AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0444340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444340 MtrunA17_Chr3g0084331 97.765 179 4 0 1 179 1 179 9.42e-130 361
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444340 AT1G50900.1 82.308 130 22 1 51 179 46 175 2.23e-77 229

Find 50 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAAGAGTTCCTCAATTT+TGG 0.096587 3_3:+17262273 None:intergenic
TTTGCAGTACTTCAACTATA+TGG 0.189978 3_3:-17262404 Msa0444340:intron
GCTGAAGGTGCTGGTATTTA+TGG 0.229748 3_3:-17263353 Msa0444340:CDS
TATGCAGCACTGACACTTAA+AGG 0.234259 3_3:-17261971 Msa0444340:three_prime_UTR
AGAAACTTGTGAAGTGATTA+AGG 0.234288 3_3:+17263520 None:intergenic
TCAAGCTTCACCTCTAAATT+TGG 0.237887 3_3:-17263434 Msa0444340:CDS
ATTTCATATGATTTGGCCTT+TGG 0.261082 3_3:-17262071 Msa0444340:three_prime_UTR
CTATGTTATTTCATATGATT+TGG 0.267320 3_3:-17262078 Msa0444340:three_prime_UTR
TTGTCTTCTTCTCGATTTCT+TGG 0.301121 3_3:-17263488 Msa0444340:CDS
TCTAAATTTGGACCCTCTAA+TGG 0.320687 3_3:-17263422 Msa0444340:CDS
TGTCCACGGGGTGAATGTTT+TGG 0.329010 3_3:+17262332 None:intergenic
TGAAGGAACATATGATAAAA+TGG 0.336787 3_3:-17262368 Msa0444340:CDS
GTAGCTGAAATGGCATATAA+TGG 0.344041 3_3:+17262131 None:intergenic
TTCACATGTTGGTTCAAGTT+TGG 0.346966 3_3:-17263392 Msa0444340:CDS
TTGCAGTACTTCAACTATAT+GGG 0.353317 3_3:-17262403 Msa0444340:intron
TGATAGAGATGATGTTGAAC+AGG 0.397187 3_3:-17263309 Msa0444340:intron
GGATTTAGAATTTGAAATGA+TGG 0.407382 3_3:+17263541 None:intergenic
AAACAGCTATGTAGCTGAAA+TGG 0.420442 3_3:+17262121 None:intergenic
TGTGAATCTTGATCCATTAG+AGG 0.427156 3_3:+17263409 None:intergenic
ATTAGAGGGTCCAAATTTAG+AGG 0.445662 3_3:+17263424 None:intergenic
ATGGGGATGCTCGCCGTTGA+AGG 0.452381 3_3:-17262385 Msa0444340:CDS
GGTATTAGAGTTAAGAGTGT+TGG 0.475847 3_3:-17263467 Msa0444340:CDS
ATGGACGGACAGCGTTGGAT+AGG 0.482442 3_3:-17262219 Msa0444340:CDS
TATCAAAATCATCACGAGAC+TGG 0.487504 3_3:+17263327 None:intergenic
TCGAGAAGAAGACAAGTTTG+TGG 0.503459 3_3:+17263496 None:intergenic
TTTATCATATGTTCCTTCAA+CGG 0.514924 3_3:+17262372 None:intergenic
TAGAATTTGAAATGATGGGT+TGG 0.518105 3_3:+17263546 None:intergenic
ATGGATCAAGATTCACATGT+TGG 0.527417 3_3:-17263403 Msa0444340:CDS
AGGTGACTTGCCCAAAATTG+AGG 0.527850 3_3:-17262284 Msa0444340:CDS
TGGACGGACAGCGTTGGATA+GGG 0.531515 3_3:-17262218 Msa0444340:CDS
TGCAGTACTTCAACTATATG+GGG 0.549121 3_3:-17262402 Msa0444340:intron
GATTTAGAATTTGAAATGAT+GGG 0.552146 3_3:+17263542 None:intergenic
ATTGAGGAACTCTTGAAAGC+GGG 0.563783 3_3:-17262268 Msa0444340:CDS
GGTGTTGATGCTGAAGGTGC+TGG 0.568178 3_3:-17263362 Msa0444340:CDS
CGCAGATGGACGGACAGCGT+TGG 0.577773 3_3:-17262224 Msa0444340:CDS
AACAACAGTAGAATGTCCAC+GGG 0.593704 3_3:+17262319 None:intergenic
CATGCTAATAATGAATCCAA+AGG 0.599508 3_3:+17262055 None:intergenic
ATGTAAAAGACGCAGATGGA+CGG 0.600271 3_3:-17262234 Msa0444340:CDS
GTGAATCTTGATCCATTAGA+GGG 0.602773 3_3:+17263410 None:intergenic
TAACAACAGTAGAATGTCCA+CGG 0.603710 3_3:+17262318 None:intergenic
TATGATGTAAAAGACGCAGA+TGG 0.606140 3_3:-17262238 Msa0444340:CDS
AATTGAGGAACTCTTGAAAG+CGG 0.636086 3_3:-17262269 Msa0444340:CDS
TTAGAGTTAAGAGTGTTGGA+TGG 0.638432 3_3:-17263463 Msa0444340:CDS
CTGTTGTTAGCTGCATCCGA+AGG 0.640380 3_3:-17262304 Msa0444340:CDS
TATATCTATGATAGTCACAA+GGG 0.643596 3_3:+17262010 None:intergenic
GTATATCTATGATAGTCACA+AGG 0.656418 3_3:+17262009 None:intergenic
AGGAACATATGATAAAATGG+AGG 0.671636 3_3:-17262365 Msa0444340:CDS
AAGCCAAAACATTCACCCCG+TGG 0.724887 3_3:-17262335 Msa0444340:CDS
GTGTTTGAAACTGACACATG+TGG 0.753712 3_3:-17261923 Msa0444340:three_prime_UTR
ACAACAGTAGAATGTCCACG+GGG 0.853016 3_3:+17262320 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATAAAAGTATAAAAAAA+GGG + chr3_3:17262379-17262398 None:intergenic 10.0%
!!! AGATTTTTTTGTTTAAAAAA+TGG + chr3_3:17263018-17263037 None:intergenic 10.0%
!!! TGAATAAAAGTATAAAAAAA+GGG + chr3_3:17262379-17262398 None:intergenic 10.0%
!!! AGATTTTTTTGTTTAAAAAA+TGG + chr3_3:17263018-17263037 None:intergenic 10.0%
!!! GTGAATAAAAGTATAAAAAA+AGG + chr3_3:17262380-17262399 None:intergenic 15.0%
!! TAATAAAAAAATTGTGGAAA+GGG + chr3_3:17262568-17262587 None:intergenic 15.0%
!! TTAATAAAAAAATTGTGGAA+AGG + chr3_3:17262569-17262588 None:intergenic 15.0%
!!! GTAATTTAGAAATTTAGTTT+TGG - chr3_3:17263064-17263083 Msa0444340:intron 15.0%
!!! GTGAATAAAAGTATAAAAAA+AGG + chr3_3:17262380-17262399 None:intergenic 15.0%
!! TAATAAAAAAATTGTGGAAA+GGG + chr3_3:17262568-17262587 None:intergenic 15.0%
!! TTAATAAAAAAATTGTGGAA+AGG + chr3_3:17262569-17262588 None:intergenic 15.0%
!!! GTAATTTAGAAATTTAGTTT+TGG - chr3_3:17263064-17263083 Msa0444340:intron 15.0%
!!! GATTTAGAATTTGAAATGAT+GGG + chr3_3:17262000-17262019 None:intergenic 20.0%
!!! TAAAATCTATTTGTGTTACT+AGG + chr3_3:17262435-17262454 None:intergenic 20.0%
!! AATAAAAAAATTGTGGAAAG+GGG + chr3_3:17262567-17262586 None:intergenic 20.0%
!!! TTTTATAACTGCATAGAAAT+TGG - chr3_3:17262823-17262842 Msa0444340:intron 20.0%
!! TTTATAACTGCATAGAAATT+GGG - chr3_3:17262824-17262843 Msa0444340:intron 20.0%
!! TTATATTTCTTCCATAAAGA+TGG - chr3_3:17262901-17262920 Msa0444340:intron 20.0%
!!! AATTTTATGTTCCATCTTTA+TGG + chr3_3:17262915-17262934 None:intergenic 20.0%
!! TAAAGATGGAACATAAAATT+TGG - chr3_3:17262915-17262934 Msa0444340:intron 20.0%
!! AAAGATGGAACATAAAATTT+GGG - chr3_3:17262916-17262935 Msa0444340:intron 20.0%
!!! CTATGTTATTTCATATGATT+TGG - chr3_3:17263461-17263480 Msa0444340:CDS 20.0%
!!! GATTTAGAATTTGAAATGAT+GGG + chr3_3:17262000-17262019 None:intergenic 20.0%
!!! TAAAATCTATTTGTGTTACT+AGG + chr3_3:17262435-17262454 None:intergenic 20.0%
!! AATAAAAAAATTGTGGAAAG+GGG + chr3_3:17262567-17262586 None:intergenic 20.0%
!!! TTTTATAACTGCATAGAAAT+TGG - chr3_3:17262823-17262842 Msa0444340:intron 20.0%
!! TTTATAACTGCATAGAAATT+GGG - chr3_3:17262824-17262843 Msa0444340:intron 20.0%
!! TTATATTTCTTCCATAAAGA+TGG - chr3_3:17262901-17262920 Msa0444340:intron 20.0%
!!! AATTTTATGTTCCATCTTTA+TGG + chr3_3:17262915-17262934 None:intergenic 20.0%
!! TAAAGATGGAACATAAAATT+TGG - chr3_3:17262915-17262934 Msa0444340:intron 20.0%
!! AAAGATGGAACATAAAATTT+GGG - chr3_3:17262916-17262935 Msa0444340:intron 20.0%
!!! CTATGTTATTTCATATGATT+TGG - chr3_3:17263461-17263480 Msa0444340:CDS 20.0%
!! GGATTTAGAATTTGAAATGA+TGG + chr3_3:17262001-17262020 None:intergenic 25.0%
! GTAAAATAACTGCAAAATAC+TGG - chr3_3:17262335-17262354 Msa0444340:CDS 25.0%
!!! TTAGTGTCACTTTAAATTAG+CGG - chr3_3:17262534-17262553 Msa0444340:intron 25.0%
!!! TTTTTTAACTTGTGTAACCT+TGG - chr3_3:17262660-17262679 Msa0444340:intron 25.0%
! GAAAGTGAAAATGTAATTGA+AGG - chr3_3:17262846-17262865 Msa0444340:intron 25.0%
! TTTATCATATGTTCCTTCAA+CGG + chr3_3:17263170-17263189 None:intergenic 25.0%
! TGAAGGAACATATGATAAAA+TGG - chr3_3:17263171-17263190 Msa0444340:intron 25.0%
! TATATCTATGATAGTCACAA+GGG + chr3_3:17263532-17263551 None:intergenic 25.0%
!! GGATTTAGAATTTGAAATGA+TGG + chr3_3:17262001-17262020 None:intergenic 25.0%
! GTAAAATAACTGCAAAATAC+TGG - chr3_3:17262335-17262354 Msa0444340:CDS 25.0%
!!! TTAGTGTCACTTTAAATTAG+CGG - chr3_3:17262534-17262553 Msa0444340:intron 25.0%
!!! TTTTTTAACTTGTGTAACCT+TGG - chr3_3:17262660-17262679 Msa0444340:intron 25.0%
! GAAAGTGAAAATGTAATTGA+AGG - chr3_3:17262846-17262865 Msa0444340:intron 25.0%
! TTTATCATATGTTCCTTCAA+CGG + chr3_3:17263170-17263189 None:intergenic 25.0%
! TGAAGGAACATATGATAAAA+TGG - chr3_3:17263171-17263190 Msa0444340:intron 25.0%
! TATATCTATGATAGTCACAA+GGG + chr3_3:17263532-17263551 None:intergenic 25.0%
!! TAGAATTTGAAATGATGGGT+TGG + chr3_3:17261996-17262015 None:intergenic 30.0%
AGAAACTTGTGAAGTGATTA+AGG + chr3_3:17262022-17262041 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG - chr3_3:17262156-17262175 Msa0444340:exon 30.0%
! AAACAGTTTTGCTTTGATTC+TGG - chr3_3:17262608-17262627 Msa0444340:intron 30.0%
AGATAGTCATTGTATTTGCT+AGG - chr3_3:17262634-17262653 Msa0444340:intron 30.0%
TATATGTTCTTAGAGTGACT+CGG - chr3_3:17262699-17262718 Msa0444340:intron 30.0%
TTTGCAGTACTTCAACTATA+TGG - chr3_3:17263135-17263154 Msa0444340:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG - chr3_3:17263136-17263155 Msa0444340:intron 30.0%
AGGAACATATGATAAAATGG+AGG - chr3_3:17263174-17263193 Msa0444340:intron 30.0%
! TTCAAGAGTTCCTCAATTTT+GGG + chr3_3:17263268-17263287 None:intergenic 30.0%
! TTTCAAGAGTTCCTCAATTT+TGG + chr3_3:17263269-17263288 None:intergenic 30.0%
! ATTTCATATGATTTGGCCTT+TGG - chr3_3:17263468-17263487 Msa0444340:CDS 30.0%
CATGCTAATAATGAATCCAA+AGG + chr3_3:17263487-17263506 None:intergenic 30.0%
GTATATCTATGATAGTCACA+AGG + chr3_3:17263533-17263552 None:intergenic 30.0%
!! TAGAATTTGAAATGATGGGT+TGG + chr3_3:17261996-17262015 None:intergenic 30.0%
AGAAACTTGTGAAGTGATTA+AGG + chr3_3:17262022-17262041 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG - chr3_3:17262156-17262175 Msa0444340:exon 30.0%
! AAACAGTTTTGCTTTGATTC+TGG - chr3_3:17262608-17262627 Msa0444340:intron 30.0%
AGATAGTCATTGTATTTGCT+AGG - chr3_3:17262634-17262653 Msa0444340:intron 30.0%
TATATGTTCTTAGAGTGACT+CGG - chr3_3:17262699-17262718 Msa0444340:intron 30.0%
TTTGCAGTACTTCAACTATA+TGG - chr3_3:17263135-17263154 Msa0444340:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG - chr3_3:17263136-17263155 Msa0444340:intron 30.0%
AGGAACATATGATAAAATGG+AGG - chr3_3:17263174-17263193 Msa0444340:intron 30.0%
! TTCAAGAGTTCCTCAATTTT+GGG + chr3_3:17263268-17263287 None:intergenic 30.0%
! TTTCAAGAGTTCCTCAATTT+TGG + chr3_3:17263269-17263288 None:intergenic 30.0%
! ATTTCATATGATTTGGCCTT+TGG - chr3_3:17263468-17263487 Msa0444340:CDS 30.0%
CATGCTAATAATGAATCCAA+AGG + chr3_3:17263487-17263506 None:intergenic 30.0%
GTATATCTATGATAGTCACA+AGG + chr3_3:17263533-17263552 None:intergenic 30.0%
TTGTCTTCTTCTCGATTTCT+TGG - chr3_3:17262051-17262070 Msa0444340:three_prime_UTR 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG - chr3_3:17262072-17262091 Msa0444340:three_prime_UTR 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG - chr3_3:17262076-17262095 Msa0444340:three_prime_UTR 35.0%
TCAAGCTTCACCTCTAAATT+TGG - chr3_3:17262105-17262124 Msa0444340:three_prime_UTR 35.0%
ATTAGAGGGTCCAAATTTAG+AGG + chr3_3:17262118-17262137 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG - chr3_3:17262117-17262136 Msa0444340:three_prime_UTR 35.0%
GTGAATCTTGATCCATTAGA+GGG + chr3_3:17262132-17262151 None:intergenic 35.0%
TGTGAATCTTGATCCATTAG+AGG + chr3_3:17262133-17262152 None:intergenic 35.0%
ATGGATCAAGATTCACATGT+TGG - chr3_3:17262136-17262155 Msa0444340:three_prime_UTR 35.0%
!! TTCACATGTTGGTTCAAGTT+TGG - chr3_3:17262147-17262166 Msa0444340:exon 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG - chr3_3:17262171-17262190 Msa0444340:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG + chr3_3:17262215-17262234 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG - chr3_3:17262230-17262249 Msa0444340:CDS 35.0%
AAAAAAAGGGACATGCAACA+AGG + chr3_3:17262366-17262385 None:intergenic 35.0%
GATTCAAACTTCGTCTCTTA+AGG + chr3_3:17262501-17262520 None:intergenic 35.0%
AGACGAAGTTTGAATCTACT+TGG - chr3_3:17262505-17262524 Msa0444340:intron 35.0%
AGTTTGAATCTACTTGGAGA+CGG - chr3_3:17262511-17262530 Msa0444340:intron 35.0%
!! TTTAACTTGTGTAACCTTGG+AGG - chr3_3:17262663-17262682 Msa0444340:intron 35.0%
AACATAAACACAATCCTCCA+AGG + chr3_3:17262680-17262699 None:intergenic 35.0%
ATATGTTCTTAGAGTGACTC+GGG - chr3_3:17262700-17262719 Msa0444340:intron 35.0%
TGCAGTACTTCAACTATATG+GGG - chr3_3:17263137-17263156 Msa0444340:intron 35.0%
TAACAACAGTAGAATGTCCA+CGG + chr3_3:17263224-17263243 None:intergenic 35.0%
AATTGAGGAACTCTTGAAAG+CGG - chr3_3:17263270-17263289 Msa0444340:intron 35.0%
TATGATGTAAAAGACGCAGA+TGG - chr3_3:17263301-17263320 Msa0444340:intron 35.0%
GTAGCTGAAATGGCATATAA+TGG + chr3_3:17263411-17263430 None:intergenic 35.0%
AAACAGCTATGTAGCTGAAA+TGG + chr3_3:17263421-17263440 None:intergenic 35.0%
TTGTCTTCTTCTCGATTTCT+TGG - chr3_3:17262051-17262070 Msa0444340:three_prime_UTR 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG - chr3_3:17262072-17262091 Msa0444340:three_prime_UTR 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG - chr3_3:17262076-17262095 Msa0444340:three_prime_UTR 35.0%
TCAAGCTTCACCTCTAAATT+TGG - chr3_3:17262105-17262124 Msa0444340:three_prime_UTR 35.0%
ATTAGAGGGTCCAAATTTAG+AGG + chr3_3:17262118-17262137 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG - chr3_3:17262117-17262136 Msa0444340:three_prime_UTR 35.0%
GTGAATCTTGATCCATTAGA+GGG + chr3_3:17262132-17262151 None:intergenic 35.0%
TGTGAATCTTGATCCATTAG+AGG + chr3_3:17262133-17262152 None:intergenic 35.0%
ATGGATCAAGATTCACATGT+TGG - chr3_3:17262136-17262155 Msa0444340:three_prime_UTR 35.0%
!! TTCACATGTTGGTTCAAGTT+TGG - chr3_3:17262147-17262166 Msa0444340:exon 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG - chr3_3:17262171-17262190 Msa0444340:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG + chr3_3:17262215-17262234 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG - chr3_3:17262230-17262249 Msa0444340:CDS 35.0%
AAAAAAAGGGACATGCAACA+AGG + chr3_3:17262366-17262385 None:intergenic 35.0%
GATTCAAACTTCGTCTCTTA+AGG + chr3_3:17262501-17262520 None:intergenic 35.0%
AGACGAAGTTTGAATCTACT+TGG - chr3_3:17262505-17262524 Msa0444340:intron 35.0%
AGTTTGAATCTACTTGGAGA+CGG - chr3_3:17262511-17262530 Msa0444340:intron 35.0%
!! TTTAACTTGTGTAACCTTGG+AGG - chr3_3:17262663-17262682 Msa0444340:intron 35.0%
AACATAAACACAATCCTCCA+AGG + chr3_3:17262680-17262699 None:intergenic 35.0%
ATATGTTCTTAGAGTGACTC+GGG - chr3_3:17262700-17262719 Msa0444340:intron 35.0%
TGCAGTACTTCAACTATATG+GGG - chr3_3:17263137-17263156 Msa0444340:intron 35.0%
TAACAACAGTAGAATGTCCA+CGG + chr3_3:17263224-17263243 None:intergenic 35.0%
AATTGAGGAACTCTTGAAAG+CGG - chr3_3:17263270-17263289 Msa0444340:intron 35.0%
TATGATGTAAAAGACGCAGA+TGG - chr3_3:17263301-17263320 Msa0444340:intron 35.0%
GTAGCTGAAATGGCATATAA+TGG + chr3_3:17263411-17263430 None:intergenic 35.0%
AAACAGCTATGTAGCTGAAA+TGG + chr3_3:17263421-17263440 None:intergenic 35.0%
TCGAGAAGAAGACAAGTTTG+TGG + chr3_3:17262046-17262065 None:intergenic 40.0%
CTATGAGCAAATCAGTTCAG+TGG - chr3_3:17262456-17262475 Msa0444340:intron 40.0%
ACTCAGTGATGATTACGAGT+CGG + chr3_3:17262992-17263011 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+GGG + chr3_3:17263223-17263242 None:intergenic 40.0%
! AATTTTGGGCAAGTCACCTT+CGG + chr3_3:17263254-17263273 None:intergenic 40.0%
ATTGAGGAACTCTTGAAAGC+GGG - chr3_3:17263271-17263290 Msa0444340:intron 40.0%
ATGTAAAAGACGCAGATGGA+CGG - chr3_3:17263305-17263324 Msa0444340:intron 40.0%
!! TATGCAGCACTGACACTTAA+AGG - chr3_3:17263568-17263587 Msa0444340:CDS 40.0%
! GTGTTTGAAACTGACACATG+TGG - chr3_3:17263616-17263635 Msa0444340:five_prime_UTR 40.0%
TCGAGAAGAAGACAAGTTTG+TGG + chr3_3:17262046-17262065 None:intergenic 40.0%
CTATGAGCAAATCAGTTCAG+TGG - chr3_3:17262456-17262475 Msa0444340:intron 40.0%
ACTCAGTGATGATTACGAGT+CGG + chr3_3:17262992-17263011 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+GGG + chr3_3:17263223-17263242 None:intergenic 40.0%
! AATTTTGGGCAAGTCACCTT+CGG + chr3_3:17263254-17263273 None:intergenic 40.0%
ATTGAGGAACTCTTGAAAGC+GGG - chr3_3:17263271-17263290 Msa0444340:intron 40.0%
ATGTAAAAGACGCAGATGGA+CGG - chr3_3:17263305-17263324 Msa0444340:intron 40.0%
!! TATGCAGCACTGACACTTAA+AGG - chr3_3:17263568-17263587 Msa0444340:CDS 40.0%
! GTGTTTGAAACTGACACATG+TGG - chr3_3:17263616-17263635 Msa0444340:five_prime_UTR 40.0%
!! GCTGAAGGTGCTGGTATTTA+TGG - chr3_3:17262186-17262205 Msa0444340:CDS 45.0%
CTCAGTGATGATTACGAGTC+GGG + chr3_3:17262991-17263010 None:intergenic 45.0%
GGAAGAGAATGTGCATGTGA+TGG - chr3_3:17263085-17263104 Msa0444340:intron 45.0%
ACAACAGTAGAATGTCCACG+GGG + chr3_3:17263222-17263241 None:intergenic 45.0%
! AGGTGACTTGCCCAAAATTG+AGG - chr3_3:17263255-17263274 Msa0444340:intron 45.0%
!! GCTGAAGGTGCTGGTATTTA+TGG - chr3_3:17262186-17262205 Msa0444340:CDS 45.0%
CTCAGTGATGATTACGAGTC+GGG + chr3_3:17262991-17263010 None:intergenic 45.0%
GGAAGAGAATGTGCATGTGA+TGG - chr3_3:17263085-17263104 Msa0444340:intron 45.0%
ACAACAGTAGAATGTCCACG+GGG + chr3_3:17263222-17263241 None:intergenic 45.0%
! AGGTGACTTGCCCAAAATTG+AGG - chr3_3:17263255-17263274 Msa0444340:intron 45.0%
!!! TTTTTTTAATAAAAAAATTG+TGG + chr3_3:17262574-17262593 None:intergenic 5.0%
!!! TTTTTTTAATAAAAAAATTG+TGG + chr3_3:17262574-17262593 None:intergenic 5.0%
AAGCCAAAACATTCACCCCG+TGG - chr3_3:17263204-17263223 Msa0444340:intron 50.0%
! TGTCCACGGGGTGAATGTTT+TGG + chr3_3:17263210-17263229 None:intergenic 50.0%
CTGTTGTTAGCTGCATCCGA+AGG - chr3_3:17263235-17263254 Msa0444340:intron 50.0%
AAGCCAAAACATTCACCCCG+TGG - chr3_3:17263204-17263223 Msa0444340:intron 50.0%
! TGTCCACGGGGTGAATGTTT+TGG + chr3_3:17263210-17263229 None:intergenic 50.0%
CTGTTGTTAGCTGCATCCGA+AGG - chr3_3:17263235-17263254 Msa0444340:intron 50.0%
!! GGTGTTGATGCTGAAGGTGC+TGG - chr3_3:17262177-17262196 Msa0444340:CDS 55.0%
! ATGGACGGACAGCGTTGGAT+AGG - chr3_3:17263320-17263339 Msa0444340:CDS 55.0%
! TGGACGGACAGCGTTGGATA+GGG - chr3_3:17263321-17263340 Msa0444340:CDS 55.0%
!! GGTGTTGATGCTGAAGGTGC+TGG - chr3_3:17262177-17262196 Msa0444340:CDS 55.0%
! ATGGACGGACAGCGTTGGAT+AGG - chr3_3:17263320-17263339 Msa0444340:CDS 55.0%
! TGGACGGACAGCGTTGGATA+GGG - chr3_3:17263321-17263340 Msa0444340:CDS 55.0%
ATGGGGATGCTCGCCGTTGA+AGG - chr3_3:17263154-17263173 Msa0444340:intron 60.0%
ATGGGGATGCTCGCCGTTGA+AGG - chr3_3:17263154-17263173 Msa0444340:intron 60.0%
CGCAGATGGACGGACAGCGT+TGG - chr3_3:17263315-17263334 Msa0444340:CDS 65.0%
CGCAGATGGACGGACAGCGT+TGG - chr3_3:17263315-17263334 Msa0444340:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 17261905 17263656 17261905 ID=Msa0444340;Name=Msa0444340
chr3_3 mRNA 17261905 17263656 17261905 ID=Msa0444340-mRNA-1;Parent=Msa0444340;Name=Msa0444340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=62|1|1|1|1|1|2|260|179
chr3_3 exon 17261905 17262419 17261905 ID=Msa0444340-mRNA-1:exon:3639;Parent=Msa0444340-mRNA-1
chr3_3 exon 17263310 17263656 17263310 ID=Msa0444340-mRNA-1:exon:3638;Parent=Msa0444340-mRNA-1
chr3_3 five_prime_UTR 17263595 17263656 17263595 ID=Msa0444340-mRNA-1:five_prime_utr;Parent=Msa0444340-mRNA-1
chr3_3 CDS 17263310 17263594 17263310 ID=Msa0444340-mRNA-1:cds;Parent=Msa0444340-mRNA-1
chr3_3 CDS 17262165 17262419 17262165 ID=Msa0444340-mRNA-1:cds;Parent=Msa0444340-mRNA-1
chr3_3 three_prime_UTR 17261905 17262164 17261905 ID=Msa0444340-mRNA-1:three_prime_utr;Parent=Msa0444340-mRNA-1
Gene Sequence

>Msa0444340

ATGTCTTCAATCACATGCATAACTCACCAACCCATCATTTCAAATTCTAAATCCTTAATCACTTCACAAGTTTCTTCCACAAACTTGTCTTCTTCTCGATTTCTTGGTATTAGAGTTAAGAGTGTTGGATGGTCAAGCTCAAGCTTCACCTCTAAATTTGGACCCTCTAATGGATCAAGATTCACATGTTGGTTCAAGTTTGGTAAAAATGGTGTTGATGCTGAAGGTGCTGGTATTTATGGTAGCCAGTCTCGTGATGATTTTGATAGAGATGATGTTGAACAGTACTTCAACTATATGGGGATGCTCGCCGTTGAAGGAACATATGATAAAATGGAGGCTCTTCTAAGCCAAAACATTCACCCCGTGGACATTCTACTGTTGTTAGCTGCATCCGAAGGTGACTTGCCCAAAATTGAGGAACTCTTGAAAGCGGGAGCAAAATATGATGTAAAAGACGCAGATGGACGGACAGCGTTGGATAGGGCTAATGCTGAAGTTAAAGATTTCATTCTTAATTTTTCAGTGCAGAGAGCATGA

Protein sequence

>Msa0444340

MSSITCITHQPIISNSKSLITSQVSSTNLSSSRFLGIRVKSVGWSSSSFTSKFGPSNGSRFTCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQNIHPVDILLLLAASEGDLPKIEELLKAGAKYDVKDADGRTALDRANAEVKDFILNFSVQRA*