AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1133740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133740 MtrunA17_Chr7g0245291 95.308 341 10 2 4 338 5 345 0.0 644
Msa1133740 MtrunA17_Chr7g0245261 76.506 332 64 4 14 332 1 331 4.28e-161 454
Msa1133740 MtrunA17_Chr7g0240091 34.483 232 126 8 107 318 223 448 1.11e-29 118
Msa1133740 MtrunA17_Chr4g0020011 32.328 232 136 6 105 319 151 378 2.29e-28 113
Msa1133740 MtrunA17_Chr2g0320711 33.190 232 129 8 107 318 210 435 6.54e-25 104
Msa1133740 MtrunA17_Chr3g0090071 30.000 230 142 7 105 319 163 388 2.76e-23 99.4
Msa1133740 MtrunA17_Chr4g0039291 30.131 229 143 4 105 318 162 388 3.04e-23 99.4
Msa1133740 MtrunA17_Chr3g0114241 27.755 245 152 7 104 326 483 724 7.43e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1133740 AT3G08640.1 69.323 251 69 3 88 335 90 335 3.15e-123 357
Msa1133740 AT3G08630.1 71.311 244 65 3 96 335 95 337 9.38e-120 349
Msa1133740 AT2G37860.3 32.258 248 141 8 93 318 190 432 4.27e-28 114
Msa1133740 AT2G37860.4 32.258 248 141 8 93 318 190 432 4.27e-28 114
Msa1133740 AT5G22790.1 34.061 229 132 7 107 318 207 433 6.51e-27 110
Msa1133740 AT5G12470.1 30.172 232 143 5 105 320 157 385 3.28e-24 102
Msa1133740 AT3G56140.2 26.809 235 153 5 104 319 256 490 1.36e-17 84.0
Msa1133740 AT2G40400.2 26.667 240 155 6 99 318 461 699 2.11e-17 83.6
Msa1133740 AT2G40400.1 26.667 240 155 6 99 318 461 699 2.11e-17 83.6
Msa1133740 AT3G56140.1 26.923 234 152 5 104 318 475 708 2.46e-17 83.6
Msa1133740 AT3G56140.3 26.923 234 152 5 104 318 475 708 2.46e-17 83.6
Msa1133740 AT2G37860.2 28.302 159 96 4 94 236 191 347 5.18e-12 66.6
Msa1133740 AT2G37860.1 28.302 159 96 4 94 236 191 347 5.18e-12 66.6
Msa1133740 AT5G24690.1 29.508 183 102 5 109 277 240 409 1.16e-11 66.2
Msa1133740 AT2G40400.3 25.131 191 125 4 99 272 461 650 1.23e-11 66.2

Find 131 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCCAAATGAAAACATTT+TGG 0.167163 7_3:+87475932 Msa1133740:three_prime_UTR
GGGGATTTGGAATAAGTTTC+TGG 0.173819 7_3:+87475816 Msa1133740:three_prime_UTR
AATACATGGTTATACTAATT+TGG 0.177826 7_3:-87475889 None:intergenic
TATAACCATGTATTGGATTT+TGG 0.192405 7_3:+87475898 Msa1133740:three_prime_UTR
ATTTGGCACGTTAATGTTTC+AGG 0.197131 7_3:-87475872 None:intergenic
ACCTGGTGCCTATAGTTTAT+TGG 0.200815 7_3:+87475186 Msa1133740:CDS
TGTTGGAGGGGATGGTGGTG+GGG 0.239897 7_3:+87474802 Msa1133740:CDS
TCTCACTTGGGCTGCTCATA+TGG 0.247103 7_3:+87475372 Msa1133740:CDS
ATGGCTACTAGGCCTAATTT+TGG 0.248476 7_3:+87475013 Msa1133740:CDS
CGATCCACAGTTTCCTTTCA+AGG 0.273759 7_3:+87474943 Msa1133740:CDS
TTTGTTGGAGGGGATGGTGG+TGG 0.275850 7_3:+87474800 Msa1133740:CDS
AATGTAGGTGGAGGCTTGTT+TGG 0.286617 7_3:-87475340 None:intergenic
AAGTCAGGTGATTCATCTTT+TGG 0.290733 7_3:+87474875 Msa1133740:CDS
AGTTCATTCAACCCAAAATT+AGG 0.294007 7_3:-87475025 None:intergenic
ATCGCTTTGTTGGTGTTGTT+TGG 0.298708 7_3:-87475647 None:intergenic
TACCTTGCTGTTCTAGAATC+AGG 0.298976 7_3:+87474427 Msa1133740:CDS
GTTGGAGGGGATGGTGGTGG+GGG 0.308403 7_3:+87474803 Msa1133740:CDS
TTTGGAACTTTGGTGTATAA+AGG 0.311619 7_3:+87475214 Msa1133740:CDS
GTTTCAACCTTTGAGGCAAA+TGG 0.317585 7_3:-87474772 None:intergenic
GGAGTTGGTCGTGGTGGTGG+TGG 0.321521 7_3:+87474824 Msa1133740:CDS
ATGTAGGTGGAGGCTTGTTT+GGG 0.323476 7_3:-87475339 None:intergenic
TGGTGGTGGAGATGGAAATT+CGG 0.330418 7_3:+87474838 Msa1133740:CDS
TTGTTGGAGGGGATGGTGGT+GGG 0.333341 7_3:+87474801 Msa1133740:CDS
GGTTCAAACATGTGACTCTT+AGG 0.337899 7_3:-87475166 None:intergenic
TCACAATTGGAGGTTGGATT+AGG 0.342575 7_3:+87475583 Msa1133740:CDS
GGGCTAGGTGCTGGTCTTGT+TGG 0.343612 7_3:+87475256 Msa1133740:CDS
ACTCAACCCCATTGAGAGTT+TGG 0.360058 7_3:-87475417 None:intergenic
ATTGGATAGGTTTGGAACTT+TGG 0.360848 7_3:+87475204 Msa1133740:CDS
TTCTGAATGGTTGGAGATCA+AGG 0.362688 7_3:+87474912 Msa1133740:CDS
GGAGAAAGTGCTTAATCCTT+TGG 0.363328 7_3:+87475447 Msa1133740:CDS
AACTGAGGTTGCGGAAATAA+TGG 0.363963 7_3:-87474716 None:intergenic
TACAGATCAAATGGAAACTA+TGG 0.365842 7_3:+87474637 Msa1133740:intron
TATAGTTTATTGGATAGGTT+TGG 0.365890 7_3:+87475196 Msa1133740:CDS
CTCACTTGGGCTGCTCATAT+GGG 0.366434 7_3:+87475373 Msa1133740:CDS
GGTGGTGGAGATGGAAATTC+GGG 0.372633 7_3:+87474839 Msa1133740:CDS
CTTGTTTGGGGACTCAAAGC+TGG 0.378323 7_3:-87475326 None:intergenic
AAGCTAAGTTTCAACCTTTG+AGG 0.381239 7_3:-87474779 None:intergenic
ACGTTAATGTTTCAGGTTGT+AGG 0.381616 7_3:-87475865 None:intergenic
AGACCTCAGTTGTGGTTCTC+AGG 0.383144 7_3:+87475476 Msa1133740:CDS
TCGCTTTGTTGGTGTTGTTT+GGG 0.384484 7_3:-87475646 None:intergenic
GCCATTGTTGGGCTAGGTGC+TGG 0.386014 7_3:+87475247 Msa1133740:CDS
TTGAGGCAAATGGGTTGGTT+TGG 0.392267 7_3:-87474762 None:intergenic
AGGTTGAAACTTAGCTTTGT+TGG 0.393032 7_3:+87474785 Msa1133740:CDS
GATTGAAGCTATCGCTTTGT+TGG 0.393856 7_3:-87475657 None:intergenic
AGGTGTGCGAACAATGTTCT+TGG 0.403297 7_3:+87475496 Msa1133740:CDS
CATTGCTGAATGGTCTCACT+TGG 0.404560 7_3:+87475359 Msa1133740:CDS
TTGCTTTGTTACAGATCAAA+TGG 0.408267 7_3:+87474628 Msa1133740:intron
AAATTAGTATAACCATGTAT+TGG 0.409196 7_3:+87475891 Msa1133740:three_prime_UTR
CTTAGCTTTGTTGGAGGGGA+TGG 0.412949 7_3:+87474794 Msa1133740:CDS
GTTGGAACAGCACTTTCAAA+TGG 0.416673 7_3:+87475274 Msa1133740:CDS
GGTGTGCGAACAATGTTCTT+GGG 0.418885 7_3:+87475497 Msa1133740:CDS
AAACCTATCCAATAAACTAT+AGG 0.423191 7_3:-87475194 None:intergenic
GGAAATTCGGGAGGTGATGA+TGG 0.424238 7_3:+87474851 Msa1133740:CDS
GTGCCTATAGTTTATTGGAT+AGG 0.425685 7_3:+87475191 Msa1133740:CDS
GTGATGTTGGCAAGGTTGAC+AGG 0.427456 7_3:+87475532 Msa1133740:CDS
CTCAGGTACCAAACTCTCAA+TGG 0.432392 7_3:+87475409 Msa1133740:CDS
TTGAAAGGTAAAAGAGGCTT+TGG 0.435948 7_3:+87475614 Msa1133740:exon
TCAGGTACCAAACTCTCAAT+GGG 0.440391 7_3:+87475410 Msa1133740:CDS
TTCGTTTCTGCTTTATTGGT+AGG 0.445097 7_3:+87475972 Msa1133740:three_prime_UTR
TGAGAAGAAGCCATCACAAT+TGG 0.446713 7_3:+87475570 Msa1133740:CDS
TATGTAGCGTAGATTGAGAT+GGG 0.448626 7_3:+87475795 Msa1133740:three_prime_UTR
CAAGGTTCTGAGCGAGGAGT+TGG 0.461312 7_3:+87474961 Msa1133740:CDS
TATCTGTTGGCACCAACATT+GGG 0.462339 7_3:+87475103 Msa1133740:CDS
TTTCAACCTTTGAGGCAAAT+GGG 0.463281 7_3:-87474771 None:intergenic
AACCAACCCATTTGCCTCAA+AGG 0.474724 7_3:+87474765 Msa1133740:CDS
ATTTGGAATAAGTTTCTGGC+TGG 0.476114 7_3:+87475820 Msa1133740:three_prime_UTR
GGTCGTGGTGGTGGTGGAGA+TGG 0.482227 7_3:+87474830 Msa1133740:CDS
TGGGTACGTTTCTGAATGGT+TGG 0.486586 7_3:+87474903 Msa1133740:CDS
AGCTTTGTTGGAGGGGATGG+TGG 0.486688 7_3:+87474797 Msa1133740:CDS
TTGGAACAGCACTTTCAAAT+GGG 0.488566 7_3:+87475275 Msa1133740:CDS
GGAGGTGATGATGGAAAGTC+AGG 0.497516 7_3:+87474860 Msa1133740:CDS
AGTGCATGACTCTGACCAAA+TGG 0.499488 7_3:-87474680 None:intergenic
AACAGCACTTTCAAATGGGT+TGG 0.504935 7_3:+87475279 Msa1133740:CDS
AACCTTTGAGGCAAATGGGT+TGG 0.505493 7_3:-87474767 None:intergenic
GTGAGACCATTCAGCAATGT+AGG 0.514573 7_3:-87475355 None:intergenic
GAAACTTAGCTTTGTTGGAG+GGG 0.522668 7_3:+87474790 Msa1133740:CDS
GGTATTCAAGACCTCAGTTG+TGG 0.525273 7_3:+87475468 Msa1133740:CDS
TTGAAACTTAGCTTTGTTGG+AGG 0.527400 7_3:+87474788 Msa1133740:CDS
GTATCTGTTGGCACCAACAT+TGG 0.527660 7_3:+87475102 Msa1133740:CDS
CAATTATGAAACTGAGGTTG+CGG 0.533344 7_3:-87474725 None:intergenic
TGGGTTTCAGCAGCAACCTC+AGG 0.535353 7_3:+87475392 Msa1133740:CDS
GTATGTAGCGTAGATTGAGA+TGG 0.535679 7_3:+87475794 Msa1133740:three_prime_UTR
CCTCCACCTACATTGCTGAA+TGG 0.535956 7_3:+87475349 Msa1133740:CDS
TGAAACTTAGCTTTGTTGGA+GGG 0.537812 7_3:+87474789 Msa1133740:CDS
GGAGGTTGGATTAGGTGAGA+AGG 0.538906 7_3:+87475591 Msa1133740:CDS
GAAGAAGCCATCACAATTGG+AGG 0.539032 7_3:+87475573 Msa1133740:CDS
TTGTTTGGGGACTCAAAGCT+GGG 0.541835 7_3:-87475325 None:intergenic
TCCTTTCAAGGTTCTGAGCG+AGG 0.543017 7_3:+87474955 Msa1133740:CDS
TCCTCGCTCAGAACCTTGAA+AGG 0.543217 7_3:-87474956 None:intergenic
GGTCAGTACGAGGAAGAAGA+TGG 0.546188 7_3:+87475300 Msa1133740:CDS
AAGCCATCACAATTGGAGGT+TGG 0.549494 7_3:+87475577 Msa1133740:CDS
CGCGAGCTCTACAACAACCT+TGG 0.552559 7_3:-87475705 None:intergenic
AGAAGGTTGAAAGGTAAAAG+AGG 0.556993 7_3:+87475608 Msa1133740:exon
GTGTGCGAACAATGTTCTTG+GGG 0.557898 7_3:+87475498 Msa1133740:CDS
TCTGAATGGTTGGAGATCAA+GGG 0.560720 7_3:+87474913 Msa1133740:CDS
CTGAAAGAGTTTGTCAGAGT+AGG 0.565170 7_3:-87475761 None:intergenic
CAATGGGGTTGAGTTCATGT+TGG 0.565831 7_3:+87475426 Msa1133740:CDS
TGGAGGATTAAAACGCAGAA+GGG 0.566901 7_3:-87474660 None:intergenic
CATTGAGAGTTTGGTACCTG+AGG 0.567191 7_3:-87475408 None:intergenic
GATTAGGTGAGAAGGTTGAA+AGG 0.569180 7_3:+87475599 Msa1133740:CDS
CCATTCAGCAATGTAGGTGG+AGG 0.577563 7_3:-87475349 None:intergenic
ATGGAGGATTAAAACGCAGA+AGG 0.579827 7_3:-87474661 None:intergenic
GGACAAGATGCAAAGATAGC+CGG 0.583704 7_3:-87475145 None:intergenic
TTGACAGGGTCACAAAATGC+TGG 0.588376 7_3:+87475547 Msa1133740:CDS
TGTAGGTGGAGGCTTGTTTG+GGG 0.588831 7_3:-87475338 None:intergenic
TCCAATAAACTATAGGCACC+AGG 0.590594 7_3:-87475187 None:intergenic
CAAGGTTGTTGTAGAGCTCG+CGG 0.595690 7_3:+87475706 Msa1133740:three_prime_UTR
ACTGTAGCAGATCCCAATGT+TGG 0.599025 7_3:-87475115 None:intergenic
ATCTGCTACAGTCAAAGTGC+CGG 0.599258 7_3:+87475126 Msa1133740:CDS
AAGAGTCACATGTTTGAACC+TGG 0.604135 7_3:+87475169 Msa1133740:CDS
GGAGACCAAAATCCAATACA+TGG 0.605524 7_3:-87475903 None:intergenic
AATCCAACCTCCAATTGTGA+TGG 0.614141 7_3:-87475580 None:intergenic
TGATGTTGGCAAGGTTGACA+GGG 0.615810 7_3:+87475533 Msa1133740:CDS
GTTCTGAGCGAGGAGTTGGT+TGG 0.616099 7_3:+87474965 Msa1133740:CDS
TGTAGCGTAGATTGAGATGG+GGG 0.617513 7_3:+87475797 Msa1133740:three_prime_UTR
ACCAGCACCTAGCCCAACAA+TGG 0.619549 7_3:-87475248 None:intergenic
ACTGAGGTCTTGAATACCAA+AGG 0.620635 7_3:-87475463 None:intergenic
ATTGCTGAATGGTCTCACTT+GGG 0.621562 7_3:+87475360 Msa1133740:CDS
CAAATGGGTTGGTCAGTACG+AGG 0.622120 7_3:+87475290 Msa1133740:CDS
AGACCATTCAGCAATGTAGG+TGG 0.628094 7_3:-87475352 None:intergenic
CTTGAAAGGAAACTGTGGAT+CGG 0.632655 7_3:-87474942 None:intergenic
AGAACCTTGAAAGGAAACTG+TGG 0.643443 7_3:-87474947 None:intergenic
ATAGAACAATTATGAAACTG+AGG 0.657815 7_3:-87474731 None:intergenic
GCATGACTCTGACCAAATGG+AGG 0.663317 7_3:-87474677 None:intergenic
ATGTAGCGTAGATTGAGATG+GGG 0.668752 7_3:+87475796 Msa1133740:three_prime_UTR
TTTGACTATTGCATTGACCA+AGG 0.674682 7_3:+87475688 Msa1133740:three_prime_UTR
TGTGCGAACAATGTTCTTGG+GGG 0.675514 7_3:+87475499 Msa1133740:CDS
GGTGGAGATGGAAATTCGGG+AGG 0.679926 7_3:+87474842 Msa1133740:CDS
ACACCTGAGAACCACAACTG+AGG 0.691783 7_3:-87475479 None:intergenic
TACCTGATTCTAGAACAGCA+AGG 0.723306 7_3:-87474429 None:intergenic
CAGGTACCAAACTCTCAATG+GGG 0.736143 7_3:+87475411 Msa1133740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCCTCATAAATTTTATTTTT+GGG + chr7_3:87474374-87474393 Msa1133740:intron 15.0%
!!! AAATATCAAATTTTTGAAAC+AGG - chr7_3:87474478-87474497 None:intergenic 15.0%
!!! TCCTCATAAATTTTATTTTT+GGG + chr7_3:87474374-87474393 Msa1133740:intron 15.0%
!!! AAATATCAAATTTTTGAAAC+AGG - chr7_3:87474478-87474497 None:intergenic 15.0%
!!! TAACACACATTCAATTTTTT+AGG + chr7_3:87474337-87474356 Msa1133740:intron 20.0%
!!! AACACACATTCAATTTTTTA+GGG + chr7_3:87474338-87474357 Msa1133740:intron 20.0%
!!! CTCCTCATAAATTTTATTTT+TGG + chr7_3:87474373-87474392 Msa1133740:intron 20.0%
!! ACCCAAAAATAAAATTTATG+AGG - chr7_3:87474378-87474397 None:intergenic 20.0%
!!! TTTCTTTTACTTTCATTTTC+AGG + chr7_3:87474401-87474420 Msa1133740:intron 20.0%
!!! AGTTATGCTTTATTTATGAA+TGG + chr7_3:87474556-87474575 Msa1133740:intron 20.0%
!!! GTTATGCTTTATTTATGAAT+GGG + chr7_3:87474557-87474576 Msa1133740:intron 20.0%
!! AATACATGGTTATACTAATT+TGG - chr7_3:87475892-87475911 None:intergenic 20.0%
!! AAATTAGTATAACCATGTAT+TGG + chr7_3:87475891-87475910 Msa1133740:three_prime_UTR 20.0%
!!! AGTTTTGGTTATATAAAATG+AGG + chr7_3:87476055-87476074 Msa1133740:three_prime_UTR 20.0%
!!! TAACACACATTCAATTTTTT+AGG + chr7_3:87474337-87474356 Msa1133740:intron 20.0%
!!! AACACACATTCAATTTTTTA+GGG + chr7_3:87474338-87474357 Msa1133740:intron 20.0%
!!! CTCCTCATAAATTTTATTTT+TGG + chr7_3:87474373-87474392 Msa1133740:intron 20.0%
!! ACCCAAAAATAAAATTTATG+AGG - chr7_3:87474378-87474397 None:intergenic 20.0%
!!! TTTCTTTTACTTTCATTTTC+AGG + chr7_3:87474401-87474420 Msa1133740:intron 20.0%
!!! AGTTATGCTTTATTTATGAA+TGG + chr7_3:87474556-87474575 Msa1133740:intron 20.0%
!!! GTTATGCTTTATTTATGAAT+GGG + chr7_3:87474557-87474576 Msa1133740:intron 20.0%
!! AATACATGGTTATACTAATT+TGG - chr7_3:87475892-87475911 None:intergenic 20.0%
!! AAATTAGTATAACCATGTAT+TGG + chr7_3:87475891-87475910 Msa1133740:three_prime_UTR 20.0%
!!! TGAATAATGATTTGTTGCTA+TGG + chr7_3:87474531-87474550 Msa1133740:intron 25.0%
! ATAGAACAATTATGAAACTG+AGG - chr7_3:87474734-87474753 None:intergenic 25.0%
!!! TGATTCATCTTTTGGAATTT+TGG + chr7_3:87474883-87474902 Msa1133740:CDS 25.0%
!!! GATTCATCTTTTGGAATTTT+GGG + chr7_3:87474884-87474903 Msa1133740:CDS 25.0%
! AAACCTATCCAATAAACTAT+AGG - chr7_3:87475197-87475216 None:intergenic 25.0%
! TATAGTTTATTGGATAGGTT+TGG + chr7_3:87475196-87475215 Msa1133740:CDS 25.0%
!! TATAACCATGTATTGGATTT+TGG + chr7_3:87475898-87475917 Msa1133740:three_prime_UTR 25.0%
!! TAGCCAAAATGTTTTCATTT+GGG - chr7_3:87475938-87475957 None:intergenic 25.0%
!! ATAGCCAAAATGTTTTCATT+TGG - chr7_3:87475939-87475958 None:intergenic 25.0%
!! GACACTTTTACAATGATAAT+TGG - chr7_3:87476019-87476038 None:intergenic 25.0%
!!! TGAATAATGATTTGTTGCTA+TGG + chr7_3:87474531-87474550 Msa1133740:intron 25.0%
! ATAGAACAATTATGAAACTG+AGG - chr7_3:87474734-87474753 None:intergenic 25.0%
!!! TGATTCATCTTTTGGAATTT+TGG + chr7_3:87474883-87474902 Msa1133740:CDS 25.0%
!!! GATTCATCTTTTGGAATTTT+GGG + chr7_3:87474884-87474903 Msa1133740:CDS 25.0%
! AAACCTATCCAATAAACTAT+AGG - chr7_3:87475197-87475216 None:intergenic 25.0%
! TATAGTTTATTGGATAGGTT+TGG + chr7_3:87475196-87475215 Msa1133740:CDS 25.0%
!! TATAACCATGTATTGGATTT+TGG + chr7_3:87475898-87475917 Msa1133740:three_prime_UTR 25.0%
!! TAGCCAAAATGTTTTCATTT+GGG - chr7_3:87475938-87475957 None:intergenic 25.0%
!! ATAGCCAAAATGTTTTCATT+TGG - chr7_3:87475939-87475958 None:intergenic 25.0%
!! GACACTTTTACAATGATAAT+TGG - chr7_3:87476019-87476038 None:intergenic 25.0%
CAGGTGAAACAAAATATCTT+TGG + chr7_3:87474141-87474160 Msa1133740:intron 30.0%
GTGTGTTATATAGTAGTGTA+GGG - chr7_3:87474325-87474344 None:intergenic 30.0%
TGTGTGTTATATAGTAGTGT+AGG - chr7_3:87474326-87474345 None:intergenic 30.0%
TTATTTATGAATGGGTGATG+TGG + chr7_3:87474565-87474584 Msa1133740:intron 30.0%
TATTTATGAATGGGTGATGT+GGG + chr7_3:87474566-87474585 Msa1133740:intron 30.0%
! TTGCTTTGTTACAGATCAAA+TGG + chr7_3:87474628-87474647 Msa1133740:intron 30.0%
TACAGATCAAATGGAAACTA+TGG + chr7_3:87474637-87474656 Msa1133740:intron 30.0%
AGTTCATTCAACCCAAAATT+AGG - chr7_3:87475028-87475047 None:intergenic 30.0%
!!! GTTTTTTCAACTCTTGTTGT+TGG + chr7_3:87475055-87475074 Msa1133740:CDS 30.0%
! TTTTACACTCATGTATCTGT+TGG + chr7_3:87475090-87475109 Msa1133740:CDS 30.0%
! TTTGGAACTTTGGTGTATAA+AGG + chr7_3:87475214-87475233 Msa1133740:CDS 30.0%
!!! GAACTATTTTTGCCATTGTT+GGG + chr7_3:87475236-87475255 Msa1133740:CDS 30.0%
! CAAAATGTTTTCATTTGGGA+AGG - chr7_3:87475934-87475953 None:intergenic 30.0%
! CTTCCCAAATGAAAACATTT+TGG + chr7_3:87475932-87475951 Msa1133740:three_prime_UTR 30.0%
! GTTTTTCGTTTCTGCTTTAT+TGG + chr7_3:87475968-87475987 Msa1133740:three_prime_UTR 30.0%
! AAGTGTCACAAATCTTTTTG+CGG + chr7_3:87476032-87476051 Msa1133740:three_prime_UTR 30.0%
CAGGTGAAACAAAATATCTT+TGG + chr7_3:87474141-87474160 Msa1133740:intron 30.0%
GTGTGTTATATAGTAGTGTA+GGG - chr7_3:87474325-87474344 None:intergenic 30.0%
TGTGTGTTATATAGTAGTGT+AGG - chr7_3:87474326-87474345 None:intergenic 30.0%
TTATTTATGAATGGGTGATG+TGG + chr7_3:87474565-87474584 Msa1133740:intron 30.0%
TATTTATGAATGGGTGATGT+GGG + chr7_3:87474566-87474585 Msa1133740:intron 30.0%
! TTGCTTTGTTACAGATCAAA+TGG + chr7_3:87474628-87474647 Msa1133740:intron 30.0%
TACAGATCAAATGGAAACTA+TGG + chr7_3:87474637-87474656 Msa1133740:intron 30.0%
AGTTCATTCAACCCAAAATT+AGG - chr7_3:87475028-87475047 None:intergenic 30.0%
!!! GTTTTTTCAACTCTTGTTGT+TGG + chr7_3:87475055-87475074 Msa1133740:CDS 30.0%
! TTTTACACTCATGTATCTGT+TGG + chr7_3:87475090-87475109 Msa1133740:CDS 30.0%
! TTTGGAACTTTGGTGTATAA+AGG + chr7_3:87475214-87475233 Msa1133740:CDS 30.0%
!!! GAACTATTTTTGCCATTGTT+GGG + chr7_3:87475236-87475255 Msa1133740:CDS 30.0%
! CAAAATGTTTTCATTTGGGA+AGG - chr7_3:87475934-87475953 None:intergenic 30.0%
! CTTCCCAAATGAAAACATTT+TGG + chr7_3:87475932-87475951 Msa1133740:three_prime_UTR 30.0%
! GTTTTTCGTTTCTGCTTTAT+TGG + chr7_3:87475968-87475987 Msa1133740:three_prime_UTR 30.0%
! AAGTGTCACAAATCTTTTTG+CGG + chr7_3:87476032-87476051 Msa1133740:three_prime_UTR 30.0%
ATCTGATCCTCACATAACTA+TGG - chr7_3:87474211-87474230 None:intergenic 35.0%
GATGATGAATGTGACAAACA+TGG - chr7_3:87474261-87474280 None:intergenic 35.0%
TCAACATGGTGTTCATCTAT+TGG - chr7_3:87474293-87474312 None:intergenic 35.0%
TAGGGTGTAGAAAATCAACA+TGG - chr7_3:87474307-87474326 None:intergenic 35.0%
CAATTATGAAACTGAGGTTG+CGG - chr7_3:87474728-87474747 None:intergenic 35.0%
!! TTTCAACCTTTGAGGCAAAT+GGG - chr7_3:87474774-87474793 None:intergenic 35.0%
AAGCTAAGTTTCAACCTTTG+AGG - chr7_3:87474782-87474801 None:intergenic 35.0%
!! AGGTTGAAACTTAGCTTTGT+TGG + chr7_3:87474785-87474804 Msa1133740:CDS 35.0%
!! TTGAAACTTAGCTTTGTTGG+AGG + chr7_3:87474788-87474807 Msa1133740:CDS 35.0%
!! TGAAACTTAGCTTTGTTGGA+GGG + chr7_3:87474789-87474808 Msa1133740:CDS 35.0%
! AAGTCAGGTGATTCATCTTT+TGG + chr7_3:87474875-87474894 Msa1133740:CDS 35.0%
!! ATTTTGGGTACGTTTCTGAA+TGG + chr7_3:87474899-87474918 Msa1133740:CDS 35.0%
GTGCCTATAGTTTATTGGAT+AGG + chr7_3:87475191-87475210 Msa1133740:CDS 35.0%
! ATTGGATAGGTTTGGAACTT+TGG + chr7_3:87475204-87475223 Msa1133740:CDS 35.0%
!!! GGAACTATTTTTGCCATTGT+TGG + chr7_3:87475235-87475254 Msa1133740:CDS 35.0%
TTGGAACAGCACTTTCAAAT+GGG + chr7_3:87475275-87475294 Msa1133740:CDS 35.0%
AGAAGGTTGAAAGGTAAAAG+AGG + chr7_3:87475608-87475627 Msa1133740:exon 35.0%
TTGAAAGGTAAAAGAGGCTT+TGG + chr7_3:87475614-87475633 Msa1133740:exon 35.0%
! TTTGACTATTGCATTGACCA+AGG + chr7_3:87475688-87475707 Msa1133740:three_prime_UTR 35.0%
TATGTAGCGTAGATTGAGAT+GGG + chr7_3:87475795-87475814 Msa1133740:three_prime_UTR 35.0%
!! ATTTGGAATAAGTTTCTGGC+TGG + chr7_3:87475820-87475839 Msa1133740:three_prime_UTR 35.0%
!! ACGTTAATGTTTCAGGTTGT+AGG - chr7_3:87475868-87475887 None:intergenic 35.0%
ATTTGGCACGTTAATGTTTC+AGG - chr7_3:87475875-87475894 None:intergenic 35.0%
! TTTTCATTTGGGAAGGTAGT+TGG - chr7_3:87475927-87475946 None:intergenic 35.0%
! TTCGTTTCTGCTTTATTGGT+AGG + chr7_3:87475972-87475991 Msa1133740:three_prime_UTR 35.0%
! CAAATCTTTTTGCGGAGTTT+TGG + chr7_3:87476040-87476059 Msa1133740:three_prime_UTR 35.0%
ATCTGATCCTCACATAACTA+TGG - chr7_3:87474211-87474230 None:intergenic 35.0%
GATGATGAATGTGACAAACA+TGG - chr7_3:87474261-87474280 None:intergenic 35.0%
TCAACATGGTGTTCATCTAT+TGG - chr7_3:87474293-87474312 None:intergenic 35.0%
TAGGGTGTAGAAAATCAACA+TGG - chr7_3:87474307-87474326 None:intergenic 35.0%
CAATTATGAAACTGAGGTTG+CGG - chr7_3:87474728-87474747 None:intergenic 35.0%
!! TTTCAACCTTTGAGGCAAAT+GGG - chr7_3:87474774-87474793 None:intergenic 35.0%
AAGCTAAGTTTCAACCTTTG+AGG - chr7_3:87474782-87474801 None:intergenic 35.0%
!! AGGTTGAAACTTAGCTTTGT+TGG + chr7_3:87474785-87474804 Msa1133740:CDS 35.0%
!! TTGAAACTTAGCTTTGTTGG+AGG + chr7_3:87474788-87474807 Msa1133740:CDS 35.0%
!! TGAAACTTAGCTTTGTTGGA+GGG + chr7_3:87474789-87474808 Msa1133740:CDS 35.0%
! AAGTCAGGTGATTCATCTTT+TGG + chr7_3:87474875-87474894 Msa1133740:CDS 35.0%
!! ATTTTGGGTACGTTTCTGAA+TGG + chr7_3:87474899-87474918 Msa1133740:CDS 35.0%
GTGCCTATAGTTTATTGGAT+AGG + chr7_3:87475191-87475210 Msa1133740:CDS 35.0%
! ATTGGATAGGTTTGGAACTT+TGG + chr7_3:87475204-87475223 Msa1133740:CDS 35.0%
!!! GGAACTATTTTTGCCATTGT+TGG + chr7_3:87475235-87475254 Msa1133740:CDS 35.0%
TTGGAACAGCACTTTCAAAT+GGG + chr7_3:87475275-87475294 Msa1133740:CDS 35.0%
AGAAGGTTGAAAGGTAAAAG+AGG + chr7_3:87475608-87475627 Msa1133740:exon 35.0%
TTGAAAGGTAAAAGAGGCTT+TGG + chr7_3:87475614-87475633 Msa1133740:exon 35.0%
! TTTGACTATTGCATTGACCA+AGG + chr7_3:87475688-87475707 Msa1133740:three_prime_UTR 35.0%
TATGTAGCGTAGATTGAGAT+GGG + chr7_3:87475795-87475814 Msa1133740:three_prime_UTR 35.0%
!! ATTTGGAATAAGTTTCTGGC+TGG + chr7_3:87475820-87475839 Msa1133740:three_prime_UTR 35.0%
!! ACGTTAATGTTTCAGGTTGT+AGG - chr7_3:87475868-87475887 None:intergenic 35.0%
ATTTGGCACGTTAATGTTTC+AGG - chr7_3:87475875-87475894 None:intergenic 35.0%
! TTTTCATTTGGGAAGGTAGT+TGG - chr7_3:87475927-87475946 None:intergenic 35.0%
! TTCGTTTCTGCTTTATTGGT+AGG + chr7_3:87475972-87475991 Msa1133740:three_prime_UTR 35.0%
! CAAATCTTTTTGCGGAGTTT+TGG + chr7_3:87476040-87476059 Msa1133740:three_prime_UTR 35.0%
TATCTTTGGCTGCTACATTG+AGG + chr7_3:87474155-87474174 Msa1133740:intron 40.0%
GGATACACCATAGTTATGTG+AGG + chr7_3:87474201-87474220 Msa1133740:intron 40.0%
GTGAGGATCAGATAATCCAA+AGG + chr7_3:87474218-87474237 Msa1133740:intron 40.0%
CCACAAAAACTTGTAGCCTT+TGG - chr7_3:87474237-87474256 None:intergenic 40.0%
! CCAAAGGCTACAAGTTTTTG+TGG + chr7_3:87474234-87474253 Msa1133740:intron 40.0%
ACATGGTGTTCATCTATTGG+CGG - chr7_3:87474290-87474309 None:intergenic 40.0%
!! TACCTTGCTGTTCTAGAATC+AGG + chr7_3:87474427-87474446 Msa1133740:CDS 40.0%
!! TACCTGATTCTAGAACAGCA+AGG - chr7_3:87474432-87474451 None:intergenic 40.0%
ATGGGTGATGTGGGATTTAT+TGG + chr7_3:87474575-87474594 Msa1133740:intron 40.0%
TGGAGGATTAAAACGCAGAA+GGG - chr7_3:87474663-87474682 None:intergenic 40.0%
ATGGAGGATTAAAACGCAGA+AGG - chr7_3:87474664-87474683 None:intergenic 40.0%
!! CTGCGTTTTAATCCTCCATT+TGG + chr7_3:87474665-87474684 Msa1133740:CDS 40.0%
AACTGAGGTTGCGGAAATAA+TGG - chr7_3:87474719-87474738 None:intergenic 40.0%
!! GTTTCAACCTTTGAGGCAAA+TGG - chr7_3:87474775-87474794 None:intergenic 40.0%
!! GAAACTTAGCTTTGTTGGAG+GGG + chr7_3:87474790-87474809 Msa1133740:CDS 40.0%
TTCTGAATGGTTGGAGATCA+AGG + chr7_3:87474912-87474931 Msa1133740:CDS 40.0%
TCTGAATGGTTGGAGATCAA+GGG + chr7_3:87474913-87474932 Msa1133740:CDS 40.0%
CTTGAAAGGAAACTGTGGAT+CGG - chr7_3:87474945-87474964 None:intergenic 40.0%
AGAACCTTGAAAGGAAACTG+TGG - chr7_3:87474950-87474969 None:intergenic 40.0%
!!! TTCTGCTGTTTTAGGTGACA+TGG + chr7_3:87474994-87475013 Msa1133740:CDS 40.0%
!! TTTTAGGTGACATGGCTACT+AGG + chr7_3:87475002-87475021 Msa1133740:CDS 40.0%
! ATGGCTACTAGGCCTAATTT+TGG + chr7_3:87475013-87475032 Msa1133740:CDS 40.0%
! TGGCTACTAGGCCTAATTTT+GGG + chr7_3:87475014-87475033 Msa1133740:CDS 40.0%
TATCTGTTGGCACCAACATT+GGG + chr7_3:87475103-87475122 Msa1133740:CDS 40.0%
GGTTCAAACATGTGACTCTT+AGG - chr7_3:87475169-87475188 None:intergenic 40.0%
AAGAGTCACATGTTTGAACC+TGG + chr7_3:87475169-87475188 Msa1133740:CDS 40.0%
ACCTGGTGCCTATAGTTTAT+TGG + chr7_3:87475186-87475205 Msa1133740:CDS 40.0%
TCCAATAAACTATAGGCACC+AGG - chr7_3:87475190-87475209 None:intergenic 40.0%
! ATTTTTGCCATTGTTGGGCT+AGG + chr7_3:87475241-87475260 Msa1133740:CDS 40.0%
GTTGGAACAGCACTTTCAAA+TGG + chr7_3:87475274-87475293 Msa1133740:CDS 40.0%
AACAGCACTTTCAAATGGGT+TGG + chr7_3:87475279-87475298 Msa1133740:CDS 40.0%
ATTGCTGAATGGTCTCACTT+GGG + chr7_3:87475360-87475379 Msa1133740:CDS 40.0%
TCAGGTACCAAACTCTCAAT+GGG + chr7_3:87475410-87475429 Msa1133740:CDS 40.0%
!! GGAGAAAGTGCTTAATCCTT+TGG + chr7_3:87475447-87475466 Msa1133740:CDS 40.0%
ACTGAGGTCTTGAATACCAA+AGG - chr7_3:87475466-87475485 None:intergenic 40.0%
! GGGAATGACTTTTGTGATGT+TGG + chr7_3:87475519-87475538 Msa1133740:CDS 40.0%
! TGACTTTTGTGATGTTGGCA+AGG + chr7_3:87475524-87475543 Msa1133740:CDS 40.0%
TGAGAAGAAGCCATCACAAT+TGG + chr7_3:87475570-87475589 Msa1133740:CDS 40.0%
AATCCAACCTCCAATTGTGA+TGG - chr7_3:87475583-87475602 None:intergenic 40.0%
TCACAATTGGAGGTTGGATT+AGG + chr7_3:87475583-87475602 Msa1133740:CDS 40.0%
GATTAGGTGAGAAGGTTGAA+AGG + chr7_3:87475599-87475618 Msa1133740:CDS 40.0%
!! TCGCTTTGTTGGTGTTGTTT+GGG - chr7_3:87475649-87475668 None:intergenic 40.0%
!! ATCGCTTTGTTGGTGTTGTT+TGG - chr7_3:87475650-87475669 None:intergenic 40.0%
GATTGAAGCTATCGCTTTGT+TGG - chr7_3:87475660-87475679 None:intergenic 40.0%
CTGAAAGAGTTTGTCAGAGT+AGG - chr7_3:87475764-87475783 None:intergenic 40.0%
GTATGTAGCGTAGATTGAGA+TGG + chr7_3:87475794-87475813 Msa1133740:three_prime_UTR 40.0%
ATGTAGCGTAGATTGAGATG+GGG + chr7_3:87475796-87475815 Msa1133740:three_prime_UTR 40.0%
! GGGGATTTGGAATAAGTTTC+TGG + chr7_3:87475816-87475835 Msa1133740:three_prime_UTR 40.0%
GGAGACCAAAATCCAATACA+TGG - chr7_3:87475906-87475925 None:intergenic 40.0%
TATCTTTGGCTGCTACATTG+AGG + chr7_3:87474155-87474174 Msa1133740:intron 40.0%
GGATACACCATAGTTATGTG+AGG + chr7_3:87474201-87474220 Msa1133740:intron 40.0%
GTGAGGATCAGATAATCCAA+AGG + chr7_3:87474218-87474237 Msa1133740:intron 40.0%
CCACAAAAACTTGTAGCCTT+TGG - chr7_3:87474237-87474256 None:intergenic 40.0%
! CCAAAGGCTACAAGTTTTTG+TGG + chr7_3:87474234-87474253 Msa1133740:intron 40.0%
ACATGGTGTTCATCTATTGG+CGG - chr7_3:87474290-87474309 None:intergenic 40.0%
!! TACCTTGCTGTTCTAGAATC+AGG + chr7_3:87474427-87474446 Msa1133740:CDS 40.0%
!! TACCTGATTCTAGAACAGCA+AGG - chr7_3:87474432-87474451 None:intergenic 40.0%
ATGGGTGATGTGGGATTTAT+TGG + chr7_3:87474575-87474594 Msa1133740:intron 40.0%
TGGAGGATTAAAACGCAGAA+GGG - chr7_3:87474663-87474682 None:intergenic 40.0%
ATGGAGGATTAAAACGCAGA+AGG - chr7_3:87474664-87474683 None:intergenic 40.0%
!! CTGCGTTTTAATCCTCCATT+TGG + chr7_3:87474665-87474684 Msa1133740:CDS 40.0%
AACTGAGGTTGCGGAAATAA+TGG - chr7_3:87474719-87474738 None:intergenic 40.0%
!! GTTTCAACCTTTGAGGCAAA+TGG - chr7_3:87474775-87474794 None:intergenic 40.0%
!! GAAACTTAGCTTTGTTGGAG+GGG + chr7_3:87474790-87474809 Msa1133740:CDS 40.0%
TTCTGAATGGTTGGAGATCA+AGG + chr7_3:87474912-87474931 Msa1133740:CDS 40.0%
TCTGAATGGTTGGAGATCAA+GGG + chr7_3:87474913-87474932 Msa1133740:CDS 40.0%
CTTGAAAGGAAACTGTGGAT+CGG - chr7_3:87474945-87474964 None:intergenic 40.0%
AGAACCTTGAAAGGAAACTG+TGG - chr7_3:87474950-87474969 None:intergenic 40.0%
!!! TTCTGCTGTTTTAGGTGACA+TGG + chr7_3:87474994-87475013 Msa1133740:CDS 40.0%
!! TTTTAGGTGACATGGCTACT+AGG + chr7_3:87475002-87475021 Msa1133740:CDS 40.0%
! ATGGCTACTAGGCCTAATTT+TGG + chr7_3:87475013-87475032 Msa1133740:CDS 40.0%
! TGGCTACTAGGCCTAATTTT+GGG + chr7_3:87475014-87475033 Msa1133740:CDS 40.0%
TATCTGTTGGCACCAACATT+GGG + chr7_3:87475103-87475122 Msa1133740:CDS 40.0%
GGTTCAAACATGTGACTCTT+AGG - chr7_3:87475169-87475188 None:intergenic 40.0%
AAGAGTCACATGTTTGAACC+TGG + chr7_3:87475169-87475188 Msa1133740:CDS 40.0%
ACCTGGTGCCTATAGTTTAT+TGG + chr7_3:87475186-87475205 Msa1133740:CDS 40.0%
TCCAATAAACTATAGGCACC+AGG - chr7_3:87475190-87475209 None:intergenic 40.0%
! ATTTTTGCCATTGTTGGGCT+AGG + chr7_3:87475241-87475260 Msa1133740:CDS 40.0%
GTTGGAACAGCACTTTCAAA+TGG + chr7_3:87475274-87475293 Msa1133740:CDS 40.0%
AACAGCACTTTCAAATGGGT+TGG + chr7_3:87475279-87475298 Msa1133740:CDS 40.0%
ATTGCTGAATGGTCTCACTT+GGG + chr7_3:87475360-87475379 Msa1133740:CDS 40.0%
TCAGGTACCAAACTCTCAAT+GGG + chr7_3:87475410-87475429 Msa1133740:CDS 40.0%
!! GGAGAAAGTGCTTAATCCTT+TGG + chr7_3:87475447-87475466 Msa1133740:CDS 40.0%
ACTGAGGTCTTGAATACCAA+AGG - chr7_3:87475466-87475485 None:intergenic 40.0%
! GGGAATGACTTTTGTGATGT+TGG + chr7_3:87475519-87475538 Msa1133740:CDS 40.0%
! TGACTTTTGTGATGTTGGCA+AGG + chr7_3:87475524-87475543 Msa1133740:CDS 40.0%
TGAGAAGAAGCCATCACAAT+TGG + chr7_3:87475570-87475589 Msa1133740:CDS 40.0%
AATCCAACCTCCAATTGTGA+TGG - chr7_3:87475583-87475602 None:intergenic 40.0%
TCACAATTGGAGGTTGGATT+AGG + chr7_3:87475583-87475602 Msa1133740:CDS 40.0%
GATTAGGTGAGAAGGTTGAA+AGG + chr7_3:87475599-87475618 Msa1133740:CDS 40.0%
!! TCGCTTTGTTGGTGTTGTTT+GGG - chr7_3:87475649-87475668 None:intergenic 40.0%
!! ATCGCTTTGTTGGTGTTGTT+TGG - chr7_3:87475650-87475669 None:intergenic 40.0%
GATTGAAGCTATCGCTTTGT+TGG - chr7_3:87475660-87475679 None:intergenic 40.0%
CTGAAAGAGTTTGTCAGAGT+AGG - chr7_3:87475764-87475783 None:intergenic 40.0%
GTATGTAGCGTAGATTGAGA+TGG + chr7_3:87475794-87475813 Msa1133740:three_prime_UTR 40.0%
ATGTAGCGTAGATTGAGATG+GGG + chr7_3:87475796-87475815 Msa1133740:three_prime_UTR 40.0%
! GGGGATTTGGAATAAGTTTC+TGG + chr7_3:87475816-87475835 Msa1133740:three_prime_UTR 40.0%
GGAGACCAAAATCCAATACA+TGG - chr7_3:87475906-87475925 None:intergenic 40.0%
TTTGGCTGCTACATTGAGGA+AGG + chr7_3:87474159-87474178 Msa1133740:intron 45.0%
GAAGGAGAACGAATCTGCTA+TGG + chr7_3:87474177-87474196 Msa1133740:intron 45.0%
AGTGCATGACTCTGACCAAA+TGG - chr7_3:87474683-87474702 None:intergenic 45.0%
!! TTGAGGCAAATGGGTTGGTT+TGG - chr7_3:87474765-87474784 None:intergenic 45.0%
AACCAACCCATTTGCCTCAA+AGG + chr7_3:87474765-87474784 Msa1133740:CDS 45.0%
!! AACCTTTGAGGCAAATGGGT+TGG - chr7_3:87474770-87474789 None:intergenic 45.0%
!! TGGTGGTGGAGATGGAAATT+CGG + chr7_3:87474838-87474857 Msa1133740:CDS 45.0%
TGGGTACGTTTCTGAATGGT+TGG + chr7_3:87474903-87474922 Msa1133740:CDS 45.0%
CGATCCACAGTTTCCTTTCA+AGG + chr7_3:87474943-87474962 Msa1133740:CDS 45.0%
!!! GGTGTCAGTTCTGCTGTTTT+AGG + chr7_3:87474986-87475005 Msa1133740:CDS 45.0%
GTATCTGTTGGCACCAACAT+TGG + chr7_3:87475102-87475121 Msa1133740:CDS 45.0%
ACTGTAGCAGATCCCAATGT+TGG - chr7_3:87475118-87475137 None:intergenic 45.0%
ATCTGCTACAGTCAAAGTGC+CGG + chr7_3:87475126-87475145 Msa1133740:CDS 45.0%
GGACAAGATGCAAAGATAGC+CGG - chr7_3:87475148-87475167 None:intergenic 45.0%
TTGTTTGGGGACTCAAAGCT+GGG - chr7_3:87475328-87475347 None:intergenic 45.0%
! ATGTAGGTGGAGGCTTGTTT+GGG - chr7_3:87475342-87475361 None:intergenic 45.0%
! AATGTAGGTGGAGGCTTGTT+TGG - chr7_3:87475343-87475362 None:intergenic 45.0%
AGACCATTCAGCAATGTAGG+TGG - chr7_3:87475355-87475374 None:intergenic 45.0%
GTGAGACCATTCAGCAATGT+AGG - chr7_3:87475358-87475377 None:intergenic 45.0%
CATTGCTGAATGGTCTCACT+TGG + chr7_3:87475359-87475378 Msa1133740:CDS 45.0%
CATTGAGAGTTTGGTACCTG+AGG - chr7_3:87475411-87475430 None:intergenic 45.0%
CTCAGGTACCAAACTCTCAA+TGG + chr7_3:87475409-87475428 Msa1133740:CDS 45.0%
CAGGTACCAAACTCTCAATG+GGG + chr7_3:87475411-87475430 Msa1133740:CDS 45.0%
ACTCAACCCCATTGAGAGTT+TGG - chr7_3:87475420-87475439 None:intergenic 45.0%
CAATGGGGTTGAGTTCATGT+TGG + chr7_3:87475426-87475445 Msa1133740:CDS 45.0%
GGTATTCAAGACCTCAGTTG+TGG + chr7_3:87475468-87475487 Msa1133740:CDS 45.0%
AGGTGTGCGAACAATGTTCT+TGG + chr7_3:87475496-87475515 Msa1133740:CDS 45.0%
GGTGTGCGAACAATGTTCTT+GGG + chr7_3:87475497-87475516 Msa1133740:CDS 45.0%
GTGTGCGAACAATGTTCTTG+GGG + chr7_3:87475498-87475517 Msa1133740:CDS 45.0%
TGTGCGAACAATGTTCTTGG+GGG + chr7_3:87475499-87475518 Msa1133740:CDS 45.0%
TGATGTTGGCAAGGTTGACA+GGG + chr7_3:87475533-87475552 Msa1133740:CDS 45.0%
TTGACAGGGTCACAAAATGC+TGG + chr7_3:87475547-87475566 Msa1133740:CDS 45.0%
GAAGAAGCCATCACAATTGG+AGG + chr7_3:87475573-87475592 Msa1133740:CDS 45.0%
AAGCCATCACAATTGGAGGT+TGG + chr7_3:87475577-87475596 Msa1133740:CDS 45.0%
TGTAGCGTAGATTGAGATGG+GGG + chr7_3:87475797-87475816 Msa1133740:three_prime_UTR 45.0%
GTAGATTGAGATGGGGGATT+TGG + chr7_3:87475803-87475822 Msa1133740:three_prime_UTR 45.0%
TTTGGCTGCTACATTGAGGA+AGG + chr7_3:87474159-87474178 Msa1133740:intron 45.0%
GAAGGAGAACGAATCTGCTA+TGG + chr7_3:87474177-87474196 Msa1133740:intron 45.0%
AGTGCATGACTCTGACCAAA+TGG - chr7_3:87474683-87474702 None:intergenic 45.0%
!! TTGAGGCAAATGGGTTGGTT+TGG - chr7_3:87474765-87474784 None:intergenic 45.0%
AACCAACCCATTTGCCTCAA+AGG + chr7_3:87474765-87474784 Msa1133740:CDS 45.0%
!! AACCTTTGAGGCAAATGGGT+TGG - chr7_3:87474770-87474789 None:intergenic 45.0%
!! TGGTGGTGGAGATGGAAATT+CGG + chr7_3:87474838-87474857 Msa1133740:CDS 45.0%
TGGGTACGTTTCTGAATGGT+TGG + chr7_3:87474903-87474922 Msa1133740:CDS 45.0%
CGATCCACAGTTTCCTTTCA+AGG + chr7_3:87474943-87474962 Msa1133740:CDS 45.0%
!!! GGTGTCAGTTCTGCTGTTTT+AGG + chr7_3:87474986-87475005 Msa1133740:CDS 45.0%
GTATCTGTTGGCACCAACAT+TGG + chr7_3:87475102-87475121 Msa1133740:CDS 45.0%
ACTGTAGCAGATCCCAATGT+TGG - chr7_3:87475118-87475137 None:intergenic 45.0%
ATCTGCTACAGTCAAAGTGC+CGG + chr7_3:87475126-87475145 Msa1133740:CDS 45.0%
GGACAAGATGCAAAGATAGC+CGG - chr7_3:87475148-87475167 None:intergenic 45.0%
TTGTTTGGGGACTCAAAGCT+GGG - chr7_3:87475328-87475347 None:intergenic 45.0%
! ATGTAGGTGGAGGCTTGTTT+GGG - chr7_3:87475342-87475361 None:intergenic 45.0%
! AATGTAGGTGGAGGCTTGTT+TGG - chr7_3:87475343-87475362 None:intergenic 45.0%
AGACCATTCAGCAATGTAGG+TGG - chr7_3:87475355-87475374 None:intergenic 45.0%
GTGAGACCATTCAGCAATGT+AGG - chr7_3:87475358-87475377 None:intergenic 45.0%
CATTGCTGAATGGTCTCACT+TGG + chr7_3:87475359-87475378 Msa1133740:CDS 45.0%
CATTGAGAGTTTGGTACCTG+AGG - chr7_3:87475411-87475430 None:intergenic 45.0%
CTCAGGTACCAAACTCTCAA+TGG + chr7_3:87475409-87475428 Msa1133740:CDS 45.0%
CAGGTACCAAACTCTCAATG+GGG + chr7_3:87475411-87475430 Msa1133740:CDS 45.0%
ACTCAACCCCATTGAGAGTT+TGG - chr7_3:87475420-87475439 None:intergenic 45.0%
CAATGGGGTTGAGTTCATGT+TGG + chr7_3:87475426-87475445 Msa1133740:CDS 45.0%
GGTATTCAAGACCTCAGTTG+TGG + chr7_3:87475468-87475487 Msa1133740:CDS 45.0%
AGGTGTGCGAACAATGTTCT+TGG + chr7_3:87475496-87475515 Msa1133740:CDS 45.0%
GGTGTGCGAACAATGTTCTT+GGG + chr7_3:87475497-87475516 Msa1133740:CDS 45.0%
GTGTGCGAACAATGTTCTTG+GGG + chr7_3:87475498-87475517 Msa1133740:CDS 45.0%
TGTGCGAACAATGTTCTTGG+GGG + chr7_3:87475499-87475518 Msa1133740:CDS 45.0%
TGATGTTGGCAAGGTTGACA+GGG + chr7_3:87475533-87475552 Msa1133740:CDS 45.0%
TTGACAGGGTCACAAAATGC+TGG + chr7_3:87475547-87475566 Msa1133740:CDS 45.0%
GAAGAAGCCATCACAATTGG+AGG + chr7_3:87475573-87475592 Msa1133740:CDS 45.0%
AAGCCATCACAATTGGAGGT+TGG + chr7_3:87475577-87475596 Msa1133740:CDS 45.0%
TGTAGCGTAGATTGAGATGG+GGG + chr7_3:87475797-87475816 Msa1133740:three_prime_UTR 45.0%
GTAGATTGAGATGGGGGATT+TGG + chr7_3:87475803-87475822 Msa1133740:three_prime_UTR 45.0%
GGAGAACGAATCTGCTATGG+AGG + chr7_3:87474180-87474199 Msa1133740:intron 50.0%
GCATGACTCTGACCAAATGG+AGG - chr7_3:87474680-87474699 None:intergenic 50.0%
!! CTTAGCTTTGTTGGAGGGGA+TGG + chr7_3:87474794-87474813 Msa1133740:CDS 50.0%
!! GGTGGTGGAGATGGAAATTC+GGG + chr7_3:87474839-87474858 Msa1133740:CDS 50.0%
GGAAATTCGGGAGGTGATGA+TGG + chr7_3:87474851-87474870 Msa1133740:CDS 50.0%
!! GGAGGTGATGATGGAAAGTC+AGG + chr7_3:87474860-87474879 Msa1133740:CDS 50.0%
!! TCCTTTCAAGGTTCTGAGCG+AGG + chr7_3:87474955-87474974 Msa1133740:CDS 50.0%
TCCTCGCTCAGAACCTTGAA+AGG - chr7_3:87474959-87474978 None:intergenic 50.0%
!! CAAATGGGTTGGTCAGTACG+AGG + chr7_3:87475290-87475309 Msa1133740:CDS 50.0%
GGTCAGTACGAGGAAGAAGA+TGG + chr7_3:87475300-87475319 Msa1133740:CDS 50.0%
CTTGTTTGGGGACTCAAAGC+TGG - chr7_3:87475329-87475348 None:intergenic 50.0%
! TGTAGGTGGAGGCTTGTTTG+GGG - chr7_3:87475341-87475360 None:intergenic 50.0%
CCATTCAGCAATGTAGGTGG+AGG - chr7_3:87475352-87475371 None:intergenic 50.0%
CCTCCACCTACATTGCTGAA+TGG + chr7_3:87475349-87475368 Msa1133740:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG + chr7_3:87475372-87475391 Msa1133740:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG + chr7_3:87475373-87475392 Msa1133740:CDS 50.0%
AGACCTCAGTTGTGGTTCTC+AGG + chr7_3:87475476-87475495 Msa1133740:CDS 50.0%
ACACCTGAGAACCACAACTG+AGG - chr7_3:87475482-87475501 None:intergenic 50.0%
GTGATGTTGGCAAGGTTGAC+AGG + chr7_3:87475532-87475551 Msa1133740:CDS 50.0%
! GGAGGTTGGATTAGGTGAGA+AGG + chr7_3:87475591-87475610 Msa1133740:CDS 50.0%
CAAGGTTGTTGTAGAGCTCG+CGG + chr7_3:87475706-87475725 Msa1133740:three_prime_UTR 50.0%
GGAGAACGAATCTGCTATGG+AGG + chr7_3:87474180-87474199 Msa1133740:intron 50.0%
GCATGACTCTGACCAAATGG+AGG - chr7_3:87474680-87474699 None:intergenic 50.0%
!! CTTAGCTTTGTTGGAGGGGA+TGG + chr7_3:87474794-87474813 Msa1133740:CDS 50.0%
!! GGTGGTGGAGATGGAAATTC+GGG + chr7_3:87474839-87474858 Msa1133740:CDS 50.0%
GGAAATTCGGGAGGTGATGA+TGG + chr7_3:87474851-87474870 Msa1133740:CDS 50.0%
!! GGAGGTGATGATGGAAAGTC+AGG + chr7_3:87474860-87474879 Msa1133740:CDS 50.0%
!! TCCTTTCAAGGTTCTGAGCG+AGG + chr7_3:87474955-87474974 Msa1133740:CDS 50.0%
TCCTCGCTCAGAACCTTGAA+AGG - chr7_3:87474959-87474978 None:intergenic 50.0%
!! CAAATGGGTTGGTCAGTACG+AGG + chr7_3:87475290-87475309 Msa1133740:CDS 50.0%
GGTCAGTACGAGGAAGAAGA+TGG + chr7_3:87475300-87475319 Msa1133740:CDS 50.0%
CTTGTTTGGGGACTCAAAGC+TGG - chr7_3:87475329-87475348 None:intergenic 50.0%
! TGTAGGTGGAGGCTTGTTTG+GGG - chr7_3:87475341-87475360 None:intergenic 50.0%
CCATTCAGCAATGTAGGTGG+AGG - chr7_3:87475352-87475371 None:intergenic 50.0%
CCTCCACCTACATTGCTGAA+TGG + chr7_3:87475349-87475368 Msa1133740:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG + chr7_3:87475372-87475391 Msa1133740:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG + chr7_3:87475373-87475392 Msa1133740:CDS 50.0%
AGACCTCAGTTGTGGTTCTC+AGG + chr7_3:87475476-87475495 Msa1133740:CDS 50.0%
ACACCTGAGAACCACAACTG+AGG - chr7_3:87475482-87475501 None:intergenic 50.0%
GTGATGTTGGCAAGGTTGAC+AGG + chr7_3:87475532-87475551 Msa1133740:CDS 50.0%
! GGAGGTTGGATTAGGTGAGA+AGG + chr7_3:87475591-87475610 Msa1133740:CDS 50.0%
CAAGGTTGTTGTAGAGCTCG+CGG + chr7_3:87475706-87475725 Msa1133740:three_prime_UTR 50.0%
!! AGCTTTGTTGGAGGGGATGG+TGG + chr7_3:87474797-87474816 Msa1133740:CDS 55.0%
! TTTGTTGGAGGGGATGGTGG+TGG + chr7_3:87474800-87474819 Msa1133740:CDS 55.0%
! TTGTTGGAGGGGATGGTGGT+GGG + chr7_3:87474801-87474820 Msa1133740:CDS 55.0%
GGTGGAGATGGAAATTCGGG+AGG + chr7_3:87474842-87474861 Msa1133740:CDS 55.0%
!! CAAGGTTCTGAGCGAGGAGT+TGG + chr7_3:87474961-87474980 Msa1133740:CDS 55.0%
! GTTCTGAGCGAGGAGTTGGT+TGG + chr7_3:87474965-87474984 Msa1133740:CDS 55.0%
ACCAGCACCTAGCCCAACAA+TGG - chr7_3:87475251-87475270 None:intergenic 55.0%
TGGGTTTCAGCAGCAACCTC+AGG + chr7_3:87475392-87475411 Msa1133740:CDS 55.0%
CGCGAGCTCTACAACAACCT+TGG - chr7_3:87475708-87475727 None:intergenic 55.0%
!! AGCTTTGTTGGAGGGGATGG+TGG + chr7_3:87474797-87474816 Msa1133740:CDS 55.0%
! TTTGTTGGAGGGGATGGTGG+TGG + chr7_3:87474800-87474819 Msa1133740:CDS 55.0%
! TTGTTGGAGGGGATGGTGGT+GGG + chr7_3:87474801-87474820 Msa1133740:CDS 55.0%
GGTGGAGATGGAAATTCGGG+AGG + chr7_3:87474842-87474861 Msa1133740:CDS 55.0%
!! CAAGGTTCTGAGCGAGGAGT+TGG + chr7_3:87474961-87474980 Msa1133740:CDS 55.0%
! GTTCTGAGCGAGGAGTTGGT+TGG + chr7_3:87474965-87474984 Msa1133740:CDS 55.0%
ACCAGCACCTAGCCCAACAA+TGG - chr7_3:87475251-87475270 None:intergenic 55.0%
TGGGTTTCAGCAGCAACCTC+AGG + chr7_3:87475392-87475411 Msa1133740:CDS 55.0%
CGCGAGCTCTACAACAACCT+TGG - chr7_3:87475708-87475727 None:intergenic 55.0%
! TGTTGGAGGGGATGGTGGTG+GGG + chr7_3:87474802-87474821 Msa1133740:CDS 60.0%
! GCCATTGTTGGGCTAGGTGC+TGG + chr7_3:87475247-87475266 Msa1133740:CDS 60.0%
!! GGGCTAGGTGCTGGTCTTGT+TGG + chr7_3:87475256-87475275 Msa1133740:CDS 60.0%
! TGTTGGAGGGGATGGTGGTG+GGG + chr7_3:87474802-87474821 Msa1133740:CDS 60.0%
! GCCATTGTTGGGCTAGGTGC+TGG + chr7_3:87475247-87475266 Msa1133740:CDS 60.0%
!! GGGCTAGGTGCTGGTCTTGT+TGG + chr7_3:87475256-87475275 Msa1133740:CDS 60.0%
!! GTTGGAGGGGATGGTGGTGG+GGG + chr7_3:87474803-87474822 Msa1133740:CDS 65.0%
!! GGAGTTGGTCGTGGTGGTGG+TGG + chr7_3:87474824-87474843 Msa1133740:CDS 65.0%
!! GGTCGTGGTGGTGGTGGAGA+TGG + chr7_3:87474830-87474849 Msa1133740:CDS 65.0%
!! GTTGGAGGGGATGGTGGTGG+GGG + chr7_3:87474803-87474822 Msa1133740:CDS 65.0%
!! GGAGTTGGTCGTGGTGGTGG+TGG + chr7_3:87474824-87474843 Msa1133740:CDS 65.0%
!! GGTCGTGGTGGTGGTGGAGA+TGG + chr7_3:87474830-87474849 Msa1133740:CDS 65.0%
!! GGGGATGGTGGTGGGGGAGT+TGG + chr7_3:87474809-87474828 Msa1133740:CDS 70.0%
!! GGTGGTGGGGGAGTTGGTCG+TGG + chr7_3:87474815-87474834 Msa1133740:CDS 70.0%
! GGTGGGGGAGTTGGTCGTGG+TGG + chr7_3:87474818-87474837 Msa1133740:CDS 70.0%
! GGGGGAGTTGGTCGTGGTGG+TGG + chr7_3:87474821-87474840 Msa1133740:CDS 70.0%
!! GGGGATGGTGGTGGGGGAGT+TGG + chr7_3:87474809-87474828 Msa1133740:CDS 70.0%
!! GGTGGTGGGGGAGTTGGTCG+TGG + chr7_3:87474815-87474834 Msa1133740:CDS 70.0%
! GGTGGGGGAGTTGGTCGTGG+TGG + chr7_3:87474818-87474837 Msa1133740:CDS 70.0%
! GGGGGAGTTGGTCGTGGTGG+TGG + chr7_3:87474821-87474840 Msa1133740:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 87474136 87476077 87474136 ID=Msa1133740;Name=Msa1133740
chr7_3 mRNA 87474136 87476077 87474136 ID=Msa1133740-mRNA-1;Parent=Msa1133740;Name=Msa1133740-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.5|0.33|0.66|1|1|3|453|338
chr7_3 exon 87474136 87474143 87474136 ID=Msa1133740-mRNA-1:exon:26332;Parent=Msa1133740-mRNA-1
chr7_3 exon 87474423 87474448 87474423 ID=Msa1133740-mRNA-1:exon:26333;Parent=Msa1133740-mRNA-1
chr7_3 exon 87474642 87476077 87474642 ID=Msa1133740-mRNA-1:exon:26334;Parent=Msa1133740-mRNA-1
chr7_3 CDS 87474136 87474143 87474136 ID=Msa1133740-mRNA-1:cds;Parent=Msa1133740-mRNA-1
chr7_3 CDS 87474423 87474448 87474423 ID=Msa1133740-mRNA-1:cds;Parent=Msa1133740-mRNA-1
chr7_3 CDS 87474642 87475624 87474642 ID=Msa1133740-mRNA-1:cds;Parent=Msa1133740-mRNA-1
chr7_3 three_prime_UTR 87475625 87476077 87475625 ID=Msa1133740-mRNA-1:three_prime_utr;Parent=Msa1133740-mRNA-1
Gene Sequence

>Msa1133740

ATGTTCAGGTTTTACCTTGCTGTTCTAGAATCAGATCAAATGGAAACTATGGCCCTTCTGCGTTTTAATCCTCCATTTGGTCAGAGTCATGCACTTTCGTTTTCATTACCATTATTTCCGCAACCTCAGTTTCATAATTGTTCTATATATCTTACCAAACCAACCCATTTGCCTCAAAGGTTGAAACTTAGCTTTGTTGGAGGGGATGGTGGTGGGGGAGTTGGTCGTGGTGGTGGTGGAGATGGAAATTCGGGAGGTGATGATGGAAAGTCAGGTGATTCATCTTTTGGAATTTTGGGTACGTTTCTGAATGGTTGGAGATCAAGGGTTGCTGCCGATCCACAGTTTCCTTTCAAGGTTCTGAGCGAGGAGTTGGTTGGTGTCAGTTCTGCTGTTTTAGGTGACATGGCTACTAGGCCTAATTTTGGGTTGAATGAACTTGACTTTGTTTTTTCAACTCTTGTTGTTGGTGCTATTCTCAATTTTACACTCATGTATCTGTTGGCACCAACATTGGGATCTGCTACAGTCAAAGTGCCGGCTATCTTTGCATCTTGTCCTAAGAGTCACATGTTTGAACCTGGTGCCTATAGTTTATTGGATAGGTTTGGAACTTTGGTGTATAAAGGAACTATTTTTGCCATTGTTGGGCTAGGTGCTGGTCTTGTTGGAACAGCACTTTCAAATGGGTTGGTCAGTACGAGGAAGAAGATGGATCCCAGCTTTGAGTCCCCAAACAAGCCTCCACCTACATTGCTGAATGGTCTCACTTGGGCTGCTCATATGGGTTTCAGCAGCAACCTCAGGTACCAAACTCTCAATGGGGTTGAGTTCATGTTGGAGAAAGTGCTTAATCCTTTGGTATTCAAGACCTCAGTTGTGGTTCTCAGGTGTGCGAACAATGTTCTTGGGGGAATGACTTTTGTGATGTTGGCAAGGTTGACAGGGTCACAAAATGCTGGTGAGAAGAAGCCATCACAATTGGAGGTTGGATTAGGTGAGAAGGTTGAAAGGTAA

Protein sequence

>Msa1133740

MFRFYLAVLESDQMETMALLRFNPPFGQSHALSFSLPLFPQPQFHNCSIYLTKPTHLPQRLKLSFVGGDGGGGVGRGGGGDGNSGGDDGKSGDSSFGILGTFLNGWRSRVAADPQFPFKVLSEELVGVSSAVLGDMATRPNFGLNELDFVFSTLVVGAILNFTLMYLLAPTLGSATVKVPAIFASCPKSHMFEPGAYSLLDRFGTLVYKGTIFAIVGLGAGLVGTALSNGLVSTRKKMDPSFESPNKPPPTLLNGLTWAAHMGFSSNLRYQTLNGVEFMLEKVLNPLVFKTSVVVLRCANNVLGGMTFVMLARLTGSQNAGEKKPSQLEVGLGEKVER*