Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859510 | Q09134.1 | 77.465 | 71 | 1 | 1 | 15 | 70 | 1 | 71 | 1.26e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859510 | sp|Q09134|GRPA_MEDSF | 77.465 | 71 | 1 | 1 | 15 | 70 | 1 | 71 | 1.58e-23 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859510 | G7K7E3 | 94.595 | 37 | 2 | 0 | 1 | 37 | 1 | 37 | 3.04e-14 | 73.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609790 | Msa0859510 | 0.811260 | 7.653343e-51 | -8.615850e-47 |
| Msa0636720 | Msa0859510 | 0.808986 | 2.364815e-50 | -8.615850e-47 |
| Msa0732100 | Msa0859510 | 0.817650 | 2.954594e-52 | -8.615850e-47 |
| Msa0738870 | Msa0859510 | 0.812339 | 4.456035e-51 | -8.615850e-47 |
| Msa0738880 | Msa0859510 | 0.861423 | 1.036692e-63 | -8.615850e-47 |
| Msa0738890 | Msa0859510 | 0.844521 | 7.179804e-59 | -8.615850e-47 |
| Msa0738900 | Msa0859510 | 0.805033 | 1.622895e-49 | -8.615850e-47 |
| Msa0740350 | Msa0859510 | -0.811931 | 5.468204e-51 | -8.615850e-47 |
| Msa0783280 | Msa0859510 | 0.828953 | 6.748181e-55 | -8.615850e-47 |
| Msa0819320 | Msa0859510 | 0.845660 | 3.535850e-59 | -8.615850e-47 |
| Msa0819330 | Msa0859510 | 0.821822 | 3.291164e-53 | -8.615850e-47 |
| Msa0819360 | Msa0859510 | 0.839892 | 1.207531e-57 | -8.615850e-47 |
| Msa0819370 | Msa0859510 | 0.856878 | 2.387464e-62 | -8.615850e-47 |
| Msa0819380 | Msa0859510 | 0.828921 | 6.871330e-55 | -8.615850e-47 |
| Msa0179800 | Msa0859510 | -0.805985 | 1.024573e-49 | -8.615850e-47 |
| Msa0216210 | Msa0859510 | 0.828189 | 1.032231e-54 | -8.615850e-47 |
| Msa0441670 | Msa0859510 | 0.805519 | 1.283449e-49 | -8.615850e-47 |
| Msa0444340 | Msa0859510 | 0.819505 | 1.121412e-52 | -8.615850e-47 |
| Msa0467800 | Msa0859510 | 0.809086 | 2.251399e-50 | -8.615850e-47 |
| Msa0467880 | Msa0859510 | 0.811685 | 6.186464e-51 | -8.615850e-47 |
| Msa0472270 | Msa0859510 | 0.852327 | 4.966123e-61 | -8.615850e-47 |
| Msa0261440 | Msa0859510 | 0.857814 | 1.263131e-62 | -8.615850e-47 |
| Msa0284260 | Msa0859510 | 0.819267 | 1.270657e-52 | -8.615850e-47 |
| Msa0296000 | Msa0859510 | 0.804109 | 2.529503e-49 | -8.615850e-47 |
| Msa0363940 | Msa0859510 | 0.801793 | 7.614476e-49 | -8.615850e-47 |
| Msa0525270 | Msa0859510 | 0.808895 | 2.473973e-50 | -8.615850e-47 |
| Msa0525280 | Msa0859510 | 0.800735 | 1.253654e-48 | -8.615850e-47 |
| Msa0557490 | Msa0859510 | 0.808078 | 3.694997e-50 | -8.615850e-47 |
| Msa0850740 | Msa0859510 | 0.803416 | 3.522341e-49 | -8.615850e-47 |
| Msa0859490 | Msa0859510 | 0.850641 | 1.488963e-60 | -8.615850e-47 |
| Msa0859510 | Msa0859520 | 0.856089 | 4.071403e-62 | -8.615850e-47 |
| Msa0859510 | Msa0859530 | 0.815113 | 1.091616e-51 | -8.615850e-47 |
| Msa0859510 | Msa0926860 | 0.802019 | 6.843908e-49 | -8.615850e-47 |
| Msa0859510 | Msa0929820 | 0.811462 | 6.916650e-51 | -8.615850e-47 |
| Msa0859510 | Msa0992570 | 0.808553 | 2.926943e-50 | -8.615850e-47 |
| Msa0859510 | Msa1030870 | 0.854868 | 9.240595e-62 | -8.615850e-47 |
| Msa0859510 | Msa1061310 | 0.853255 | 2.697165e-61 | -8.615850e-47 |
| Msa0859510 | Msa1111920 | 0.833180 | 6.183953e-56 | -8.615850e-47 |
| Msa0859510 | Msa1149960 | 0.814249 | 1.696367e-51 | -8.615850e-47 |
| Msa0859510 | Msa1229640 | 0.803795 | 2.939392e-49 | -8.615850e-47 |
| Msa0859510 | Msa1272340 | 0.808208 | 3.466565e-50 | -8.615850e-47 |
| Msa0859510 | Msa1411830 | 0.832434 | 9.475714e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859510 | MtrunA17_Chr5g0438511 | 94.595 | 37 | 2 | 0 | 1 | 37 | 1 | 37 | 5.85e-18 | 73.6 |
| Msa0859510 | MtrunA17_Chr5g0438501 | 83.721 | 43 | 7 | 0 | 1 | 43 | 1 | 43 | 8.42e-18 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTACCTCTGATGCCAAAA+AGG | 0.253882 | 5_4:+57836448 | Msa0859510:CDS |
| TGTTGTTCAAATGTGATATT+TGG | 0.286787 | 5_4:-57836336 | None:intergenic |
| AATCCTCATGCTAGGCCTTT+TGG | 0.301450 | 5_4:+57836376 | Msa0859510:CDS |
| AGGACCTTTACTTGGTAGTT+GGG | 0.435144 | 5_4:-57836245 | None:intergenic |
| AAGGACCTTTACTTGGTAGT+TGG | 0.435306 | 5_4:-57836246 | None:intergenic |
| TATATATAATTGAGGGAAGA+AGG | 0.452840 | 5_4:-57836276 | None:intergenic |
| TATCTATCTATACTATATAG+TGG | 0.463085 | 5_4:-57837123 | None:intergenic |
| GAGATGTAAGGACCTTTACT+TGG | 0.489102 | 5_4:-57836253 | None:intergenic |
| GGCGGTTACAACGGTGGAGG+CGG | 0.493077 | 5_4:+57836857 | Msa0859510:CDS |
| GGCTACAATCATGGTGGAGG+CGG | 0.510473 | 5_4:+57836839 | Msa0859510:CDS |
| GGCGGTTACAACCACGGTGG+AGG | 0.517721 | 5_4:+57836875 | Msa0859510:CDS |
| ATATCACATTTGAACAACAA+TGG | 0.533319 | 5_4:+57836340 | Msa0859510:exon |
| CGTGCTCTATATATAATTGA+GGG | 0.534196 | 5_4:-57836283 | None:intergenic |
| GAGGGAAGAAGGGAGATGTA+AGG | 0.535360 | 5_4:-57836265 | None:intergenic |
| TAAGAAGAACCATAGCCAAA+AGG | 0.537969 | 5_4:-57836391 | None:intergenic |
| GCGTGCTCTATATATAATTG+AGG | 0.539067 | 5_4:-57836284 | None:intergenic |
| AATGGTGGAGGCTACAATCA+TGG | 0.542903 | 5_4:+57836830 | Msa0859510:CDS |
| GGAGGCGGTTACAACGGTGG+AGG | 0.550486 | 5_4:+57836854 | Msa0859510:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5_4:+57836803 | Msa0859510:CDS |
| TTCCTCAGAAGTCTCAGCTA+GGG | 0.554700 | 5_4:+57836415 | Msa0859510:CDS |
| CCTTTACTTGGTAGTTGGGA+AGG | 0.556036 | 5_4:-57836241 | None:intergenic |
| GGTGGTTACAACCATGGTGG+AGG | 0.556342 | 5_4:+57836800 | Msa0859510:intron |
| TTTCCTCAGAAGTCTCAGCT+AGG | 0.560253 | 5_4:+57836414 | Msa0859510:CDS |
| GGTTACAACCACGGTGGAGG+AGG | 0.575359 | 5_4:+57836878 | Msa0859510:CDS |
| ATATATAATTGAGGGAAGAA+GGG | 0.580357 | 5_4:-57836275 | None:intergenic |
| CCTTCCCAACTACCAAGTAA+AGG | 0.580733 | 5_4:+57836241 | Msa0859510:five_prime_UTR |
| GGAGGCTACAATCATGGTGG+AGG | 0.593331 | 5_4:+57836836 | Msa0859510:CDS |
| CATGGTGGAGGTGGTTACAA+TGG | 0.597788 | 5_4:+57836812 | Msa0859510:CDS |
| CATGGTGGAGGCGGTTACAA+CGG | 0.600447 | 5_4:+57836848 | Msa0859510:CDS |
| GGAGGTGGTTACAATGGTGG+AGG | 0.607304 | 5_4:+57836818 | Msa0859510:CDS |
| GGTGGAGGCGGTTACAACGG+TGG | 0.622941 | 5_4:+57836851 | Msa0859510:CDS |
| TAGCCAAAAGGCCTAGCATG+AGG | 0.641377 | 5_4:-57836379 | None:intergenic |
| GGTGGAGGTGGTTACAATGG+TGG | 0.643094 | 5_4:+57836815 | Msa0859510:CDS |
| GTCCCTAGCTGAGACTTCTG+AGG | 0.645915 | 5_4:-57836417 | None:intergenic |
| CATTGTAACCACCTCCACCA+TGG | 0.649002 | 5_4:-57836811 | None:intergenic |
| GGTGGAGGCGGTTACAACCA+CGG | 0.676037 | 5_4:+57836869 | Msa0859510:CDS |
| GGTGGAGGTGGTTACAACCA+TGG | 0.679817 | 5_4:+57836794 | Msa0859510:intron |
| GGTGGAGGCTACAATCATGG+TGG | 0.714940 | 5_4:+57836833 | Msa0859510:CDS |
| GGTTGTAACCTCCTCCACCG+TGG | 0.728454 | 5_4:-57836886 | None:intergenic |
| GGAGGTGGTTACAACCATGG+TGG | 0.740649 | 5_4:+57836797 | Msa0859510:intron |
| GGAGGCGGTTACAACCACGG+TGG | 0.797498 | 5_4:+57836872 | Msa0859510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTTTGAAGTATTGTT+TGG | - | chr5_4:57836191-57836210 | None:intergenic | 15.0% |
| !!! | ATAAATTTTGAAGTATTGTT+TGG | - | chr5_4:57836191-57836210 | None:intergenic | 15.0% |
| !!! | AATGTGTGTTGATAAAAAAA+AGG | + | chr5_4:57837064-57837083 | Msa0859510:intron | 20.0% |
| !!! | AATGTGTGTTGATAAAAAAA+AGG | + | chr5_4:57837064-57837083 | Msa0859510:intron | 20.0% |
| ! | ATATATAATTGAGGGAAGAA+GGG | - | chr5_4:57836278-57836297 | None:intergenic | 25.0% |
| ! | TATATATAATTGAGGGAAGA+AGG | - | chr5_4:57836279-57836298 | None:intergenic | 25.0% |
| ! | TGTTGTTCAAATGTGATATT+TGG | - | chr5_4:57836339-57836358 | None:intergenic | 25.0% |
| ! | ATATCACATTTGAACAACAA+TGG | + | chr5_4:57836340-57836359 | Msa0859510:exon | 25.0% |
| !! | AACAACAATGGATTCAAAAA+AGG | + | chr5_4:57836352-57836371 | Msa0859510:exon | 25.0% |
| ! | ATATATAATTGAGGGAAGAA+GGG | - | chr5_4:57836278-57836297 | None:intergenic | 25.0% |
| ! | TATATATAATTGAGGGAAGA+AGG | - | chr5_4:57836279-57836298 | None:intergenic | 25.0% |
| ! | TGTTGTTCAAATGTGATATT+TGG | - | chr5_4:57836339-57836358 | None:intergenic | 25.0% |
| ! | ATATCACATTTGAACAACAA+TGG | + | chr5_4:57836340-57836359 | Msa0859510:exon | 25.0% |
| !! | AACAACAATGGATTCAAAAA+AGG | + | chr5_4:57836352-57836371 | Msa0859510:exon | 25.0% |
| ! | CAACAAAAATGCATGGTTTT+AGG | - | chr5_4:57836134-57836153 | None:intergenic | 30.0% |
| CAATGTACAACAAAAATGCA+TGG | - | chr5_4:57836141-57836160 | None:intergenic | 30.0% | |
| CGTGCTCTATATATAATTGA+GGG | - | chr5_4:57836286-57836305 | None:intergenic | 30.0% | |
| ! | AATATATAGCTCACCCTTTT+TGG | - | chr5_4:57836465-57836484 | None:intergenic | 30.0% |
| ATCTTGCCACTATATAGTAT+AGG | + | chr5_4:57837117-57837136 | Msa0859510:CDS | 30.0% | |
| ! | CAACAAAAATGCATGGTTTT+AGG | - | chr5_4:57836134-57836153 | None:intergenic | 30.0% |
| CAATGTACAACAAAAATGCA+TGG | - | chr5_4:57836141-57836160 | None:intergenic | 30.0% | |
| CGTGCTCTATATATAATTGA+GGG | - | chr5_4:57836286-57836305 | None:intergenic | 30.0% | |
| ! | AATATATAGCTCACCCTTTT+TGG | - | chr5_4:57836465-57836484 | None:intergenic | 30.0% |
| GCGTGCTCTATATATAATTG+AGG | - | chr5_4:57836287-57836306 | None:intergenic | 35.0% | |
| TAAGAAGAACCATAGCCAAA+AGG | - | chr5_4:57836394-57836413 | None:intergenic | 35.0% | |
| GAAGTAAACGATGCCAAATA+TGG | + | chr5_4:57836617-57836636 | Msa0859510:intron | 35.0% | |
| GCGTGCTCTATATATAATTG+AGG | - | chr5_4:57836287-57836306 | None:intergenic | 35.0% | |
| TAAGAAGAACCATAGCCAAA+AGG | - | chr5_4:57836394-57836413 | None:intergenic | 35.0% | |
| GAAGTAAACGATGCCAAATA+TGG | + | chr5_4:57836617-57836636 | Msa0859510:intron | 35.0% | |
| ! | AGGACCTTTACTTGGTAGTT+GGG | - | chr5_4:57836248-57836267 | None:intergenic | 40.0% |
| ! | AAGGACCTTTACTTGGTAGT+TGG | - | chr5_4:57836249-57836268 | None:intergenic | 40.0% |
| GAGATGTAAGGACCTTTACT+TGG | - | chr5_4:57836256-57836275 | None:intergenic | 40.0% | |
| AAAAAGGCAATCCTCATGCT+AGG | + | chr5_4:57836368-57836387 | Msa0859510:CDS | 40.0% | |
| AACTACCTCTGATGCCAAAA+AGG | + | chr5_4:57836448-57836467 | Msa0859510:CDS | 40.0% | |
| ACTACCTCTGATGCCAAAAA+GGG | + | chr5_4:57836449-57836468 | Msa0859510:CDS | 40.0% | |
| GTAAACGATGCCAAATATGG+TGG | + | chr5_4:57836620-57836639 | Msa0859510:intron | 40.0% | |
| GTTGTAACCTCCACCATATT+TGG | - | chr5_4:57836633-57836652 | None:intergenic | 40.0% | |
| ! | ATTTGTTGCCATGCAAGCTA+AGG | + | chr5_4:57836964-57836983 | Msa0859510:intron | 40.0% |
| ! | AGGACCTTTACTTGGTAGTT+GGG | - | chr5_4:57836248-57836267 | None:intergenic | 40.0% |
| ! | AAGGACCTTTACTTGGTAGT+TGG | - | chr5_4:57836249-57836268 | None:intergenic | 40.0% |
| GAGATGTAAGGACCTTTACT+TGG | - | chr5_4:57836256-57836275 | None:intergenic | 40.0% | |
| AAAAAGGCAATCCTCATGCT+AGG | + | chr5_4:57836368-57836387 | Msa0859510:CDS | 40.0% | |
| AACTACCTCTGATGCCAAAA+AGG | + | chr5_4:57836448-57836467 | Msa0859510:CDS | 40.0% | |
| ACTACCTCTGATGCCAAAAA+GGG | + | chr5_4:57836449-57836468 | Msa0859510:CDS | 40.0% | |
| GTAAACGATGCCAAATATGG+TGG | + | chr5_4:57836620-57836639 | Msa0859510:intron | 40.0% | |
| GTTGTAACCTCCACCATATT+TGG | - | chr5_4:57836633-57836652 | None:intergenic | 40.0% | |
| ! | ATTTGTTGCCATGCAAGCTA+AGG | + | chr5_4:57836964-57836983 | Msa0859510:intron | 40.0% |
| ! | CCTTTACTTGGTAGTTGGGA+AGG | - | chr5_4:57836244-57836263 | None:intergenic | 45.0% |
| CCTTCCCAACTACCAAGTAA+AGG | + | chr5_4:57836241-57836260 | Msa0859510:five_prime_UTR | 45.0% | |
| ! | AATCCTCATGCTAGGCCTTT+TGG | + | chr5_4:57836376-57836395 | Msa0859510:CDS | 45.0% |
| TTTCCTCAGAAGTCTCAGCT+AGG | + | chr5_4:57836414-57836433 | Msa0859510:CDS | 45.0% | |
| TTCCTCAGAAGTCTCAGCTA+GGG | + | chr5_4:57836415-57836434 | Msa0859510:CDS | 45.0% | |
| AACGATGCCAAATATGGTGG+AGG | + | chr5_4:57836623-57836642 | Msa0859510:intron | 45.0% | |
| ! | TATGGTGGAGGTTACAACCA+CGG | + | chr5_4:57836635-57836654 | Msa0859510:intron | 45.0% |
| ! | AATGGTGGAGGTTACAACCA+CGG | + | chr5_4:57836671-57836690 | Msa0859510:intron | 45.0% |
| ! | AATGGTGGAGGCTACAATCA+TGG | + | chr5_4:57836830-57836849 | Msa0859510:CDS | 45.0% |
| !! | AGTGTTGTCCTTAGCTTGCA+TGG | - | chr5_4:57836975-57836994 | None:intergenic | 45.0% |
| ! | CCTTTACTTGGTAGTTGGGA+AGG | - | chr5_4:57836244-57836263 | None:intergenic | 45.0% |
| CCTTCCCAACTACCAAGTAA+AGG | + | chr5_4:57836241-57836260 | Msa0859510:five_prime_UTR | 45.0% | |
| ! | AATCCTCATGCTAGGCCTTT+TGG | + | chr5_4:57836376-57836395 | Msa0859510:CDS | 45.0% |
| TTTCCTCAGAAGTCTCAGCT+AGG | + | chr5_4:57836414-57836433 | Msa0859510:CDS | 45.0% | |
| TTCCTCAGAAGTCTCAGCTA+GGG | + | chr5_4:57836415-57836434 | Msa0859510:CDS | 45.0% | |
| AACGATGCCAAATATGGTGG+AGG | + | chr5_4:57836623-57836642 | Msa0859510:intron | 45.0% | |
| ! | TATGGTGGAGGTTACAACCA+CGG | + | chr5_4:57836635-57836654 | Msa0859510:intron | 45.0% |
| ! | AATGGTGGAGGTTACAACCA+CGG | + | chr5_4:57836671-57836690 | Msa0859510:intron | 45.0% |
| ! | AATGGTGGAGGCTACAATCA+TGG | + | chr5_4:57836830-57836849 | Msa0859510:CDS | 45.0% |
| !! | AGTGTTGTCCTTAGCTTGCA+TGG | - | chr5_4:57836975-57836994 | None:intergenic | 45.0% |
| GAGGGAAGAAGGGAGATGTA+AGG | - | chr5_4:57836268-57836287 | None:intergenic | 50.0% | |
| TAGCCAAAAGGCCTAGCATG+AGG | - | chr5_4:57836382-57836401 | None:intergenic | 50.0% | |
| !! | CATGCTAGGCCTTTTGGCTA+TGG | + | chr5_4:57836382-57836401 | Msa0859510:CDS | 50.0% |
| !! | CTCACCCTTTTTGGCATCAG+AGG | - | chr5_4:57836456-57836475 | None:intergenic | 50.0% |
| !! | GGTGGTGGTGGATACAACAA+TGG | + | chr5_4:57836692-57836711 | Msa0859510:intron | 50.0% |
| !! | GGTGGTGGATACAACAATGG+CGG | + | chr5_4:57836695-57836714 | Msa0859510:intron | 50.0% |
| AATGGCGGTGGATACAACCA+CGG | + | chr5_4:57836710-57836729 | Msa0859510:intron | 50.0% | |
| !! | GGTGGTGGTGGATACAACAA+TGG | + | chr5_4:57836692-57836711 | Msa0859510:intron | 50.0% |
| !! | GGTGGTGGATACAACAATGG+TGG | + | chr5_4:57836695-57836714 | Msa0859510:intron | 50.0% |
| GGTGGATACAACAATGGTGG+AGG | + | chr5_4:57836737-57836756 | Msa0859510:intron | 50.0% | |
| ! | GGATACAACAATGGTGGAGG+TGG | + | chr5_4:57836740-57836759 | Msa0859510:intron | 50.0% |
| !! | GGTGGTGGTGGATACAACAA+TGG | + | chr5_4:57836692-57836711 | Msa0859510:intron | 50.0% |
| !! | GGTGGTGGATACAACAATGG+TGG | + | chr5_4:57836695-57836714 | Msa0859510:intron | 50.0% |
| GGTGGATACAACAATGGTGG+AGG | + | chr5_4:57836737-57836756 | Msa0859510:intron | 50.0% | |
| ! | GGATACAACAATGGTGGAGG+TGG | + | chr5_4:57836740-57836759 | Msa0859510:intron | 50.0% |
| CATTGTAACCACCTCCACCA+TGG | - | chr5_4:57836814-57836833 | None:intergenic | 50.0% | |
| ! | CATGGTGGAGGTGGTTACAA+TGG | + | chr5_4:57836812-57836831 | Msa0859510:CDS | 50.0% |
| GGTTGCCAATACCATTGCCA+TGG | + | chr5_4:57836920-57836939 | Msa0859510:intron | 50.0% | |
| ACCTGCCATGGCAATGGTAT+TGG | - | chr5_4:57836928-57836947 | None:intergenic | 50.0% | |
| GAGGGAAGAAGGGAGATGTA+AGG | - | chr5_4:57836268-57836287 | None:intergenic | 50.0% | |
| TAGCCAAAAGGCCTAGCATG+AGG | - | chr5_4:57836382-57836401 | None:intergenic | 50.0% | |
| !! | CATGCTAGGCCTTTTGGCTA+TGG | + | chr5_4:57836382-57836401 | Msa0859510:CDS | 50.0% |
| !! | CTCACCCTTTTTGGCATCAG+AGG | - | chr5_4:57836456-57836475 | None:intergenic | 50.0% |
| !! | GGTGGTGGTGGATACAACAA+TGG | + | chr5_4:57836692-57836711 | Msa0859510:intron | 50.0% |
| !! | GGTGGTGGATACAACAATGG+CGG | + | chr5_4:57836695-57836714 | Msa0859510:intron | 50.0% |
| AATGGCGGTGGATACAACCA+CGG | + | chr5_4:57836710-57836729 | Msa0859510:intron | 50.0% | |
| !! | GGTGGTGGTGGATACAACAA+TGG | + | chr5_4:57836692-57836711 | Msa0859510:intron | 50.0% |
| !! | GGTGGTGGATACAACAATGG+TGG | + | chr5_4:57836695-57836714 | Msa0859510:intron | 50.0% |
| GGTGGATACAACAATGGTGG+AGG | + | chr5_4:57836737-57836756 | Msa0859510:intron | 50.0% | |
| ! | GGATACAACAATGGTGGAGG+TGG | + | chr5_4:57836740-57836759 | Msa0859510:intron | 50.0% |
| !! | GGTGGTGGTGGATACAACAA+TGG | + | chr5_4:57836692-57836711 | Msa0859510:intron | 50.0% |
| !! | GGTGGTGGATACAACAATGG+TGG | + | chr5_4:57836695-57836714 | Msa0859510:intron | 50.0% |
| GGTGGATACAACAATGGTGG+AGG | + | chr5_4:57836737-57836756 | Msa0859510:intron | 50.0% | |
| ! | GGATACAACAATGGTGGAGG+TGG | + | chr5_4:57836740-57836759 | Msa0859510:intron | 50.0% |
| CATTGTAACCACCTCCACCA+TGG | - | chr5_4:57836814-57836833 | None:intergenic | 50.0% | |
| ! | CATGGTGGAGGTGGTTACAA+TGG | + | chr5_4:57836812-57836831 | Msa0859510:CDS | 50.0% |
| GGTTGCCAATACCATTGCCA+TGG | + | chr5_4:57836920-57836939 | Msa0859510:intron | 50.0% | |
| ACCTGCCATGGCAATGGTAT+TGG | - | chr5_4:57836928-57836947 | None:intergenic | 50.0% | |
| GTCCCTAGCTGAGACTTCTG+AGG | - | chr5_4:57836420-57836439 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTTACAATGGTGG+AGG | + | chr5_4:57836659-57836678 | Msa0859510:intron | 55.0% |
| TGTTGTATCCACCACCACCG+TGG | - | chr5_4:57836691-57836710 | None:intergenic | 55.0% | |
| GGTGGATACAACAATGGCGG+TGG | + | chr5_4:57836698-57836717 | Msa0859510:intron | 55.0% | |
| TGTTGTATCCACCACCACCG+TGG | - | chr5_4:57836691-57836710 | None:intergenic | 55.0% | |
| GGTGGAGGTGGATACAACCA+CGG | + | chr5_4:57836752-57836771 | Msa0859510:intron | 55.0% | |
| TGTTGTATCCACCACCACCG+TGG | - | chr5_4:57836691-57836710 | None:intergenic | 55.0% | |
| GGTGGAGGTGGTTACAACCA+TGG | + | chr5_4:57836794-57836813 | Msa0859510:intron | 55.0% | |
| GGAGGTGGTTACAACCATGG+TGG | + | chr5_4:57836797-57836816 | Msa0859510:intron | 55.0% | |
| GGTGGTTACAACCATGGTGG+AGG | + | chr5_4:57836800-57836819 | Msa0859510:intron | 55.0% | |
| ! | GGTTACAACCATGGTGGAGG+TGG | + | chr5_4:57836803-57836822 | Msa0859510:CDS | 55.0% |
| GGTGGAGGTGGTTACAATGG+TGG | + | chr5_4:57836815-57836834 | Msa0859510:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+AGG | + | chr5_4:57836818-57836837 | Msa0859510:CDS | 55.0% | |
| GGTGGAGGCTACAATCATGG+TGG | + | chr5_4:57836833-57836852 | Msa0859510:CDS | 55.0% | |
| GGAGGCTACAATCATGGTGG+AGG | + | chr5_4:57836836-57836855 | Msa0859510:CDS | 55.0% | |
| ! | GGCTACAATCATGGTGGAGG+CGG | + | chr5_4:57836839-57836858 | Msa0859510:CDS | 55.0% |
| ! | CATGGTGGAGGCGGTTACAA+CGG | + | chr5_4:57836848-57836867 | Msa0859510:CDS | 55.0% |
| GGTGGAGGAGGTTACAACCA+CGG | + | chr5_4:57836890-57836909 | Msa0859510:intron | 55.0% | |
| GCCAATACCATTGCCATGGC+AGG | + | chr5_4:57836924-57836943 | Msa0859510:intron | 55.0% | |
| GTCCCTAGCTGAGACTTCTG+AGG | - | chr5_4:57836420-57836439 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTTACAATGGTGG+AGG | + | chr5_4:57836659-57836678 | Msa0859510:intron | 55.0% |
| TGTTGTATCCACCACCACCG+TGG | - | chr5_4:57836691-57836710 | None:intergenic | 55.0% | |
| GGTGGATACAACAATGGCGG+TGG | + | chr5_4:57836698-57836717 | Msa0859510:intron | 55.0% | |
| TGTTGTATCCACCACCACCG+TGG | - | chr5_4:57836691-57836710 | None:intergenic | 55.0% | |
| GGTGGAGGTGGATACAACCA+CGG | + | chr5_4:57836752-57836771 | Msa0859510:intron | 55.0% | |
| TGTTGTATCCACCACCACCG+TGG | - | chr5_4:57836691-57836710 | None:intergenic | 55.0% | |
| GGTGGAGGTGGTTACAACCA+TGG | + | chr5_4:57836794-57836813 | Msa0859510:intron | 55.0% | |
| GGAGGTGGTTACAACCATGG+TGG | + | chr5_4:57836797-57836816 | Msa0859510:intron | 55.0% | |
| GGTGGTTACAACCATGGTGG+AGG | + | chr5_4:57836800-57836819 | Msa0859510:intron | 55.0% | |
| ! | GGTTACAACCATGGTGGAGG+TGG | + | chr5_4:57836803-57836822 | Msa0859510:CDS | 55.0% |
| GGTGGAGGTGGTTACAATGG+TGG | + | chr5_4:57836815-57836834 | Msa0859510:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+AGG | + | chr5_4:57836818-57836837 | Msa0859510:CDS | 55.0% | |
| GGTGGAGGCTACAATCATGG+TGG | + | chr5_4:57836833-57836852 | Msa0859510:CDS | 55.0% | |
| GGAGGCTACAATCATGGTGG+AGG | + | chr5_4:57836836-57836855 | Msa0859510:CDS | 55.0% | |
| ! | GGCTACAATCATGGTGGAGG+CGG | + | chr5_4:57836839-57836858 | Msa0859510:CDS | 55.0% |
| ! | CATGGTGGAGGCGGTTACAA+CGG | + | chr5_4:57836848-57836867 | Msa0859510:CDS | 55.0% |
| GGTGGAGGAGGTTACAACCA+CGG | + | chr5_4:57836890-57836909 | Msa0859510:intron | 55.0% | |
| GCCAATACCATTGCCATGGC+AGG | + | chr5_4:57836924-57836943 | Msa0859510:intron | 55.0% | |
| GGTGGAGGTTACAACCACGG+CGG | + | chr5_4:57836638-57836657 | Msa0859510:intron | 60.0% | |
| CATTGTAACCACCACCGCCG+TGG | - | chr5_4:57836655-57836674 | None:intergenic | 60.0% | |
| ! | CACGGCGGTGGTGGTTACAA+TGG | + | chr5_4:57836653-57836672 | Msa0859510:intron | 60.0% |
| ! | GGCGGTGGTGGTTACAATGG+TGG | + | chr5_4:57836656-57836675 | Msa0859510:intron | 60.0% |
| GGTGGAGGTTACAACCACGG+TGG | + | chr5_4:57836638-57836657 | Msa0859510:intron | 60.0% | |
| GGAGGTTACAACCACGGTGG+TGG | + | chr5_4:57836677-57836696 | Msa0859510:intron | 60.0% | |
| ! | GGTTACAACCACGGTGGTGG+TGG | + | chr5_4:57836680-57836699 | Msa0859510:intron | 60.0% |
| GGTGGATACAACCACGGTGG+TGG | + | chr5_4:57836716-57836735 | Msa0859510:intron | 60.0% | |
| ! | GGATACAACCACGGTGGTGG+TGG | + | chr5_4:57836719-57836738 | Msa0859510:intron | 60.0% |
| GGAGGTGGATACAACCACGG+TGG | + | chr5_4:57836755-57836774 | Msa0859510:intron | 60.0% | |
| GGTGGATACAACCACGGTGG+TGG | + | chr5_4:57836716-57836735 | Msa0859510:intron | 60.0% | |
| ! | GGATACAACCACGGTGGTGG+TGG | + | chr5_4:57836719-57836738 | Msa0859510:intron | 60.0% |
| GGTGGAGGCGGTTACAACCA+CGG | + | chr5_4:57836869-57836888 | Msa0859510:CDS | 60.0% | |
| GGTTACAACCACGGTGGAGG+AGG | + | chr5_4:57836878-57836897 | Msa0859510:CDS | 60.0% | |
| GGTTGTAACCTCCTCCACCG+TGG | - | chr5_4:57836889-57836908 | None:intergenic | 60.0% | |
| GGAGGAGGTTACAACCACGG+TGG | + | chr5_4:57836893-57836912 | Msa0859510:intron | 60.0% | |
| GGAGGTTACAACCACGGTGG+AGG | + | chr5_4:57836677-57836696 | Msa0859510:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+CGG | + | chr5_4:57836878-57836897 | Msa0859510:CDS | 60.0% | |
| AGCAGCACCTGCCATGGCAA+TGG | - | chr5_4:57836934-57836953 | None:intergenic | 60.0% | |
| CATGTGAGCAGCACCTGCCA+TGG | - | chr5_4:57836940-57836959 | None:intergenic | 60.0% | |
| GGTGGAGGTTACAACCACGG+CGG | + | chr5_4:57836638-57836657 | Msa0859510:intron | 60.0% | |
| CATTGTAACCACCACCGCCG+TGG | - | chr5_4:57836655-57836674 | None:intergenic | 60.0% | |
| ! | CACGGCGGTGGTGGTTACAA+TGG | + | chr5_4:57836653-57836672 | Msa0859510:intron | 60.0% |
| ! | GGCGGTGGTGGTTACAATGG+TGG | + | chr5_4:57836656-57836675 | Msa0859510:intron | 60.0% |
| GGTGGAGGTTACAACCACGG+TGG | + | chr5_4:57836638-57836657 | Msa0859510:intron | 60.0% | |
| GGAGGTTACAACCACGGTGG+TGG | + | chr5_4:57836677-57836696 | Msa0859510:intron | 60.0% | |
| ! | GGTTACAACCACGGTGGTGG+TGG | + | chr5_4:57836680-57836699 | Msa0859510:intron | 60.0% |
| GGTGGATACAACCACGGTGG+TGG | + | chr5_4:57836716-57836735 | Msa0859510:intron | 60.0% | |
| ! | GGATACAACCACGGTGGTGG+TGG | + | chr5_4:57836719-57836738 | Msa0859510:intron | 60.0% |
| GGAGGTGGATACAACCACGG+TGG | + | chr5_4:57836755-57836774 | Msa0859510:intron | 60.0% | |
| GGTGGATACAACCACGGTGG+TGG | + | chr5_4:57836716-57836735 | Msa0859510:intron | 60.0% | |
| ! | GGATACAACCACGGTGGTGG+TGG | + | chr5_4:57836719-57836738 | Msa0859510:intron | 60.0% |
| GGTGGAGGCGGTTACAACCA+CGG | + | chr5_4:57836869-57836888 | Msa0859510:CDS | 60.0% | |
| GGTTACAACCACGGTGGAGG+AGG | + | chr5_4:57836878-57836897 | Msa0859510:CDS | 60.0% | |
| GGTTGTAACCTCCTCCACCG+TGG | - | chr5_4:57836889-57836908 | None:intergenic | 60.0% | |
| GGAGGAGGTTACAACCACGG+TGG | + | chr5_4:57836893-57836912 | Msa0859510:intron | 60.0% | |
| GGAGGTTACAACCACGGTGG+AGG | + | chr5_4:57836677-57836696 | Msa0859510:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+CGG | + | chr5_4:57836878-57836897 | Msa0859510:CDS | 60.0% | |
| AGCAGCACCTGCCATGGCAA+TGG | - | chr5_4:57836934-57836953 | None:intergenic | 60.0% | |
| CATGTGAGCAGCACCTGCCA+TGG | - | chr5_4:57836940-57836959 | None:intergenic | 60.0% | |
| GGAGGTTACAACCACGGCGG+TGG | + | chr5_4:57836641-57836660 | Msa0859510:intron | 65.0% | |
| GGTTACAACCACGGCGGTGG+TGG | + | chr5_4:57836644-57836663 | Msa0859510:intron | 65.0% | |
| GGCGGTGGATACAACCACGG+TGG | + | chr5_4:57836713-57836732 | Msa0859510:intron | 65.0% | |
| GGTGGAGGCGGTTACAACGG+TGG | + | chr5_4:57836851-57836870 | Msa0859510:CDS | 65.0% | |
| GGAGGCGGTTACAACGGTGG+AGG | + | chr5_4:57836854-57836873 | Msa0859510:CDS | 65.0% | |
| GGCGGTTACAACGGTGGAGG+CGG | + | chr5_4:57836857-57836876 | Msa0859510:CDS | 65.0% | |
| GGAGGCGGTTACAACCACGG+TGG | + | chr5_4:57836872-57836891 | Msa0859510:CDS | 65.0% | |
| GGCGGTTACAACCACGGTGG+AGG | + | chr5_4:57836875-57836894 | Msa0859510:CDS | 65.0% | |
| ATTGGCAACCGCCTCCACCG+TGG | - | chr5_4:57836910-57836929 | None:intergenic | 65.0% | |
| GGAGGTTACAACCACGGCGG+TGG | + | chr5_4:57836641-57836660 | Msa0859510:intron | 65.0% | |
| GGTTACAACCACGGCGGTGG+TGG | + | chr5_4:57836644-57836663 | Msa0859510:intron | 65.0% | |
| GGCGGTGGATACAACCACGG+TGG | + | chr5_4:57836713-57836732 | Msa0859510:intron | 65.0% | |
| GGTGGAGGCGGTTACAACGG+TGG | + | chr5_4:57836851-57836870 | Msa0859510:CDS | 65.0% | |
| GGAGGCGGTTACAACGGTGG+AGG | + | chr5_4:57836854-57836873 | Msa0859510:CDS | 65.0% | |
| GGCGGTTACAACGGTGGAGG+CGG | + | chr5_4:57836857-57836876 | Msa0859510:CDS | 65.0% | |
| GGAGGCGGTTACAACCACGG+TGG | + | chr5_4:57836872-57836891 | Msa0859510:CDS | 65.0% | |
| GGCGGTTACAACCACGGTGG+AGG | + | chr5_4:57836875-57836894 | Msa0859510:CDS | 65.0% | |
| ATTGGCAACCGCCTCCACCG+TGG | - | chr5_4:57836910-57836929 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57836067 | 57837138 | 57836067 | ID=Msa0859510;Name=Msa0859510 |
| chr5_4 | mRNA | 57836067 | 57837138 | 57836067 | ID=Msa0859510-mRNA-1;Parent=Msa0859510;Name=Msa0859510-mRNA-1;_AED=0.25;_eAED=0.25;_QI=292|0|0.33|0.66|0|0.33|3|0|82 |
| chr5_4 | exon | 57836067 | 57836470 | 57836067 | ID=Msa0859510-mRNA-1:exon:17638;Parent=Msa0859510-mRNA-1 |
| chr5_4 | exon | 57836801 | 57836899 | 57836801 | ID=Msa0859510-mRNA-1:exon:17639;Parent=Msa0859510-mRNA-1 |
| chr5_4 | exon | 57837101 | 57837138 | 57837101 | ID=Msa0859510-mRNA-1:exon:17640;Parent=Msa0859510-mRNA-1 |
| chr5_4 | five_prime_UTR | 57836067 | 57836358 | 57836067 | ID=Msa0859510-mRNA-1:five_prime_utr;Parent=Msa0859510-mRNA-1 |
| chr5_4 | CDS | 57836359 | 57836470 | 57836359 | ID=Msa0859510-mRNA-1:cds;Parent=Msa0859510-mRNA-1 |
| chr5_4 | CDS | 57836801 | 57836899 | 57836801 | ID=Msa0859510-mRNA-1:cds;Parent=Msa0859510-mRNA-1 |
| chr5_4 | CDS | 57837101 | 57837138 | 57837101 | ID=Msa0859510-mRNA-1:cds;Parent=Msa0859510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
