AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0732100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0732100 MtrunA17_Chr5g0426581 97.740 354 6 2 1 353 1 353 0.0 706
Msa0732100 MtrunA17_Chr4g0037131 28.846 260 109 9 109 331 24 244 6.82e-14 71.2
Msa0732100 MtrunA17_Chr5g0405731 32.934 167 74 5 113 277 27 157 4.53e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0732100 AT4G09010.1 68.839 353 103 4 2 353 3 349 2.74e-170 478
Msa0732100 AT4G09010.3 68.839 353 103 4 2 353 50 396 1.07e-168 476
Msa0732100 AT4G09010.2 77.289 273 62 0 81 353 12 284 8.52e-156 439
Msa0732100 AT4G35970.1 30.864 243 125 9 109 331 22 241 6.23e-15 74.7
Msa0732100 AT4G35970.2 32.973 185 87 7 96 278 7 156 6.88e-15 73.6
Msa0732100 AT4G35000.1 30.612 196 90 7 112 303 26 179 1.93e-13 70.5

Find 100 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTACAGCTCAAATTAA+AGG 0.197481 5_1:-44004202 Msa0732100:intron
ACACTTGCTTTCTCCCAAAT+TGG 0.208655 5_1:+44002491 None:intergenic
CAGAGGGGAGAATTCCAATT+TGG 0.239430 5_1:-44002505 Msa0732100:CDS
TTGGTGTCTTTCTTTGTCTT+TGG 0.274461 5_1:+44006770 None:intergenic
GCTGTGTTGTCTGCATTTAT+AGG 0.277393 5_1:-44002097 Msa0732100:CDS
CAACTTAATGAGAAGAGATA+TGG 0.342787 5_1:+44001631 None:intergenic
TCTGGTCCATTCTTCAATAT+AGG 0.359520 5_1:+44001569 None:intergenic
TGCTTCCTCTATAAAATTCA+AGG 0.360339 5_1:+44003450 None:intergenic
GGATGCAACAGAGACCTTAT+TGG 0.361371 5_1:-44002065 Msa0732100:CDS
TGTACCCATGGAGCAACATC+TGG 0.365811 5_1:+44002034 None:intergenic
GACACCAAACAATAACAATT+TGG 0.374004 5_1:-44006755 Msa0732100:five_prime_UTR
GTCTCTGTTGCATCCTGGTC+AGG 0.375828 5_1:+44002073 None:intergenic
GACGCTATATACAGCAATAA+AGG 0.382507 5_1:-44004179 Msa0732100:intron
ATGAAGAAGAACAGTTCAAT+TGG 0.384244 5_1:-44006250 Msa0732100:CDS
AGAGGGGAGAATTCCAATTT+GGG 0.391351 5_1:-44002504 Msa0732100:CDS
CCTTCTCTCCATCCACTTGG+TGG 0.400089 5_1:-44006691 Msa0732100:CDS
TTCTTACAGCTCAAATTAAA+GGG 0.408017 5_1:-44004201 Msa0732100:intron
AGTTTGTAGGCAACGAAAAC+GGG 0.408809 5_1:-44003893 Msa0732100:intron
TTCACAAAATTGAGTACCTT+GGG 0.415559 5_1:-44001857 Msa0732100:CDS
TACACTGCATATGGATCAAA+TGG 0.415823 5_1:-44003110 Msa0732100:CDS
ATCTGGATCAGATGCCAATA+AGG 0.416378 5_1:+44002051 None:intergenic
ATGAGATCTGCATAGGAAAT+AGG 0.417756 5_1:+44003394 None:intergenic
ATGTCAAAACTTGAAATTGA+AGG 0.421629 5_1:+44001720 None:intergenic
CAAATGGTTCTATCCGGTTC+AGG 0.423018 5_1:-44003865 Msa0732100:intron
AAGTTTGTAGGCAACGAAAA+CGG 0.425385 5_1:-44003894 Msa0732100:intron
CGATGCTTTGACTTATGATA+AGG 0.425822 5_1:-44003994 Msa0732100:intron
AATTTACTCTACACTGCATA+TGG 0.428559 5_1:-44003119 Msa0732100:CDS
ACGACCAAATTGTTATTGTT+TGG 0.438710 5_1:+44006751 None:intergenic
TTGAAATTGAAGGTTTGTCC+TGG 0.440605 5_1:+44001730 None:intergenic
AGTTAAACTTACCTCATAAT+CGG 0.441153 5_1:+44001976 None:intergenic
TTGGGAGAAAGCAAGTGTTC+AGG 0.442764 5_1:-44002486 Msa0732100:CDS
AACAATTTGGTCGTAGCAAT+GGG 0.445746 5_1:-44006742 Msa0732100:exon
TGTCTTTCTTTGTCTTTGGA+AGG 0.449813 5_1:+44006774 None:intergenic
GGTTTGTTCGATAGGCAATT+TGG 0.451516 5_1:-44002554 Msa0732100:CDS
CTGAACCGGATAGAACCATT+TGG 0.455331 5_1:+44003866 None:intergenic
GAAATGTTCAACCTGCATAC+TGG 0.458175 5_1:+44003371 None:intergenic
GTTTAGAGCCAGTGTTAGAA+TGG 0.459963 5_1:+44004016 None:intergenic
CAAATTGGAATTCTCCCCTC+TGG 0.464493 5_1:+44002506 None:intergenic
AAGGAAGAGTTGAGATTGAG+AGG 0.468313 5_1:+44006710 None:intergenic
ACGAAAACGGGTGGCCCAAA+TGG 0.472902 5_1:-44003881 Msa0732100:CDS
TGTCTCTCGTACCGATTATG+AGG 0.474430 5_1:-44001987 Msa0732100:intron
CATTGGCGTGACCATTGGTT+TGG 0.477570 5_1:-44006204 Msa0732100:intron
AGCGCTGTCTGCGTTCTATT+AGG 0.478156 5_1:+44004324 None:intergenic
TCAAGCTCTGGATCGCTCCT+TGG 0.478254 5_1:-44004365 Msa0732100:CDS
TAACAATTTGGTCGTAGCAA+TGG 0.478257 5_1:-44006743 Msa0732100:exon
AAATGCATTGGCGTGACCAT+TGG 0.478260 5_1:-44006209 Msa0732100:CDS
CTTCCTTCTCTCCATCCACT+TGG 0.486731 5_1:-44006694 Msa0732100:CDS
AGAGATGTTCTTAAATGCAT+TGG 0.494004 5_1:-44006221 Msa0732100:CDS
TGAACCGGATAGAACCATTT+GGG 0.495657 5_1:+44003867 None:intergenic
TGAAATTGAAGGTTTGTCCT+GGG 0.497428 5_1:+44001731 None:intergenic
TTTCACAAAATTGAGTACCT+TGG 0.502680 5_1:-44001858 Msa0732100:CDS
TGATCCAGATGTTGCTCCAT+GGG 0.508395 5_1:-44002038 Msa0732100:CDS
GCGGTGGAAATGAGGAGAAA+GGG 0.509126 5_1:-44003142 Msa0732100:CDS
AGAGCCAGTGTTAGAATGGA+TGG 0.509679 5_1:+44004020 None:intergenic
GCAAAACCTATATTGAAGAA+TGG 0.509887 5_1:-44001575 Msa0732100:three_prime_UTR
CAGCAGCATTAGCGGTTCCA+AGG 0.510943 5_1:+44004348 None:intergenic
ATAGGAAATAGGTCCACCTT+TGG 0.513096 5_1:+44003405 None:intergenic
AGAATGGATGGAGTAAGATC+AGG 0.513947 5_1:+44004032 None:intergenic
AGTAGGCTTTGGTCCTCGCC+AGG 0.515071 5_1:-44002441 Msa0732100:intron
CTGATCCAGATGTTGCTCCA+TGG 0.515839 5_1:-44002039 Msa0732100:CDS
CCACCAAGTGGATGGAGAGA+AGG 0.516532 5_1:+44006691 None:intergenic
TCGCAAATGCGGTGGAAATG+AGG 0.517351 5_1:-44003150 Msa0732100:CDS
TACTGAACGAGGTTCATGTC+TGG 0.526900 5_1:+44006639 None:intergenic
TGCGGTGGAAATGAGGAGAA+AGG 0.528919 5_1:-44003143 Msa0732100:CDS
TATTAGGTCAGCAGCATTAG+CGG 0.531810 5_1:+44004340 None:intergenic
AAAACAAAAGAGTGAAACTC+TGG 0.536458 5_1:+44001551 None:intergenic
GTGGCCCAAATGGTTCTATC+CGG 0.536727 5_1:-44003871 Msa0732100:CDS
TAGGAGTCGATATCAAGCTC+TGG 0.543537 5_1:-44004377 Msa0732100:CDS
ATAAGGTCTCTGTTGCATCC+TGG 0.547802 5_1:+44002068 None:intergenic
AATGAGAACCACCAAGTGGA+TGG 0.555144 5_1:+44006683 None:intergenic
GCAGATCTCATCCAGTATGC+AGG 0.556332 5_1:-44003382 Msa0732100:intron
ATCAGTGGGGTTTGTTCGAT+AGG 0.556677 5_1:-44002562 Msa0732100:intron
AGACAGTTTCGCGGCTCCGT+TGG 0.569239 5_1:+44002005 None:intergenic
AATAAGTAGACCTGAAAACA+AGG 0.576124 5_1:-44003485 Msa0732100:CDS
TGCATATGGATCAAATGGAC+AGG 0.579849 5_1:-44003105 Msa0732100:intron
TTGTCTTTGGAAGGAGAGAG+AGG 0.580804 5_1:+44006783 None:intergenic
GAAATTGAAGGTTTGTCCTG+GGG 0.581628 5_1:+44001732 None:intergenic
TGTTCGATAGGCAATTTGGT+AGG 0.585772 5_1:-44002550 Msa0732100:CDS
TACTCCATCCATTCTAACAC+TGG 0.586894 5_1:-44004024 Msa0732100:CDS
TGTAGCACAAAGTGCAACAA+AGG 0.588580 5_1:-44003195 Msa0732100:intron
TGCATTTATAGGTCCTGACC+AGG 0.595590 5_1:-44002086 Msa0732100:CDS
ATAGATTCATATTCCAAAGG+TGG 0.598179 5_1:-44003418 Msa0732100:CDS
TCTGCAATTCGCAAATGCGG+TGG 0.600496 5_1:-44003158 Msa0732100:CDS
AAATTGAAGGTTTGTCCTGG+GGG 0.611071 5_1:+44001733 None:intergenic
TACTGACGAGGCAGATCCAG+AGG 0.614094 5_1:-44002522 Msa0732100:CDS
GCTTCTGCAATTCGCAAATG+CGG 0.614456 5_1:-44003161 Msa0732100:CDS
GAGATAGATTCATATTCCAA+AGG 0.616050 5_1:-44003421 Msa0732100:CDS
AATGGTTCTTACCAAACCAA+TGG 0.621116 5_1:+44006193 None:intergenic
ATACTGGATGAGATCTGCAT+AGG 0.640053 5_1:+44003387 None:intergenic
TAAGTAGACCTGAAAACAAG+GGG 0.641900 5_1:-44003483 Msa0732100:CDS
CGGTACGAGAGACAGTTTCG+CGG 0.642474 5_1:+44001996 None:intergenic
ATAAGTAGACCTGAAAACAA+GGG 0.645785 5_1:-44003484 Msa0732100:CDS
ACTGACGAGGCAGATCCAGA+GGG 0.648159 5_1:-44002521 Msa0732100:CDS
AACCAAACACTTACTGAACG+AGG 0.658415 5_1:+44006628 None:intergenic
GTAATGTCGATCTTCTTGCG+AGG 0.665206 5_1:+44001803 None:intergenic
TTGTAGGCAACGAAAACGGG+TGG 0.681028 5_1:-44003890 Msa0732100:intron
AATATGGGAAGTACCTGGCG+AGG 0.697506 5_1:+44002428 None:intergenic
GGATAATGAGAACCACCAAG+TGG 0.698522 5_1:+44006679 None:intergenic
TGGTAGGACTGATACTGACG+AGG 0.738100 5_1:-44002534 Msa0732100:CDS
CTGACGAGGCAGATCCAGAG+GGG 0.738388 5_1:-44002520 Msa0732100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATTATTAT+TGG - chr5_1:44003860-44003879 Msa0732100:intron 0.0%
!!! TAATTAATGTTTTATTTTCA+TGG + chr5_1:44002812-44002831 None:intergenic 10.0%
!! AGAAAAAATATTATGATTAT+TGG + chr5_1:44004805-44004824 None:intergenic 10.0%
!! GGTAATAACATATATTAATA+TGG - chr5_1:44002330-44002349 Msa0732100:intron 15.0%
!!! TGTATTGACAAATTTTATTT+TGG + chr5_1:44002399-44002418 None:intergenic 15.0%
!!! TAATGTAATTTTCCATATTT+TGG - chr5_1:44003263-44003282 Msa0732100:intron 15.0%
!!! CATTAGAAAGTATTTAAAAT+AGG - chr5_1:44003761-44003780 Msa0732100:intron 15.0%
!!! TATTTAAAATAGGAAACTTA+GGG - chr5_1:44003771-44003790 Msa0732100:intron 15.0%
!!! CAAATTTTAGTATTTTGTAT+CGG + chr5_1:44004677-44004696 None:intergenic 15.0%
!! TAAGTATTATGTTTCAAAAA+GGG + chr5_1:44005002-44005021 None:intergenic 15.0%
!!! AATCAATTTTTGTTAAGAAT+AGG - chr5_1:44005074-44005093 Msa0732100:intron 15.0%
!! AATGAGTTATATATTATTGT+TGG + chr5_1:44005449-44005468 None:intergenic 15.0%
!!! TAGTTATTTTCAAACTTTAT+TGG - chr5_1:44005556-44005575 Msa0732100:intron 15.0%
!! CAAAAATAGTGATAAAATAT+GGG + chr5_1:44005934-44005953 None:intergenic 15.0%
!!! TGAATGATGATAATATGTTT+TGG - chr5_1:44001800-44001819 Msa0732100:CDS 20.0%
!! TAGAATCATAAGTTATACTT+TGG - chr5_1:44001893-44001912 Msa0732100:intron 20.0%
!! ACATATATTAATATGGAAAG+TGG - chr5_1:44002337-44002356 Msa0732100:intron 20.0%
!! AACATTAATTAATGCGAAAA+AGG - chr5_1:44002821-44002840 Msa0732100:intron 20.0%
!! ACATTAATTAATGCGAAAAA+GGG - chr5_1:44002822-44002841 Msa0732100:intron 20.0%
!! ACAAATATAATCCTTTCAAA+AGG - chr5_1:44003335-44003354 Msa0732100:intron 20.0%
!! TGCATTTCAATGATATAATT+TGG - chr5_1:44003473-44003492 Msa0732100:CDS 20.0%
!!! ATTGTTAATTTGAAACTCAA+TGG - chr5_1:44003503-44003522 Msa0732100:intron 20.0%
!!! GTATTTAAAATAGGAAACTT+AGG - chr5_1:44003770-44003789 Msa0732100:intron 20.0%
!!! AATATTTCAGCTCAAATTTT+TGG + chr5_1:44003834-44003853 None:intergenic 20.0%
!! ATTATTGGATATGTATTTAG+TGG - chr5_1:44003899-44003918 Msa0732100:intron 20.0%
!! CGATACAAAATACTAAAATT+TGG - chr5_1:44004675-44004694 Msa0732100:intron 20.0%
!! AAGTATTATGTTTCAAAAAG+GGG + chr5_1:44005001-44005020 None:intergenic 20.0%
!! TTTAAACATCTTTAGACAAT+AGG - chr5_1:44005340-44005359 Msa0732100:intron 20.0%
!! AATGAGTTATAAGTAAAATC+CGG + chr5_1:44005419-44005438 None:intergenic 20.0%
!! TTATATATTATTGTTGGAGA+GGG + chr5_1:44005443-44005462 None:intergenic 20.0%
!!! AATGTTAGTTTGATCTATTA+TGG - chr5_1:44005531-44005550 Msa0732100:intron 20.0%
!! GCAAAAATAGTGATAAAATA+TGG + chr5_1:44005935-44005954 None:intergenic 20.0%
!! AATTATGTTCTCTGTTTATT+TGG - chr5_1:44006217-44006236 Msa0732100:CDS 20.0%
!! TTTGGTTAAAAAAATTCACT+TGG - chr5_1:44006429-44006448 Msa0732100:intron 20.0%
! ATAATATGTACACCTAAGAA+AGG + chr5_1:44001772-44001791 None:intergenic 25.0%
! TTTCTTAGGTGTACATATTA+TGG - chr5_1:44001771-44001790 Msa0732100:exon 25.0%
! TTCTTAGGTGTACATATTAT+GGG - chr5_1:44001772-44001791 Msa0732100:exon 25.0%
! TGTTGTTCAAATGTATTGTT+AGG - chr5_1:44002032-44002051 Msa0732100:CDS 25.0%
!!! TTTGATTTTTGTACAGCAAA+TGG + chr5_1:44002061-44002080 None:intergenic 25.0%
! ATTACCTCTATTTATCAAAG+TGG + chr5_1:44002316-44002335 None:intergenic 25.0%
!!! ACGGTTTTATCCTTAAAATA+CGG - chr5_1:44002496-44002515 Msa0732100:CDS 25.0%
! GAGTGTTTATAAACTATCAT+TGG - chr5_1:44002539-44002558 Msa0732100:CDS 25.0%
! TTGTAAAGACAAAACTGTAA+GGG + chr5_1:44002680-44002699 None:intergenic 25.0%
!!! AACCAGTTTTATCTTATCAA+GGG - chr5_1:44003029-44003048 Msa0732100:intron 25.0%
!! GCTATATATATCCTTTTGAA+AGG + chr5_1:44003349-44003368 None:intergenic 25.0%
!! CTTACAAACAAAGCATTATT+AGG + chr5_1:44003379-44003398 None:intergenic 25.0%
!!! TTAATCTCAACCATTGATTT+TGG - chr5_1:44003566-44003585 Msa0732100:intron 25.0%
! TGATCAAGATGAAAATATGA+TGG + chr5_1:44003810-44003829 None:intergenic 25.0%
!!! ATTGATTTGATGATGAGTTT+CGG - chr5_1:44003927-44003946 Msa0732100:intron 25.0%
! AATTTCAGTGTAAGATTCTT+AGG - chr5_1:44004046-44004065 Msa0732100:intron 25.0%
! TTGACATATTAATGATCACA+TGG + chr5_1:44004082-44004101 None:intergenic 25.0%
! CATTAATATGTCAAACTCAA+TGG - chr5_1:44004088-44004107 Msa0732100:intron 25.0%
! TTCTTACAGCTCAAATTAAA+GGG - chr5_1:44004143-44004162 Msa0732100:intron 25.0%
! AATAAGCTCATATCCAAATT+CGG + chr5_1:44004265-44004284 None:intergenic 25.0%
!! TGTCTTTTATCGTTATTGAT+TGG - chr5_1:44004418-44004437 Msa0732100:intron 25.0%
! TAACATTCAAATCCAATGAT+AGG - chr5_1:44004520-44004539 Msa0732100:intron 25.0%
! TACATATGTTAACCTATCAT+TGG + chr5_1:44004535-44004554 None:intergenic 25.0%
! AGAATAAAAGACTACATCTA+TGG + chr5_1:44004561-44004580 None:intergenic 25.0%
!! TAGTACTATTAACCAGATTT+TGG + chr5_1:44005289-44005308 None:intergenic 25.0%
! TGTCTAAAGATGTTTAAATC+TGG + chr5_1:44005338-44005357 None:intergenic 25.0%
! TATATATTATTGTTGGAGAG+GGG + chr5_1:44005442-44005461 None:intergenic 25.0%
! GTTATATATTATTGTTGGAG+AGG + chr5_1:44005444-44005463 None:intergenic 25.0%
! AATTCAAAAACCAACATACA+AGG + chr5_1:44005504-44005523 None:intergenic 25.0%
!! TCATTTCATAAAGCTTTTGT+AGG + chr5_1:44005679-44005698 None:intergenic 25.0%
!! AAAGATAAATTTTCAGCAGT+AGG - chr5_1:44005886-44005905 Msa0732100:intron 25.0%
! AGTTAAACTTACCTCATAAT+CGG + chr5_1:44006371-44006390 None:intergenic 25.0%
!! TATACAAGAGAACTTTTGTT+TGG - chr5_1:44006411-44006430 Msa0732100:intron 25.0%
!!! ATAGTTAATTTTTTGTCCCA+AGG + chr5_1:44006506-44006525 None:intergenic 25.0%
!!! CTATTTTTACAACTTGAGTT+TGG + chr5_1:44006566-44006585 None:intergenic 25.0%
! ATGTCAAAACTTGAAATTGA+AGG + chr5_1:44006627-44006646 None:intergenic 25.0%
!!! TTTGCTTCAACTTTTTCTTT+TGG + chr5_1:44006754-44006773 None:intergenic 25.0%
GACACCAAACAATAACAATT+TGG - chr5_1:44001589-44001608 Msa0732100:intron 30.0%
! ACGACCAAATTGTTATTGTT+TGG + chr5_1:44001596-44001615 None:intergenic 30.0%
AGATAAAGTCAATGTATGTC+TGG - chr5_1:44001853-44001872 Msa0732100:CDS 30.0%
ATGAAGAAGAACAGTTCAAT+TGG - chr5_1:44002094-44002113 Msa0732100:CDS 30.0%
AGAGATGTTCTTAAATGCAT+TGG - chr5_1:44002123-44002142 Msa0732100:intron 30.0%
TAAGAACCATTCTGATTCTT+TGG - chr5_1:44002163-44002182 Msa0732100:intron 30.0%
CGAAAGAGATGTTTGATATT+GGG - chr5_1:44002370-44002389 Msa0732100:intron 30.0%
!! ATTTTAAGGATAAAACCGTG+AGG + chr5_1:44002495-44002514 None:intergenic 30.0%
CATAAAGTCTCAAACTGTTT+GGG + chr5_1:44002577-44002596 None:intergenic 30.0%
TAGTCACTAATTGAAGCTAA+GGG - chr5_1:44002609-44002628 Msa0732100:intron 30.0%
CTTGTAAAGACAAAACTGTA+AGG + chr5_1:44002681-44002700 None:intergenic 30.0%
GTCTTTACAAGATGTCTTAA+TGG - chr5_1:44002690-44002709 Msa0732100:intron 30.0%
TAGTATAACAACCTCACAAT+TGG + chr5_1:44002897-44002916 None:intergenic 30.0%
TTCAAAGAATACATACTGGT+TGG + chr5_1:44002921-44002940 None:intergenic 30.0%
TCAGTTCAAAGAATACATAC+TGG + chr5_1:44002925-44002944 None:intergenic 30.0%
!! CAACCAGTTTTATCTTATCA+AGG - chr5_1:44003028-44003047 Msa0732100:intron 30.0%
TACCCTTGATAAGATAAAAC+TGG + chr5_1:44003034-44003053 None:intergenic 30.0%
!! TGCAAAGAGTTATTGACTTT+GGG + chr5_1:44003207-44003226 None:intergenic 30.0%
TAGTAAAATGCAGAGAAAAC+TGG + chr5_1:44003241-44003260 None:intergenic 30.0%
GCTAAAAGCTATAAGAAGAT+GGG + chr5_1:44003637-44003656 None:intergenic 30.0%
TGCTAAAAGCTATAAGAAGA+TGG + chr5_1:44003638-44003657 None:intergenic 30.0%
AAGTCTGTTGTCAAAAACAA+AGG - chr5_1:44003703-44003722 Msa0732100:intron 30.0%
GTTCTTACAGCTCAAATTAA+AGG - chr5_1:44004142-44004161 Msa0732100:intron 30.0%
AGAGAATAGAATTCCGAATT+TGG - chr5_1:44004249-44004268 Msa0732100:intron 30.0%
TGGAATCTTCTTAAGTTTGT+AGG - chr5_1:44004438-44004457 Msa0732100:intron 30.0%
!! AAAAACAAAAGTACCTGAAC+CGG + chr5_1:44004495-44004514 None:intergenic 30.0%
! AACAGTTAGTCTGCTAAATA+AGG - chr5_1:44004588-44004607 Msa0732100:intron 30.0%
!!! TAGTATTTTGTATCGGCTAT+AGG + chr5_1:44004670-44004689 None:intergenic 30.0%
ATTCATACAAGCAAAGAATG+AGG + chr5_1:44004770-44004789 None:intergenic 30.0%
AATAAGTAGACCTGAAAACA+AGG - chr5_1:44004859-44004878 Msa0732100:intron 30.0%
ATAAGTAGACCTGAAAACAA+GGG - chr5_1:44004860-44004879 Msa0732100:intron 30.0%
TGCTTCCTCTATAAAATTCA+AGG + chr5_1:44004897-44004916 None:intergenic 30.0%
GAGATAGATTCATATTCCAA+AGG - chr5_1:44004923-44004942 Msa0732100:intron 30.0%
ATAGATTCATATTCCAAAGG+TGG - chr5_1:44004926-44004945 Msa0732100:intron 30.0%
AATGAAGACAATAAAGTCAG+TGG + chr5_1:44005128-44005147 None:intergenic 30.0%
AATTTACTCTACACTGCATA+TGG - chr5_1:44005225-44005244 Msa0732100:intron 30.0%
! TTCTGTTCTTTTCCAAAATC+TGG - chr5_1:44005274-44005293 Msa0732100:intron 30.0%
!!! AGGATATTTTAGTAACGCAT+AGG - chr5_1:44005360-44005379 Msa0732100:intron 30.0%
TAGAAATCTTCCTTGTATGT+TGG - chr5_1:44005491-44005510 Msa0732100:intron 30.0%
!! TATCCATTTTTCAGTTGAAG+AGG + chr5_1:44005614-44005633 None:intergenic 30.0%
! AAGCTTTATGAAATGATCCA+TGG - chr5_1:44005683-44005702 Msa0732100:intron 30.0%
TTTATGAAATGATCCATGGT+TGG - chr5_1:44005687-44005706 Msa0732100:intron 30.0%
TACATGATCATGTTAGTGAA+GGG + chr5_1:44005740-44005759 None:intergenic 30.0%
TTACATGATCATGTTAGTGA+AGG + chr5_1:44005741-44005760 None:intergenic 30.0%
!! AATTTTTGTTGTGGATCAGT+GGG - chr5_1:44005768-44005787 Msa0732100:intron 30.0%
ATCGTGATTGCAAAAAATAG+TGG - chr5_1:44005967-44005986 Msa0732100:intron 30.0%
TTGTCAAATAGCTGTTATTG+TGG + chr5_1:44006011-44006030 None:intergenic 30.0%
TTTCACAAAATTGAGTACCT+TGG - chr5_1:44006486-44006505 Msa0732100:intron 30.0%
TTCACAAAATTGAGTACCTT+GGG - chr5_1:44006487-44006506 Msa0732100:intron 30.0%
GGGACAAAAAATTAACTATG+AGG - chr5_1:44006507-44006526 Msa0732100:intron 30.0%
CAACTTAATGAGAAGAGATA+TGG + chr5_1:44006716-44006735 None:intergenic 30.0%
GCAAAACCTATATTGAAGAA+TGG - chr5_1:44006769-44006788 Msa0732100:five_prime_UTR 30.0%
AAAACAAAAGAGTGAAACTC+TGG + chr5_1:44006796-44006815 None:intergenic 30.0%
TGTCTTTCTTTGTCTTTGGA+AGG + chr5_1:44001573-44001592 None:intergenic 35.0%
! TTGGTGTCTTTCTTTGTCTT+TGG + chr5_1:44001577-44001596 None:intergenic 35.0%
TAACAATTTGGTCGTAGCAA+TGG - chr5_1:44001601-44001620 Msa0732100:intron 35.0%
AACAATTTGGTCGTAGCAAT+GGG - chr5_1:44001602-44001621 Msa0732100:intron 35.0%
!!! CTGGTTGAAGTTGTTGTTTT+TGG + chr5_1:44001689-44001708 None:intergenic 35.0%
ACACTACAATGTCCTTTCTT+AGG - chr5_1:44001757-44001776 Msa0732100:three_prime_UTR 35.0%
AGGTGTACATATTATGGGAA+TGG - chr5_1:44001777-44001796 Msa0732100:exon 35.0%
TCAATGTATGTCTGGATTGA+CGG - chr5_1:44001861-44001880 Msa0732100:CDS 35.0%
AATGGTTCTTACCAAACCAA+TGG + chr5_1:44002154-44002173 None:intergenic 35.0%
! TTGGCCACTTTGATAAATAG+AGG - chr5_1:44002309-44002328 Msa0732100:intron 35.0%
GCGAAAGAGATGTTTGATAT+TGG - chr5_1:44002369-44002388 Msa0732100:intron 35.0%
CAGACAATGTTTCAGAAAAG+TGG + chr5_1:44002450-44002469 None:intergenic 35.0%
TCTAATAATGTGAGTCCTCA+CGG - chr5_1:44002477-44002496 Msa0732100:CDS 35.0%
! ACTCATTGAGCCGTATTTTA+AGG + chr5_1:44002509-44002528 None:intergenic 35.0%
CCATAAAGTCTCAAACTGTT+TGG + chr5_1:44002578-44002597 None:intergenic 35.0%
! CCAAACAGTTTGAGACTTTA+TGG - chr5_1:44002575-44002594 Msa0732100:intron 35.0%
GTAGTCACTAATTGAAGCTA+AGG - chr5_1:44002608-44002627 Msa0732100:intron 35.0%
AGTCACTAATTGAAGCTAAG+GGG - chr5_1:44002610-44002629 Msa0732100:intron 35.0%
!! CAGAAAGTCTTGTGTTACTT+AGG + chr5_1:44002759-44002778 None:intergenic 35.0%
CTAAGTAACACAAGACTTTC+TGG - chr5_1:44002757-44002776 Msa0732100:intron 35.0%
TTTGATCTCAACCAATTGTG+AGG - chr5_1:44002883-44002902 Msa0732100:intron 35.0%
CAAATAAATCAGCAGCTTCT+TGG + chr5_1:44003117-44003136 None:intergenic 35.0%
!! CTGCAAAGAGTTATTGACTT+TGG + chr5_1:44003208-44003227 None:intergenic 35.0%
ATAGTTGCGGAACCAAAATA+TGG + chr5_1:44003278-44003297 None:intergenic 35.0%
! CTTTGTTTGTAAGCTTGTGA+TGG - chr5_1:44003386-44003405 Msa0732100:CDS 35.0%
TTCGTGAGTTCTACTATTCT+AGG + chr5_1:44003417-44003436 None:intergenic 35.0%
TGGTTAAGTGCCAAAATCAA+TGG + chr5_1:44003579-44003598 None:intergenic 35.0%
GATTATGCAAAATCGTCTCT+TGG + chr5_1:44003676-44003695 None:intergenic 35.0%
GACGCTATATACAGCAATAA+AGG - chr5_1:44004165-44004184 Msa0732100:intron 35.0%
TTGCATTTACTGAATGGTTG+TGG - chr5_1:44004202-44004221 Msa0732100:intron 35.0%
! CGATGCTTTGACTTATGATA+AGG - chr5_1:44004350-44004369 Msa0732100:CDS 35.0%
AAGTTTGTAGGCAACGAAAA+CGG - chr5_1:44004450-44004469 Msa0732100:intron 35.0%
TAAGTAGACCTGAAAACAAG+GGG - chr5_1:44004861-44004880 Msa0732100:intron 35.0%
! TGCAGCCTTGAATTTTATAG+AGG - chr5_1:44004889-44004908 Msa0732100:intron 35.0%
ATGAGATCTGCATAGGAAAT+AGG + chr5_1:44004953-44004972 None:intergenic 35.0%
AAGAATAGGCTAGAAGTTGT+AGG - chr5_1:44005088-44005107 Msa0732100:intron 35.0%
TACACTGCATATGGATCAAA+TGG - chr5_1:44005234-44005253 Msa0732100:intron 35.0%
TCACTAGATGTATTCTTTGC+CGG - chr5_1:44005397-44005416 Msa0732100:intron 35.0%
TATAACTCATTCCCTTTCAC+TGG - chr5_1:44005458-44005477 Msa0732100:intron 35.0%
!! AAACTCTAAAGCCAGTGAAA+GGG + chr5_1:44005472-44005491 None:intergenic 35.0%
!! TAAACTCTAAAGCCAGTGAA+AGG + chr5_1:44005473-44005492 None:intergenic 35.0%
CTTGTGAATATTTCCAACCA+TGG + chr5_1:44005703-44005722 None:intergenic 35.0%
! AACACGTCCAATTTTTGTTG+TGG - chr5_1:44005759-44005778 Msa0732100:intron 35.0%
CACTGATCCACAACAAAAAT+TGG + chr5_1:44005769-44005788 None:intergenic 35.0%
!! CAATTTTTGTTGTGGATCAG+TGG - chr5_1:44005767-44005786 Msa0732100:intron 35.0%
!! ATTTTTGTTGTGGATCAGTG+GGG - chr5_1:44005769-44005788 Msa0732100:intron 35.0%
! AAATTTTCAGCAGTAGGCTT+TGG - chr5_1:44005892-44005911 Msa0732100:intron 35.0%
!! GATAAAATATGGGAAGTACC+TGG + chr5_1:44005924-44005943 None:intergenic 35.0%
GACAACACTGTACTAAATAG+CGG - chr5_1:44006026-44006045 Msa0732100:intron 35.0%
TCTCTGTTTATTTGGATAGC+TGG - chr5_1:44006225-44006244 Msa0732100:CDS 35.0%
CATGGGTACAAAAATACCAA+CGG - chr5_1:44006323-44006342 Msa0732100:intron 35.0%
!! CTTGGTTTGTTATCTTTCTC+AGG - chr5_1:44006447-44006466 Msa0732100:intron 35.0%
! GGTACTCAATTTTGTGAAAG+TGG + chr5_1:44006485-44006504 None:intergenic 35.0%
TGAAATTGAAGGTTTGTCCT+GGG + chr5_1:44006616-44006635 None:intergenic 35.0%
TTGAAATTGAAGGTTTGTCC+TGG + chr5_1:44006617-44006636 None:intergenic 35.0%
!! CAACTTTTTCTTTTGGCAAG+AGG + chr5_1:44006747-44006766 None:intergenic 35.0%
TCTGGTCCATTCTTCAATAT+AGG + chr5_1:44006778-44006797 None:intergenic 35.0%
AAGGAAGAGTTGAGATTGAG+AGG + chr5_1:44001637-44001656 None:intergenic 40.0%
AACCTCGTTCAGTAAGTGTT+TGG - chr5_1:44001714-44001733 Msa0732100:three_prime_UTR 40.0%
AACCAAACACTTACTGAACG+AGG + chr5_1:44001719-44001738 None:intergenic 40.0%
! ACCATTCTGATTCTTTGGAG+TGG - chr5_1:44002168-44002187 Msa0732100:intron 40.0%
ACCACTCCAAAGAATCAGAA+TGG + chr5_1:44002172-44002191 None:intergenic 40.0%
!! TTCTGATTCTTTGGAGTGGT+TGG - chr5_1:44002172-44002191 Msa0732100:intron 40.0%
AAATACGGCTCAATGAGTTG+TGG - chr5_1:44002511-44002530 Msa0732100:CDS 40.0%
AAGCAGGCAATACCTCATAA+AGG + chr5_1:44002642-44002661 None:intergenic 40.0%
!! TTATGAGGTATTGCCTGCTT+TGG - chr5_1:44002642-44002661 Msa0732100:intron 40.0%
GCTCACATAAAAACCAAAGC+AGG + chr5_1:44002658-44002677 None:intergenic 40.0%
AATTGTGTCCGTAGTTGGTT+CGG + chr5_1:44002787-44002806 None:intergenic 40.0%
TGGTTAATTGTGTCCGTAGT+TGG + chr5_1:44002792-44002811 None:intergenic 40.0%
GGAAAAGAGAACATGCTCAT+GGG - chr5_1:44002843-44002862 Msa0732100:intron 40.0%
! ATGCTCATGGGCTTTTATAC+TGG - chr5_1:44002855-44002874 Msa0732100:intron 40.0%
!! TTGGTATGAGAGTGTTTGCT+AGG + chr5_1:44002983-44003002 None:intergenic 40.0%
CATACCAAACTCTAACTCAC+AGG - chr5_1:44002995-44003014 Msa0732100:intron 40.0%
ATAAATCAGCAGCTTCTTGG+AGG + chr5_1:44003114-44003133 None:intergenic 40.0%
GTTCCGCAACTATCTTTGAA+GGG - chr5_1:44003285-44003304 Msa0732100:intron 40.0%
GATCCCTTCAAAGATAGTTG+CGG + chr5_1:44003291-44003310 None:intergenic 40.0%
ACAACTCGTCTTCTTGGATT+TGG - chr5_1:44003436-44003455 Msa0732100:CDS 40.0%
!! TCTTGGATTTGGCTCTTCTA+AGG - chr5_1:44003447-44003466 Msa0732100:CDS 40.0%
!! CTTGGATTTGGCTCTTCTAA+GGG - chr5_1:44003448-44003467 Msa0732100:CDS 40.0%
!! TTGGATTTGGCTCTTCTAAG+GGG - chr5_1:44003449-44003468 Msa0732100:CDS 40.0%
TATTAGGTCAGCAGCATTAG+CGG + chr5_1:44004007-44004026 None:intergenic 40.0%
!! GCTGACTTGCATTTACTGAA+TGG - chr5_1:44004196-44004215 Msa0732100:intron 40.0%
TCGGAATTCTATTCTCTAGC+TGG + chr5_1:44004246-44004265 None:intergenic 40.0%
TCGACGTTTGATATCTCTTC+AGG - chr5_1:44004284-44004303 Msa0732100:intron 40.0%
AGAATGGATGGAGTAAGATC+AGG + chr5_1:44004315-44004334 None:intergenic 40.0%
TACTCCATCCATTCTAACAC+TGG - chr5_1:44004320-44004339 Msa0732100:CDS 40.0%
! GTTTAGAGCCAGTGTTAGAA+TGG + chr5_1:44004331-44004350 None:intergenic 40.0%
AGTTTGTAGGCAACGAAAAC+GGG - chr5_1:44004451-44004470 Msa0732100:intron 40.0%
TGAACCGGATAGAACCATTT+GGG + chr5_1:44004480-44004499 None:intergenic 40.0%
GCTATAGGCTATAGACATAG+CGG + chr5_1:44004655-44004674 None:intergenic 40.0%
ATAGGAAATAGGTCCACCTT+TGG + chr5_1:44004942-44004961 None:intergenic 40.0%
ATACTGGATGAGATCTGCAT+AGG + chr5_1:44004960-44004979 None:intergenic 40.0%
GAAATGTTCAACCTGCATAC+TGG + chr5_1:44004976-44004995 None:intergenic 40.0%
TGTAGCACAAAGTGCAACAA+AGG - chr5_1:44005149-44005168 Msa0732100:intron 40.0%
TGCATATGGATCAAATGGAC+AGG - chr5_1:44005239-44005258 Msa0732100:intron 40.0%
GGCAAAGAATACATCTAGTG+AGG + chr5_1:44005398-44005417 None:intergenic 40.0%
GCACCTCTTCAACTGAAAAA+TGG - chr5_1:44005608-44005627 Msa0732100:intron 40.0%
! GGTTTGTTCGATAGGCAATT+TGG - chr5_1:44005790-44005809 Msa0732100:intron 40.0%
TGTTCGATAGGCAATTTGGT+AGG - chr5_1:44005794-44005813 Msa0732100:intron 40.0%
AGAGGGGAGAATTCCAATTT+GGG - chr5_1:44005840-44005859 Msa0732100:intron 40.0%
ACACTTGCTTTCTCCCAAAT+TGG + chr5_1:44005856-44005875 None:intergenic 40.0%
ACATTCAATGCTGTCAATCG+CGG + chr5_1:44006193-44006212 None:intergenic 40.0%
GCTGTGTTGTCTGCATTTAT+AGG - chr5_1:44006247-44006266 Msa0732100:CDS 40.0%
ATCTGGATCAGATGCCAATA+AGG + chr5_1:44006296-44006315 None:intergenic 40.0%
!! CGTTGGTATTTTTGTACCCA+TGG + chr5_1:44006325-44006344 None:intergenic 40.0%
AAATTGAAGGTTTGTCCTGG+GGG + chr5_1:44006614-44006633 None:intergenic 40.0%
GAAATTGAAGGTTTGTCCTG+GGG + chr5_1:44006615-44006634 None:intergenic 40.0%
! TTGTCTTTGGAAGGAGAGAG+AGG + chr5_1:44001564-44001583 None:intergenic 45.0%
AATGAGAACCACCAAGTGGA+TGG + chr5_1:44001664-44001683 None:intergenic 45.0%
GGATAATGAGAACCACCAAG+TGG + chr5_1:44001668-44001687 None:intergenic 45.0%
TACTGAACGAGGTTCATGTC+TGG + chr5_1:44001708-44001727 None:intergenic 45.0%
! AAATGCATTGGCGTGACCAT+TGG - chr5_1:44002135-44002154 Msa0732100:intron 45.0%
AGACCTGCAATGCAGAGAAT+TGG - chr5_1:44002290-44002309 Msa0732100:intron 45.0%
GCAATACCTCATAAAGGTGG+TGG + chr5_1:44002636-44002655 None:intergenic 45.0%
CAGGCAATACCTCATAAAGG+TGG + chr5_1:44002639-44002658 None:intergenic 45.0%
GGGAAAAGAGAACATGCTCA+TGG - chr5_1:44002842-44002861 Msa0732100:intron 45.0%
! AACTAGCTTGGAGAGCTACA+TGG + chr5_1:44002949-44002968 None:intergenic 45.0%
! GGAGGTTAGAGCTTGTTTGA+AGG + chr5_1:44003096-44003115 None:intergenic 45.0%
ACATATTCCAGCCTCTCAAG+TGG - chr5_1:44003149-44003168 Msa0732100:CDS 45.0%
TCTACATAGAGCCACTTGAG+AGG + chr5_1:44003163-44003182 None:intergenic 45.0%
GGTTCCGCAACTATCTTTGA+AGG - chr5_1:44003284-44003303 Msa0732100:intron 45.0%
TCACGAACAACTCGTCTTCT+TGG - chr5_1:44003430-44003449 Msa0732100:CDS 45.0%
AGCAAGTGATGCACTCTAGT+TGG + chr5_1:44003599-44003618 None:intergenic 45.0%
GAGTGCATCACTTGCTTTAG+AGG - chr5_1:44003603-44003622 Msa0732100:intron 45.0%
GGTCAGTTGCATCTGTTTGT+AGG - chr5_1:44003948-44003967 Msa0732100:intron 45.0%
TAGGAGTCGATATCAAGCTC+TGG - chr5_1:44003967-44003986 Msa0732100:intron 45.0%
AGAGCCAGTGTTAGAATGGA+TGG + chr5_1:44004327-44004346 None:intergenic 45.0%
CTGAACCGGATAGAACCATT+TGG + chr5_1:44004481-44004500 None:intergenic 45.0%
! CAAATGGTTCTATCCGGTTC+AGG - chr5_1:44004479-44004498 Msa0732100:intron 45.0%
GCTTCTGCAATTCGCAAATG+CGG - chr5_1:44005183-44005202 Msa0732100:intron 45.0%
! ATCAGTGGGGTTTGTTCGAT+AGG - chr5_1:44005782-44005801 Msa0732100:intron 45.0%
CAAATTGGAATTCTCCCCTC+TGG + chr5_1:44005841-44005860 None:intergenic 45.0%
CAGAGGGGAGAATTCCAATT+TGG - chr5_1:44005839-44005858 Msa0732100:intron 45.0%
TTGGGAGAAAGCAAGTGTTC+AGG - chr5_1:44005858-44005877 Msa0732100:intron 45.0%
TCGCGGATCACAGAAAATTG+AGG + chr5_1:44006176-44006195 None:intergenic 45.0%
TGCATTTATAGGTCCTGACC+AGG - chr5_1:44006258-44006277 Msa0732100:CDS 45.0%
ATAAGGTCTCTGTTGCATCC+TGG + chr5_1:44006279-44006298 None:intergenic 45.0%
GGATGCAACAGAGACCTTAT+TGG - chr5_1:44006279-44006298 Msa0732100:CDS 45.0%
TGATCCAGATGTTGCTCCAT+GGG - chr5_1:44006306-44006325 Msa0732100:intron 45.0%
!! TGTCTCTCGTACCGATTATG+AGG - chr5_1:44006357-44006376 Msa0732100:intron 45.0%
GTAATGTCGATCTTCTTGCG+AGG + chr5_1:44006544-44006563 None:intergenic 45.0%
CTTCCTTCTCTCCATCCACT+TGG - chr5_1:44001650-44001669 Msa0732100:three_prime_UTR 50.0%
! CATTGGCGTGACCATTGGTT+TGG - chr5_1:44002140-44002159 Msa0732100:intron 50.0%
TGGCCAATTCTCTGCATTGC+AGG + chr5_1:44002296-44002315 None:intergenic 50.0%
CTGGTGTACCGAACCAACTA+CGG - chr5_1:44002776-44002795 Msa0732100:intron 50.0%
! AGAGTGTTTGCTAGGAGCTG+TGG + chr5_1:44002975-44002994 None:intergenic 50.0%
CCAGCCTGTGAGTTAGAGTT+TGG + chr5_1:44003002-44003021 None:intergenic 50.0%
CCAAACTCTAACTCACAGGC+TGG - chr5_1:44002999-44003018 Msa0732100:intron 50.0%
AGCGCTGTCTGCGTTCTATT+AGG + chr5_1:44004023-44004042 None:intergenic 50.0%
TTGTAGGCAACGAAAACGGG+TGG - chr5_1:44004454-44004473 Msa0732100:intron 50.0%
! GTGGCCCAAATGGTTCTATC+CGG - chr5_1:44004473-44004492 Msa0732100:intron 50.0%
!!! GCAGAAAGCCCCTTGTTTTC+AGG + chr5_1:44004872-44004891 None:intergenic 50.0%
GCAGATCTCATCCAGTATGC+AGG - chr5_1:44004962-44004981 Msa0732100:intron 50.0%
TCTGCAATTCGCAAATGCGG+TGG - chr5_1:44005186-44005205 Msa0732100:intron 50.0%
TCGCAAATGCGGTGGAAATG+AGG - chr5_1:44005194-44005213 Msa0732100:intron 50.0%
TGCGGTGGAAATGAGGAGAA+AGG - chr5_1:44005201-44005220 Msa0732100:intron 50.0%
GCGGTGGAAATGAGGAGAAA+GGG - chr5_1:44005202-44005221 Msa0732100:intron 50.0%
TGGTAGGACTGATACTGACG+AGG - chr5_1:44005810-44005829 Msa0732100:intron 50.0%
!! AATATGGGAAGTACCTGGCG+AGG + chr5_1:44005919-44005938 None:intergenic 50.0%
CTGATCCAGATGTTGCTCCA+TGG - chr5_1:44006305-44006324 Msa0732100:intron 50.0%
TGTACCCATGGAGCAACATC+TGG + chr5_1:44006313-44006332 None:intergenic 50.0%
CCACCAAGTGGATGGAGAGA+AGG + chr5_1:44001656-44001675 None:intergenic 55.0%
CCTTCTCTCCATCCACTTGG+TGG - chr5_1:44001653-44001672 Msa0732100:three_prime_UTR 55.0%
AAGGGGCCACCACCTTTATG+AGG - chr5_1:44002627-44002646 Msa0732100:intron 55.0%
GAGCTGTGGCGTAACTAGCT+TGG + chr5_1:44002961-44002980 None:intergenic 55.0%
CATAGAGCCACTTGAGAGGC+TGG + chr5_1:44003159-44003178 None:intergenic 55.0%
!! TCAAGCTCTGGATCGCTCCT+TGG - chr5_1:44003979-44003998 Msa0732100:intron 55.0%
CAGCAGCATTAGCGGTTCCA+AGG + chr5_1:44003999-44004018 None:intergenic 55.0%
ACGAAAACGGGTGGCCCAAA+TGG - chr5_1:44004463-44004482 Msa0732100:intron 55.0%
TACTGACGAGGCAGATCCAG+AGG - chr5_1:44005822-44005841 Msa0732100:intron 55.0%
ACTGACGAGGCAGATCCAGA+GGG - chr5_1:44005823-44005842 Msa0732100:intron 55.0%
GTCTCTGTTGCATCCTGGTC+AGG + chr5_1:44006274-44006293 None:intergenic 55.0%
CGGTACGAGAGACAGTTTCG+CGG + chr5_1:44006351-44006370 None:intergenic 55.0%
TGAAGGTTTGTCCTGGGGGA+AGG + chr5_1:44006610-44006629 None:intergenic 55.0%
CTGACGAGGCAGATCCAGAG+GGG - chr5_1:44005824-44005843 Msa0732100:intron 60.0%
! AGTAGGCTTTGGTCCTCGCC+AGG - chr5_1:44005903-44005922 Msa0732100:intron 60.0%
AGACAGTTTCGCGGCTCCGT+TGG + chr5_1:44006342-44006361 None:intergenic 60.0%
CATGCTCACTTCCTTCCCCC+AGG - chr5_1:44006596-44006615 Msa0732100:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 44001522 44006844 44001522 ID=Msa0732100;Name=Msa0732100
chr5_1 mRNA 44001522 44006844 44001522 ID=Msa0732100-mRNA-1;Parent=Msa0732100;Name=Msa0732100-mRNA-1;_AED=0.17;_eAED=0.17;_QI=98|1|1|1|0.90|0.83|12|234|353
chr5_1 exon 44001522 44001602 44001522 ID=Msa0732100-mRNA-1:exon:12534;Parent=Msa0732100-mRNA-1
chr5_1 exon 44001634 44001897 44001634 ID=Msa0732100-mRNA-1:exon:12533;Parent=Msa0732100-mRNA-1
chr5_1 exon 44001988 44002122 44001988 ID=Msa0732100-mRNA-1:exon:12532;Parent=Msa0732100-mRNA-1
chr5_1 exon 44002442 44002579 44002442 ID=Msa0732100-mRNA-1:exon:12531;Parent=Msa0732100-mRNA-1
chr5_1 exon 44003106 44003212 44003106 ID=Msa0732100-mRNA-1:exon:12530;Parent=Msa0732100-mRNA-1
chr5_1 exon 44003383 44003513 44003383 ID=Msa0732100-mRNA-1:exon:12529;Parent=Msa0732100-mRNA-1
chr5_1 exon 44003866 44003906 44003866 ID=Msa0732100-mRNA-1:exon:12528;Parent=Msa0732100-mRNA-1
chr5_1 exon 44003995 44004060 44003995 ID=Msa0732100-mRNA-1:exon:12527;Parent=Msa0732100-mRNA-1
chr5_1 exon 44004180 44004214 44004180 ID=Msa0732100-mRNA-1:exon:12526;Parent=Msa0732100-mRNA-1
chr5_1 exon 44004312 44004396 44004312 ID=Msa0732100-mRNA-1:exon:12525;Parent=Msa0732100-mRNA-1
chr5_1 exon 44006205 44006312 44006205 ID=Msa0732100-mRNA-1:exon:12524;Parent=Msa0732100-mRNA-1
chr5_1 exon 44006642 44006844 44006642 ID=Msa0732100-mRNA-1:exon:12523;Parent=Msa0732100-mRNA-1
chr5_1 five_prime_UTR 44006747 44006844 44006747 ID=Msa0732100-mRNA-1:five_prime_utr;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44006642 44006746 44006642 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44006205 44006312 44006205 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44004312 44004396 44004312 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44004180 44004214 44004180 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44003995 44004060 44003995 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44003866 44003906 44003866 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44003383 44003513 44003383 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44003106 44003212 44003106 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44002442 44002579 44002442 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44001988 44002122 44001988 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 CDS 44001787 44001897 44001787 ID=Msa0732100-mRNA-1:cds;Parent=Msa0732100-mRNA-1
chr5_1 three_prime_UTR 44001634 44001786 44001634 ID=Msa0732100-mRNA-1:three_prime_utr;Parent=Msa0732100-mRNA-1
chr5_1 three_prime_UTR 44001522 44001602 44001522 ID=Msa0732100-mRNA-1:three_prime_utr;Parent=Msa0732100-mRNA-1
Gene Sequence

>Msa0732100

ATGGGTGTCTCATTCCTCTCAATCTCAACTCTTCCTTCTCTCCATCCACTTGGTGGTTCTCATTATCCAAAAACAACAACTTCAACCAGACATGAACCTCGTTCAGTGTCCATTTGCTGTACAAAAATCAAAACTGATGTTAGTGATGAAGAAGAACAGTTCAATTGGAGACGAAGAGATGTTCTTAAATGCATTGGCGTGACCATTGGTTTGGAGTCGATATCAAGCTCTGGATCGCTCCTTGGAACCGCTAATGCTGCTGACCTAATAGAACGCAGACAGCGCTCTGAATTTCAGTCTCAAATTAAAGGGACGCTATATACAGCAATAAAGGCAAATCCTGATCTTACTCCATCCATTCTAACACTGGCTCTAAACGATGCTTTGACTTATGATAAGGCAACGAAAACGGGTGGCCCAAATGGTTCTATCCGGTTCAGCTCAGAAATAAGTAGACCTGAAAACAAGGGGCTTTCTGCAGCCTTGAATTTTATAGAGGAAGCAAAAAAAGAGATAGATTCATATTCCAAAGGTGGACCTATTTCCTATGCAGATCTCATCCAGTATGCAGCACAAAGTGCAACAAAGGCTCAATTTTTAGCTTCTGCAATTCGCAAATGCGGTGGAAATGAGGAGAAAGGGAATTTACTCTACACTGCATATGGATCAAATGGACAGTGGGGTTTGTTCGATAGGCAATTTGGTAGGACTGATACTGACGAGGCAGATCCAGAGGGGAGAATTCCAATTTGGGAGAAAGCAAGTGTTCAGGAAATGAAAGATAAATTTTCAGCAGTAGGCTTTGGTCCTCGCCAGCTGGCTGTGTTGTCTGCATTTATAGGTCCTGACCAGGATGCAACAGAGACCTTATTGGCATCTGATCCAGATGTTGCTCCATGGGTACAAAAATACCAACGGAGCCGCGAAACTGTCTCTCGTACCGATTATGAGGTTGATCTGATAACCACTTTCACAAAATTGAGTACCTTGGGACAAAAAATTAACTATGAGGCATATACATATCCTCGCAAGAAGATCGACATTACCAAACTCAAGTTGTAA

Protein sequence

>Msa0732100

MGVSFLSISTLPSLHPLGGSHYPKTTTSTRHEPRSVSICCTKIKTDVSDEEEQFNWRRRDVLKCIGVTIGLESISSSGSLLGTANAADLIERRQRSEFQSQIKGTLYTAIKANPDLTPSILTLALNDALTYDKATKTGGPNGSIRFSSEISRPENKGLSAALNFIEEAKKEIDSYSKGGPISYADLIQYAAQSATKAQFLASAIRKCGGNEEKGNLLYTAYGSNGQWGLFDRQFGRTDTDEADPEGRIPIWEKASVQEMKDKFSAVGFGPRQLAVLSAFIGPDQDATETLLASDPDVAPWVQKYQRSRETVSRTDYEVDLITTFTKLSTLGQKINYEAYTYPRKKIDITKLKL*