AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0705250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0705250 MtrunA17_Chr8g0383951 88.539 445 5 3 14 412 1 445 0.0 775
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 143 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTTCCCTTCAAGATTT+TGG 0.069730 4_4:+77815550 Msa0705250:CDS
GATTGGTACAAATTCAATTA+AGG 0.200850 4_4:+77817648 Msa0705250:three_prime_UTR
CGCCTTTCTGCGCCCGGGCT+TGG 0.209663 4_4:+77816599 Msa0705250:CDS
TGCTGAAGTTCTGGCATCTA+AGG 0.222981 4_4:+77816807 Msa0705250:CDS
CTTCCTGATTGCTGAAGTTC+TGG 0.223414 4_4:+77816798 Msa0705250:CDS
AAAAGGGACTCTGGTGGTTT+GGG 0.240265 4_4:+77815532 Msa0705250:CDS
GACACATTAGAGGAAGTAAT+TGG 0.241899 4_4:+77815508 Msa0705250:CDS
TGCAATGTGTCTCTTTCTTA+TGG 0.254624 4_4:+77817984 Msa0705250:three_prime_UTR
GAAAAGGGACTCTGGTGGTT+TGG 0.264666 4_4:+77815531 Msa0705250:CDS
GGGTGAGTTGATGTAGATTT+TGG 0.281925 4_4:+77817731 Msa0705250:three_prime_UTR
TTCTTTCACCTCAAATGGTT+GGG 0.316414 4_4:+77816678 Msa0705250:CDS
CTCACCCGCTGCACGAGATT+TGG 0.332656 4_4:-77817715 None:intergenic
GTCACTGTTAGTTCGGATTT+CGG 0.342424 4_4:-77817693 None:intergenic
TCGGCAGGGTGCAGATTTGA+TGG 0.344354 4_4:+77816484 Msa0705250:intron
ATTGGTACAAATTCAATTAA+GGG 0.353441 4_4:+77817649 Msa0705250:three_prime_UTR
CCATGTGGCGGATATGTTGC+TGG 0.367862 4_4:+77816545 Msa0705250:CDS
GCCGATGGAACCTTCATTGA+TGG 0.370185 4_4:+77817351 Msa0705250:CDS
GCGGACAATATTATTAAGAT+TGG 0.371580 4_4:+77817631 Msa0705250:three_prime_UTR
TATACCTTGTTTGTAAGTAT+AGG 0.375086 4_4:+77817959 Msa0705250:three_prime_UTR
GCAGCGCGCCTTTCTGCGCC+CGG 0.376005 4_4:+77816593 Msa0705250:CDS
ATTATTTCTTTCACCTCAAA+TGG 0.379919 4_4:+77816673 Msa0705250:CDS
CCGAGGATGGTGGACTTGAC+TGG 0.385164 4_4:+77815675 Msa0705250:CDS
ATACCTTGTTTGTAAGTATA+GGG 0.392165 4_4:+77817960 Msa0705250:three_prime_UTR
CCAATTGCGGGTACCACTCC+TGG 0.392343 4_4:+77817175 Msa0705250:CDS
ACTTCCTCTAATGTGTCATA+TGG 0.402174 4_4:-77815502 None:intergenic
ATTGCTTCCCCAACCATTTG+AGG 0.410807 4_4:-77816686 None:intergenic
ACCACAATCCACACCAAGCC+CGG 0.425545 4_4:-77816612 None:intergenic
TAGAGGAAGTAATTGGGAAA+AGG 0.426036 4_4:+77815515 Msa0705250:CDS
AAATGCAGGGTGGCACTCAT+TGG 0.430241 4_4:+77817515 Msa0705250:intron
TGGCACTCATTGGACTCAAT+GGG 0.438629 4_4:+77817525 Msa0705250:CDS
AGAGGTCATGTGGTTATTCA+TGG 0.439010 4_4:+77815747 Msa0705250:CDS
AGTGGTACCCGCAATTGGTT+TGG 0.441177 4_4:-77817170 None:intergenic
ATCAGCTATTGTTCGTTCAC+AGG 0.442751 4_4:+77814788 Msa0705250:CDS
GTGGCACTCATTGGACTCAA+TGG 0.444697 4_4:+77817524 Msa0705250:CDS
AACCTGAACTGTATCACATC+GGG 0.445399 4_4:-77816860 None:intergenic
ATGCCAGAACTTCAGCAATC+AGG 0.447778 4_4:-77816801 None:intergenic
AGATTTGGTCACTGTTAGTT+CGG 0.448723 4_4:-77817700 None:intergenic
GGTGAAATACCGAGAAGTTC+CGG 0.451794 4_4:+77815573 Msa0705250:CDS
CCAGGAGTGGTACCCGCAAT+TGG 0.455539 4_4:-77817175 None:intergenic
CAGCGCGCCTTTCTGCGCCC+GGG 0.457346 4_4:+77816594 Msa0705250:CDS
AGAGGAAGTAATTGGGAAAA+GGG 0.458354 4_4:+77815516 Msa0705250:CDS
GCCTGGCAAAATACAGCAAA+TGG 0.460230 4_4:-77817414 None:intergenic
TTTCTTTCACCTCAAATGGT+TGG 0.466714 4_4:+77816677 Msa0705250:CDS
TCATACACCAAACCAATTGC+GGG 0.468084 4_4:+77817163 Msa0705250:CDS
TTCTGCGCCCGGGCTTGGTG+TGG 0.471332 4_4:+77816604 Msa0705250:CDS
CAGACCTCTGATGCATATCC+AGG 0.477506 4_4:-77817193 None:intergenic
TCTGGAACGAAGGGATTGAT+AGG 0.478948 4_4:-77813763 None:intergenic
TGCCTGTAGGCTGTACAACT+TGG 0.486368 4_4:+77817082 Msa0705250:intron
CACCAAGCCCGGGCGCAGAA+AGG 0.488183 4_4:-77816601 None:intergenic
AGTTTGAGTGTTAATGACAT+AGG 0.488359 4_4:+77815776 Msa0705250:CDS
TAGCGAATGGTAGATGTTGT+TGG 0.491205 4_4:-77813721 None:intergenic
TGCTCCATATGACACATTAG+AGG 0.492829 4_4:+77815498 Msa0705250:CDS
GATGCAAAATCCTGAGTGTT+CGG 0.498240 4_4:+77816335 Msa0705250:intron
ATTTCACCCCAAAATCTTGA+AGG 0.501972 4_4:-77815558 None:intergenic
CAGGGTGCAGATTTGATGGC+GGG 0.503740 4_4:+77816488 Msa0705250:intron
ATGTGTTAATTTAGAATCCA+TGG 0.507142 4_4:+77817903 Msa0705250:three_prime_UTR
TTTCATCAGCTTGCCGAGGA+TGG 0.507265 4_4:+77815662 Msa0705250:intron
AAAAGAACAAAAGCAAGATA+AGG 0.507721 4_4:+77813627 Msa0705250:CDS
AATGGTTGGGGAAGCAATCA+AGG 0.508889 4_4:+77816691 Msa0705250:CDS
TGTTCAGAGAAGCTCTCCTG+TGG 0.510171 4_4:+77817138 Msa0705250:CDS
CATCAGCTTGCCGAGGATGG+TGG 0.516636 4_4:+77815665 Msa0705250:intron
GTCATGGTGGATAATTGCTA+TGG 0.519956 4_4:+77816357 Msa0705250:CDS
TAGATTTCAGAACTTCTCCT+AGG 0.521668 4_4:-77817555 None:intergenic
GTTTGAGTGTTAATGACATA+GGG 0.522137 4_4:+77815777 Msa0705250:CDS
GTTCAGAGAAGCTCTCCTGT+GGG 0.522769 4_4:+77817139 Msa0705250:CDS
AGCGAGTACCTCTGGAACGA+AGG 0.525027 4_4:-77813773 None:intergenic
TTCTGAATGCAATGCATCAA+CGG 0.525308 4_4:-77813878 None:intergenic
GTTAACTTGTGCTGAAAGAA+TGG 0.526680 4_4:+77818006 Msa0705250:three_prime_UTR
ACACATTAGAGGAAGTAATT+GGG 0.527457 4_4:+77815509 Msa0705250:CDS
CCAGTCAAGTCCACCATCCT+CGG 0.529194 4_4:-77815675 None:intergenic
TCTCAGGTTATCTTTGCCGA+TGG 0.530646 4_4:+77817336 Msa0705250:intron
TCTTTCACCTCAAATGGTTG+GGG 0.531494 4_4:+77816679 Msa0705250:CDS
AAAGGCTCTCATGATATCAC+CGG 0.531537 4_4:-77816642 None:intergenic
CCCGGGCTTGGTGTGGATTG+TGG 0.531980 4_4:+77816611 Msa0705250:CDS
ACTCAATGGGGACTAGTCCT+AGG 0.534013 4_4:+77817538 Msa0705250:CDS
GTGACCAAATCTCGTGCAGC+GGG 0.534283 4_4:+77817711 Msa0705250:three_prime_UTR
GTGGATTGTGGTTCAACTCC+CGG 0.534401 4_4:+77816623 Msa0705250:CDS
TCATGGTGGATAATTGCTAT+GGG 0.535135 4_4:+77816358 Msa0705250:CDS
AAGTTCTGAAATCTATATGA+TGG 0.540257 4_4:+77817563 Msa0705250:CDS
CAAAATGTGCACTCATACAG+AGG 0.542723 4_4:+77815729 Msa0705250:CDS
AGTAGCATACCGGAACTTCT+CGG 0.544340 4_4:-77815582 None:intergenic
GAGATTCGAACGGGATGCGT+AGG 0.544625 4_4:-77813694 None:intergenic
GTCATACACCAAACCAATTG+CGG 0.548656 4_4:+77817162 Msa0705250:CDS
CCACAATCCACACCAAGCCC+GGG 0.549428 4_4:-77816611 None:intergenic
GCTGAAGTTCTGGCATCTAA+GGG 0.550000 4_4:+77816808 Msa0705250:CDS
ACTAGTACTTCCATCAATGA+AGG 0.556777 4_4:-77817361 None:intergenic
ACTAGTGAGCTTTCATGTGA+TGG 0.559350 4_4:+77817378 Msa0705250:CDS
TTAATAATATTGTCCGCTGA+AGG 0.559995 4_4:-77817625 None:intergenic
AGAACAAAAGCAAGATAAGG+AGG 0.560797 4_4:+77813630 Msa0705250:CDS
GTAATTGGGAAAAGGGACTC+TGG 0.564622 4_4:+77815523 Msa0705250:CDS
GGCAGTTTGATAAAGAATCC+TGG 0.564656 4_4:+77816509 Msa0705250:CDS
ACAGCAAATGGCTCTCTAAG+AGG 0.576106 4_4:-77817402 None:intergenic
ATATTATCGCATACCACCAT+GGG 0.576389 4_4:-77816405 None:intergenic
GTTGGAATGGAGATTCGAAC+GGG 0.578637 4_4:-77813703 None:intergenic
CATATTATCGCATACCACCA+TGG 0.578930 4_4:-77816406 None:intergenic
TTTCACCCCAAAATCTTGAA+GGG 0.581207 4_4:-77815557 None:intergenic
GTATACACCACATACTATCA+AGG 0.584193 4_4:-77817941 None:intergenic
AATGGTAGATGTTGTTGGAA+TGG 0.587350 4_4:-77813716 None:intergenic
GCATTCAGAATTCAGAGCAG+TGG 0.587918 4_4:+77813891 Msa0705250:CDS
CATGGAGCAATCGTTCCACC+AGG 0.592431 4_4:-77816527 None:intergenic
ACATATTATACGACCTTCAG+CGG 0.593384 4_4:+77817612 Msa0705250:three_prime_UTR
GAACAAAAGCAAGATAAGGA+GGG 0.594310 4_4:+77813631 Msa0705250:CDS
CACTCCTGGATATGCATCAG+AGG 0.597649 4_4:+77817189 Msa0705250:CDS
CCAGCAACATATCCGCCACA+TGG 0.599034 4_4:-77816545 None:intergenic
GTGAAAAGCTTTAAGAACAC+GGG 0.600306 4_4:-77813938 None:intergenic
CATCCCTATACTTACAAACA+AGG 0.600332 4_4:-77817963 None:intergenic
TGTTGGAATGGAGATTCGAA+CGG 0.600412 4_4:-77813704 None:intergenic
TCCATCAATGAAGGTTCCAT+CGG 0.600675 4_4:-77817352 None:intergenic
TATCAATCCCTTCGTTCCAG+AGG 0.600711 4_4:+77813765 Msa0705250:CDS
GCAGGGTGCAGATTTGATGG+CGG 0.604272 4_4:+77816487 Msa0705250:intron
AAATCCTGAGTGTTCGGTCA+TGG 0.605022 4_4:+77816341 Msa0705250:CDS
CATGTGGCGGATATGTTGCT+GGG 0.607387 4_4:+77816546 Msa0705250:CDS
GAAGCGAGAGGCATAGCGAA+TGG 0.611375 4_4:-77813734 None:intergenic
TAATTGCTATGGGGAACTTG+TGG 0.611820 4_4:+77816368 Msa0705250:CDS
GGTACAAATTCAATTAAGGG+TGG 0.613885 4_4:+77817652 Msa0705250:three_prime_UTR
TCCTGAGTGTTCGGTCATGG+TGG 0.614793 4_4:+77816344 Msa0705250:CDS
ATGCGTAGGATAAGCAGAGA+AGG 0.621133 4_4:-77813680 None:intergenic
TGCTATGGGGAACTTGTGGA+AGG 0.622880 4_4:+77816372 Msa0705250:CDS
GGTCAAAACAGTTCTTACCA+TGG 0.627762 4_4:-77817920 None:intergenic
TTCAGAGAAGCTCTCCTGTG+GGG 0.632335 4_4:+77817140 Msa0705250:CDS
TGTGAAAAGCTTTAAGAACA+CGG 0.632469 4_4:-77813939 None:intergenic
GGTTTGGTGTATGACCCCAC+AGG 0.633665 4_4:-77817154 None:intergenic
AAACCTGAACTGTATCACAT+CGG 0.634425 4_4:-77816861 None:intergenic
CTCTGATGCATATCCAGGAG+TGG 0.634582 4_4:-77817188 None:intergenic
GGAAGGCATTGAACCTCCCA+TGG 0.640149 4_4:+77816389 Msa0705250:CDS
AAGGCTCTCATGATATCACC+GGG 0.640580 4_4:-77816641 None:intergenic
GCGAGTACCTCTGGAACGAA+GGG 0.641161 4_4:-77813772 None:intergenic
TCCACCATGACCGAACACTC+AGG 0.644287 4_4:-77816345 None:intergenic
CAGAACTTCAGCAATCAGGA+AGG 0.652209 4_4:-77816797 None:intergenic
GCACTCATACAGAGGTCATG+TGG 0.658940 4_4:+77815737 Msa0705250:CDS
AGTGACCAAATCTCGTGCAG+CGG 0.661355 4_4:+77817710 Msa0705250:three_prime_UTR
TTATCGCATACCACCATGGG+AGG 0.664402 4_4:-77816402 None:intergenic
GGAACGATTGCTCCATGTGG+CGG 0.666888 4_4:+77816533 Msa0705250:CDS
GGCACTCATTGGACTCAATG+GGG 0.670357 4_4:+77817526 Msa0705250:CDS
ATTGGGAAAAGGGACTCTGG+TGG 0.681378 4_4:+77815526 Msa0705250:CDS
AAAAGCTTTAAGAACACGGG+TGG 0.682092 4_4:-77813935 None:intergenic
GATAGGAACAGAGAAGCGAG+AGG 0.690097 4_4:-77813746 None:intergenic
GGTGGAACGATTGCTCCATG+TGG 0.694007 4_4:+77816530 Msa0705250:CDS
CCTGAACTGTATCACATCGG+GGG 0.701546 4_4:-77816858 None:intergenic
ACCTGAACTGTATCACATCG+GGG 0.703191 4_4:-77816859 None:intergenic
CATGGTGGATAATTGCTATG+GGG 0.706640 4_4:+77816359 Msa0705250:CDS
AGGCATTGAACCTCCCATGG+TGG 0.710958 4_4:+77816392 Msa0705250:CDS
AGTTTGATAAAGAATCCTGG+TGG 0.766897 4_4:+77816512 Msa0705250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTCATTTACAAAA+CGG - chr4_4:77814015-77814034 None:intergenic 10.0%
!!! TGTAAATGAATAATTATTTT+AGG + chr4_4:77814018-77814037 Msa0705250:intron 10.0%
!!! TATTTTAGGTATTTATTTTT+TGG + chr4_4:77814032-77814051 Msa0705250:intron 10.0%
!!! ATTTTAGGTATTTATTTTTT+GGG + chr4_4:77814033-77814052 Msa0705250:intron 10.0%
!! ATATTAAGTTACTTATTAAT+AGG + chr4_4:77814835-77814854 Msa0705250:intron 10.0%
!! TATTAAGTTACTTATTAATA+GGG + chr4_4:77814836-77814855 Msa0705250:intron 10.0%
!!! TTTAAAGTTAATATTATTCA+AGG + chr4_4:77815868-77815887 Msa0705250:intron 10.0%
!!! TTTTAATTTTGATTTTAAGT+TGG + chr4_4:77816934-77816953 Msa0705250:intron 10.0%
!! AACTTAATATAAAGAAAACA+GGG - chr4_4:77814825-77814844 None:intergenic 15.0%
!! TAACTTAATATAAAGAAAAC+AGG - chr4_4:77814826-77814845 None:intergenic 15.0%
!! ATTAAGTTACTTATTAATAG+GGG + chr4_4:77814837-77814856 Msa0705250:intron 15.0%
!! TAGAATATTAGAAGAAAAAA+GGG - chr4_4:77815360-77815379 None:intergenic 15.0%
!! ATAGAATATTAGAAGAAAAA+AGG - chr4_4:77815361-77815380 None:intergenic 15.0%
!! TTCTAATAAAATGATAAATC+TGG - chr4_4:77816719-77816738 None:intergenic 15.0%
!!! ATACATTTTTTGCTTATATT+TGG + chr4_4:77816742-77816761 Msa0705250:intron 15.0%
!!! AAACATAATCAATTTGTTTA+GGG - chr4_4:77817239-77817258 None:intergenic 15.0%
!!! AAAACATAATCAATTTGTTT+AGG - chr4_4:77817240-77817259 None:intergenic 15.0%
!!! TAAACAAATTGATTATGTTT+TGG + chr4_4:77817239-77817258 Msa0705250:intron 15.0%
!!! AAAATATTGAGTTTTGTAAA+TGG + chr4_4:77817855-77817874 Msa0705250:three_prime_UTR 15.0%
!! AATAAGCTAAAAATAGCTTA+TGG + chr4_4:77814193-77814212 Msa0705250:intron 20.0%
!! ATTAACAAAACAACCAATTA+GGG - chr4_4:77814556-77814575 None:intergenic 20.0%
!! ATTAACAAAACAACCAATTA+GGG - chr4_4:77814556-77814575 None:intergenic 20.0%
!! AATACTAACAATGTTAACAT+TGG + chr4_4:77814947-77814966 Msa0705250:intron 20.0%
!! CATTGGCAATTTAAATAAAA+AGG + chr4_4:77814964-77814983 Msa0705250:intron 20.0%
!! TATAACTTGAAGCTATAATT+TGG - chr4_4:77815123-77815142 None:intergenic 20.0%
!! TAACTTATAATCAATTCTGA+AGG + chr4_4:77815141-77815160 Msa0705250:intron 20.0%
!!! TAATATTTTTAGGTCACAAA+AGG - chr4_4:77816152-77816171 None:intergenic 20.0%
!!! TTCTGTTCTCTAATATTTTT+AGG - chr4_4:77816162-77816181 None:intergenic 20.0%
!! TTTGTGATCAGAAAAATTAT+AGG - chr4_4:77816279-77816298 None:intergenic 20.0%
!!! ATTTTCTGTATTCTTTACAA+GGG + chr4_4:77816772-77816791 Msa0705250:intron 20.0%
!! CAAAATTAAAAATCAGATAC+AGG - chr4_4:77816925-77816944 None:intergenic 20.0%
!! GTAATATTGAACATCATTTA+AGG - chr4_4:77817266-77817285 None:intergenic 20.0%
!! ATCAAAGAGTTATTAATATC+TGG - chr4_4:77817308-77817327 None:intergenic 20.0%
!! ATTGGTACAAATTCAATTAA+GGG + chr4_4:77817649-77817668 Msa0705250:three_prime_UTR 20.0%
! AAAAGAACAAAAGCAAGATA+AGG + chr4_4:77813627-77813646 Msa0705250:CDS 25.0%
! TTATCTATTAGCATAAGCAT+TGG - chr4_4:77814262-77814281 None:intergenic 25.0%
! AAACATTGGATATATAAGAG+AGG + chr4_4:77814372-77814391 Msa0705250:intron 25.0%
! AACATTGGATATATAAGAGA+GGG + chr4_4:77814373-77814392 Msa0705250:intron 25.0%
! CATTAACAAAACAACCAATT+AGG - chr4_4:77814557-77814576 None:intergenic 25.0%
! CATTAACAAAACAACCAATT+AGG - chr4_4:77814557-77814576 None:intergenic 25.0%
! CATTGTTAGTATTATATGCT+GGG - chr4_4:77814940-77814959 None:intergenic 25.0%
! ACATTGTTAGTATTATATGC+TGG - chr4_4:77814941-77814960 None:intergenic 25.0%
! TTGAATATGTAACTGGAATA+AGG + chr4_4:77815434-77815453 Msa0705250:intron 25.0%
! AAGAAATATTAGTAGCATAC+CGG - chr4_4:77815595-77815614 None:intergenic 25.0%
!! TATTATGGACTTTTAGATCA+GGG - chr4_4:77815961-77815980 None:intergenic 25.0%
! TATAGCTTCTACTAGTATTA+TGG - chr4_4:77815976-77815995 None:intergenic 25.0%
!! TAGAAGCTATATTGATTGTT+AGG + chr4_4:77815985-77816004 Msa0705250:intron 25.0%
!! AGAAGCTATATTGATTGTTA+GGG + chr4_4:77815986-77816005 Msa0705250:intron 25.0%
!!! TTTTTTACCAACAGAATTAC+TGG + chr4_4:77816098-77816117 Msa0705250:intron 25.0%
! TATTAGAGAACAGAAAATAG+TGG + chr4_4:77816167-77816186 Msa0705250:intron 25.0%
! AAGAAATAATCCCTGAAAAA+AGG - chr4_4:77816663-77816682 None:intergenic 25.0%
!! ATTATTTCTTTCACCTCAAA+TGG + chr4_4:77816673-77816692 Msa0705250:CDS 25.0%
!! GATTTTCTGTATTCTTTACA+AGG + chr4_4:77816771-77816790 Msa0705250:intron 25.0%
! AAGAGTTATTAATATCTGGT+AGG - chr4_4:77817304-77817323 None:intergenic 25.0%
! AGCAATAGTATACTATATAC+AGG + chr4_4:77817454-77817473 Msa0705250:intron 25.0%
!!! AAGTTCTGAAATCTATATGA+TGG + chr4_4:77817563-77817582 Msa0705250:CDS 25.0%
! GATTGGTACAAATTCAATTA+AGG + chr4_4:77817648-77817667 Msa0705250:three_prime_UTR 25.0%
!! TGATGTAGATTTTGGATTTT+TGG + chr4_4:77817739-77817758 Msa0705250:three_prime_UTR 25.0%
!! GATGTAGATTTTGGATTTTT+GGG + chr4_4:77817740-77817759 Msa0705250:three_prime_UTR 25.0%
!! ATGTGTTAATTTAGAATCCA+TGG + chr4_4:77817903-77817922 Msa0705250:three_prime_UTR 25.0%
!! TATACCTTGTTTGTAAGTAT+AGG + chr4_4:77817959-77817978 Msa0705250:three_prime_UTR 25.0%
!! ATACCTTGTTTGTAAGTATA+GGG + chr4_4:77817960-77817979 Msa0705250:three_prime_UTR 25.0%
GCAACAAAATTAAGTCTGAA+TGG - chr4_4:77813841-77813860 None:intergenic 30.0%
! ACTTAATTTTGTTGCAATGC+AGG + chr4_4:77813846-77813865 Msa0705250:intron 30.0%
!! TGTGAAAAGCTTTAAGAACA+CGG - chr4_4:77813942-77813961 None:intergenic 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG + chr4_4:77814158-77814177 Msa0705250:intron 30.0%
!! TGTTGTTTCTATAAGCTCTT+CGG + chr4_4:77814226-77814245 Msa0705250:intron 30.0%
TCAAATAAGACAATCCAAAC+AGG + chr4_4:77814284-77814303 Msa0705250:intron 30.0%
ACATTGGATATATAAGAGAG+GGG + chr4_4:77814374-77814393 Msa0705250:intron 30.0%
! ATAAAGACCAATGTGTTGTT+GGG - chr4_4:77814496-77814515 None:intergenic 30.0%
! TAAAGACCAATGTGTTGTTA+GGG - chr4_4:77814610-77814629 None:intergenic 30.0%
! ATAAAGACCAATGTGTTGTT+AGG - chr4_4:77814496-77814515 None:intergenic 30.0%
ACTTATTAATAGGGGATATG+AGG + chr4_4:77814845-77814864 Msa0705250:intron 30.0%
AATTTAGGAGTGAAGTGATA+AGG + chr4_4:77814892-77814911 Msa0705250:intron 30.0%
ATTTAGGAGTGAAGTGATAA+GGG + chr4_4:77814893-77814912 Msa0705250:intron 30.0%
! ATTATGTTTTCTCCCAAAAG+TGG + chr4_4:77815226-77815245 Msa0705250:intron 30.0%
ATAGTATGCAAGTGTATGTT+TGG - chr4_4:77815254-77815273 None:intergenic 30.0%
TTCCAGTTACATATTCAACA+GGG - chr4_4:77815432-77815451 None:intergenic 30.0%
ATTCCAGTTACATATTCAAC+AGG - chr4_4:77815433-77815452 None:intergenic 30.0%
! CTAATATAGCTATCAGCTTT+TGG + chr4_4:77815465-77815484 Msa0705250:intron 30.0%
ACACATTAGAGGAAGTAATT+GGG + chr4_4:77815509-77815528 Msa0705250:CDS 30.0%
!! TATGAGTGCACATTTTGTTT+CGG - chr4_4:77815726-77815745 None:intergenic 30.0%
AGTTTGAGTGTTAATGACAT+AGG + chr4_4:77815776-77815795 Msa0705250:CDS 30.0%
GTTTGAGTGTTAATGACATA+GGG + chr4_4:77815777-77815796 Msa0705250:CDS 30.0%
! AGATTCTTAGTTGTGCTTTT+TGG + chr4_4:77815824-77815843 Msa0705250:intron 30.0%
!!! ATTCGTATTTTAACTCACAC+AGG - chr4_4:77815906-77815925 None:intergenic 30.0%
! GTATTATGGACTTTTAGATC+AGG - chr4_4:77815962-77815981 None:intergenic 30.0%
TAGTATTCCAGTAATTCTGT+TGG - chr4_4:77816108-77816127 None:intergenic 30.0%
!!! CTTTTAAAGTATGAGCGTTA+GGG + chr4_4:77816204-77816223 Msa0705250:intron 30.0%
! TTTTGCATCTGAACATTGAA+GGG - chr4_4:77816324-77816343 None:intergenic 30.0%
! ATTTTGCATCTGAACATTGA+AGG - chr4_4:77816325-77816344 None:intergenic 30.0%
GAATAAAGCAATACATACTG+CGG - chr4_4:77816432-77816451 None:intergenic 30.0%
! GTATGTATTGCTTTATTCCA+AGG + chr4_4:77816434-77816453 Msa0705250:intron 30.0%
TATCACATTTCTACATTGGT+CGG + chr4_4:77816465-77816484 Msa0705250:intron 30.0%
ATTAATATCTGGTAGGACTT+TGG - chr4_4:77817297-77817316 None:intergenic 30.0%
!! TTCATTTGTTTTCCAAATGC+AGG + chr4_4:77817501-77817520 Msa0705250:intron 30.0%
!! TCATTTGTTTTCCAAATGCA+GGG + chr4_4:77817502-77817521 Msa0705250:intron 30.0%
TTAATAATATTGTCCGCTGA+AGG - chr4_4:77817628-77817647 None:intergenic 30.0%
GCGGACAATATTATTAAGAT+TGG + chr4_4:77817631-77817650 Msa0705250:three_prime_UTR 30.0%
!! TTGAGTTTTGTAAATGGCTT+AGG + chr4_4:77817861-77817880 Msa0705250:three_prime_UTR 30.0%
AGAACAAAAGCAAGATAAGG+AGG + chr4_4:77813630-77813649 Msa0705250:CDS 35.0%
GAACAAAAGCAAGATAAGGA+GGG + chr4_4:77813631-77813650 Msa0705250:CDS 35.0%
AATGGTAGATGTTGTTGGAA+TGG - chr4_4:77813719-77813738 None:intergenic 35.0%
TTCTGAATGCAATGCATCAA+CGG - chr4_4:77813881-77813900 None:intergenic 35.0%
!! GTGAAAAGCTTTAAGAACAC+GGG - chr4_4:77813941-77813960 None:intergenic 35.0%
! CCTTAAGGCATTAGGTATAT+GGG - chr4_4:77814401-77814420 None:intergenic 35.0%
! ACCTTAAGGCATTAGGTATA+TGG - chr4_4:77814402-77814421 None:intergenic 35.0%
! ACTCAAAACCTTAAGGCATT+AGG - chr4_4:77814409-77814428 None:intergenic 35.0%
!!! TAATGCCTTAAGGTTTTGAG+TGG + chr4_4:77814408-77814427 Msa0705250:intron 35.0%
! TAAAGACCAATGTGTTGTTG+GGG - chr4_4:77814495-77814514 None:intergenic 35.0%
CATAAAGACCAATGTGTTGT+TGG - chr4_4:77814497-77814516 None:intergenic 35.0%
CAATCTAAACATGCCCTAAT+TGG + chr4_4:77814540-77814559 Msa0705250:intron 35.0%
CAATCTAAACATGCCCTAAT+TGG + chr4_4:77814540-77814559 Msa0705250:intron 35.0%
ATTAATAGGGGATATGAGGT+TGG + chr4_4:77814849-77814868 Msa0705250:intron 35.0%
TTTAGGAGTGAAGTGATAAG+GGG + chr4_4:77814894-77814913 Msa0705250:intron 35.0%
!! GTATGTTTGGTTCCACTTTT+GGG - chr4_4:77815241-77815260 None:intergenic 35.0%
!! TGTATGTTTGGTTCCACTTT+TGG - chr4_4:77815242-77815261 None:intergenic 35.0%
TTCCCTGTTGAATATGTAAC+TGG + chr4_4:77815427-77815446 Msa0705250:intron 35.0%
ACTTCCTCTAATGTGTCATA+TGG - chr4_4:77815505-77815524 None:intergenic 35.0%
GACACATTAGAGGAAGTAAT+TGG + chr4_4:77815508-77815527 Msa0705250:CDS 35.0%
TAGAGGAAGTAATTGGGAAA+AGG + chr4_4:77815515-77815534 Msa0705250:CDS 35.0%
AGAGGAAGTAATTGGGAAAA+GGG + chr4_4:77815516-77815535 Msa0705250:CDS 35.0%
TTTCACCCCAAAATCTTGAA+GGG - chr4_4:77815560-77815579 None:intergenic 35.0%
ATTTCACCCCAAAATCTTGA+AGG - chr4_4:77815561-77815580 None:intergenic 35.0%
!! ATGAGTGCACATTTTGTTTC+GGG - chr4_4:77815725-77815744 None:intergenic 35.0%
!!! GCTTTTAAAGTATGAGCGTT+AGG + chr4_4:77816203-77816222 Msa0705250:intron 35.0%
TTGAAGGGTAAAAAGGTTAC+AGG - chr4_4:77816309-77816328 None:intergenic 35.0%
CTGAACATTGAAGGGTAAAA+AGG - chr4_4:77816316-77816335 None:intergenic 35.0%
!! TCATGGTGGATAATTGCTAT+GGG + chr4_4:77816358-77816377 Msa0705250:CDS 35.0%
ATATTATCGCATACCACCAT+GGG - chr4_4:77816408-77816427 None:intergenic 35.0%
GCAGTATCACATTTCTACAT+TGG + chr4_4:77816461-77816480 Msa0705250:intron 35.0%
AGTTTGATAAAGAATCCTGG+TGG + chr4_4:77816512-77816531 Msa0705250:CDS 35.0%
TGTTGCTGGGAAAAAGAAAT+TGG + chr4_4:77816559-77816578 Msa0705250:CDS 35.0%
!!! TATCATGAGAGCCTTTTTTC+AGG + chr4_4:77816649-77816668 Msa0705250:CDS 35.0%
!!! ATCATGAGAGCCTTTTTTCA+GGG + chr4_4:77816650-77816669 Msa0705250:CDS 35.0%
TTTCTTTCACCTCAAATGGT+TGG + chr4_4:77816677-77816696 Msa0705250:CDS 35.0%
TTCTTTCACCTCAAATGGTT+GGG + chr4_4:77816678-77816697 Msa0705250:CDS 35.0%
AAACCTGAACTGTATCACAT+CGG - chr4_4:77816864-77816883 None:intergenic 35.0%
TCTAGAAAGAATGATAGCAC+AGG - chr4_4:77816897-77816916 None:intergenic 35.0%
ATACTGAAAGAAACTCCTAC+GGG - chr4_4:77817015-77817034 None:intergenic 35.0%
CATACTGAAAGAAACTCCTA+CGG - chr4_4:77817016-77817035 None:intergenic 35.0%
AATTGATCTTCAATGCCTGT+AGG + chr4_4:77817069-77817088 Msa0705250:intron 35.0%
TCTTTGATATCACTCTTCTC+AGG + chr4_4:77817320-77817339 Msa0705250:intron 35.0%
ACTAGTACTTCCATCAATGA+AGG - chr4_4:77817364-77817383 None:intergenic 35.0%
TAGATTTCAGAACTTCTCCT+AGG - chr4_4:77817558-77817577 None:intergenic 35.0%
ACATATTATACGACCTTCAG+CGG + chr4_4:77817612-77817631 Msa0705250:three_prime_UTR 35.0%
GGTACAAATTCAATTAAGGG+TGG + chr4_4:77817652-77817671 Msa0705250:three_prime_UTR 35.0%
! AGATTTGGTCACTGTTAGTT+CGG - chr4_4:77817703-77817722 None:intergenic 35.0%
!! GTTTTGACCTTGATAGTATG+TGG + chr4_4:77817934-77817953 Msa0705250:three_prime_UTR 35.0%
GTATACACCACATACTATCA+AGG - chr4_4:77817944-77817963 None:intergenic 35.0%
CATCCCTATACTTACAAACA+AGG - chr4_4:77817966-77817985 None:intergenic 35.0%
TGCAATGTGTCTCTTTCTTA+TGG + chr4_4:77817984-77818003 Msa0705250:three_prime_UTR 35.0%
!! GTTAACTTGTGCTGAAAGAA+TGG + chr4_4:77818006-77818025 Msa0705250:three_prime_UTR 35.0%
TGTTGGAATGGAGATTCGAA+CGG - chr4_4:77813707-77813726 None:intergenic 40.0%
TAGCGAATGGTAGATGTTGT+TGG - chr4_4:77813724-77813743 None:intergenic 40.0%
!! AAAAGCTTTAAGAACACGGG+TGG - chr4_4:77813938-77813957 None:intergenic 40.0%
GTGAGTGATTATATCCCACA+TGG + chr4_4:77814335-77814354 Msa0705250:intron 40.0%
GATTATATCCCACATGGACT+CGG + chr4_4:77814341-77814360 Msa0705250:intron 40.0%
CCCATATACCTAATGCCTTA+AGG + chr4_4:77814398-77814417 Msa0705250:intron 40.0%
CATCTCCACTCAAAACCTTA+AGG - chr4_4:77814416-77814435 None:intergenic 40.0%
!!! TAAGGTTTTGAGTGGAGATG+TGG + chr4_4:77814416-77814435 Msa0705250:intron 40.0%
GATGTGGTGTCTAAGTTTCT+TGG + chr4_4:77814432-77814451 Msa0705250:intron 40.0%
TGTTAATGCTGTCAGCACTT+TGG + chr4_4:77814684-77814703 Msa0705250:intron 40.0%
GTTATGGTCATGATGAAGCT+GGG + chr4_4:77814718-77814737 Msa0705250:intron 40.0%
TTATGGTCATGATGAAGCTG+GGG + chr4_4:77814719-77814738 Msa0705250:intron 40.0%
CAACAATTTCTGCAAAAGCC+TGG - chr4_4:77814761-77814780 None:intergenic 40.0%
! CAGGCTTTTGCAGAAATTGT+TGG + chr4_4:77814759-77814778 Msa0705250:intron 40.0%
ATCAGCTATTGTTCGTTCAC+AGG + chr4_4:77814788-77814807 Msa0705250:CDS 40.0%
AGTATTATATGCTGGGAGTG+TGG - chr4_4:77814933-77814952 None:intergenic 40.0%
ACTTGTCAACAGTTCTTCTC+AGG + chr4_4:77815278-77815297 Msa0705250:intron 40.0%
GGCAAATAAAGCACATGTGA+TGG - chr4_4:77815312-77815331 None:intergenic 40.0%
CAACTATAGAGCTATACTGC+TGG - chr4_4:77815399-77815418 None:intergenic 40.0%
TGCTCCATATGACACATTAG+AGG + chr4_4:77815498-77815517 Msa0705250:CDS 40.0%
! TTGGGTTCCCTTCAAGATTT+TGG + chr4_4:77815550-77815569 Msa0705250:CDS 40.0%
! TGGGTTCCCTTCAAGATTTT+GGG + chr4_4:77815551-77815570 Msa0705250:CDS 40.0%
!!! ATTTTTTCATCAGCTTGCCG+AGG + chr4_4:77815658-77815677 Msa0705250:intron 40.0%
CAAAATGTGCACTCATACAG+AGG + chr4_4:77815729-77815748 Msa0705250:CDS 40.0%
AGAGGTCATGTGGTTATTCA+TGG + chr4_4:77815747-77815766 Msa0705250:CDS 40.0%
TTAACTCACACAGGTCACAA+TGG - chr4_4:77815897-77815916 None:intergenic 40.0%
!!! TACAGCAGTCTTGTTTTGCA+TGG + chr4_4:77816071-77816090 Msa0705250:intron 40.0%
AGGTCACAAAAGGAATCAGT+TGG - chr4_4:77816142-77816161 None:intergenic 40.0%
GATGCAAAATCCTGAGTGTT+CGG + chr4_4:77816335-77816354 Msa0705250:intron 40.0%
!! GTCATGGTGGATAATTGCTA+TGG + chr4_4:77816357-77816376 Msa0705250:CDS 40.0%
!! CATGGTGGATAATTGCTATG+GGG + chr4_4:77816359-77816378 Msa0705250:CDS 40.0%
TAATTGCTATGGGGAACTTG+TGG + chr4_4:77816368-77816387 Msa0705250:CDS 40.0%
CATATTATCGCATACCACCA+TGG - chr4_4:77816409-77816428 None:intergenic 40.0%
AATGTGATACTGCACATCCT+TGG - chr4_4:77816454-77816473 None:intergenic 40.0%
GGCAGTTTGATAAAGAATCC+TGG + chr4_4:77816509-77816528 Msa0705250:CDS 40.0%
AAAGGCTCTCATGATATCAC+CGG - chr4_4:77816645-77816664 None:intergenic 40.0%
TCTTTCACCTCAAATGGTTG+GGG + chr4_4:77816679-77816698 Msa0705250:CDS 40.0%
AACCTGAACTGTATCACATC+GGG - chr4_4:77816863-77816882 None:intergenic 40.0%
!! TGGCAGCGAAATTTTGTTTC+TGG + chr4_4:77816954-77816973 Msa0705250:intron 40.0%
!! TGTTTCTGGTAGAAAAGCTG+TGG + chr4_4:77816968-77816987 Msa0705250:intron 40.0%
! TAGAAAAGCTGTGGTTGATG+TGG + chr4_4:77816977-77816996 Msa0705250:intron 40.0%
! AGAAAAGCTGTGGTTGATGT+GGG + chr4_4:77816978-77816997 Msa0705250:intron 40.0%
GTCATACACCAAACCAATTG+CGG + chr4_4:77817162-77817181 Msa0705250:CDS 40.0%
TCATACACCAAACCAATTGC+GGG + chr4_4:77817163-77817182 Msa0705250:CDS 40.0%
TCTGCTCTGATTAACCTTCA+CGG + chr4_4:77817212-77817231 Msa0705250:intron 40.0%
! AATTTGTTTAGGGACCGTGA+AGG - chr4_4:77817229-77817248 None:intergenic 40.0%
TCCATCAATGAAGGTTCCAT+CGG - chr4_4:77817355-77817374 None:intergenic 40.0%
ACTAGTGAGCTTTCATGTGA+TGG + chr4_4:77817378-77817397 Msa0705250:CDS 40.0%
!! TTTGTTTTCCAAATGCAGGG+TGG + chr4_4:77817505-77817524 Msa0705250:intron 40.0%
GTCACTGTTAGTTCGGATTT+CGG - chr4_4:77817696-77817715 None:intergenic 40.0%
!!! GGGTGAGTTGATGTAGATTT+TGG + chr4_4:77817731-77817750 Msa0705250:three_prime_UTR 40.0%
GGTCAAAACAGTTCTTACCA+TGG - chr4_4:77817923-77817942 None:intergenic 40.0%
ATGCGTAGGATAAGCAGAGA+AGG - chr4_4:77813683-77813702 None:intergenic 45.0%
GTTGGAATGGAGATTCGAAC+GGG - chr4_4:77813706-77813725 None:intergenic 45.0%
! TCTGGAACGAAGGGATTGAT+AGG - chr4_4:77813766-77813785 None:intergenic 45.0%
TATCAATCCCTTCGTTCCAG+AGG + chr4_4:77813765-77813784 Msa0705250:CDS 45.0%
GCATTCAGAATTCAGAGCAG+TGG + chr4_4:77813891-77813910 Msa0705250:CDS 45.0%
! GCTTTTCACAATGCTCGACT+TGG + chr4_4:77813952-77813971 Msa0705250:CDS 45.0%
CACAATGAGATGAGCCTGTT+TGG - chr4_4:77814301-77814320 None:intergenic 45.0%
ACAGGCTCATCTCATTGTGT+TGG + chr4_4:77814302-77814321 Msa0705250:intron 45.0%
CAGGCTCATCTCATTGTGTT+GGG + chr4_4:77814303-77814322 Msa0705250:intron 45.0%
ACTCGGAATGGAGGAAACAT+TGG + chr4_4:77814358-77814377 Msa0705250:intron 45.0%
GTGGTGTCTAAGTTTCTTGG+TGG + chr4_4:77814435-77814454 Msa0705250:intron 45.0%
! AATGTGTTGTTAGGGAGTCC+GGG - chr4_4:77814602-77814621 None:intergenic 45.0%
! CAATGTGTTGTTAGGGAGTC+CGG - chr4_4:77814603-77814622 None:intergenic 45.0%
TAATGCTGTCAGCACTTTGG+TGG + chr4_4:77814687-77814706 Msa0705250:intron 45.0%
!! TTTGGTGGTTGCACTGGTTA+TGG + chr4_4:77814702-77814721 Msa0705250:intron 45.0%
GGTTATGGTCATGATGAAGC+TGG + chr4_4:77814717-77814736 Msa0705250:intron 45.0%
TATGGTCATGATGAAGCTGG+GGG + chr4_4:77814720-77814739 Msa0705250:intron 45.0%
! TAGGGGATATGAGGTTGGTT+TGG + chr4_4:77814854-77814873 Msa0705250:intron 45.0%
!! TTGGTTTGGTGGCTGAAGTA+GGG + chr4_4:77814868-77814887 Msa0705250:intron 45.0%
TGGCTGAAGTAGGGGAATTT+AGG + chr4_4:77814877-77814896 Msa0705250:intron 45.0%
AGTGAAGTGATAAGGGGTTG+AGG + chr4_4:77814900-77814919 Msa0705250:intron 45.0%
GTGAAGTGATAAGGGGTTGA+GGG + chr4_4:77814901-77814920 Msa0705250:intron 45.0%
!! GTGCTTTATTTGCCCTCTTG+AGG + chr4_4:77815318-77815337 Msa0705250:intron 45.0%
AAAAGGGTTACCTCATCTCC+TGG - chr4_4:77815344-77815363 None:intergenic 45.0%
! TATCAGCTTTTGGCAGTTGC+TGG + chr4_4:77815475-77815494 Msa0705250:intron 45.0%
GTAATTGGGAAAAGGGACTC+TGG + chr4_4:77815523-77815542 Msa0705250:CDS 45.0%
AAAAGGGACTCTGGTGGTTT+GGG + chr4_4:77815532-77815551 Msa0705250:CDS 45.0%
! GGGTTCCCTTCAAGATTTTG+GGG + chr4_4:77815552-77815571 Msa0705250:CDS 45.0%
GGTGAAATACCGAGAAGTTC+CGG + chr4_4:77815573-77815592 Msa0705250:CDS 45.0%
AGTAGCATACCGGAACTTCT+CGG - chr4_4:77815585-77815604 None:intergenic 45.0%
CTGCTGTAGAGAGTTATCAG+TGG - chr4_4:77816059-77816078 None:intergenic 45.0%
AAATCCTGAGTGTTCGGTCA+TGG + chr4_4:77816341-77816360 Msa0705250:CDS 45.0%
ACATTTCTACATTGGTCGGC+AGG + chr4_4:77816469-77816488 Msa0705250:intron 45.0%
CATTTCTACATTGGTCGGCA+GGG + chr4_4:77816470-77816489 Msa0705250:intron 45.0%
AAGGCTCTCATGATATCACC+GGG - chr4_4:77816644-77816663 None:intergenic 45.0%
ATTGCTTCCCCAACCATTTG+AGG - chr4_4:77816689-77816708 None:intergenic 45.0%
AATGGTTGGGGAAGCAATCA+AGG + chr4_4:77816691-77816710 Msa0705250:CDS 45.0%
CAGAACTTCAGCAATCAGGA+AGG - chr4_4:77816800-77816819 None:intergenic 45.0%
CTTCCTGATTGCTGAAGTTC+TGG + chr4_4:77816798-77816817 Msa0705250:CDS 45.0%
ATGCCAGAACTTCAGCAATC+AGG - chr4_4:77816804-77816823 None:intergenic 45.0%
! TGCTGAAGTTCTGGCATCTA+AGG + chr4_4:77816807-77816826 Msa0705250:CDS 45.0%
! GCTGAAGTTCTGGCATCTAA+GGG + chr4_4:77816808-77816827 Msa0705250:CDS 45.0%
ACCTGAACTGTATCACATCG+GGG - chr4_4:77816862-77816881 None:intergenic 45.0%
TTCCAAGTTGTACAGCCTAC+AGG - chr4_4:77817087-77817106 None:intergenic 45.0%
AAAAAGCAAGGAGACGCTCA+CGG - chr4_4:77817111-77817130 None:intergenic 45.0%
GAACAGCCTCACAAAAAGCA+AGG - chr4_4:77817123-77817142 None:intergenic 45.0%
TCTCAGGTTATCTTTGCCGA+TGG + chr4_4:77817336-77817355 Msa0705250:intron 45.0%
ACAGCAAATGGCTCTCTAAG+AGG - chr4_4:77817405-77817424 None:intergenic 45.0%
!!! GCCATTTGCTGTATTTTGCC+AGG + chr4_4:77817413-77817432 Msa0705250:intron 45.0%
GCCTGGCAAAATACAGCAAA+TGG - chr4_4:77817417-77817436 None:intergenic 45.0%
! CTGTATTTTGCCAGGCATGT+TGG + chr4_4:77817421-77817440 Msa0705250:intron 45.0%
TGATGCAAAACCAACATGCC+TGG - chr4_4:77817434-77817453 None:intergenic 45.0%
TGGCACTCATTGGACTCAAT+GGG + chr4_4:77817525-77817544 Msa0705250:CDS 45.0%
GATAGGAACAGAGAAGCGAG+AGG - chr4_4:77813749-77813768 None:intergenic 50.0%
TATCCCACATGGACTCGGAA+TGG + chr4_4:77814346-77814365 Msa0705250:intron 50.0%
!! CGGCAATGGGTTAAACGTTC+AGG - chr4_4:77814462-77814481 None:intergenic 50.0%
GTTTAACCCATTGCCGTCTC+CGG + chr4_4:77814466-77814485 Msa0705250:intron 50.0%
! CAATGTGTTGTTGGGGAGTC+CGG - chr4_4:77814488-77814507 None:intergenic 50.0%
! ATGTGTTGTTAGGGAGTCCG+GGG - chr4_4:77814601-77814620 None:intergenic 50.0%
CGGACTCCCTAACAACACAT+TGG + chr4_4:77814601-77814620 Msa0705250:intron 50.0%
!! GGGATATGAGGTTGGTTTGG+TGG + chr4_4:77814857-77814876 Msa0705250:intron 50.0%
!! GTTGGTTTGGTGGCTGAAGT+AGG + chr4_4:77814867-77814886 Msa0705250:intron 50.0%
!! TGGTTTGGTGGCTGAAGTAG+GGG + chr4_4:77814869-77814888 Msa0705250:intron 50.0%
TTATTTGCCCTCTTGAGGCC+AGG + chr4_4:77815323-77815342 Msa0705250:intron 50.0%
ATTGGGAAAAGGGACTCTGG+TGG + chr4_4:77815526-77815545 Msa0705250:CDS 50.0%
GAAAAGGGACTCTGGTGGTT+TGG + chr4_4:77815531-77815550 Msa0705250:CDS 50.0%
TTTCATCAGCTTGCCGAGGA+TGG + chr4_4:77815662-77815681 Msa0705250:intron 50.0%
GCACTCATACAGAGGTCATG+TGG + chr4_4:77815737-77815756 Msa0705250:CDS 50.0%
TGCTATGGGGAACTTGTGGA+AGG + chr4_4:77816372-77816391 Msa0705250:CDS 50.0%
TTATCGCATACCACCATGGG+AGG - chr4_4:77816405-77816424 None:intergenic 50.0%
!! CATGTGGCGGATATGTTGCT+GGG + chr4_4:77816546-77816565 Msa0705250:CDS 50.0%
! GTGGATTGTGGTTCAACTCC+CGG + chr4_4:77816623-77816642 Msa0705250:CDS 50.0%
CCTGAACTGTATCACATCGG+GGG - chr4_4:77816861-77816880 None:intergenic 50.0%
TGGGCAAAAACTTGTCCCGT+AGG + chr4_4:77816997-77817016 Msa0705250:intron 50.0%
TGCCTGTAGGCTGTACAACT+TGG + chr4_4:77817082-77817101 Msa0705250:intron 50.0%
!!! GCGTCTCCTTGCTTTTTGTG+AGG + chr4_4:77817114-77817133 Msa0705250:CDS 50.0%
TGTTCAGAGAAGCTCTCCTG+TGG + chr4_4:77817138-77817157 Msa0705250:CDS 50.0%
GTTCAGAGAAGCTCTCCTGT+GGG + chr4_4:77817139-77817158 Msa0705250:CDS 50.0%
TTCAGAGAAGCTCTCCTGTG+GGG + chr4_4:77817140-77817159 Msa0705250:CDS 50.0%
AGTGGTACCCGCAATTGGTT+TGG - chr4_4:77817173-77817192 None:intergenic 50.0%
CTCTGATGCATATCCAGGAG+TGG - chr4_4:77817191-77817210 None:intergenic 50.0%
CACTCCTGGATATGCATCAG+AGG + chr4_4:77817189-77817208 Msa0705250:CDS 50.0%
CAGACCTCTGATGCATATCC+AGG - chr4_4:77817196-77817215 None:intergenic 50.0%
GCCGATGGAACCTTCATTGA+TGG + chr4_4:77817351-77817370 Msa0705250:CDS 50.0%
AATGAGTGCCACCCTGCATT+TGG - chr4_4:77817516-77817535 None:intergenic 50.0%
AAATGCAGGGTGGCACTCAT+TGG + chr4_4:77817515-77817534 Msa0705250:intron 50.0%
GTGGCACTCATTGGACTCAA+TGG + chr4_4:77817524-77817543 Msa0705250:CDS 50.0%
GGCACTCATTGGACTCAATG+GGG + chr4_4:77817526-77817545 Msa0705250:CDS 50.0%
!! ACTCAATGGGGACTAGTCCT+AGG + chr4_4:77817538-77817557 Msa0705250:CDS 50.0%
AGTGACCAAATCTCGTGCAG+CGG + chr4_4:77817710-77817729 Msa0705250:three_prime_UTR 50.0%
GAGATTCGAACGGGATGCGT+AGG - chr4_4:77813697-77813716 None:intergenic 55.0%
! GAAGCGAGAGGCATAGCGAA+TGG - chr4_4:77813737-77813756 None:intergenic 55.0%
!! GCGAGTACCTCTGGAACGAA+GGG - chr4_4:77813775-77813794 None:intergenic 55.0%
!! AGCGAGTACCTCTGGAACGA+AGG - chr4_4:77813776-77813795 None:intergenic 55.0%
GAAGAGTGAGCGAGTACCTC+TGG - chr4_4:77813784-77813803 None:intergenic 55.0%
CCTCCATTCCGAGTCCATGT+GGG - chr4_4:77814352-77814371 None:intergenic 55.0%
TCCTCCATTCCGAGTCCATG+TGG - chr4_4:77814353-77814372 None:intergenic 55.0%
CGGACTCCCCAACAACACAT+TGG + chr4_4:77814486-77814505 Msa0705250:intron 55.0%
TTTAACCCATTGCCGCTCCC+CGG + chr4_4:77814581-77814600 Msa0705250:intron 55.0%
! CAGCACTTTGGTGGTTGCAC+TGG + chr4_4:77814696-77814715 Msa0705250:intron 55.0%
CTCATCTCCTGGCCTCAAGA+GGG - chr4_4:77815333-77815352 None:intergenic 55.0%
CCAGTCAAGTCCACCATCCT+CGG - chr4_4:77815678-77815697 None:intergenic 55.0%
TCCTGAGTGTTCGGTCATGG+TGG + chr4_4:77816344-77816363 Msa0705250:CDS 55.0%
TCCACCATGACCGAACACTC+AGG - chr4_4:77816348-77816367 None:intergenic 55.0%
!! GGAAGGCATTGAACCTCCCA+TGG + chr4_4:77816389-77816408 Msa0705250:CDS 55.0%
!! AGGCATTGAACCTCCCATGG+TGG + chr4_4:77816392-77816411 Msa0705250:CDS 55.0%
TCGGCAGGGTGCAGATTTGA+TGG + chr4_4:77816484-77816503 Msa0705250:intron 55.0%
GCAGGGTGCAGATTTGATGG+CGG + chr4_4:77816487-77816506 Msa0705250:intron 55.0%
! CAGGGTGCAGATTTGATGGC+GGG + chr4_4:77816488-77816507 Msa0705250:intron 55.0%
CATGGAGCAATCGTTCCACC+AGG - chr4_4:77816530-77816549 None:intergenic 55.0%
GGTGGAACGATTGCTCCATG+TGG + chr4_4:77816530-77816549 Msa0705250:CDS 55.0%
GGAACGATTGCTCCATGTGG+CGG + chr4_4:77816533-77816552 Msa0705250:CDS 55.0%
CCAGCAACATATCCGCCACA+TGG - chr4_4:77816548-77816567 None:intergenic 55.0%
!! CCATGTGGCGGATATGTTGC+TGG + chr4_4:77816545-77816564 Msa0705250:CDS 55.0%
ACCACAATCCACACCAAGCC+CGG - chr4_4:77816615-77816634 None:intergenic 55.0%
CCCCCGATGTGATACAGTTC+AGG + chr4_4:77816858-77816877 Msa0705250:CDS 55.0%
!! GGTTTGGTGTATGACCCCAC+AGG - chr4_4:77817157-77817176 None:intergenic 55.0%
GTGACCAAATCTCGTGCAGC+GGG + chr4_4:77817711-77817730 Msa0705250:three_prime_UTR 55.0%
CCCACATGGACTCGGAATGG+AGG + chr4_4:77814349-77814368 Msa0705250:intron 60.0%
GTTGTTGGGGAGTCCGGAGA+CGG - chr4_4:77814482-77814501 None:intergenic 60.0%
TTGTTAGGGAGTCCGGGGAG+CGG - chr4_4:77814596-77814615 None:intergenic 60.0%
GGGACGTGAAGCTCTTGACC+AGG + chr4_4:77814740-77814759 Msa0705250:intron 60.0%
CCTCATCTCCTGGCCTCAAG+AGG - chr4_4:77815334-77815353 None:intergenic 60.0%
CCTCTTGAGGCCAGGAGATG+AGG + chr4_4:77815331-77815350 Msa0705250:intron 60.0%
CATCAGCTTGCCGAGGATGG+TGG + chr4_4:77815665-77815684 Msa0705250:intron 60.0%
!! CCGAGGATGGTGGACTTGAC+TGG + chr4_4:77815675-77815694 Msa0705250:CDS 60.0%
CCACAATCCACACCAAGCCC+GGG - chr4_4:77816614-77816633 None:intergenic 60.0%
TATCACATCGGGGGACGCGA+GGG - chr4_4:77816852-77816871 None:intergenic 60.0%
CCAGGAGTGGTACCCGCAAT+TGG - chr4_4:77817178-77817197 None:intergenic 60.0%
CCAATTGCGGGTACCACTCC+TGG + chr4_4:77817175-77817194 Msa0705250:CDS 60.0%
CTCACCCGCTGCACGAGATT+TGG - chr4_4:77817718-77817737 None:intergenic 60.0%
GGGAGTCCGGAGACGGCAAT+GGG - chr4_4:77814475-77814494 None:intergenic 65.0%
!! CCCGGGCTTGGTGTGGATTG+TGG + chr4_4:77816611-77816630 Msa0705250:CDS 65.0%
GTATCACATCGGGGGACGCG+AGG - chr4_4:77816853-77816872 None:intergenic 65.0%
GGGGAGTCCGGAGACGGCAA+TGG - chr4_4:77814476-77814495 None:intergenic 70.0%
GGAGTCCGGGGAGCGGCAAT+GGG - chr4_4:77814589-77814608 None:intergenic 70.0%
CACCAAGCCCGGGCGCAGAA+AGG - chr4_4:77816604-77816623 None:intergenic 70.0%
!! TTCTGCGCCCGGGCTTGGTG+TGG + chr4_4:77816604-77816623 Msa0705250:CDS 70.0%
GGGAGTCCGGGGAGCGGCAA+TGG - chr4_4:77814590-77814609 None:intergenic 75.0%
GCAGCGCGCCTTTCTGCGCC+CGG + chr4_4:77816593-77816612 Msa0705250:CDS 75.0%
CAGCGCGCCTTTCTGCGCCC+GGG + chr4_4:77816594-77816613 Msa0705250:CDS 75.0%
CGCCTTTCTGCGCCCGGGCT+TGG + chr4_4:77816599-77816618 Msa0705250:CDS 75.0%
CATCGGGGGACGCGAGGGAG+TGG - chr4_4:77816847-77816866 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 77813622 77818030 77813622 ID=Msa0705250;Name=Msa0705250
chr4_4 mRNA 77813622 77818030 77813622 ID=Msa0705250-mRNA-1;Parent=Msa0705250;Name=Msa0705250-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.7|0.72|1|0.9|0.90|11|448|412
chr4_4 exon 77813622 77813786 77813622 ID=Msa0705250-mRNA-1:exon:24765;Parent=Msa0705250-mRNA-1
chr4_4 exon 77813868 77813981 77813868 ID=Msa0705250-mRNA-1:exon:24766;Parent=Msa0705250-mRNA-1
chr4_4 exon 77814762 77814809 77814762 ID=Msa0705250-mRNA-1:exon:24767;Parent=Msa0705250-mRNA-1
chr4_4 exon 77815481 77815594 77815481 ID=Msa0705250-mRNA-1:exon:24768;Parent=Msa0705250-mRNA-1
chr4_4 exon 77815671 77815820 77815671 ID=Msa0705250-mRNA-1:exon:24769;Parent=Msa0705250-mRNA-1
chr4_4 exon 77816336 77816413 77816336 ID=Msa0705250-mRNA-1:exon:24770;Parent=Msa0705250-mRNA-1
chr4_4 exon 77816491 77816712 77816491 ID=Msa0705250-mRNA-1:exon:24771;Parent=Msa0705250-mRNA-1
chr4_4 exon 77816793 77816879 77816793 ID=Msa0705250-mRNA-1:exon:24772;Parent=Msa0705250-mRNA-1
chr4_4 exon 77817091 77817210 77817091 ID=Msa0705250-mRNA-1:exon:24773;Parent=Msa0705250-mRNA-1
chr4_4 exon 77817342 77817422 77817342 ID=Msa0705250-mRNA-1:exon:24774;Parent=Msa0705250-mRNA-1
chr4_4 exon 77817523 77818030 77817523 ID=Msa0705250-mRNA-1:exon:24775;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77813622 77813786 77813622 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77813868 77813981 77813868 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77814762 77814809 77814762 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77815481 77815594 77815481 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77815671 77815820 77815671 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77816336 77816413 77816336 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77816491 77816712 77816491 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77816793 77816879 77816793 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77817091 77817210 77817091 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77817342 77817422 77817342 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 CDS 77817523 77817582 77817523 ID=Msa0705250-mRNA-1:cds;Parent=Msa0705250-mRNA-1
chr4_4 three_prime_UTR 77817583 77818030 77817583 ID=Msa0705250-mRNA-1:three_prime_utr;Parent=Msa0705250-mRNA-1
Gene Sequence

>Msa0705250

AACGAAAAAGAACAAAAGCAAGATAAGGAGGGAAGAAGAATGTTGAGCATAACGTGCGCCTTCTCTGCTTATCCTACGCATCCCGTTCGAATCTCCATTCCAACAACATCTACCATTCGCTATGCCTCTCGCTTCTCTGTTCCTATCAATCCCTTCGTTCCAGAGGTTATTGAAGCCGTTGATGCATTGCATTCAGAATTCAGAGCAGTGGATAATTTAGTTGCATACAATACCACCCGTGTTCTTAAAGCTTTTCACAATGCTCGACTTGGTTCTCATGCTTTTGCAGAAATTGTTGGAGCAGAATCAGCTATTGTTCGTTCACAGCTTTTGGCAGTTGCTGGTGCTCCATATGACACATTAGAGGAAGTAATTGGGAAAAGGGACTCTGGTGGTTTGGGTTCCCTTCAAGATTTTGGGGTGAAATACCGAGAAGTTCCGCTTGCCGAGGATGGTGGACTTGACTGGAATGCACTGATGCATGCTGTCAAACCCGAAACAAAATGTGCACTCATACAGAGGTCATGTGGTTATTCATGGCGTCAGAGTTTGAGTGTTAATGACATAGGGAGAGCGATACAAATTATCAAAATGCAAAATCCTGAGTGTTCGGTCATGGTGGATAATTGCTATGGGGAACTTGTGGAAGGCATTGAACCTCCCATGGTGGGTGCAGATTTGATGGCGGGCAGTTTGATAAAGAATCCTGGTGGAACGATTGCTCCATGTGGCGGATATGTTGCTGGGAAAAAGAAATTGGTTGAAGCAGCTGCAGCGCGCCTTTCTGCGCCCGGGCTTGGTGTGGATTGTGGTTCAACTCCCGGTGATATCATGAGAGCCTTTTTTCAGGGATTATTTCTTTCACCTCAAATGGTTGGGGAAGCAATCAAGGGTTCCTTCCTGATTGCTGAAGTTCTGGCATCTAAGGGTTATAAAGTGCAGCCACTCCCTCGCGTCCCCCGATGTGATACAGTTCAGGCTGTACAACTTGGAAGCCGTGAGCGTCTCCTTGCTTTTTGTGAGGCTGTTCAGAGAAGCTCTCCTGTGGGGTCATACACCAAACCAATTGCGGGTACCACTCCTGGATATGCATCAGAGGTTATCTTTGCCGATGGAACCTTCATTGATGGAAGTACTAGTGAGCTTTCATGTGATGGACCTCTTAGAGAGCCATTTGCTGGTGGCACTCATTGGACTCAATGGGGACTAGTCCTAGGAGAAGTTCTGAAATCTATATGA

Protein sequence

>Msa0705250

NEKEQKQDKEGRRMLSITCAFSAYPTHPVRISIPTTSTIRYASRFSVPINPFVPEVIEAVDALHSEFRAVDNLVAYNTTRVLKAFHNARLGSHAFAEIVGAESAIVRSQLLAVAGAPYDTLEEVIGKRDSGGLGSLQDFGVKYREVPLAEDGGLDWNALMHAVKPETKCALIQRSCGYSWRQSLSVNDIGRAIQIIKMQNPECSVMVDNCYGELVEGIEPPMVGADLMAGSLIKNPGGTIAPCGGYVAGKKKLVEAAAARLSAPGLGVDCGSTPGDIMRAFFQGLFLSPQMVGEAIKGSFLIAEVLASKGYKVQPLPRVPRCDTVQAVQLGSRERLLAFCEAVQRSSPVGSYTKPIAGTTPGYASEVIFADGTFIDGSTSELSCDGPLREPFAGGTHWTQWGLVLGEVLKSI*