AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261440 MtrunA17_Chr2g0323531 97.222 288 7 1 1 288 1 287 0.0 575
Msa0261440 MtrunA17_Chr4g0022631 75.958 287 66 3 1 284 1 287 1.18e-153 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261440 AT2G20890.1 65.836 281 88 4 3 282 5 278 2.48e-128 367

Find 93 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCAATTCTGCTTCTAAAA+TGG 0.248095 2_2:-59851271 Msa0261440:CDS
TACATAAGGCCGTGTATTAA+AGG 0.276638 2_2:+59848052 None:intergenic
AATTTACTATCATCAGTTAT+TGG 0.300905 2_2:-59848132 Msa0261440:three_prime_UTR
GTACTTTCAGTTTCTAGTTA+TGG 0.302790 2_2:-59851439 Msa0261440:exon
TCAATTCGACATCAATTTCA+TGG 0.311232 2_2:-59848159 Msa0261440:three_prime_UTR
GAGTAAATAACTTTATATTT+CGG 0.316353 2_2:-59848191 Msa0261440:three_prime_UTR
AATACACGGCCTTATGTATC+AGG 0.326090 2_2:-59848047 Msa0261440:three_prime_UTR
GACTCAGAAAATATCCTTCA+TGG 0.330991 2_2:+59851493 None:intergenic
GAGCCACAGAAGGCTAATAA+TGG 0.333096 2_2:-59848514 Msa0261440:CDS
GTTCTGATATGTTTGGAATT+CGG 0.343615 2_2:-59851329 Msa0261440:CDS
TCATGAAACCTGTATTGTTC+TGG 0.346032 2_2:+59850091 None:intergenic
CCCTTCAACTTCTCCTTCTC+TGG 0.352035 2_2:+59849569 None:intergenic
TACTCAGAATGTATGCCTTT+AGG 0.361473 2_2:+59848209 None:intergenic
TATGATTCTGTATTTGCTCT+TGG 0.366606 2_2:-59850211 Msa0261440:CDS
GCTACCTTGTCTAAAATTGT+TGG 0.381994 2_2:+59849438 None:intergenic
GTTTCAAGTTCTGATATGTT+TGG 0.384390 2_2:-59851336 Msa0261440:CDS
TGCAAAGAAGTTGGAAGATT+GGG 0.391763 2_2:-59849631 Msa0261440:CDS
TTGGTCGTTTATATGCCTTT+AGG 0.392956 2_2:+59850311 None:intergenic
TTTAAGGCTTGTGAGTTCAA+TGG 0.400418 2_2:-59847894 Msa0261440:three_prime_UTR
CCTTCTATTATAAAGTTGTA+TGG 0.402693 2_2:-59848084 Msa0261440:three_prime_UTR
GAAGAAGAAAAGAGAAGAAA+GGG 0.415256 2_2:-59848539 Msa0261440:CDS
AGAAGAAGAAAAGAGAAGAA+AGG 0.421659 2_2:-59848540 Msa0261440:CDS
TGCTTTCAAAACATTTGTGT+TGG 0.423270 2_2:+59851550 None:intergenic
CAATGCATGTCTTCTGTCAC+AGG 0.424463 2_2:-59851243 Msa0261440:intron
CCATACAACTTTATAATAGA+AGG 0.425241 2_2:+59848084 None:intergenic
AGCTTATATTAATGCATTGA+AGG 0.425504 2_2:-59850119 Msa0261440:CDS
AGCCACAGAAGGCTAATAAT+GGG 0.431472 2_2:-59848513 Msa0261440:CDS
CCGTATGCTGCTTTCCAAGC+TGG 0.431919 2_2:-59849066 Msa0261440:CDS
AGGAAGATCCAGAACAATAC+AGG 0.432189 2_2:-59850099 Msa0261440:intron
ATGCAAAGAAGTTGGAAGAT+TGG 0.439138 2_2:-59849632 Msa0261440:CDS
CGACAAAAGAAGCGTTGATC+GGG 0.440456 2_2:-59849102 Msa0261440:CDS
ATGATTTCTCATACTGTACT+TGG 0.446409 2_2:-59848357 Msa0261440:three_prime_UTR
CAGAGTAGATGCAAAGAAGT+TGG 0.448896 2_2:-59849640 Msa0261440:CDS
TTTACCCACTCAATTTGTAA+TGG 0.450196 2_2:+59848489 None:intergenic
CAACTCAGTGGATTAAGAAA+AGG 0.464136 2_2:+59848397 None:intergenic
AAGAAGCGTTGATCGGGACT+TGG 0.466265 2_2:-59849096 Msa0261440:CDS
TTTGTCCTTCCTTTCCATGA+AGG 0.471047 2_2:-59851507 Msa0261440:five_prime_UTR
TTGTAATAATTGTAAACCTA+TGG 0.474262 2_2:+59847948 None:intergenic
TATCTATAACAATGTGCTGC+AGG 0.485681 2_2:-59850281 Msa0261440:CDS
CAAGTGTGAGTTATTGCCAT+AGG 0.490030 2_2:-59847964 Msa0261440:three_prime_UTR
GAAGAAAAGAGAAGAAAGGG+TGG 0.490264 2_2:-59848536 Msa0261440:CDS
GGCTCAAAACTCAACTTCAC+TGG 0.505541 2_2:-59849604 Msa0261440:CDS
CTATGGCAATAACTCACACT+TGG 0.507763 2_2:+59847965 None:intergenic
TCCAGAGAAGGAGAAGTTGA+AGG 0.514458 2_2:-59849570 Msa0261440:CDS
CACTGTCTATGATAAACTCA+TGG 0.515316 2_2:-59850182 Msa0261440:CDS
AGCACATTGTTATAGATACT+AGG 0.518130 2_2:+59850286 None:intergenic
TCGACAAAAGAAGCGTTGAT+CGG 0.519628 2_2:-59849103 Msa0261440:CDS
AGAAAATATCCTTCATGGAA+AGG 0.520550 2_2:+59851498 None:intergenic
TTGCATTTGCCAACTCAAGA+AGG 0.522030 2_2:+59849466 None:intergenic
CATTGTGTTGGTGTTAGAGT+TGG 0.522081 2_2:-59851291 Msa0261440:CDS
AATATCCTTCATGGAAAGGA+AGG 0.522272 2_2:+59851502 None:intergenic
GCACATTGTTATAGATACTA+GGG 0.527794 2_2:+59850287 None:intergenic
CCAGAGAAGGAGAAGTTGAA+GGG 0.532334 2_2:-59849569 Msa0261440:CDS
TTCAAGCAAAAGAGCTGCAA+AGG 0.532457 2_2:-59849043 Msa0261440:CDS
GGAAGGACAAATTTCAGAGA+TGG 0.534270 2_2:+59851519 None:intergenic
TGCAAAGGGAATTTATTGAC+AGG 0.536331 2_2:-59849028 Msa0261440:intron
GTCTATGATAAACTCATGGA+AGG 0.537912 2_2:-59850178 Msa0261440:CDS
GAATGAAGACCTGATACATA+AGG 0.540387 2_2:+59848038 None:intergenic
ATTAATATAAGCTTTGAAGA+TGG 0.540950 2_2:+59850129 None:intergenic
GACAAAGCTAAATTTCCTAA+AGG 0.549896 2_2:-59850326 Msa0261440:CDS
TATAGTCGTTTCTTTGCAGT+AGG 0.552503 2_2:-59849498 Msa0261440:CDS
GCCCCATTATTAGCCTTCTG+TGG 0.553177 2_2:+59848511 None:intergenic
TAGCTTTGTCTCAGAAACGC+TGG 0.563749 2_2:+59850339 None:intergenic
AAAATAAATTTGTGACTGCA+AGG 0.563842 2_2:+59848254 None:intergenic
AGCTTTGTCTCAGAAACGCT+GGG 0.565578 2_2:+59850340 None:intergenic
AGAAAGGGTGGAGCCACAGA+AGG 0.570202 2_2:-59848524 Msa0261440:CDS
TGAGAAGGGTGAACAAATTG+TGG 0.579520 2_2:+59848305 None:intergenic
TCAAGCAAAAGAGCTGCAAA+GGG 0.580848 2_2:-59849042 Msa0261440:CDS
TTGTTATAGATACTAGGGAT+TGG 0.585601 2_2:+59850292 None:intergenic
GATTCCTCGTACCATTGTGT+TGG 0.585869 2_2:-59851303 Msa0261440:CDS
GATTAAGAAAAGGCGTGTCA+AGG 0.595646 2_2:+59848407 None:intergenic
ACTGTACTTGGTTTACATTG+TGG 0.597011 2_2:-59848345 Msa0261440:three_prime_UTR
TACGTGCAAATTGTGTGAGA+AGG 0.602699 2_2:+59848290 None:intergenic
TCATCTATTCCTTTAATACA+CGG 0.603629 2_2:-59848061 Msa0261440:three_prime_UTR
GAAGTTGGAAGATTGGGCTA+AGG 0.605561 2_2:-59849625 Msa0261440:CDS
TGGGGCCATTACAAATTGAG+TGG 0.608088 2_2:-59848494 Msa0261440:exon
CCAGCTTGGAAAGCAGCATA+CGG 0.608856 2_2:+59849066 None:intergenic
CAGAGAAGGAGAAGTTGAAG+GGG 0.615968 2_2:-59849568 Msa0261440:CDS
TGATCTTAATATGCACATTG+TGG 0.621344 2_2:+59848008 None:intergenic
GGAAGGGTATTCTAGTGAAG+AGG 0.630073 2_2:-59850161 Msa0261440:CDS
TTCTTGCTTATCCAACTCAG+TGG 0.633736 2_2:+59848385 None:intergenic
GGGGCCATTACAAATTGAGT+GGG 0.634138 2_2:-59848493 Msa0261440:exon
ACGTGCAAATTGTGTGAGAA+GGG 0.638575 2_2:+59848291 None:intergenic
AAGGATAAGAAATCTTCACT+TGG 0.639221 2_2:+59848426 None:intergenic
GAAACGAGTAGAAGACAAAG+TGG 0.651979 2_2:+59851362 None:intergenic
TTAATATGCACATTGTGGCA+TGG 0.655770 2_2:+59848013 None:intergenic
CAACTCTAACACCAACACAA+TGG 0.660091 2_2:+59851292 None:intergenic
TCTATGATAAACTCATGGAA+GGG 0.662278 2_2:-59850177 Msa0261440:CDS
GCCACAGAAGGCTAATAATG+GGG 0.663091 2_2:-59848512 Msa0261440:CDS
GCCAACATAACAGCTTTGTG+TGG 0.674098 2_2:-59849135 Msa0261440:intron
AAACGAGTAGAAGACAAAGT+GGG 0.682984 2_2:+59851363 None:intergenic
ACATATCAGAACTTGAAACA+AGG 0.683739 2_2:+59851340 None:intergenic
AACACCAACACAATGGTACG+AGG 0.686845 2_2:+59851299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAACAATATAGCAAA+GGG + chr2_2:59849393-59849412 None:intergenic 15.0%
!! AATAAAAAACAATATAGCAA+AGG + chr2_2:59849394-59849413 None:intergenic 15.0%
!! GAGTAAATAACTTTATATTT+CGG - chr2_2:59851256-59851275 Msa0261440:CDS 15.0%
!! AAAGTATAACGATGAAAAAA+AGG + chr2_2:59847873-59847892 None:intergenic 20.0%
!!! ATATGTTTAGGTTATTTTAG+TGG - chr2_2:59848437-59848456 Msa0261440:three_prime_UTR 20.0%
!!! NNNNNNNNNGTGGACTATTT+TGG + chr2_2:59848822-59848841 None:intergenic 20.0%
!!! TTTATTTAGTCTTCCTTTTT+TGG + chr2_2:59849023-59849042 None:intergenic 20.0%
!! TGAATCTTATTATTGTTAGT+TGG - chr2_2:59849056-59849075 Msa0261440:CDS 20.0%
!!! ATTAATATAAGCTTTGAAGA+TGG + chr2_2:59849321-59849340 None:intergenic 20.0%
!! GATTTATGATAGTTAATCTT+TGG - chr2_2:59850288-59850307 Msa0261440:CDS 20.0%
!! AATTTACTATCATCAGTTAT+TGG - chr2_2:59851315-59851334 Msa0261440:CDS 20.0%
!! TTGTAATAATTGTAAACCTA+TGG + chr2_2:59851502-59851521 None:intergenic 20.0%
!!! TATCTAAGAACACTATTTTA+AGG - chr2_2:59851537-59851556 Msa0261440:five_prime_UTR 20.0%
!!! GGTTTGTGTTTTTGTTAATT+TGG - chr2_2:59848225-59848244 Msa0261440:three_prime_UTR 25.0%
!!! TCCAAATCAAGTTTTAGAAA+AGG - chr2_2:59848249-59848268 Msa0261440:three_prime_UTR 25.0%
!!! CCAAATCAAGTTTTAGAAAA+GGG - chr2_2:59848250-59848269 Msa0261440:three_prime_UTR 25.0%
! TTATTATTGTTAGTTGGTCA+TGG - chr2_2:59849062-59849081 Msa0261440:CDS 25.0%
! TATTATTGTTAGTTGGTCAT+GGG - chr2_2:59849063-59849082 Msa0261440:CDS 25.0%
! AGCTTATATTAATGCATTGA+AGG - chr2_2:59849328-59849347 Msa0261440:intron 25.0%
!! ATTTTCAATCATTGAGTCAA+AGG + chr2_2:59849442-59849461 None:intergenic 25.0%
! TTAGATTCTAACTTAGATTC+TGG + chr2_2:59849652-59849671 None:intergenic 25.0%
! TCACAAGAAAATTTATCTGA+AGG - chr2_2:59849728-59849747 Msa0261440:intron 25.0%
! TTATTGAAGTTGAACCTATA+AGG - chr2_2:59850113-59850132 Msa0261440:CDS 25.0%
! AAATAAGAACTAGACCTTAT+AGG + chr2_2:59850130-59850149 None:intergenic 25.0%
! ATCACTTCAAACTACTTTAT+TGG + chr2_2:59850171-59850190 None:intergenic 25.0%
!! AGTAGTTTGAAGTGATTAAA+TGG - chr2_2:59850175-59850194 Msa0261440:CDS 25.0%
!!! TAAGTGTGTGTTTGATTTTA+CGG - chr2_2:59850551-59850570 Msa0261440:intron 25.0%
!!! ATTAGACTTTAACTTGTGAA+TGG + chr2_2:59850752-59850771 None:intergenic 25.0%
!!! ATTAGACTTTAACTTGTGAA+TGG + chr2_2:59850752-59850771 None:intergenic 25.0%
!!! TATATGTTTTTTTTTACCCC+AGG - chr2_2:59850883-59850902 Msa0261440:intron 25.0%
!!! ATATGTTTTTTTTTACCCCA+GGG - chr2_2:59850884-59850903 Msa0261440:intron 25.0%
! AAAATAAATTTGTGACTGCA+AGG + chr2_2:59851196-59851215 None:intergenic 25.0%
! CCATACAACTTTATAATAGA+AGG + chr2_2:59851366-59851385 None:intergenic 25.0%
! CCTTCTATTATAAAGTTGTA+TGG - chr2_2:59851363-59851382 Msa0261440:CDS 25.0%
! TCATCTATTCCTTTAATACA+CGG - chr2_2:59851386-59851405 Msa0261440:CDS 25.0%
TGCTTTCAAAACATTTGTGT+TGG + chr2_2:59847900-59847919 None:intergenic 30.0%
AGAAAATATCCTTCATGGAA+AGG + chr2_2:59847952-59847971 None:intergenic 30.0%
!! GTACTTTCAGTTTCTAGTTA+TGG - chr2_2:59848008-59848027 Msa0261440:three_prime_UTR 30.0%
ACATATCAGAACTTGAAACA+AGG + chr2_2:59848110-59848129 None:intergenic 30.0%
!! GTTTCAAGTTCTGATATGTT+TGG - chr2_2:59848111-59848130 Msa0261440:three_prime_UTR 30.0%
! GTTCTGATATGTTTGGAATT+CGG - chr2_2:59848118-59848137 Msa0261440:three_prime_UTR 30.0%
!!! CCCTTTTCTAAAACTTGATT+TGG + chr2_2:59848253-59848272 None:intergenic 30.0%
!! ATCCTTTTTGGCATATGTTT+AGG - chr2_2:59848425-59848444 Msa0261440:three_prime_UTR 30.0%
AACCTAAACATATGCCAAAA+AGG + chr2_2:59848430-59848449 None:intergenic 30.0%
TTTGAGCAGTTTATAAAGAC+TGG + chr2_2:59848506-59848525 None:intergenic 30.0%
TAAACTGCTCAAAACTCTAA+TGG - chr2_2:59848513-59848532 Msa0261440:CDS 30.0%
AAGTCATTGTCTCAATTGTA+AGG + chr2_2:59848585-59848604 None:intergenic 30.0%
GTCAAAAAACTTGGGAAAAA+CGG - chr2_2:59848620-59848639 Msa0261440:intron 30.0%
CCTCAGTTCAACAAAAATAA+GGG + chr2_2:59848682-59848701 None:intergenic 30.0%
ACCTCAGTTCAACAAAAATA+AGG + chr2_2:59848683-59848702 None:intergenic 30.0%
!!! NNNNNGTGGACTATTTTGGT+AGG + chr2_2:59848818-59848837 None:intergenic 30.0%
GACAAAGCTAAATTTCCTAA+AGG - chr2_2:59849121-59849140 Msa0261440:CDS 30.0%
TTGTTATAGATACTAGGGAT+TGG + chr2_2:59849158-59849177 None:intergenic 30.0%
GCACATTGTTATAGATACTA+GGG + chr2_2:59849163-59849182 None:intergenic 30.0%
AGCACATTGTTATAGATACT+AGG + chr2_2:59849164-59849183 None:intergenic 30.0%
TATGATTCTGTATTTGCTCT+TGG - chr2_2:59849236-59849255 Msa0261440:intron 30.0%
TCTATGATAAACTCATGGAA+GGG - chr2_2:59849270-59849289 Msa0261440:intron 30.0%
! AGAACCAACAATTTTAGACA+AGG - chr2_2:59850005-59850024 Msa0261440:intron 30.0%
CATCGTGCATGATTTATAAT+TGG - chr2_2:59850047-59850066 Msa0261440:intron 30.0%
TACTTTATTGGAACTTCTAG+AGG + chr2_2:59850159-59850178 None:intergenic 30.0%
GCATCTTTATGAATGTATGT+AGG - chr2_2:59850266-59850285 Msa0261440:CDS 30.0%
TATAGAGTAGATGGAATATC+AGG + chr2_2:59850717-59850736 None:intergenic 30.0%
ACTCAGATTTATAGAGTAGA+TGG + chr2_2:59850726-59850745 None:intergenic 30.0%
GATTTACAATTACAGCTTGA+TGG - chr2_2:59850833-59850852 Msa0261440:intron 30.0%
AGAAGAAGAAAAGAGAAGAA+AGG - chr2_2:59850907-59850926 Msa0261440:intron 30.0%
GAAGAAGAAAAGAGAAGAAA+GGG - chr2_2:59850908-59850927 Msa0261440:intron 30.0%
TTTACCCACTCAATTTGTAA+TGG + chr2_2:59850961-59850980 None:intergenic 30.0%
AAGGATAAGAAATCTTCACT+TGG + chr2_2:59851024-59851043 None:intergenic 30.0%
ATGATTTCTCATACTGTACT+TGG - chr2_2:59851090-59851109 Msa0261440:intron 30.0%
TCAATTCGACATCAATTTCA+TGG - chr2_2:59851288-59851307 Msa0261440:CDS 30.0%
! AAGGAGAAAAATGAAAGTGT+TGG + chr2_2:59851347-59851366 None:intergenic 30.0%
TGATCTTAATATGCACATTG+TGG + chr2_2:59851442-59851461 None:intergenic 30.0%
AATATCCTTCATGGAAAGGA+AGG + chr2_2:59847948-59847967 None:intergenic 35.0%
GACTCAGAAAATATCCTTCA+TGG + chr2_2:59847957-59847976 None:intergenic 35.0%
AAACGAGTAGAAGACAAAGT+GGG + chr2_2:59848087-59848106 None:intergenic 35.0%
! TGGCAATTCTGCTTCTAAAA+TGG - chr2_2:59848176-59848195 Msa0261440:three_prime_UTR 35.0%
AGTTAGTTGCATGCATGATT+AGG - chr2_2:59848361-59848380 Msa0261440:three_prime_UTR 35.0%
TCTTATGTACCGTAATCTCT+TGG - chr2_2:59848400-59848419 Msa0261440:three_prime_UTR 35.0%
CTTATGTACCGTAATCTCTT+GGG - chr2_2:59848401-59848420 Msa0261440:three_prime_UTR 35.0%
TTATGTACCGTAATCTCTTG+GGG - chr2_2:59848402-59848421 Msa0261440:three_prime_UTR 35.0%
TTTAGTGGTGAGTTCTATTG+TGG - chr2_2:59848452-59848471 Msa0261440:three_prime_UTR 35.0%
CTATTGTGGATCACATTGAT+AGG - chr2_2:59848466-59848485 Msa0261440:three_prime_UTR 35.0%
TCACATTGATAGGTAGTTCA+CGG - chr2_2:59848476-59848495 Msa0261440:three_prime_UTR 35.0%
TCTCAATTGTAAGGACAAGA+AGG + chr2_2:59848576-59848595 None:intergenic 35.0%
!!! TCCCAAGTTTTTTGACAAAC+CGG + chr2_2:59848616-59848635 None:intergenic 35.0%
!!! CCCTTATTTTTGTTGAACTG+AGG - chr2_2:59848679-59848698 Msa0261440:intron 35.0%
CACTGTCTTTCGAAAATAGA+AGG + chr2_2:59848741-59848760 None:intergenic 35.0%
ATCGTCGGAAATTTCAATGA+TGG + chr2_2:59848768-59848787 None:intergenic 35.0%
CTAACACCTAATGCCAAAAA+AGG - chr2_2:59849007-59849026 Msa0261440:intron 35.0%
!!! AGTCTTCCTTTTTTGGCATT+AGG + chr2_2:59849016-59849035 None:intergenic 35.0%
TTGGTCGTTTATATGCCTTT+AGG + chr2_2:59849139-59849158 None:intergenic 35.0%
TATCTATAACAATGTGCTGC+AGG - chr2_2:59849166-59849185 Msa0261440:intron 35.0%
CACTGTCTATGATAAACTCA+TGG - chr2_2:59849265-59849284 Msa0261440:intron 35.0%
GTCTATGATAAACTCATGGA+AGG - chr2_2:59849269-59849288 Msa0261440:intron 35.0%
TCATGAAACCTGTATTGTTC+TGG + chr2_2:59849359-59849378 None:intergenic 35.0%
CAATCATTGAGTCAAAGGTT+TGG + chr2_2:59849437-59849456 None:intergenic 35.0%
ATGCAAAGAAGTTGGAAGAT+TGG - chr2_2:59849815-59849834 Msa0261440:intron 35.0%
TGCAAAGAAGTTGGAAGATT+GGG - chr2_2:59849816-59849835 Msa0261440:intron 35.0%
! GTTGAGTTTTTATCCAGAGA+AGG - chr2_2:59849865-59849884 Msa0261440:intron 35.0%
AAGGATATTGCAAAAAGAGC+AGG - chr2_2:59849907-59849926 Msa0261440:intron 35.0%
TATAGTCGTTTCTTTGCAGT+AGG - chr2_2:59849949-59849968 Msa0261440:intron 35.0%
! GCTACCTTGTCTAAAATTGT+TGG + chr2_2:59850012-59850031 None:intergenic 35.0%
TGCAAAGGGAATTTATTGAC+AGG - chr2_2:59850419-59850438 Msa0261440:intron 35.0%
ACTCAGATTTATGGAGTAGA+TGG + chr2_2:59850777-59850796 None:intergenic 35.0%
GAATGGCATACTCAGATTTA+TGG + chr2_2:59850786-59850805 None:intergenic 35.0%
!! CAACTCAGTGGATTAAGAAA+AGG + chr2_2:59851053-59851072 None:intergenic 35.0%
! CTTTTCTTAATCCACTGAGT+TGG - chr2_2:59851051-59851070 Msa0261440:intron 35.0%
ACTGTACTTGGTTTACATTG+TGG - chr2_2:59851102-59851121 Msa0261440:intron 35.0%
CTAAAAACAAGCAAGCCTAA+AGG - chr2_2:59851223-59851242 Msa0261440:intron 35.0%
TACTCAGAATGTATGCCTTT+AGG + chr2_2:59851241-59851260 None:intergenic 35.0%
TACATAAGGCCGTGTATTAA+AGG + chr2_2:59851398-59851417 None:intergenic 35.0%
GAATGAAGACCTGATACATA+AGG + chr2_2:59851412-59851431 None:intergenic 35.0%
TTAATATGCACATTGTGGCA+TGG + chr2_2:59851437-59851456 None:intergenic 35.0%
! TTTAAGGCTTGTGAGTTCAA+TGG - chr2_2:59851553-59851572 Msa0261440:five_prime_UTR 35.0%
GGAAGGACAAATTTCAGAGA+TGG + chr2_2:59847931-59847950 None:intergenic 40.0%
TTTGTCCTTCCTTTCCATGA+AGG - chr2_2:59847940-59847959 Msa0261440:three_prime_UTR 40.0%
GAAACGAGTAGAAGACAAAG+TGG + chr2_2:59848088-59848107 None:intergenic 40.0%
CAACTCTAACACCAACACAA+TGG + chr2_2:59848158-59848177 None:intergenic 40.0%
!! CATTGTGTTGGTGTTAGAGT+TGG - chr2_2:59848156-59848175 Msa0261440:three_prime_UTR 40.0%
AAAGGATCCCCAAGAGATTA+CGG + chr2_2:59848412-59848431 None:intergenic 40.0%
! AATCTCTTGGGGATCCTTTT+TGG - chr2_2:59848413-59848432 Msa0261440:three_prime_UTR 40.0%
GACAATGACTTGATAAGTGC+CGG - chr2_2:59848594-59848613 Msa0261440:intron 40.0%
!! TGCCGGTTTGTCAAAAAACT+TGG - chr2_2:59848611-59848630 Msa0261440:intron 40.0%
!! GCCGGTTTGTCAAAAAACTT+GGG - chr2_2:59848612-59848631 Msa0261440:intron 40.0%
AGGAAGATCCAGAACAATAC+AGG - chr2_2:59849348-59849367 Msa0261440:intron 40.0%
TTGATCAGATGGTCTAGATG+TGG + chr2_2:59849566-59849585 None:intergenic 40.0%
GGCAAACAAACTCTAGATTG+TGG + chr2_2:59849631-59849650 None:intergenic 40.0%
CTTTGCATCTACTCTGTAGA+GGG + chr2_2:59849803-59849822 None:intergenic 40.0%
TCTTTGCATCTACTCTGTAG+AGG + chr2_2:59849804-59849823 None:intergenic 40.0%
CAGAGTAGATGCAAAGAAGT+TGG - chr2_2:59849807-59849826 Msa0261440:intron 40.0%
!! AGAAGTTGAAGGGGTTTTGA+AGG - chr2_2:59849888-59849907 Msa0261440:intron 40.0%
TGCAAAAAGAGCAGGAGAAA+AGG - chr2_2:59849915-59849934 Msa0261440:intron 40.0%
GCAAAAAGAGCAGGAGAAAA+GGG - chr2_2:59849916-59849935 Msa0261440:intron 40.0%
!! TCTTTTTCGCCTTCTTGAGT+TGG - chr2_2:59849972-59849991 Msa0261440:intron 40.0%
TTGCATTTGCCAACTCAAGA+AGG + chr2_2:59849984-59850003 None:intergenic 40.0%
AAGGTAGCCCAATTCATTCA+AGG - chr2_2:59850024-59850043 Msa0261440:intron 40.0%
CACGATGCCTTGAATGAATT+GGG + chr2_2:59850034-59850053 None:intergenic 40.0%
TCGTAGGAGGAAAACATATC+AGG + chr2_2:59850207-59850226 None:intergenic 40.0%
! TTGCTACTTAGAGCAATCGT+AGG + chr2_2:59850223-59850242 None:intergenic 40.0%
!! TCGACAAAAGAAGCGTTGAT+CGG - chr2_2:59850344-59850363 Msa0261440:CDS 40.0%
TTCAAGCAAAAGAGCTGCAA+AGG - chr2_2:59850404-59850423 Msa0261440:intron 40.0%
TCAAGCAAAAGAGCTGCAAA+GGG - chr2_2:59850405-59850424 Msa0261440:intron 40.0%
! TCTCTTTTCTTCTTCTCCCT+GGG + chr2_2:59850903-59850922 None:intergenic 40.0%
! TTCTCTTTTCTTCTTCTCCC+TGG + chr2_2:59850904-59850923 None:intergenic 40.0%
GAAGAAAAGAGAAGAAAGGG+TGG - chr2_2:59850911-59850930 Msa0261440:intron 40.0%
AGCCACAGAAGGCTAATAAT+GGG - chr2_2:59850934-59850953 Msa0261440:intron 40.0%
! GATTAAGAAAAGGCGTGTCA+AGG + chr2_2:59851043-59851062 None:intergenic 40.0%
TTCTTGCTTATCCAACTCAG+TGG + chr2_2:59851065-59851084 None:intergenic 40.0%
TGAGAAGGGTGAACAAATTG+TGG + chr2_2:59851145-59851164 None:intergenic 40.0%
ACGTGCAAATTGTGTGAGAA+GGG + chr2_2:59851159-59851178 None:intergenic 40.0%
TACGTGCAAATTGTGTGAGA+AGG + chr2_2:59851160-59851179 None:intergenic 40.0%
! AATACACGGCCTTATGTATC+AGG - chr2_2:59851400-59851419 Msa0261440:CDS 40.0%
CTATGGCAATAACTCACACT+TGG + chr2_2:59851485-59851504 None:intergenic 40.0%
CAAGTGTGAGTTATTGCCAT+AGG - chr2_2:59851483-59851502 Msa0261440:five_prime_UTR 40.0%
GATTCCTCGTACCATTGTGT+TGG - chr2_2:59848144-59848163 Msa0261440:three_prime_UTR 45.0%
AACACCAACACAATGGTACG+AGG + chr2_2:59848151-59848170 None:intergenic 45.0%
CAATGCATGTCTTCTGTCAC+AGG - chr2_2:59848204-59848223 Msa0261440:three_prime_UTR 45.0%
CATTGATAGGTAGTTCACGG+TGG - chr2_2:59848479-59848498 Msa0261440:exon 45.0%
!! ACCTCTGAAGTAGAAGCTCT+CGG - chr2_2:59848549-59848568 Msa0261440:intron 45.0%
! ACTGAGGTTGATCAAGTCTG+AGG - chr2_2:59848695-59848714 Msa0261440:intron 45.0%
ATCAAGTCTGAGGAGTGACA+AGG - chr2_2:59848705-59848724 Msa0261440:intron 45.0%
GACTGGTACTTGACAATCGT+CGG + chr2_2:59848783-59848802 None:intergenic 45.0%
GATTGTCAAGTACCAGTCCA+CGG - chr2_2:59848785-59848804 Msa0261440:intron 45.0%
! TTTTGGTAGGTTGTCTACCG+TGG + chr2_2:59848805-59848824 None:intergenic 45.0%
ATAGGCATGAGTGTACGAGA+TGG - chr2_2:59848950-59848969 Msa0261440:intron 45.0%
! AGCTTTGTCTCAGAAACGCT+GGG + chr2_2:59849110-59849129 None:intergenic 45.0%
!! TAGCTTTGTCTCAGAAACGC+TGG + chr2_2:59849111-59849130 None:intergenic 45.0%
!! GGAAGGGTATTCTAGTGAAG+AGG - chr2_2:59849286-59849305 Msa0261440:intron 45.0%
ACTATGTCCAGCAGAGGTTT+GGG - chr2_2:59849503-59849522 Msa0261440:CDS 45.0%
CATGCAGTCAACCACAATCA+CGG + chr2_2:59849600-59849619 None:intergenic 45.0%
GAAGTTGGAAGATTGGGCTA+AGG - chr2_2:59849822-59849841 Msa0261440:intron 45.0%
GGCTCAAAACTCAACTTCAC+TGG - chr2_2:59849843-59849862 Msa0261440:intron 45.0%
TCCAGAGAAGGAGAAGTTGA+AGG - chr2_2:59849877-59849896 Msa0261440:intron 45.0%
CCAGAGAAGGAGAAGTTGAA+GGG - chr2_2:59849878-59849897 Msa0261440:intron 45.0%
CAGAGAAGGAGAAGTTGAAG+GGG - chr2_2:59849879-59849898 Msa0261440:intron 45.0%
GCACGATGCCTTGAATGAAT+TGG + chr2_2:59850035-59850054 None:intergenic 45.0%
CTACTTAGAGCAATCGTAGG+AGG + chr2_2:59850220-59850239 None:intergenic 45.0%
! GCCAACATAACAGCTTTGTG+TGG - chr2_2:59850312-59850331 Msa0261440:CDS 45.0%
GCCACACAAAGCTGTTATGT+TGG + chr2_2:59850316-59850335 None:intergenic 45.0%
!! CGACAAAAGAAGCGTTGATC+GGG - chr2_2:59850345-59850364 Msa0261440:CDS 45.0%
! CTCTTTTGCTTGAACCAGCT+TGG + chr2_2:59850398-59850417 None:intergenic 45.0%
CAGAGAGGAGAACAACTGAA+GGG + chr2_2:59850466-59850485 None:intergenic 45.0%
ACAGAGAGGAGAACAACTGA+AGG + chr2_2:59850467-59850486 None:intergenic 45.0%
TGTTCTCCTCTCTGTCATCA+TGG - chr2_2:59850472-59850491 Msa0261440:intron 45.0%
GAAAAGCCATGATGACAGAG+AGG + chr2_2:59850481-59850500 None:intergenic 45.0%
! CTCTTTTCTTCTTCTCCCTG+GGG + chr2_2:59850902-59850921 None:intergenic 45.0%
GAGCCACAGAAGGCTAATAA+TGG - chr2_2:59850933-59850952 Msa0261440:intron 45.0%
GCCACAGAAGGCTAATAATG+GGG - chr2_2:59850935-59850954 Msa0261440:intron 45.0%
TGGGGCCATTACAAATTGAG+TGG - chr2_2:59850953-59850972 Msa0261440:intron 45.0%
GGGGCCATTACAAATTGAGT+GGG - chr2_2:59850954-59850973 Msa0261440:intron 45.0%
!! ATAATAATAACAATTAATAA+CGG - chr2_2:59849460-59849479 Msa0261440:CDS 5.0%
ACCGAGAGCTTCTACTTCAG+AGG + chr2_2:59848553-59848572 None:intergenic 50.0%
AAGTCTGAGGAGTGACAAGG+TGG - chr2_2:59848708-59848727 Msa0261440:intron 50.0%
GCATGAGTGTACGAGATGGT+GGG - chr2_2:59848954-59848973 Msa0261440:intron 50.0%
CTGCTGGACATAGTCTTCAG+TGG + chr2_2:59849497-59849516 None:intergenic 50.0%
CTGAAGACTATGTCCAGCAG+AGG - chr2_2:59849497-59849516 Msa0261440:CDS 50.0%
GACTATGTCCAGCAGAGGTT+TGG - chr2_2:59849502-59849521 Msa0261440:CDS 50.0%
TGGCTGATTGCGTGGAATCA+GGG + chr2_2:59849546-59849565 None:intergenic 50.0%
TCTAGATGTGGCTGATTGCG+TGG + chr2_2:59849554-59849573 None:intergenic 50.0%
CTGTTGCGGTCTTGATCAGA+TGG + chr2_2:59849577-59849596 None:intergenic 50.0%
AACCACAATCACGGCTGTTG+CGG + chr2_2:59849591-59849610 None:intergenic 50.0%
CCCTTCAACTTCTCCTTCTC+TGG + chr2_2:59849881-59849900 None:intergenic 50.0%
!! AAGAAGCGTTGATCGGGACT+TGG - chr2_2:59850351-59850370 Msa0261440:intron 50.0%
CCAGCTTGGAAAGCAGCATA+CGG + chr2_2:59850384-59850403 None:intergenic 50.0%
!! GCCCCATTATTAGCCTTCTG+TGG + chr2_2:59850939-59850958 None:intergenic 50.0%
GTAGGTTGTCTACCGTGGAC+TGG + chr2_2:59848800-59848819 None:intergenic 55.0%
GGCATGAGTGTACGAGATGG+TGG - chr2_2:59848953-59848972 Msa0261440:intron 55.0%
CACACAACCCAAACCTCTGC+TGG + chr2_2:59849513-59849532 None:intergenic 55.0%
GGCTGATTGCGTGGAATCAG+GGG + chr2_2:59849545-59849564 None:intergenic 55.0%
GTGGCTGATTGCGTGGAATC+AGG + chr2_2:59849547-59849566 None:intergenic 55.0%
!! CCGTATGCTGCTTTCCAAGC+TGG - chr2_2:59850381-59850400 Msa0261440:intron 55.0%
AGAAAGGGTGGAGCCACAGA+AGG - chr2_2:59850923-59850942 Msa0261440:intron 55.0%
GACCGCAACAGCCGTGATTG+TGG - chr2_2:59849586-59849605 Msa0261440:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 59847852 59851617 59847852 ID=Msa0261440;Name=Msa0261440
chr2_2 mRNA 59847852 59851617 59847852 ID=Msa0261440-mRNA-1;Parent=Msa0261440;Name=Msa0261440-mRNA-1;_AED=0.02;_eAED=0.02;_QI=175|1|1|1|1|1|5|646|288
chr2_2 exon 59847852 59848564 59847852 ID=Msa0261440-mRNA-1:exon:18431;Parent=Msa0261440-mRNA-1
chr2_2 exon 59849029 59849144 59849029 ID=Msa0261440-mRNA-1:exon:18430;Parent=Msa0261440-mRNA-1
chr2_2 exon 59849443 59849659 59849443 ID=Msa0261440-mRNA-1:exon:18429;Parent=Msa0261440-mRNA-1
chr2_2 exon 59850100 59850367 59850100 ID=Msa0261440-mRNA-1:exon:18428;Parent=Msa0261440-mRNA-1
chr2_2 exon 59851244 59851617 59851244 ID=Msa0261440-mRNA-1:exon:18427;Parent=Msa0261440-mRNA-1
chr2_2 five_prime_UTR 59851443 59851617 59851443 ID=Msa0261440-mRNA-1:five_prime_utr;Parent=Msa0261440-mRNA-1
chr2_2 CDS 59851244 59851442 59851244 ID=Msa0261440-mRNA-1:cds;Parent=Msa0261440-mRNA-1
chr2_2 CDS 59850100 59850367 59850100 ID=Msa0261440-mRNA-1:cds;Parent=Msa0261440-mRNA-1
chr2_2 CDS 59849443 59849659 59849443 ID=Msa0261440-mRNA-1:cds;Parent=Msa0261440-mRNA-1
chr2_2 CDS 59849029 59849144 59849029 ID=Msa0261440-mRNA-1:cds;Parent=Msa0261440-mRNA-1
chr2_2 CDS 59848498 59848564 59848498 ID=Msa0261440-mRNA-1:cds;Parent=Msa0261440-mRNA-1
chr2_2 three_prime_UTR 59847852 59848497 59847852 ID=Msa0261440-mRNA-1:three_prime_utr;Parent=Msa0261440-mRNA-1
Gene Sequence

>Msa0261440

ATGGCTGCACTAACTTCTTTGTCATTCTCAGCAACTACTCAATGCTCACAGAGAAAACCCACTTTGTCTTCTACTCGTTTCCTTGTTTCAAGTTCTGATATGTTTGGAATTCGGACAGATTCCTCGTACCATTGTGTTGGTGTTAGAGTTGGCAATTCTGCTTCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGATGTTCCCAGCGTTTCTGAGACAAAGCTAAATTTCCTAAAGGCATATAAACGACCAATCCCTAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTTCAACATCATTTAATGAGATACAAGACATCATATCAATATGATTCTGTATTTGCTCTTGGTTTTGTCACTGTCTATGATAAACTCATGGAAGGGTATTCTAGTGAAGAGGAGCGAGATACCATCTTCAAAGCTTATATTAATGCATTGAAGGAAGATCCAGAACAATACAGAGTAGATGCAAAGAAGTTGGAAGATTGGGCTAAGGCTCAAAACTCAACTTCACTGGTTGAGTTTTTATCCAGAGAAGGAGAAGTTGAAGGGGTTTTGAAGGATATTGCAAAAAGAGCAGGAGAAAAGGGTGAATTCAGTTATAGTCGTTTCTTTGCAGTAGGTCTTTTTCGCCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGACAAGCTTTGTGTGGCTTTGAACATCGACAAAAGAAGCGTTGATCGGGACTTGGATGTGTACCGTATGCTGCTTTCCAAGCTGGTTCAAGCAAAAGAGCTGCAAAGGGAATTTATTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGTGGAGCCACAGAAGGCTAATAATGGGGCCATTACAAATTGA

Protein sequence

>Msa0261440

MAALTSLSFSATTQCSQRKPTLSSTRFLVSSSDMFGIRTDSSYHCVGVRVGNSASKMVIQCMSSVTDVPSVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFALGFVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRVDAKKLEDWAKAQNSTSLVEFLSREGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCVALNIDKRSVDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANNGAITN*