AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0216790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216790 MtrunA17_Chr2g0318371 92.531 241 16 1 1 241 1 239 2.08e-155 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0216790 AT4G27390.1 67.143 140 44 2 104 241 96 235 3.66e-65 202

Find 74 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAGCACTGCTAGGATTT+TGG 0.190883 2_1:-62983495 Msa0216790:CDS
AGTAAACTTTGGGTCTAAAT+TGG 0.212593 2_1:+62983703 None:intergenic
GACATGGGGAATATTGAATA+TGG 0.226907 2_1:+62983809 None:intergenic
GGAAATCTTGCTCTGGCTGC+TGG 0.232538 2_1:-62983473 Msa0216790:CDS
GTAAAGAATAATAAAGGATT+TGG 0.246820 2_1:-62983551 Msa0216790:CDS
AACCACAGCTTACCAGAAAA+AGG 0.260992 2_1:+62981879 None:intergenic
TGGCAAGTGTTCGTTGGATT+TGG 0.278594 2_1:-62984007 Msa0216790:five_prime_UTR
TGAAAATCATTTCCACAGTT+TGG 0.296271 2_1:+62982063 None:intergenic
ATACCACACCTTTATTATCT+TGG 0.307638 2_1:-62980208 Msa0216790:three_prime_UTR
TTGATGCTATTGTTTCCATT+TGG 0.312053 2_1:-62983409 Msa0216790:CDS
AAAGGATTTGGATTCAATAA+TGG 0.318678 2_1:-62983539 Msa0216790:CDS
TGTCTTGTAGATGTTATCAT+TGG 0.324764 2_1:+62983745 None:intergenic
TCAAACCAATCTACAACATT+TGG 0.326629 2_1:-62981714 Msa0216790:CDS
TGATGCTATTGTTTCCATTT+GGG 0.332028 2_1:-62983408 Msa0216790:intron
TGGGTGTATGTGGGAAGAAA+AGG 0.347214 2_1:-62983603 Msa0216790:CDS
TTTATGGCAGACAAGGATTC+TGG 0.347799 2_1:-62981546 Msa0216790:intron
AGAAGATTGAAGATACGTTT+TGG 0.349225 2_1:+62980181 None:intergenic
TAGGTCTTGGTGCTTTCCTC+TGG 0.355550 2_1:-62982251 Msa0216790:CDS
GTAAAATCTTAGTGTACTAA+TGG 0.358748 2_1:+62983837 Msa0216800:intron
TTCAATAATGGTGGAGGTGG+TGG 0.377303 2_1:-62983527 Msa0216790:CDS
AAATTCTCGTTCAGTTAAAC+AGG 0.393778 2_1:-62980395 Msa0216790:three_prime_UTR
CTGCAATTCTTCATTTAAAG+TGG 0.395830 2_1:+62981923 None:intergenic
CTCTCAATGACTGGACAACT+TGG 0.412515 2_1:-62983440 Msa0216790:CDS
GGTGCTTTCCTCTGGTGGGC+AGG 0.422821 2_1:-62982243 Msa0216790:CDS
AGATGAAAAGAAGTAAACTT+TGG 0.428569 2_1:+62983692 None:intergenic
GTCTTGGTGCTTTCCTCTGG+TGG 0.432604 2_1:-62982248 Msa0216790:CDS
GATGAAAAGAAGTAAACTTT+GGG 0.436479 2_1:+62983693 None:intergenic
GGGTGTATGTGGGAAGAAAA+GGG 0.437123 2_1:-62983602 Msa0216790:CDS
TGTACTAATGGAGTTAGAAA+AGG 0.438306 2_1:+62983849 Msa0216800:intron
GAAATCTTGCTCTGGCTGCT+GGG 0.441542 2_1:-62983472 Msa0216790:CDS
TTGGTAAACCAAGATAATAA+AGG 0.441920 2_1:+62980200 None:intergenic
CAATGACTGGACAACTTGGC+TGG 0.453870 2_1:-62983436 Msa0216790:CDS
CTTGTCCAAATGTTGTAGAT+TGG 0.454288 2_1:+62981709 None:intergenic
TATTCCCACACAGATCTTTG+CGG 0.454686 2_1:-62982289 Msa0216790:intron
GGGAAGAAAAGGGGTGCAAG+AGG 0.465614 2_1:-62983592 Msa0216790:CDS
GTCTTGTAGATGTTATCATT+GGG 0.478996 2_1:+62983746 None:intergenic
TGTGTCAAATATCATCTTTG+AGG 0.485147 2_1:+62983925 Msa0216800:intron
ACATGGGGAATATTGAATAT+GGG 0.494818 2_1:+62983810 None:intergenic
TCTTGGTGCTTTCCTCTGGT+GGG 0.507937 2_1:-62982247 Msa0216790:CDS
GGAGGTGGTGGAAGAGATGA+TGG 0.511206 2_1:-62983515 Msa0216790:CDS
GAATTGTACAAGAGTGGACA+TGG 0.518570 2_1:+62983793 None:intergenic
AGTTGAGAGCATGCAGGGAG+AGG 0.519424 2_1:-62983658 Msa0216790:CDS
GGAAGAAAAGGGGTGCAAGA+GGG 0.529776 2_1:-62983591 Msa0216790:CDS
TTAGTACCGATAGTAGGTCT+TGG 0.531029 2_1:-62982264 Msa0216790:CDS
TCGTTCAGTTAAACAGGCCG+TGG 0.531598 2_1:-62980389 Msa0216790:three_prime_UTR
TTGACTTATCTCTCAATGAC+TGG 0.532435 2_1:-62983449 Msa0216790:CDS
GTGCAAGAGGGAAAAGAGAG+TGG 0.534510 2_1:-62983579 Msa0216790:CDS
GGATTTGGATTCAATAATGG+TGG 0.539358 2_1:-62983536 Msa0216790:CDS
GTTTCAAGTTGAGAGCATGC+AGG 0.540331 2_1:-62983664 Msa0216790:CDS
CCAACGAACACTTGCCACGT+TGG 0.541691 2_1:+62984013 Msa0216800:intron
GGATTCAATAATGGTGGAGG+TGG 0.547149 2_1:-62983530 Msa0216790:CDS
CCAACGTGGCAAGTGTTCGT+TGG 0.553138 2_1:-62984013 Msa0216790:five_prime_UTR
TAATGTATTCTAGAGAGGAT+AGG 0.561442 2_1:-62980296 Msa0216790:three_prime_UTR
TTTGGATTCAATAATGGTGG+AGG 0.562087 2_1:-62983533 Msa0216790:CDS
ACTCGTTGCGTCTTAAGCAC+CGG 0.567742 2_1:+62980356 None:intergenic
GATAGAGAATTGTACAAGAG+TGG 0.568164 2_1:+62983787 None:intergenic
GCGGTGTTAGTACCGATAGT+AGG 0.572577 2_1:-62982270 Msa0216790:CDS
TTGGAAAGAACAACATGTGA+AGG 0.580650 2_1:-62983988 Msa0216790:five_prime_UTR
TTTCAAGTTGAGAGCATGCA+GGG 0.582105 2_1:-62983663 Msa0216790:CDS
GAGATGATGGTAGCACTGCT+AGG 0.582418 2_1:-62983502 Msa0216790:CDS
CAGATTAATGTATTCTAGAG+AGG 0.585509 2_1:-62980301 Msa0216790:three_prime_UTR
GGTGTATGTGGGAAGAAAAG+GGG 0.588360 2_1:-62983601 Msa0216790:CDS
TGATGGTAATGAGTTTGTCA+AGG 0.603814 2_1:-62981751 Msa0216790:CDS
AAAGGTTTAGACATGTCGAA+TGG 0.612318 2_1:+62983867 Msa0216800:intron
GCACCGGAAAATGCAAGCCA+CGG 0.623612 2_1:+62980372 None:intergenic
GTTAATTATACTTACTAACA+TGG 0.625795 2_1:+62981462 None:intergenic
TATATGCAGTGTCCAAACTG+TGG 0.630144 2_1:-62982075 Msa0216790:intron
AAACCAAGATAATAAAGGTG+TGG 0.634068 2_1:+62980205 None:intergenic
GCAGGTCGAGATATAATGAA+AGG 0.637002 2_1:-62982225 Msa0216790:CDS
TATCTCGACCTGCCCACCAG+AGG 0.654751 2_1:+62982235 None:intergenic
AATTGTACAAGAGTGGACAT+GGG 0.658045 2_1:+62983794 None:intergenic
ATTGTACAAGAGTGGACATG+GGG 0.667546 2_1:+62983795 None:intergenic
AAAGCACCAAGACCTACTAT+CGG 0.670888 2_1:+62982258 None:intergenic
AAGGGTCCTTAAAACCAACG+TGG 0.803231 2_1:-62984027 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTTAAATTTATTTTAAT+GGG + chr2_1:62981118-62981137 None:intergenic 10.0%
!!! TATCGTTAAATTTATTTTAA+TGG + chr2_1:62981119-62981138 None:intergenic 10.0%
!! TATATAAATTCTACATTATT+AGG - chr2_1:62981663-62981682 Msa0216790:intron 10.0%
!!! CTAGTTTTTTTTTTTTTTTT+TGG - chr2_1:62982729-62982748 Msa0216790:intron 10.0%
!!! GTTTTAGTAAAGAATAATAA+AGG - chr2_1:62980612-62980631 Msa0216790:intron 15.0%
!!! TCGTTAAATTTATTTTAATG+GGG + chr2_1:62981117-62981136 None:intergenic 15.0%
!! AAAAATTATTTACATTGAAC+AGG + chr2_1:62981747-62981766 None:intergenic 15.0%
!! TAATAAAGAATAAAGAGATA+AGG + chr2_1:62982563-62982582 None:intergenic 15.0%
!!! TCAAGATATTTTTTTCTTTT+GGG - chr2_1:62983358-62983377 Msa0216790:intron 15.0%
!!! AGATTTGTATTTAATTTTTC+AGG - chr2_1:62983735-62983754 Msa0216790:CDS 15.0%
!!! GATTTGTATTTAATTTTTCA+GGG - chr2_1:62983736-62983755 Msa0216790:CDS 15.0%
!! GTAAAGAATAATAAAGGATT+TGG - chr2_1:62980618-62980637 Msa0216790:intron 20.0%
!! GTTAAACCATTATAAATACA+AGG - chr2_1:62981012-62981031 Msa0216790:intron 20.0%
!!! TCTTTAAAGTGAATAAGTAA+AGG + chr2_1:62981148-62981167 None:intergenic 20.0%
!!! TTTCTTAAATTATGTTTTCC+CGG - chr2_1:62981176-62981195 Msa0216790:intron 20.0%
!! TAGAAAACATTATCAACTAA+GGG + chr2_1:62981789-62981808 None:intergenic 20.0%
!!! GAATTTACATGTATAAGTTT+TGG + chr2_1:62981829-62981848 None:intergenic 20.0%
!! TTATACGTATAAAATAACGA+TGG + chr2_1:62982211-62982230 None:intergenic 20.0%
!!! TTTATTTTGATATCAGTTGA+TGG - chr2_1:62982401-62982420 Msa0216790:intron 20.0%
!! GTTAATTATACTTACTAACA+TGG + chr2_1:62982710-62982729 None:intergenic 20.0%
!! TTTACTTTAGTGTCAATTAT+AGG + chr2_1:62983228-62983247 None:intergenic 20.0%
!!! ACAATTTTATTGGCTTAAAA+GGG + chr2_1:62983279-62983298 None:intergenic 20.0%
!!! AACAATTTTATTGGCTTAAA+AGG + chr2_1:62983280-62983299 None:intergenic 20.0%
!! TTTAAGCCAATAAAATTGTT+TGG - chr2_1:62983280-62983299 Msa0216790:intron 20.0%
!!! CTCAAGATATTTTTTTCTTT+TGG - chr2_1:62983357-62983376 Msa0216790:intron 20.0%
!!! CAAGATATTTTTTTCTTTTG+GGG - chr2_1:62983359-62983378 Msa0216790:intron 20.0%
!!! AATATATTTGCTGAATACTA+AGG + chr2_1:62983654-62983673 None:intergenic 20.0%
!! ATCTCAATAAAACTATTTAG+TGG + chr2_1:62983719-62983738 None:intergenic 20.0%
!! TTACAAAAAACAATACTTGT+GGG - chr2_1:62984018-62984037 Msa0216790:five_prime_UTR 20.0%
! GTAAAATCTTAGTGTACTAA+TGG + chr2_1:62980335-62980354 None:intergenic 25.0%
! AAATTGGAGAAAGAAAAAGT+GGG + chr2_1:62980453-62980472 None:intergenic 25.0%
! TAAATTGGAGAAAGAAAAAG+TGG + chr2_1:62980454-62980473 None:intergenic 25.0%
! GATGAAAAGAAGTAAACTTT+GGG + chr2_1:62980479-62980498 None:intergenic 25.0%
! AGATGAAAAGAAGTAAACTT+TGG + chr2_1:62980480-62980499 None:intergenic 25.0%
!! AAAGTTTACTTCTTTTCATC+TGG - chr2_1:62980479-62980498 Msa0216790:intron 25.0%
!! AAGTTTACTTCTTTTCATCT+GGG - chr2_1:62980480-62980499 Msa0216790:intron 25.0%
! TATTTAAAAATGGGTGTATG+TGG - chr2_1:62980556-62980575 Msa0216790:intron 25.0%
! ATTTAAAAATGGGTGTATGT+GGG - chr2_1:62980557-62980576 Msa0216790:intron 25.0%
! AAAGGATTTGGATTCAATAA+TGG - chr2_1:62980630-62980649 Msa0216790:intron 25.0%
! AAAAGGTAAACCTATTTGAT+TGG + chr2_1:62981456-62981475 None:intergenic 25.0%
! ATTCTACAAGGAGTTTAAAA+AGG + chr2_1:62981473-62981492 None:intergenic 25.0%
! TAGATAGGTTATGTGAAATT+TGG + chr2_1:62981546-62981565 None:intergenic 25.0%
! CTAGAAAACATTATCAACTA+AGG + chr2_1:62981790-62981809 None:intergenic 25.0%
!!! TTTACATGTATAAGTTTTGG+AGG + chr2_1:62981826-62981845 None:intergenic 25.0%
!!! CTTTTACACTTTTTAAACGA+TGG - chr2_1:62982018-62982037 Msa0216790:intron 25.0%
!!! TTTTTTAAACGAAACACTGA+TGG + chr2_1:62982343-62982362 None:intergenic 25.0%
!! AATGTACTAATAACTTGTGA+AGG + chr2_1:62982520-62982539 None:intergenic 25.0%
! CTTCAATATTATGTTTGCAT+AGG + chr2_1:62982855-62982874 None:intergenic 25.0%
! ATGCAAACATAATATTGAAG+AGG - chr2_1:62982855-62982874 Msa0216790:intron 25.0%
! TGAACAAATACTTGAAAACA+AGG - chr2_1:62982914-62982933 Msa0216790:intron 25.0%
! TAGCCGAAGAATATATTAAT+GGG - chr2_1:62983305-62983324 Msa0216790:intron 25.0%
! TACCCCATTAATATATTCTT+CGG + chr2_1:62983311-62983330 None:intergenic 25.0%
!! TTCTTCATAACTGATTTCAT+AGG + chr2_1:62983503-62983522 None:intergenic 25.0%
! AATGGTTAGGTTAATTATAC+AGG + chr2_1:62983605-62983624 None:intergenic 25.0%
! GTATAATTAACCTAACCATT+TGG - chr2_1:62983605-62983624 Msa0216790:CDS 25.0%
! GTATTCAGCAAATATATTGT+TGG - chr2_1:62983656-62983675 Msa0216790:CDS 25.0%
! TTGGTAAACCAAGATAATAA+AGG + chr2_1:62983972-62983991 Msa0216800:intron 25.0%
! GTTACAAAAAACAATACTTG+TGG - chr2_1:62984017-62984036 Msa0216790:five_prime_UTR 25.0%
TGTGTCAAATATCATCTTTG+AGG + chr2_1:62980247-62980266 None:intergenic 30.0%
TGTACTAATGGAGTTAGAAA+AGG + chr2_1:62980323-62980342 None:intergenic 30.0%
ACATGGGGAATATTGAATAT+GGG + chr2_1:62980362-62980381 None:intergenic 30.0%
GTCTTGTAGATGTTATCATT+GGG + chr2_1:62980426-62980445 None:intergenic 30.0%
TGTCTTGTAGATGTTATCAT+TGG + chr2_1:62980427-62980446 None:intergenic 30.0%
AGTAAACTTTGGGTCTAAAT+TGG + chr2_1:62980469-62980488 None:intergenic 30.0%
TTGATGCTATTGTTTCCATT+TGG - chr2_1:62980760-62980779 Msa0216790:intron 30.0%
TGATGCTATTGTTTCCATTT+GGG - chr2_1:62980761-62980780 Msa0216790:intron 30.0%
CACACACCTTGTATTTATAA+TGG + chr2_1:62981021-62981040 None:intergenic 30.0%
! ATGTGTAAAGCATTTACAAG+AGG + chr2_1:62981208-62981227 None:intergenic 30.0%
GTTGCTACCTCTTAAAATTT+AGG + chr2_1:62981339-62981358 None:intergenic 30.0%
CAATTATGAGCCAATCAAAT+AGG - chr2_1:62981443-62981462 Msa0216790:intron 30.0%
ATTAGAAGAATGTTGCAATC+AGG + chr2_1:62981506-62981525 None:intergenic 30.0%
TGTTTCTTGCTTCTTTAGAT+AGG + chr2_1:62981561-62981580 None:intergenic 30.0%
ACTGAATAAAGATTAAGCGA+AGG - chr2_1:62981601-62981620 Msa0216790:intron 30.0%
CTACATTATTAGGCTATTTG+TGG - chr2_1:62981673-62981692 Msa0216790:intron 30.0%
!!! ACGATGGATTATTTTTCTTG+TGG - chr2_1:62982034-62982053 Msa0216790:intron 30.0%
TGAAAATCATTTCCACAGTT+TGG + chr2_1:62982109-62982128 None:intergenic 30.0%
! AAACTGTGGAAATGATTTTC+AGG - chr2_1:62982108-62982127 Msa0216790:intron 30.0%
CTGCAATTCTTCATTTAAAG+TGG + chr2_1:62982249-62982268 None:intergenic 30.0%
!! GATTGGTTTGAAAAATTCAC+AGG + chr2_1:62982446-62982465 None:intergenic 30.0%
TCAAACCAATCTACAACATT+TGG - chr2_1:62982455-62982474 Msa0216790:intron 30.0%
!! AATTTCTCGCGTTCTAAAAA+TGG - chr2_1:62982491-62982510 Msa0216790:intron 30.0%
TTATCCCTTATCTTTGTTGA+TGG - chr2_1:62982580-62982599 Msa0216790:intron 30.0%
!! TCAATCTGCGTCTTTTATTT+CGG + chr2_1:62982669-62982688 None:intergenic 30.0%
TGGCAATATGTAATTGTGTA+TGG - chr2_1:62982749-62982768 Msa0216790:intron 30.0%
! TTGCAATTCAGTGAAAGTAT+TGG + chr2_1:62982780-62982799 None:intergenic 30.0%
! AAGCTAACACAATTTTTACG+AGG - chr2_1:62983072-62983091 Msa0216790:intron 30.0%
! GCTACTCCAAACAATTTTAT+TGG + chr2_1:62983289-62983308 None:intergenic 30.0%
GTAGCCGAAGAATATATTAA+TGG - chr2_1:62983304-62983323 Msa0216790:intron 30.0%
AGCCGAAGAATATATTAATG+GGG - chr2_1:62983306-62983325 Msa0216790:intron 30.0%
TACTTGGAAATTAAGCCATT+AGG + chr2_1:62983456-62983475 None:intergenic 30.0%
CATAGGAAAATAGTTTCACT+TGG + chr2_1:62983486-62983505 None:intergenic 30.0%
GAAATCAGTTATGAAGAATC+TGG - chr2_1:62983505-62983524 Msa0216790:CDS 30.0%
AAATTCTCGTTCAGTTAAAC+AGG - chr2_1:62983774-62983793 Msa0216790:CDS 30.0%
! CAGATTAATGTATTCTAGAG+AGG - chr2_1:62983868-62983887 Msa0216790:five_prime_UTR 30.0%
! TAATGTATTCTAGAGAGGAT+AGG - chr2_1:62983873-62983892 Msa0216790:five_prime_UTR 30.0%
ATACCACACCTTTATTATCT+TGG - chr2_1:62983961-62983980 Msa0216790:five_prime_UTR 30.0%
AAACCAAGATAATAAAGGTG+TGG + chr2_1:62983967-62983986 Msa0216800:intron 30.0%
! AGAAGATTGAAGATACGTTT+TGG + chr2_1:62983991-62984010 Msa0216800:intron 30.0%
TTGGAAAGAACAACATGTGA+AGG - chr2_1:62980181-62980200 Msa0216790:three_prime_UTR 35.0%
AAAGGTTTAGACATGTCGAA+TGG + chr2_1:62980305-62980324 None:intergenic 35.0%
GACATGGGGAATATTGAATA+TGG + chr2_1:62980363-62980382 None:intergenic 35.0%
AATTGTACAAGAGTGGACAT+GGG + chr2_1:62980378-62980397 None:intergenic 35.0%
GATAGAGAATTGTACAAGAG+TGG + chr2_1:62980385-62980404 None:intergenic 35.0%
! TTTACTTCTTTTCATCTGGG+TGG - chr2_1:62980483-62980502 Msa0216790:intron 35.0%
GAGGCGCAGTATTTAAAAAT+GGG - chr2_1:62980547-62980566 Msa0216790:intron 35.0%
GGATTTGGATTCAATAATGG+TGG - chr2_1:62980633-62980652 Msa0216790:intron 35.0%
TTTGGATTCAATAATGGTGG+AGG - chr2_1:62980636-62980655 Msa0216790:intron 35.0%
TTGACTTATCTCTCAATGAC+TGG - chr2_1:62980720-62980739 Msa0216790:intron 35.0%
ACTTGTGTGACATTATGTCA+CGG - chr2_1:62980809-62980828 Msa0216790:intron 35.0%
ACAACACATACAACACATCT+GGG + chr2_1:62980877-62980896 None:intergenic 35.0%
! TAATTAGTAAGCACTAGCCT+AGG + chr2_1:62980973-62980992 None:intergenic 35.0%
!! ATTTTAATGGGGCAACATCA+GGG + chr2_1:62981106-62981125 None:intergenic 35.0%
!!! TATTTTAATGGGGCAACATC+AGG + chr2_1:62981107-62981126 None:intergenic 35.0%
ATTTACAAGAGGCTAATTCC+GGG + chr2_1:62981197-62981216 None:intergenic 35.0%
CATTTACAAGAGGCTAATTC+CGG + chr2_1:62981198-62981217 None:intergenic 35.0%
GTAAATGCTTTACACATGCA+AGG - chr2_1:62981211-62981230 Msa0216790:intron 35.0%
TCTATGATAGGGTCATATGA+TGG - chr2_1:62981243-62981262 Msa0216790:intron 35.0%
!! CCTTACAAGTCAGTTTTGTA+CGG - chr2_1:62981298-62981317 Msa0216790:intron 35.0%
!! CTTACAAGTCAGTTTTGTAC+GGG - chr2_1:62981299-62981318 Msa0216790:intron 35.0%
! GGCTCAACCTAAATTTTAAG+AGG - chr2_1:62981329-62981348 Msa0216790:intron 35.0%
AGAATGTTGCAATCAGGATA+GGG + chr2_1:62981500-62981519 None:intergenic 35.0%
AAGAATGTTGCAATCAGGAT+AGG + chr2_1:62981501-62981520 None:intergenic 35.0%
!! ATATAATGAAAGGCACTGTG+AGG - chr2_1:62981954-62981973 Msa0216790:intron 35.0%
AAAAAGGTTGACCGCAAAAT+GGG + chr2_1:62982277-62982296 None:intergenic 35.0%
! TGATGGTAATGAGTTTGTCA+AGG - chr2_1:62982418-62982437 Msa0216790:intron 35.0%
CTTGTCCAAATGTTGTAGAT+TGG + chr2_1:62982463-62982482 None:intergenic 35.0%
AGCACCATCAACAAAGATAA+GGG + chr2_1:62982587-62982606 None:intergenic 35.0%
CGAAACAGACATGAAATCTT+AGG - chr2_1:62982956-62982975 Msa0216790:intron 35.0%
! CTAACACAATTTTTACGAGG+TGG - chr2_1:62983075-62983094 Msa0216790:intron 35.0%
CTTATATAGCTCACTCCTAA+TGG - chr2_1:62983438-62983457 Msa0216790:CDS 35.0%
TTCACTTGGTTCACATTACT+TGG + chr2_1:62983472-62983491 None:intergenic 35.0%
! AGTTATGAAGAATCTGGAAC+TGG - chr2_1:62983511-62983530 Msa0216790:CDS 35.0%
! AACATTGACTAGGATCCAAA+TGG + chr2_1:62983623-62983642 None:intergenic 35.0%
ATTGTACAAGAGTGGACATG+GGG + chr2_1:62980377-62980396 None:intergenic 40.0%
GAATTGTACAAGAGTGGACA+TGG + chr2_1:62980379-62980398 None:intergenic 40.0%
!! TTTCAAGTTGAGAGCATGCA+GGG - chr2_1:62980506-62980525 Msa0216790:intron 40.0%
! GGAGGCGCAGTATTTAAAAA+TGG - chr2_1:62980546-62980565 Msa0216790:intron 40.0%
!! GATTTTGGGAAATCTTGCTC+TGG - chr2_1:62980689-62980708 Msa0216790:intron 40.0%
TGTCACGGTGACATTAAATC+TGG - chr2_1:62980824-62980843 Msa0216790:intron 40.0%
GTCACGGTGACATTAAATCT+GGG - chr2_1:62980825-62980844 Msa0216790:intron 40.0%
CACAACACATACAACACATC+TGG + chr2_1:62980878-62980897 None:intergenic 40.0%
GATGTGTTGTATGTGTTGTG+TGG - chr2_1:62980878-62980897 Msa0216790:intron 40.0%
ACACATTGCCACACAATATC+TGG + chr2_1:62980905-62980924 None:intergenic 40.0%
GTCACGGTGACATTAAATCT+GGG + chr2_1:62980825-62980844 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG + chr2_1:62980824-62980843 None:intergenic 40.0%
! AGGAGTGTGACATTATGTCA+CGG + chr2_1:62980953-62980972 None:intergenic 40.0%
TGACATAATGTCACACTCCT+AGG - chr2_1:62980953-62980972 Msa0216790:intron 40.0%
! AGGCAAGGAATGTCTTTTTC+AGG + chr2_1:62981281-62981300 None:intergenic 40.0%
!! CAAAACTGACTTGTAAGGCA+AGG + chr2_1:62981296-62981315 None:intergenic 40.0%
!! CCGTACAAAACTGACTTGTA+AGG + chr2_1:62981301-62981320 None:intergenic 40.0%
!! CAGTTTTGTACGGGTGAATA+AGG - chr2_1:62981308-62981327 Msa0216790:intron 40.0%
TGAACGTTAACACAGCAGTA+AGG + chr2_1:62981368-62981387 None:intergenic 40.0%
TGTTGCAAGATGATAGCAAG+AGG + chr2_1:62981392-62981411 None:intergenic 40.0%
AATGTTGCAATCAGGATAGG+GGG + chr2_1:62981498-62981517 None:intergenic 40.0%
GAATGTTGCAATCAGGATAG+GGG + chr2_1:62981499-62981518 None:intergenic 40.0%
TATTCCCACACAGATCTTTG+CGG - chr2_1:62981880-62981899 Msa0216790:intron 40.0%
!! TTAGTACCGATAGTAGGTCT+TGG - chr2_1:62981905-62981924 Msa0216790:CDS 40.0%
! AAAGCACCAAGACCTACTAT+CGG + chr2_1:62981914-62981933 None:intergenic 40.0%
GCAGGTCGAGATATAATGAA+AGG - chr2_1:62981944-62981963 Msa0216790:intron 40.0%
TATATGCAGTGTCCAAACTG+TGG - chr2_1:62982094-62982113 Msa0216790:intron 40.0%
GAAAAAGGTTGACCGCAAAA+TGG + chr2_1:62982278-62982297 None:intergenic 40.0%
! TTTTGCGGTCAACCTTTTTC+TGG - chr2_1:62982278-62982297 Msa0216790:CDS 40.0%
!! AACCTTTTTCTGGTAAGCTG+TGG - chr2_1:62982288-62982307 Msa0216790:intron 40.0%
AACCACAGCTTACCAGAAAA+AGG + chr2_1:62982293-62982312 None:intergenic 40.0%
CAGCACCATCAACAAAGATA+AGG + chr2_1:62982588-62982607 None:intergenic 40.0%
GTGTTTCCGTGTTTCGTTTA+TGG - chr2_1:62982607-62982626 Msa0216790:intron 40.0%
TGTCTGCCATAAACGAAACA+CGG + chr2_1:62982616-62982635 None:intergenic 40.0%
TGTTTCGTTTATGGCAGACA+AGG - chr2_1:62982616-62982635 Msa0216790:intron 40.0%
TTTATGGCAGACAAGGATTC+TGG - chr2_1:62982623-62982642 Msa0216790:intron 40.0%
! GTCGCTATTAAGAAAAGCAC+AGG + chr2_1:62982997-62983016 None:intergenic 40.0%
! AGCTATATAAGCGAGAGCAT+TGG + chr2_1:62983429-62983448 None:intergenic 40.0%
! AAGAATCTGGAACTGGAATG+TGG - chr2_1:62983518-62983537 Msa0216790:CDS 40.0%
TGACTAGGATCCAAATGGTT+AGG + chr2_1:62983618-62983637 None:intergenic 40.0%
! GGACATACTCAACATTGACT+AGG + chr2_1:62983633-62983652 None:intergenic 40.0%
TGGCAAGTGTTCGTTGGATT+TGG - chr2_1:62980162-62980181 Msa0216790:three_prime_UTR 45.0%
!! GTTTCAAGTTGAGAGCATGC+AGG - chr2_1:62980505-62980524 Msa0216790:intron 45.0%
!!! AGGGAGAGGTGCTCTTTTTT+GGG - chr2_1:62980525-62980544 Msa0216790:intron 45.0%
TGGGTGTATGTGGGAAGAAA+AGG - chr2_1:62980566-62980585 Msa0216790:intron 45.0%
GGGTGTATGTGGGAAGAAAA+GGG - chr2_1:62980567-62980586 Msa0216790:intron 45.0%
GGTGTATGTGGGAAGAAAAG+GGG - chr2_1:62980568-62980587 Msa0216790:intron 45.0%
! GGATTCAATAATGGTGGAGG+TGG - chr2_1:62980639-62980658 Msa0216790:intron 45.0%
! TTCAATAATGGTGGAGGTGG+TGG - chr2_1:62980642-62980661 Msa0216790:intron 45.0%
! TGGTAGCACTGCTAGGATTT+TGG - chr2_1:62980674-62980693 Msa0216790:intron 45.0%
! GGTAGCACTGCTAGGATTTT+GGG - chr2_1:62980675-62980694 Msa0216790:intron 45.0%
CTCTCAATGACTGGACAACT+TGG - chr2_1:62980729-62980748 Msa0216790:intron 45.0%
!! AGAGAGAGAGAGTACCCAAA+TGG + chr2_1:62980778-62980797 None:intergenic 45.0%
AAATCTGGGCCACACAAAGA+TGG - chr2_1:62980839-62980858 Msa0216790:intron 45.0%
CACAACACACCATCTTTGTG+TGG + chr2_1:62980851-62980870 None:intergenic 45.0%
CACAAAGATGGTGTGTTGTG+TGG - chr2_1:62980851-62980870 Msa0216790:intron 45.0%
TGTGTGGTCCAGATATTGTG+TGG - chr2_1:62980894-62980913 Msa0216790:intron 45.0%
AGGTAAGACGCGTCTATGAT+AGG - chr2_1:62981231-62981250 Msa0216790:intron 45.0%
GGTAAGACGCGTCTATGATA+GGG - chr2_1:62981232-62981251 Msa0216790:intron 45.0%
TAACACAGCAGTAAGGTTGC+TGG + chr2_1:62981361-62981380 None:intergenic 45.0%
AACACCGCAAAGATCTGTGT+GGG + chr2_1:62981887-62981906 None:intergenic 45.0%
TAACACCGCAAAGATCTGTG+TGG + chr2_1:62981888-62981907 None:intergenic 45.0%
! TTGCAGTTGTGCCCATTTTG+CGG - chr2_1:62982263-62982282 Msa0216790:CDS 45.0%
CTTGTAGACTCTCCAATCAG+CGG - chr2_1:62983047-62983066 Msa0216790:intron 45.0%
! ATCTGGAACTGGAATGTGGT+TGG - chr2_1:62983522-62983541 Msa0216790:CDS 45.0%
!!! TATAAATATATTTTACTATT+TGG + chr2_1:62983101-62983120 None:intergenic 5.0%
!!! CAGGGAGAGGTGCTCTTTTT+TGG - chr2_1:62980524-62980543 Msa0216790:intron 50.0%
!!! GAGAGGTGCTCTTTTTTGGG+AGG - chr2_1:62980528-62980547 Msa0216790:intron 50.0%
! GGAAGAAAAGGGGTGCAAGA+GGG - chr2_1:62980578-62980597 Msa0216790:intron 50.0%
GTGCAAGAGGGAAAAGAGAG+TGG - chr2_1:62980590-62980609 Msa0216790:intron 50.0%
! GAGATGATGGTAGCACTGCT+AGG - chr2_1:62980667-62980686 Msa0216790:intron 50.0%
GAAATCTTGCTCTGGCTGCT+GGG - chr2_1:62980697-62980716 Msa0216790:intron 50.0%
CAATGACTGGACAACTTGGC+TGG - chr2_1:62980733-62980752 Msa0216790:intron 50.0%
CTCTCTCTCTCTCTCTCGAT+TGG - chr2_1:62980786-62980805 Msa0216790:intron 50.0%
GTGTGGCAATGTGTGTTGTG+TGG - chr2_1:62980911-62980930 Msa0216790:intron 50.0%
GGATAGGGGGAGATTCTACA+AGG + chr2_1:62981485-62981504 None:intergenic 50.0%
!! GCGGTGTTAGTACCGATAGT+AGG - chr2_1:62981899-62981918 Msa0216790:CDS 50.0%
!! TAGGTCTTGGTGCTTTCCTC+TGG - chr2_1:62981918-62981937 Msa0216790:CDS 50.0%
!! TCTTGGTGCTTTCCTCTGGT+GGG - chr2_1:62981922-62981941 Msa0216790:CDS 50.0%
TCCTATGGATGGGGTAGCAT+TGG + chr2_1:62983388-62983407 None:intergenic 50.0%
CGAATGGCTTCCTATGGATG+GGG + chr2_1:62983397-62983416 None:intergenic 50.0%
GCGAATGGCTTCCTATGGAT+GGG + chr2_1:62983398-62983417 None:intergenic 50.0%
!! AAGCGAGAGCATTGGAGACA+GGG + chr2_1:62983421-62983440 None:intergenic 50.0%
!! TAAGCGAGAGCATTGGAGAC+AGG + chr2_1:62983422-62983441 None:intergenic 50.0%
TCGTTCAGTTAAACAGGCCG+TGG - chr2_1:62983780-62983799 Msa0216790:CDS 50.0%
ACTCGTTGCGTCTTAAGCAC+CGG + chr2_1:62983816-62983835 None:intergenic 50.0%
CCAACGAACACTTGCCACGT+TGG + chr2_1:62980159-62980178 None:intergenic 55.0%
CCAACGTGGCAAGTGTTCGT+TGG - chr2_1:62980156-62980175 Msa0216790:three_prime_UTR 55.0%
! AGTTGAGAGCATGCAGGGAG+AGG - chr2_1:62980511-62980530 Msa0216790:intron 55.0%
! GGGAAGAAAAGGGGTGCAAG+AGG - chr2_1:62980577-62980596 Msa0216790:intron 55.0%
!! GGAGGTGGTGGAAGAGATGA+TGG - chr2_1:62980654-62980673 Msa0216790:intron 55.0%
GGAAATCTTGCTCTGGCTGC+TGG - chr2_1:62980696-62980715 Msa0216790:intron 55.0%
!! GTCTTGGTGCTTTCCTCTGG+TGG - chr2_1:62981921-62981940 Msa0216790:CDS 55.0%
! GTGTTAGCTTCGCCGCTGAT+TGG + chr2_1:62983062-62983081 None:intergenic 55.0%
GCCAATGCTACCCCATCCAT+AGG - chr2_1:62983384-62983403 Msa0216790:intron 55.0%
GGCGAATGGCTTCCTATGGA+TGG + chr2_1:62983399-62983418 None:intergenic 55.0%
!! AGCGAGAGCATTGGAGACAG+GGG + chr2_1:62983420-62983439 None:intergenic 55.0%
!! AGGCCGTGGCTTGCATTTTC+CGG - chr2_1:62983794-62983813 Msa0216790:CDS 55.0%
GCACCGGAAAATGCAAGCCA+CGG + chr2_1:62983800-62983819 None:intergenic 55.0%
TATCTCGACCTGCCCACCAG+AGG + chr2_1:62981937-62981956 None:intergenic 60.0%
CAGGGGCGAATGGCTTCCTA+TGG + chr2_1:62983403-62983422 None:intergenic 60.0%
GCATTGGAGACAGGGGCGAA+TGG + chr2_1:62983413-62983432 None:intergenic 60.0%
! GGTGCTTTCCTCTGGTGGGC+AGG - chr2_1:62981926-62981945 Msa0216790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 62980149 62984042 62980149 ID=Msa0216790;Name=Msa0216790
chr2_1 mRNA 62980149 62984042 62980149 ID=Msa0216790-mRNA-1;Parent=Msa0216790;Name=Msa0216790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=229|1|1|1|0.83|0.71|7|312|241
chr2_1 exon 62980149 62980434 62980149 ID=Msa0216790-mRNA-1:exon:17452;Parent=Msa0216790-mRNA-1
chr2_1 exon 62981477 62981558 62981477 ID=Msa0216790-mRNA-1:exon:17451;Parent=Msa0216790-mRNA-1
chr2_1 exon 62981679 62981774 62981679 ID=Msa0216790-mRNA-1:exon:17450;Parent=Msa0216790-mRNA-1
chr2_1 exon 62981892 62981947 62981892 ID=Msa0216790-mRNA-1:exon:17449;Parent=Msa0216790-mRNA-1
chr2_1 exon 62982054 62982088 62982054 ID=Msa0216790-mRNA-1:exon:17448;Parent=Msa0216790-mRNA-1
chr2_1 exon 62982221 62982298 62982221 ID=Msa0216790-mRNA-1:exon:17447;Parent=Msa0216790-mRNA-1
chr2_1 exon 62983409 62984042 62983409 ID=Msa0216790-mRNA-1:exon:17446;Parent=Msa0216790-mRNA-1
chr2_1 five_prime_UTR 62983814 62984042 62983814 ID=Msa0216790-mRNA-1:five_prime_utr;Parent=Msa0216790-mRNA-1
chr2_1 CDS 62983409 62983813 62983409 ID=Msa0216790-mRNA-1:cds;Parent=Msa0216790-mRNA-1
chr2_1 CDS 62982221 62982298 62982221 ID=Msa0216790-mRNA-1:cds;Parent=Msa0216790-mRNA-1
chr2_1 CDS 62982054 62982088 62982054 ID=Msa0216790-mRNA-1:cds;Parent=Msa0216790-mRNA-1
chr2_1 CDS 62981892 62981947 62981892 ID=Msa0216790-mRNA-1:cds;Parent=Msa0216790-mRNA-1
chr2_1 CDS 62981679 62981774 62981679 ID=Msa0216790-mRNA-1:cds;Parent=Msa0216790-mRNA-1
chr2_1 CDS 62981503 62981558 62981503 ID=Msa0216790-mRNA-1:cds;Parent=Msa0216790-mRNA-1
chr2_1 three_prime_UTR 62981477 62981502 62981477 ID=Msa0216790-mRNA-1:three_prime_utr;Parent=Msa0216790-mRNA-1
chr2_1 three_prime_UTR 62980149 62980434 62980149 ID=Msa0216790-mRNA-1:three_prime_utr;Parent=Msa0216790-mRNA-1
Gene Sequence

>Msa0216790

ATGTCCACTCTTGTACAATTCTCTATCAAATTTTCACACTTGAAACCCAATGATAACATCTACAAGACACAACCCACTTTTTCTTTCTCCAATTTAGACCCAAAGTTTACTTCTTTTCATCTGGGTGGTTTCAAGTTGAGAGCATGCAGGGAGAGGTGCTCTTTTTTGGGAGGCGCAGTATTTAAAAATGGGTGTATGTGGGAAGAAAAGGGGTGCAAGAGGGAAAAGAGAGTGGTTTTAGTAAAGAATAATAAAGGATTTGGATTCAATAATGGTGGAGGTGGTGGAAGAGATGATGGTAGCACTGCTAGGATTTTGGGAAATCTTGCTCTGGCTGCTGGGTTGACTTATCTCTCAATGACTGGACAACTTGGCTGGATAATTGATGCTATTGTTTCCATTTGGATCTTTGCGGTGTTAGTACCGATAGTAGGTCTTGGTGCTTTCCTCTGGTGGGCAGGTCGAGATATAATGAAAGGCACTTGTCCAAACTGTGGAAATGATTTTCAGGTTTTCAAATCCACTTTAAATGAAGAATTGCAGTTGTGCCCATTTTGCGGTCAACCTTTTTCTGTTGATGGTAATGAGTTTGTCAAGGAACCTGTGAATTTTTCAAACCAATCTACAACATTTGGACAAGCATTCGACAATTTCTCGCGTTCTAAAAATGACAAGGATTCTGGTAGAGCAATTGATGTTGAAGCCGAAATAAAAGACGCAGATTGA

Protein sequence

>Msa0216790

MSTLVQFSIKFSHLKPNDNIYKTQPTFSFSNLDPKFTSFHLGGFKLRACRERCSFLGGAVFKNGCMWEEKGCKREKRVVLVKNNKGFGFNNGGGGGRDDGSTARILGNLALAAGLTYLSMTGQLGWIIDAIVSIWIFAVLVPIVGLGAFLWWAGRDIMKGTCPNCGNDFQVFKSTLNEELQLCPFCGQPFSVDGNEFVKEPVNFSNQSTTFGQAFDNFSRSKNDKDSGRAIDVEAEIKDAD*