57677999-57678018 Msa1111920:intron 35.0%
!! ATTTGGAATAAGTTTCTGGC+TGG - chr7_3:57678024-57678043 Msa1111920:intron 35.0%
!! ACGTTAATGTTTCAGGTTGT+AGG + chr7_3:57678072-57678091 None:intergenic 35.0%
ATTTGGCACGTTAATGTTTC+AGG + chr7_3:57678079-57678098 None:intergenic 35.0%
! TTTTCATTTGGGAAGGTAGT+TGG + chr7_3:57678131-57678150 None:intergenic 35.0%
! TTCGTTTCTGCTTTATTGGT+AGG - chr7_3:57678176-57678195 Msa1111920:intron 35.0%
! CAAATCTTTTTGCGGAGTTT+TGG - chr7_3:57678244-57678263 Msa1111920:intron 35.0%
TATCTTTGGCTGCTACATTG+AGG - chr7_3:57676350-57676369 Msa1111920:three_prime_UTR 40.0%
GGATACACCATAGTTATGTG+AGG - chr7_3:57676396-57676415 Msa1111920:three_prime_UTR 40.0%
GTGAGGATCAGATAATCCAA+AGG - chr7_3:57676413-57676432 Msa1111920:three_prime_UTR 40.0%
CCACAAAAACTTGTAGCCTT+TGG + chr7_3:57676432-57676451 None:intergenic 40.0%
! CCAAAGGCTACAAGTTTTTG+TGG - chr7_3:57676429-57676448 Msa1111920:three_prime_UTR 40.0%
ACATGGTGTTCATCTATTGG+CGG + chr7_3:57676485-57676504 None:intergenic 40.0%
!! TACCTTGCTGTTCTAGAATC+AGG - chr7_3:57676622-57676641 Msa1111920:three_prime_UTR 40.0%
!! TACCTGATTCTAGAACAGCA+AGG + chr7_3:57676627-57676646 None:intergenic 40.0%
ATGGGTGATGTGGGATTTAT+TGG - chr7_3:57676770-57676789 Msa1111920:exon 40.0%
TGGAGGATTAAAACGCAGAA+GGG + chr7_3:57676858-57676877 None:intergenic 40.0%
ATGGAGGATTAAAACGCAGA+AGG + chr7_3:57676859-57676878 None:intergenic 40.0%
!! CTGCGTTTTAATCCTCCATT+TGG - chr7_3:57676860-57676879 Msa1111920:CDS 40.0%
AACTGAGGTTGCGGAAATAA+TGG + chr7_3:57676914-57676933 None:intergenic 40.0%
!! GTTTCAACCTTTGAGGCAAA+TGG + chr7_3:57676970-57676989 None:intergenic 40.0%
!! GAAACTTAGCTTTGTTGGAG+GGG - chr7_3:57676985-57677004 Msa1111920:CDS 40.0%
TTCTGAATGGTTGGAGATCA+AGG - chr7_3:57677116-57677135 Msa1111920:CDS 40.0%
TCTGAATGGTTGGAGATCAA+GGG - chr7_3:57677117-57677136 Msa1111920:CDS 40.0%
CTTGAAAGGAAACTGTGGAT+CGG + chr7_3:57677149-57677168 None:intergenic 40.0%
AGAACCTTGAAAGGAAACTG+TGG + chr7_3:57677154-57677173 None:intergenic 40.0%
!!! TTCTGCTGTTTTAGGTGACA+TGG - chr7_3:57677198-57677217 Msa1111920:CDS 40.0%
!! TTTTAGGTGACATGGCTACT+AGG - chr7_3:57677206-57677225 Msa1111920:CDS 40.0%
! ATGGCTACTAGGCCTAATTT+TGG - chr7_3:57677217-57677236 Msa1111920:CDS 40.0%
! TGGCTACTAGGCCTAATTTT+GGG - chr7_3:57677218-57677237 Msa1111920:CDS 40.0%
TATCTGTTGGCACCAACATT+GGG - chr7_3:57677307-57677326 Msa1111920:CDS 40.0%
GGTTCAAACATGTGACTCTT+AGG + chr7_3:57677373-57677392 None:intergenic 40.0%
AAGAGTCACATGTTTGAACC+TGG - chr7_3:57677373-57677392 Msa1111920:CDS 40.0%
ACCTGGTGCCTATAGTTTAT+TGG - chr7_3:57677390-57677409 Msa1111920:CDS 40.0%
TCCAATAAACTATAGGCACC+AGG + chr7_3:57677394-57677413 None:intergenic 40.0%
! ATTTTTGCCATTGTTGGGCT+AGG - chr7_3:57677445-57677464 Msa1111920:CDS 40.0%
GTTGGAACAGCACTTTCAAA+TGG - chr7_3:57677478-57677497 Msa1111920:CDS 40.0%
AACAGCACTTTCAAATGGGT+TGG - chr7_3:57677483-57677502 Msa1111920:CDS 40.0%
ATTGCTGAATGGTCTCACTT+GGG - chr7_3:57677564-57677583 Msa1111920:CDS 40.0%
TCAGGTACCAAACTCTCAAT+GGG - chr7_3:57677614-57677633 Msa1111920:CDS 40.0%
!! GGAGAAAGTGCTTAATCCTT+TGG - chr7_3:57677651-57677670 Msa1111920:CDS 40.0%
! GGGAATGACTTTTGTGATGT+TGG - chr7_3:57677723-57677742 Msa1111920:CDS 40.0%
! TGACTTTTGTGATGTTGGCA+AGG - chr7_3:57677728-57677747 Msa1111920:CDS 40.0%
TGAGAAGAAGCCATCACAAT+TGG - chr7_3:57677774-57677793 Msa1111920:intron 40.0%
AATCCAACCTCCAATTGTGA+TGG + chr7_3:57677787-57677806 None:intergenic 40.0%
TCACAATTGGAGGTTGGATT+AGG - chr7_3:57677787-57677806 Msa1111920:intron 40.0%
GATTAGGTGAGAAGGTTGAA+AGG - chr7_3:57677803-57677822 Msa1111920:intron 40.0%
!! TCGCTTTGTTGGTGTTGTTT+GGG + chr7_3:57677853-57677872 None:intergenic 40.0%
!! ATCGCTTTGTTGGTGTTGTT+TGG + chr7_3:57677854-57677873 None:intergenic 40.0%
GATTGAAGCTATCGCTTTGT+TGG + chr7_3:57677864-57677883 None:intergenic 40.0%
CTGAAAGAGTTTGTCAGAGT+AGG + chr7_3:57677968-57677987 None:intergenic 40.0%
GTATGTAGCGTAGATTGAGA+TGG - chr7_3:57677998-57678017 Msa1111920:intron 40.0%
ATGTAGCGTAGATTGAGATG+GGG - chr7_3:57678000-57678019 Msa1111920:intron 40.0%
! GGGGATTTGGAATAAGTTTC+TGG - chr7_3:57678020-57678039 Msa1111920:intron 40.0%
GGAGACCAAAATCCAATACA+TGG + chr7_3:57678110-57678129 None:intergenic 40.0%
TATCTTTGGCTGCTACATTG+AGG - chr7_3:57676350-57676369 Msa1111920:three_prime_UTR 40.0%
GGATACACCATAGTTATGTG+AGG - chr7_3:57676396-57676415 Msa1111920:three_prime_UTR 40.0%
GTGAGGATCAGATAATCCAA+AGG - chr7_3:57676413-57676432 Msa1111920:three_prime_UTR 40.0%
CCACAAAAACTTGTAGCCTT+TGG + chr7_3:57676432-57676451 None:intergenic 40.0%
! CCAAAGGCTACAAGTTTTTG+TGG - chr7_3:57676429-57676448 Msa1111920:three_prime_UTR 40.0%
ACATGGTGTTCATCTATTGG+CGG + chr7_3:57676485-57676504 None:intergenic 40.0%
!! TACCTTGCTGTTCTAGAATC+AGG - chr7_3:57676622-57676641 Msa1111920:three_prime_UTR 40.0%
!! TACCTGATTCTAGAACAGCA+AGG + chr7_3:57676627-57676646 None:intergenic 40.0%
ATGGGTGATGTGGGATTTAT+TGG - chr7_3:57676770-57676789 Msa1111920:exon 40.0%
TGGAGGATTAAAACGCAGAA+GGG + chr7_3:57676858-57676877 None:intergenic 40.0%
ATGGAGGATTAAAACGCAGA+AGG + chr7_3:57676859-57676878 None:intergenic 40.0%
!! CTGCGTTTTAATCCTCCATT+TGG - chr7_3:57676860-57676879 Msa1111920:CDS 40.0%
AACTGAGGTTGCGGAAATAA+TGG + chr7_3:57676914-57676933 None:intergenic 40.0%
!! GTTTCAACCTTTGAGGCAAA+TGG + chr7_3:57676970-57676989 None:intergenic 40.0%
!! GAAACTTAGCTTTGTTGGAG+GGG - chr7_3:57676985-57677004 Msa1111920:CDS 40.0%
TTCTGAATGGTTGGAGATCA+AGG - chr7_3:57677116-57677135 Msa1111920:CDS 40.0%
TCTGAATGGTTGGAGATCAA+GGG - chr7_3:57677117-57677136 Msa1111920:CDS 40.0%
CTTGAAAGGAAACTGTGGAT+CGG + chr7_3:57677149-57677168 None:intergenic 40.0%
AGAACCTTGAAAGGAAACTG+TGG + chr7_3:57677154-57677173 None:intergenic 40.0%
!!! TTCTGCTGTTTTAGGTGACA+TGG - chr7_3:57677198-57677217 Msa1111920:CDS 40.0%
!! TTTTAGGTGACATGGCTACT+AGG - chr7_3:57677206-57677225 Msa1111920:CDS 40.0%
! ATGGCTACTAGGCCTAATTT+TGG - chr7_3:57677217-57677236 Msa1111920:CDS 40.0%
! TGGCTACTAGGCCTAATTTT+GGG - chr7_3:57677218-57677237 Msa1111920:CDS 40.0%
TATCTGTTGGCACCAACATT+GGG - chr7_3:57677307-57677326 Msa1111920:CDS 40.0%
GGTTCAAACATGTGACTCTT+AGG + chr7_3:57677373-57677392 None:intergenic 40.0%
AAGAGTCACATGTTTGAACC+TGG - chr7_3:57677373-57677392 Msa1111920:CDS 40.0%
ACCTGGTGCCTATAGTTTAT+TGG - chr7_3:57677390-57677409 Msa1111920:CDS 40.0%
TCCAATAAACTATAGGCACC+AGG + chr7_3:57677394-57677413 None:intergenic 40.0%
! ATTTTTGCCATTGTTGGGCT+AGG - chr7_3:57677445-57677464 Msa1111920:CDS 40.0%
GTTGGAACAGCACTTTCAAA+TGG - chr7_3:57677478-57677497 Msa1111920:CDS 40.0%
AACAGCACTTTCAAATGGGT+TGG - chr7_3:57677483-57677502 Msa1111920:CDS 40.0%
ATTGCTGAATGGTCTCACTT+GGG - chr7_3:57677564-57677583 Msa1111920:CDS 40.0%
TCAGGTACCAAACTCTCAAT+GGG - chr7_3:57677614-57677633 Msa1111920:CDS 40.0%
!! GGAGAAAGTGCTTAATCCTT+TGG - chr7_3:57677651-57677670 Msa1111920:CDS 40.0%
! GGGAATGACTTTTGTGATGT+TGG - chr7_3:57677723-57677742 Msa1111920:CDS 40.0%
! TGACTTTTGTGATGTTGGCA+AGG - chr7_3:57677728-57677747 Msa1111920:CDS 40.0%
TGAGAAGAAGCCATCACAAT+TGG - chr7_3:57677774-57677793 Msa1111920:intron 40.0%
AATCCAACCTCCAATTGTGA+TGG + chr7_3:57677787-57677806 None:intergenic 40.0%
TCACAATTGGAGGTTGGATT+AGG - chr7_3:57677787-57677806 Msa1111920:intron 40.0%
GATTAGGTGAGAAGGTTGAA+AGG - chr7_3:57677803-57677822 Msa1111920:intron 40.0%
!! TCGCTTTGTTGGTGTTGTTT+GGG + chr7_3:57677853-57677872 None:intergenic 40.0%
!! ATCGCTTTGTTGGTGTTGTT+TGG + chr7_3:57677854-57677873 None:intergenic 40.0%
GATTGAAGCTATCGCTTTGT+TGG + chr7_3:57677864-57677883 None:intergenic 40.0%
CTGAAAGAGTTTGTCAGAGT+AGG + chr7_3:57677968-57677987 None:intergenic 40.0%
GTATGTAGCGTAGATTGAGA+TGG - chr7_3:57677998-57678017 Msa1111920:intron 40.0%
ATGTAGCGTAGATTGAGATG+GGG - chr7_3:57678000-57678019 Msa1111920:intron 40.0%
! GGGGATTTGGAATAAGTTTC+TGG - chr7_3:57678020-57678039 Msa1111920:intron 40.0%
GGAGACCAAAATCCAATACA+TGG + chr7_3:57678110-57678129 None:intergenic 40.0%
TTTGGCTGCTACATTGAGGA+AGG - chr7_3:57676354-57676373 Msa1111920:three_prime_UTR 45.0%
GAAGGAGAACGAATCTGCTA+TGG - chr7_3:57676372-57676391 Msa1111920:three_prime_UTR 45.0%
AGTGCATGACTCTGACCAAA+TGG + chr7_3:57676878-57676897 None:intergenic 45.0%
!! TTGAGGCAAATGGGTTGGTT+TGG + chr7_3:57676960-57676979 None:intergenic 45.0%
AACCAACCCATTTGCCTCAA+AGG - chr7_3:57676960-57676979 Msa1111920:CDS 45.0%
!! AACCTTTGAGGCAAATGGGT+TGG + chr7_3:57676965-57676984 None:intergenic 45.0%
!! TGGTGGTGGAGATGGAAATT+CGG - chr7_3:57677042-57677061 Msa1111920:CDS 45.0%
TGGGTACGTTTCTGAATGGT+TGG - chr7_3:57677107-57677126 Msa1111920:CDS 45.0%
CGATCCACAGTTTCCTTTCA+AGG - chr7_3:57677147-57677166 Msa1111920:CDS 45.0%
!!! GGTGTCAGTTCTGCTGTTTT+AGG - chr7_3:57677190-57677209 Msa1111920:CDS 45.0%
GTATCTGTTGGCACCAACAT+TGG - chr7_3:57677306-57677325 Msa1111920:CDS 45.0%
ACTGTAGCAGATCCCAATGT+TGG + chr7_3:57677322-57677341 None:intergenic 45.0%
ATCTGCTACAGTCAAAGTGC+CGG - chr7_3:57677330-57677349 Msa1111920:CDS 45.0%
GGACAAGATGCAAAGATAGC+CGG + chr7_3:57677352-57677371 None:intergenic 45.0%
TTGTTTGGGGACTCAAAGCT+GGG + chr7_3:57677532-57677551 None:intergenic 45.0%
! ATGTAGGTGGAGGCTTGTTT+GGG + chr7_3:57677546-57677565 None:intergenic 45.0%
! AATGTAGGTGGAGGCTTGTT+TGG + chr7_3:57677547-57677566 None:intergenic 45.0%
AGACCATTCAGCAATGTAGG+TGG + chr7_3:57677559-57677578 None:intergenic 45.0%
GTGAGACCATTCAGCAATGT+AGG + chr7_3:57677562-57677581 None:intergenic 45.0%
CATTGCTGAATGGTCTCACT+TGG - chr7_3:57677563-57677582 Msa1111920:CDS 45.0%
CATTGAGAGTTTGGTACCTG+AGG + chr7_3:57677615-57677634 None:intergenic 45.0%
CTCAGGTACCAAACTCTCAA+TGG - chr7_3:57677613-57677632 Msa1111920:CDS 45.0%
CAGGTACCAAACTCTCAATG+GGG - chr7_3:57677615-57677634 Msa1111920:CDS 45.0%
ACTCAACCCCATTGAGAGTT+TGG + chr7_3:57677624-57677643 None:intergenic 45.0%
CAATGGGGTTGAGTTCATGT+TGG - chr7_3:57677630-57677649 Msa1111920:CDS 45.0%
ACTGCGGTCTTGAATACCAA+AGG + chr7_3:57677670-57677689 None:intergenic 45.0%
AGGTGTGCGAACAATGTTCT+TGG - chr7_3:57677700-57677719 Msa1111920:CDS 45.0%
GGTGTGCGAACAATGTTCTT+GGG - chr7_3:57677701-57677720 Msa1111920:CDS 45.0%
GTGTGCGAACAATGTTCTTG+GGG - chr7_3:57677702-57677721 Msa1111920:CDS 45.0%
TGTGCGAACAATGTTCTTGG+GGG - chr7_3:57677703-57677722 Msa1111920:CDS 45.0%
TGATGTTGGCAAGGTTGACA+GGG - chr7_3:57677737-57677756 Msa1111920:CDS 45.0%
TTGACAGGGTCACAAAATGC+TGG - chr7_3:57677751-57677770 Msa1111920:CDS 45.0%
GAAGAAGCCATCACAATTGG+AGG - chr7_3:57677777-57677796 Msa1111920:intron 45.0%
AAGCCATCACAATTGGAGGT+TGG - chr7_3:57677781-57677800 Msa1111920:intron 45.0%
TGTAGCGTAGATTGAGATGG+GGG - chr7_3:57678001-57678020 Msa1111920:intron 45.0%
GTAGATTGAGATGGGGGATT+TGG - chr7_3:57678007-57678026 Msa1111920:intron 45.0%
TTTGGCTGCTACATTGAGGA+AGG - chr7_3:57676354-57676373 Msa1111920:three_prime_UTR 45.0%
GAAGGAGAACGAATCTGCTA+TGG - chr7_3:57676372-57676391 Msa1111920:three_prime_UTR 45.0%
AGTGCATGACTCTGACCAAA+TGG + chr7_3:57676878-57676897 None:intergenic 45.0%
!! TTGAGGCAAATGGGTTGGTT+TGG + chr7_3:57676960-57676979 None:intergenic 45.0%
AACCAACCCATTTGCCTCAA+AGG - chr7_3:57676960-57676979 Msa1111920:CDS 45.0%
!! AACCTTTGAGGCAAATGGGT+TGG + chr7_3:57676965-57676984 None:intergenic 45.0%
!! TGGTGGTGGAGATGGAAATT+CGG - chr7_3:57677042-57677061 Msa1111920:CDS 45.0%
TGGGTACGTTTCTGAATGGT+TGG - chr7_3:57677107-57677126 Msa1111920:CDS 45.0%
CGATCCACAGTTTCCTTTCA+AGG - chr7_3:57677147-57677166 Msa1111920:CDS 45.0%
!!! GGTGTCAGTTCTGCTGTTTT+AGG - chr7_3:57677190-57677209 Msa1111920:CDS 45.0%
GTATCTGTTGGCACCAACAT+TGG - chr7_3:57677306-57677325 Msa1111920:CDS 45.0%
ACTGTAGCAGATCCCAATGT+TGG + chr7_3:57677322-57677341 None:intergenic 45.0%
ATCTGCTACAGTCAAAGTGC+CGG - chr7_3:57677330-57677349 Msa1111920:CDS 45.0%
GGACAAGATGCAAAGATAGC+CGG + chr7_3:57677352-57677371 None:intergenic 45.0%
TTGTTTGGGGACTCAAAGCT+GGG + chr7_3:57677532-57677551 None:intergenic 45.0%
! ATGTAGGTGGAGGCTTGTTT+GGG + chr7_3:57677546-57677565 None:intergenic 45.0%
! AATGTAGGTGGAGGCTTGTT+TGG + chr7_3:57677547-57677566 None:intergenic 45.0%
AGACCATTCAGCAATGTAGG+TGG + chr7_3:57677559-57677578 None:intergenic 45.0%
GTGAGACCATTCAGCAATGT+AGG + chr7_3:57677562-57677581 None:intergenic 45.0%
CATTGCTGAATGGTCTCACT+TGG - chr7_3:57677563-57677582 Msa1111920:CDS 45.0%
CATTGAGAGTTTGGTACCTG+AGG + chr7_3:57677615-57677634 None:intergenic 45.0%
CTCAGGTACCAAACTCTCAA+TGG - chr7_3:57677613-57677632 Msa1111920:CDS 45.0%
CAGGTACCAAACTCTCAATG+GGG - chr7_3:57677615-57677634 Msa1111920:CDS 45.0%
ACTCAACCCCATTGAGAGTT+TGG + chr7_3:57677624-57677643 None:intergenic 45.0%
CAATGGGGTTGAGTTCATGT+TGG - chr7_3:57677630-57677649 Msa1111920:CDS 45.0%
ACTGCGGTCTTGAATACCAA+AGG + chr7_3:57677670-57677689 None:intergenic 45.0%
AGGTGTGCGAACAATGTTCT+TGG - chr7_3:57677700-57677719 Msa1111920:CDS 45.0%
GGTGTGCGAACAATGTTCTT+GGG - chr7_3:57677701-57677720 Msa1111920:CDS 45.0%
GTGTGCGAACAATGTTCTTG+GGG - chr7_3:57677702-57677721 Msa1111920:CDS 45.0%
TGTGCGAACAATGTTCTTGG+GGG - chr7_3:57677703-57677722 Msa1111920:CDS 45.0%
TGATGTTGGCAAGGTTGACA+GGG - chr7_3:57677737-57677756 Msa1111920:CDS 45.0%
TTGACAGGGTCACAAAATGC+TGG - chr7_3:57677751-57677770 Msa1111920:CDS 45.0%
GAAGAAGCCATCACAATTGG+AGG - chr7_3:57677777-57677796 Msa1111920:intron 45.0%
AAGCCATCACAATTGGAGGT+TGG - chr7_3:57677781-57677800 Msa1111920:intron 45.0%
TGTAGCGTAGATTGAGATGG+GGG - chr7_3:57678001-57678020 Msa1111920:intron 45.0%
GTAGATTGAGATGGGGGATT+TGG - chr7_3:57678007-57678026 Msa1111920:intron 45.0%
GGAGAACGAATCTGCTATGG+AGG - chr7_3:57676375-57676394 Msa1111920:three_prime_UTR 50.0%
GCATGACTCTGACCAAATGG+AGG + chr7_3:57676875-57676894 None:intergenic 50.0%
!! CTTAGCTTTGTTGGAGGGGA+TGG - chr7_3:57676989-57677008 Msa1111920:CDS 50.0%
!! GGTGGTGGAGATGGAAATTC+GGG - chr7_3:57677043-57677062 Msa1111920:CDS 50.0%
GGAAATTCGGGAGGTGATGA+TGG - chr7_3:57677055-57677074 Msa1111920:CDS 50.0%
!! GGAGGTGATGATGGAAAGTC+AGG - chr7_3:57677064-57677083 Msa1111920:CDS 50.0%
!! TCCTTTCAAGGTTCTGAGCG+AGG - chr7_3:57677159-57677178 Msa1111920:CDS 50.0%
TCCTCGCTCAGAACCTTGAA+AGG + chr7_3:57677163-57677182 None:intergenic 50.0%
!! CAAATGGGTTGGTCAGTACG+AGG - chr7_3:57677494-57677513 Msa1111920:CDS 50.0%
GGTCAGTACGAGGAAGAAGA+TGG - chr7_3:57677504-57677523 Msa1111920:CDS 50.0%
CTTGTTTGGGGACTCAAAGC+TGG + chr7_3:57677533-57677552 None:intergenic 50.0%
! TGTAGGTGGAGGCTTGTTTG+GGG + chr7_3:57677545-57677564 None:intergenic 50.0%
CCATTCAGCAATGTAGGTGG+AGG + chr7_3:57677556-57677575 None:intergenic 50.0%
CCTCCACCTACATTGCTGAA+TGG - chr7_3:57677553-57677572 Msa1111920:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG - chr7_3:57677576-57677595 Msa1111920:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG - chr7_3:57677577-57677596 Msa1111920:CDS 50.0%
GGTATTCAAGACCGCAGTTG+TGG - chr7_3:57677672-57677691 Msa1111920:CDS 50.0%
ACACCTGAGAACCACAACTG+CGG + chr7_3:57677686-57677705 None:intergenic 50.0%
GTGATGTTGGCAAGGTTGAC+AGG - chr7_3:57677736-57677755 Msa1111920:CDS 50.0%
! GGAGGTTGGATTAGGTGAGA+AGG - chr7_3:57677795-57677814 Msa1111920:intron 50.0%
CAAGGTTGTTGTAGAGCTCG+CGG - chr7_3:57677910-57677929 Msa1111920:intron 50.0%
GGAGAACGAATCTGCTATGG+AGG - chr7_3:57676375-57676394 Msa1111920:three_prime_UTR 50.0%
GCATGACTCTGACCAAATGG+AGG + chr7_3:57676875-57676894 None:intergenic 50.0%
!! CTTAGCTTTGTTGGAGGGGA+TGG - chr7_3:57676989-57677008 Msa1111920:CDS 50.0%
!! GGTGGTGGAGATGGAAATTC+GGG - chr7_3:57677043-57677062 Msa1111920:CDS 50.0%
GGAAATTCGGGAGGTGATGA+TGG - chr7_3:57677055-57677074 Msa1111920:CDS 50.0%
!! GGAGGTGATGATGGAAAGTC+AGG - chr7_3:57677064-57677083 Msa1111920:CDS 50.0%
!! TCCTTTCAAGGTTCTGAGCG+AGG - chr7_3:57677159-57677178 Msa1111920:CDS 50.0%
TCCTCGCTCAGAACCTTGAA+AGG + chr7_3:57677163-57677182 None:intergenic 50.0%
!! CAAATGGGTTGGTCAGTACG+AGG - chr7_3:57677494-57677513 Msa1111920:CDS 50.0%
GGTCAGTACGAGGAAGAAGA+TGG - chr7_3:57677504-57677523 Msa1111920:CDS 50.0%
CTTGTTTGGGGACTCAAAGC+TGG + chr7_3:57677533-57677552 None:intergenic 50.0%
! TGTAGGTGGAGGCTTGTTTG+GGG + chr7_3:57677545-57677564 None:intergenic 50.0%
CCATTCAGCAATGTAGGTGG+AGG + chr7_3:57677556-57677575 None:intergenic 50.0%
CCTCCACCTACATTGCTGAA+TGG - chr7_3:57677553-57677572 Msa1111920:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG - chr7_3:57677576-57677595 Msa1111920:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG - chr7_3:57677577-57677596 Msa1111920:CDS 50.0%
GGTATTCAAGACCGCAGTTG+TGG - chr7_3:57677672-57677691 Msa1111920:CDS 50.0%
ACACCTGAGAACCACAACTG+CGG + chr7_3:57677686-57677705 None:intergenic 50.0%
GTGATGTTGGCAAGGTTGAC+AGG - chr7_3:57677736-57677755 Msa1111920:CDS 50.0%
! GGAGGTTGGATTAGGTGAGA+AGG - chr7_3:57677795-57677814 Msa1111920:intron 50.0%
CAAGGTTGTTGTAGAGCTCG+CGG - chr7_3:57677910-57677929 Msa1111920:intron 50.0%
!! AGCTTTGTTGGAGGGGATGG+TGG - chr7_3:57676992-57677011 Msa1111920:CDS 55.0%
! TTTGTTGGAGGGGATGGTGG+TGG - chr7_3:57676995-57677014 Msa1111920:CDS 55.0%
! TTGTTGGAGGGGATGGTGGT+GGG - chr7_3:57676996-57677015 Msa1111920:CDS 55.0%
GGTGGAGATGGAAATTCGGG+AGG - chr7_3:57677046-57677065 Msa1111920:CDS 55.0%
!! CAAGGTTCTGAGCGAGGAGT+TGG - chr7_3:57677165-57677184 Msa1111920:CDS 55.0%
! GTTCTGAGCGAGGAGTTGGT+TGG - chr7_3:57677169-57677188 Msa1111920:CDS 55.0%
ACCAGCACCTAGCCCAACAA+TGG + chr7_3:57677455-57677474 None:intergenic 55.0%
TGGGTTTCAGCAGCAACCTC+AGG - chr7_3:57677596-57677615 Msa1111920:CDS 55.0%
AGACCGCAGTTGTGGTTCTC+AGG - chr7_3:57677680-57677699 Msa1111920:CDS 55.0%
CGCGAGCTCTACAACAACCT+TGG + chr7_3:57677912-57677931 None:intergenic 55.0%
!! AGCTTTGTTGGAGGGGATGG+TGG - chr7_3:57676992-57677011 Msa1111920:CDS 55.0%
! TTTGTTGGAGGGGATGGTGG+TGG - chr7_3:57676995-57677014 Msa1111920:CDS 55.0%
! TTGTTGGAGGGGATGGTGGT+GGG - chr7_3:57676996-57677015 Msa1111920:CDS 55.0%
GGTGGAGATGGAAATTCGGG+AGG - chr7_3:57677046-57677065 Msa1111920:CDS 55.0%
!! CAAGGTTCTGAGCGAGGAGT+TGG - chr7_3:57677165-57677184 Msa1111920:CDS 55.0%
! GTTCTGAGCGAGGAGTTGGT+TGG - chr7_3:57677169-57677188 Msa1111920:CDS 55.0%
ACCAGCACCTAGCCCAACAA+TGG + chr7_3:57677455-57677474 None:intergenic 55.0%
TGGGTTTCAGCAGCAACCTC+AGG - chr7_3:57677596-57677615 Msa1111920:CDS 55.0%
AGACCGCAGTTGTGGTTCTC+AGG - chr7_3:57677680-57677699 Msa1111920:CDS 55.0%
CGCGAGCTCTACAACAACCT+TGG + chr7_3:57677912-57677931 None:intergenic 55.0%
! TGTTGGAGGGGATGGTGGTG+GGG - chr7_3:57676997-57677016 Msa1111920:CDS 60.0%
! GCCATTGTTGGGCTAGGTGC+TGG - chr7_3:57677451-57677470 Msa1111920:CDS 60.0%
!! GGGCTAGGTGCTGGTCTTGT+TGG - chr7_3:57677460-57677479 Msa1111920:CDS 60.0%
! TGTTGGAGGGGATGGTGGTG+GGG - chr7_3:57676997-57677016 Msa1111920:CDS 60.0%
! GCCATTGTTGGGCTAGGTGC+TGG - chr7_3:57677451-57677470 Msa1111920:CDS 60.0%
!! GGGCTAGGTGCTGGTCTTGT+TGG - chr7_3:57677460-57677479 Msa1111920:CDS 60.0%
!! GTTGGAGGGGATGGTGGTGG+GGG - chr7_3:57676998-57677017 Msa1111920:CDS 65.0%
!! GGAGTTGGTCGTGGTGGTGG+TGG - chr7_3:57677019-57677038 Msa1111920:CDS 65.0%
!! GTTGGTCGTGGTGGTGGTGG+TGG - chr7_3:57677022-57677041 Msa1111920:CDS 65.0%
!! GGTGGTGGTGGTGGTGGAGA+TGG - chr7_3:57677034-57677053 Msa1111920:CDS 65.0%
!! GTTGGAGGGGATGGTGGTGG+GGG - chr7_3:57676998-57677017 Msa1111920:CDS 65.0%
!! GGAGTTGGTCGTGGTGGTGG+TGG - chr7_3:57677019-57677038 Msa1111920:CDS 65.0%
!! GTTGGTCGTGGTGGTGGTGG+TGG - chr7_3:57677022-57677041 Msa1111920:CDS 65.0%
!! GGTGGTGGTGGTGGTGGAGA+TGG - chr7_3:57677034-57677053 Msa1111920:CDS 65.0%
!! GGGGATGGTGGTGGGGGAGT+TGG - chr7_3:57677004-57677023 Msa1111920:CDS 70.0%
!! GGTGGTGGGGGAGTTGGTCG+TGG - chr7_3:57677010-57677029 Msa1111920:CDS 70.0%
! GGTGGGGGAGTTGGTCGTGG+TGG - chr7_3:57677013-57677032 Msa1111920:CDS 70.0%
! GGGGGAGTTGGTCGTGGTGG+TGG - chr7_3:57677016-57677035 Msa1111920:CDS 70.0%
!! GGTCGTGGTGGTGGTGGTGG+TGG - chr7_3:57677025-57677044 Msa1111920:CDS 70.0%
!! CGTGGTGGTGGTGGTGGTGG+TGG - chr7_3:57677028-57677047 Msa1111920:CDS 70.0%
!! GGGGATGGTGGTGGGGGAGT+TGG - chr7_3:57677004-57677023 Msa1111920:CDS 70.0%
!! GGTGGTGGGGGAGTTGGTCG+TGG - chr7_3:57677010-57677029 Msa1111920:CDS 70.0%
! GGTGGGGGAGTTGGTCGTGG+TGG - chr7_3:57677013-57677032 Msa1111920:CDS 70.0%
! GGGGGAGTTGGTCGTGGTGG+TGG - chr7_3:57677016-57677035 Msa1111920:CDS 70.0%
!! GGTCGTGGTGGTGGTGGTGG+TGG - chr7_3:57677025-57677044 Msa1111920:CDS 70.0%
!! CGTGGTGGTGGTGGTGGTGG+TGG - chr7_3:57677028-57677047 Msa1111920:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 57676331 57678281 57676331 ID=Msa1111920;Name=Msa1111920
chr7_3 mRNA 57676331 57678281 57676331 ID=Msa1111920-mRNA-1;Parent=Msa1111920;Name=Msa1111920-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.33|0.66|1|1|3|453|341
chr7_3 exon 57676331 57677775 57676331 ID=Msa1111920-mRNA-1:exon:12556;Parent=Msa1111920-mRNA-1
chr7_3 exon 57677969 57677994 57677969 ID=Msa1111920-mRNA-1:exon:12555;Parent=Msa1111920-mRNA-1
chr7_3 exon 57678274 57678281 57678274 ID=Msa1111920-mRNA-1:exon:12554;Parent=Msa1111920-mRNA-1
chr7_3 CDS 57678274 57678281 57678274 ID=Msa1111920-mRNA-1:cds;Parent=Msa1111920-mRNA-1
chr7_3 CDS 57677969 57677994 57677969 ID=Msa1111920-mRNA-1:cds;Parent=Msa1111920-mRNA-1
chr7_3 CDS 57676784 57677775 57676784 ID=Msa1111920-mRNA-1:cds;Parent=Msa1111920-mRNA-1
chr7_3 three_prime_UTR 57676331 57676783 57676331 ID=Msa1111920-mRNA-1:three_prime_utr;Parent=Msa1111920-mRNA-1
Gene Sequence

>Msa1111920

ATGTTCAGGTTTTACCTTGCTGTTCTAGAATCAGATCAAATGGAAACTATGGCCCTTCTGCGTTTTAATCCTCCATTTGGTCAGAGTCATGCACTTTCGTTTTCATTACCATTATTTCCGCAACCTCAGTTTCATAATTGTTCTATATATCTTACCAAACCAACCCATTTGCCTCAAAGGTTGAAACTTAGCTTTGTTGGAGGGGATGGTGGTGGGGGAGTTGGTCGTGGTGGTGGTGGTGGTGGTGGAGATGGAAATTCGGGAGGTGATGATGGAAAGTCAGGTGATTCATCTTTTGGAATTTTGGGTACGTTTCTGAATGGTTGGAGATCAAGGGTTGCTGCCGATCCACAGTTTCCTTTCAAGGTTCTGAGCGAGGAGTTGGTTGGTGTCAGTTCTGCTGTTTTAGGTGACATGGCTACTAGGCCTAATTTTGGGTTGAATGAACTTGACTTTGTTTTTTCAACTCTTGTTGTTGGTGCTATTCTCAATTTTACACTCATGTATCTGTTGGCACCAACATTGGGATCTGCTACAGTCAAAGTGCCGGCTATCTTTGCATCTTGTCCTAAGAGTCACATGTTTGAACCTGGTGCCTATAGTTTATTGGATAGGTTTGGAACTTTGGTGTATAAAGGAACTATTTTTGCCATTGTTGGGCTAGGTGCTGGTCTTGTTGGAACAGCACTTTCAAATGGGTTGGTCAGTACGAGGAAGAAGATGGATCCCAGCTTTGAGTCCCCAAACAAGCCTCCACCTACATTGCTGAATGGTCTCACTTGGGCTGCTCATATGGGTTTCAGCAGCAACCTCAGGTACCAAACTCTCAATGGGGTTGAGTTCATGTTGGAGAAAGTGCTTAATCCTTTGGTATTCAAGACCGCAGTTGTGGTTCTCAGGTGTGCGAACAATGTTCTTGGGGGAATGACTTTTGTGATGTTGGCAAGGTTGACAGGGTCACAAAATGCTGGTGAGAAGAAGCCATCACAATTGGAGGTTGGATTAGGTGAGAAGGTTGAAAGGTAA
Protein sequence

>Msa1111920

MFRFYLAVLESDQMETMALLRFNPPFGQSHALSFSLPLFPQPQFHNCSIYLTKPTHLPQRLKLSFVGGDGGGGVGRGGGGGGGDGNSGGDDGKSGDSSFGILGTFLNGWRSRVAADPQFPFKVLSEELVGVSSAVLGDMATRPNFGLNELDFVFSTLVVGAILNFTLMYLLAPTLGSATVKVPAIFASCPKSHMFEPGAYSLLDRFGTLVYKGTIFAIVGLGAGLVGTALSNGLVSTRKKMDPSFESPNKPPPTLLNGLTWAAHMGFSSNLRYQTLNGVEFMLEKVLNPLVFKTAVVVLRCANNVLGGMTFVMLARLTGSQNAGEKKPSQLEVGLGEKVER*