Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128810 | XP_003626337.1 | 94.040 | 151 | 5 | 1 | 1 | 151 | 1 | 147 | 5.87e-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128810 | sp|Q8L9T7|AHP5_ARATH | 55.405 | 148 | 66 | 0 | 4 | 151 | 6 | 153 | 9.31e-57 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128810 | A2Q3H8 | 94.040 | 151 | 5 | 1 | 1 | 151 | 1 | 147 | 2.80e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092350 | Msa1128810 | 0.801615 | 8.284186e-49 | -8.615850e-47 |
| Msa0101530 | Msa1128810 | 0.814075 | 1.853043e-51 | -8.615850e-47 |
| Msa0982730 | Msa1128810 | 0.800362 | 1.493639e-48 | -8.615850e-47 |
| Msa1038860 | Msa1128810 | 0.843766 | 1.144905e-58 | -8.615850e-47 |
| Msa0240590 | Msa1128810 | -0.818735 | 1.678207e-52 | -8.615850e-47 |
| Msa0279090 | Msa1128810 | -0.809114 | 2.220843e-50 | -8.615850e-47 |
| Msa1107330 | Msa1128810 | 0.802183 | 6.332468e-49 | -8.615850e-47 |
| Msa1128810 | Msa1197720 | 0.820290 | 7.418235e-53 | -8.615850e-47 |
| Msa1128810 | Msa1205270 | -0.807999 | 3.841054e-50 | -8.615850e-47 |
| Msa1128810 | Msa1251410 | 0.812250 | 4.659593e-51 | -8.615850e-47 |
| Msa1128810 | Msa1322980 | 0.800407 | 1.461986e-48 | -8.615850e-47 |
| Msa1128810 | Msa1352580 | 0.867107 | 1.746385e-65 | -8.615850e-47 |
| Msa1128810 | Msa1379940 | 0.820722 | 5.903078e-53 | -8.615850e-47 |
| Msa0495620 | Msa1128810 | 0.800710 | 1.268571e-48 | -8.615850e-47 |
| Msa0526500 | Msa1128810 | -0.804084 | 2.560129e-49 | -8.615850e-47 |
| Msa0540670 | Msa1128810 | 0.811772 | 5.923797e-51 | -8.615850e-47 |
| Msa0579080 | Msa1128810 | 0.818879 | 1.556834e-52 | -8.615850e-47 |
| Msa0965800 | Msa1128810 | 0.807736 | 4.369434e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128810 | MtrunA17_Chr7g0273321 | 94.040 | 151 | 5 | 1 | 1 | 151 | 1 | 147 | 5.39e-101 | 286 |
| Msa1128810 | MtrunA17_Chr1g0191351 | 64.828 | 145 | 50 | 1 | 1 | 145 | 1 | 144 | 6.68e-67 | 200 |
| Msa1128810 | MtrunA17_Chr2g0286781 | 60.544 | 147 | 57 | 1 | 4 | 150 | 3 | 148 | 6.07e-57 | 174 |
| Msa1128810 | MtrunA17_Chr1g0196361 | 50.350 | 143 | 70 | 1 | 6 | 148 | 3 | 144 | 2.06e-51 | 160 |
| Msa1128810 | MtrunA17_Chr2g0331021 | 43.284 | 134 | 75 | 1 | 8 | 141 | 7 | 139 | 7.62e-38 | 126 |
| Msa1128810 | MtrunA17_Chr2g0331011 | 43.284 | 134 | 75 | 1 | 8 | 141 | 7 | 139 | 9.27e-38 | 126 |
| Msa1128810 | MtrunA17_Chr2g0333131 | 44.776 | 134 | 73 | 1 | 18 | 150 | 20 | 153 | 3.96e-30 | 107 |
| Msa1128810 | MtrunA17_Chr4g0003251 | 46.324 | 136 | 72 | 1 | 16 | 150 | 6 | 141 | 2.73e-27 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1128810 | AT1G03430.1 | 55.405 | 148 | 66 | 0 | 4 | 151 | 6 | 153 | 9.47e-58 | 177 |
| Msa1128810 | AT5G39340.1 | 52.703 | 148 | 70 | 0 | 4 | 151 | 5 | 152 | 5.46e-55 | 170 |
| Msa1128810 | AT3G29350.1 | 52.703 | 148 | 70 | 0 | 4 | 151 | 5 | 152 | 7.40e-55 | 170 |
| Msa1128810 | AT5G39340.4 | 52.703 | 148 | 70 | 0 | 4 | 151 | 38 | 185 | 2.10e-54 | 170 |
| Msa1128810 | AT5G39340.2 | 52.703 | 148 | 70 | 0 | 4 | 151 | 54 | 201 | 4.60e-54 | 169 |
| Msa1128810 | AT5G39340.3 | 52.703 | 148 | 70 | 0 | 4 | 151 | 54 | 201 | 4.60e-54 | 169 |
| Msa1128810 | AT3G21510.1 | 59.184 | 147 | 59 | 1 | 4 | 150 | 3 | 148 | 1.30e-53 | 166 |
| Msa1128810 | AT1G03430.2 | 55.396 | 139 | 62 | 0 | 4 | 142 | 6 | 144 | 1.79e-51 | 161 |
| Msa1128810 | AT3G29350.2 | 57.273 | 110 | 47 | 0 | 4 | 113 | 5 | 114 | 1.63e-42 | 137 |
| Msa1128810 | AT3G16360.2 | 42.222 | 135 | 77 | 1 | 7 | 141 | 1 | 134 | 3.31e-39 | 130 |
| Msa1128810 | AT3G16360.1 | 42.500 | 120 | 68 | 1 | 21 | 140 | 9 | 127 | 4.12e-35 | 119 |
| Msa1128810 | AT1G80100.1 | 42.282 | 149 | 85 | 1 | 3 | 150 | 5 | 153 | 2.34e-24 | 92.4 |
| Msa1128810 | AT1G80100.3 | 41.176 | 136 | 80 | 0 | 3 | 138 | 5 | 140 | 2.73e-20 | 82.0 |
| Msa1128810 | AT4G04402.1 | 32.624 | 141 | 81 | 4 | 22 | 150 | 24 | 162 | 1.40e-18 | 77.8 |
| Msa1128810 | AT1G80100.2 | 38.255 | 149 | 69 | 3 | 3 | 150 | 5 | 131 | 5.31e-18 | 75.5 |
Find 47 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGCTCCTTTGGTTAAAA+TGG | 0.101397 | 7_3:+80700770 | Msa1128810:three_prime_UTR |
| TTCAAACCAATTGAGAATTT+AGG | 0.240785 | 7_3:-80700674 | None:intergenic |
| CTGAATAACCTCTGCTCCTT+TGG | 0.277825 | 7_3:+80700761 | Msa1128810:three_prime_UTR |
| ACTATGCTTGGATAGAGATT+TGG | 0.335146 | 7_3:-80699361 | None:intergenic |
| CTTAGGAGGTACTATTCATT+TGG | 0.343959 | 7_3:-80699435 | None:intergenic |
| TGGCTGCTTTGTATGCAAAT+TGG | 0.347766 | 7_3:-80700611 | None:intergenic |
| CAATTTGCAATTACTATGCT+TGG | 0.356276 | 7_3:-80699373 | None:intergenic |
| TTATCTTATTATAGATCATC+AGG | 0.357517 | 7_3:+80700909 | Msa1128810:three_prime_UTR |
| ACTTGTAGTGCCATCTTCAT+TGG | 0.367493 | 7_3:-80700878 | None:intergenic |
| TCAGTGCTACTCAATATCTT+AGG | 0.393453 | 7_3:-80699452 | None:intergenic |
| AGAGAAGCTTCTTAATCAAT+TGG | 0.405079 | 7_3:+80699735 | Msa1128810:CDS |
| TCCAGTCCTAAATTCTCAAT+TGG | 0.416974 | 7_3:+80700668 | Msa1128810:three_prime_UTR |
| CTTGAAGAGTGTCTCAAACT+TGG | 0.419955 | 7_3:-80700408 | None:intergenic |
| TTTATCTTTGCCAATGAAGA+TGG | 0.421249 | 7_3:+80700868 | Msa1128810:three_prime_UTR |
| ACCACTTCAACAACAAAGTC+AGG | 0.424359 | 7_3:-80699691 | None:intergenic |
| TTGAATAGTAAAATGGAAGT+TGG | 0.424879 | 7_3:+80700805 | Msa1128810:intron |
| CAAGTTTGAGACACTCTTCA+AGG | 0.437960 | 7_3:+80700409 | Msa1128810:CDS |
| GCTGGTTAAATTGATCATCT+AGG | 0.442108 | 7_3:-80699642 | None:intergenic |
| TCCCTTATCATTCACTATCT+AGG | 0.448382 | 7_3:-80700568 | None:intergenic |
| GATTAGTATTCTTGAACAAC+CGG | 0.448984 | 7_3:-80700843 | None:intergenic |
| AGTGGTCGCTCTCTTCTTTG+AGG | 0.457540 | 7_3:+80699708 | Msa1128810:CDS |
| TTGGAATGTTTGATCTCTAC+CGG | 0.464830 | 7_3:+80700824 | Msa1128810:three_prime_UTR |
| CTCCTAGATAGTGAATGATA+AGG | 0.467785 | 7_3:+80700566 | Msa1128810:exon |
| CATCTTGAAGTAGTTGAAGC+TGG | 0.469279 | 7_3:-80699660 | None:intergenic |
| TGGAGCTGCTGCCTTTCAGC+TGG | 0.470844 | 7_3:-80699924 | None:intergenic |
| AGCTGAAAGGCAGCAGCTCC+AGG | 0.471527 | 7_3:+80699926 | Msa1128810:CDS |
| CCCTGACTTTGTTGTTGAAG+TGG | 0.473841 | 7_3:+80699690 | Msa1128810:CDS |
| AGGAGGTACTATTCATTTGG+TGG | 0.484851 | 7_3:-80699432 | None:intergenic |
| GATATGGATGGATCACTGTC+TGG | 0.490786 | 7_3:-80700717 | None:intergenic |
| TAAATGTTACCTCTTGAAAG+AGG | 0.497593 | 7_3:-80699540 | None:intergenic |
| TCCTAGATAGTGAATGATAA+GGG | 0.511302 | 7_3:+80700567 | Msa1128810:exon |
| ATTAATCCCAAGCAGAGGCC+AGG | 0.527313 | 7_3:+80699861 | Msa1128810:intron |
| AAATCAAAACATGAGAAAAG+TGG | 0.529090 | 7_3:-80700631 | None:intergenic |
| CACTTCTTCCCTCTTTCAAG+AGG | 0.532768 | 7_3:+80699531 | Msa1128810:CDS |
| GTACAATATATGGATATGGA+TGG | 0.539041 | 7_3:-80700729 | None:intergenic |
| TTAAAAGTTATCCACACAAG+AGG | 0.542011 | 7_3:+80699337 | None:intergenic |
| ACCAATTGAGAATTTAGGAC+TGG | 0.547961 | 7_3:-80700669 | None:intergenic |
| AGAGATTTGGCCCTCTTGTG+TGG | 0.561039 | 7_3:-80699348 | None:intergenic |
| GGCTCAGTTGCAAAGACAGT+TGG | 0.573415 | 7_3:+80699501 | Msa1128810:CDS |
| TATCTTATTATAGATCATCA+GGG | 0.580540 | 7_3:+80700910 | Msa1128810:three_prime_UTR |
| GCTCTTGTTCACCAGCTGAA+AGG | 0.590228 | 7_3:+80699913 | Msa1128810:CDS |
| AAATGTTACCTCTTGAAAGA+GGG | 0.594954 | 7_3:-80699539 | None:intergenic |
| AAGCTTGCAAGACATAAAGC+AGG | 0.597078 | 7_3:+80700367 | Msa1128810:CDS |
| GTGCTACTCAATATCTTAGG+AGG | 0.605666 | 7_3:-80699449 | None:intergenic |
| GAGAACAACAATGTATAGTG+TGG | 0.639598 | 7_3:+80699480 | Msa1128810:exon |
| TAAAAGTTATCCACACAAGA+GGG | 0.650001 | 7_3:+80699338 | None:intergenic |
| CCACTTCAACAACAAAGTCA+GGG | 0.672473 | 7_3:-80699690 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTAATACATATATGAA+GGG | - | chr7_3:80700450-80700469 | None:intergenic | 10.0% |
| !! | TTAATTTAATACATATATGA+AGG | - | chr7_3:80700451-80700470 | None:intergenic | 10.0% |
| !! | TAATTTAATACATATATGAA+GGG | - | chr7_3:80700450-80700469 | None:intergenic | 10.0% |
| !! | TTAATTTAATACATATATGA+AGG | - | chr7_3:80700451-80700470 | None:intergenic | 10.0% |
| !!! | TTTCCTTTATTTTATGTATA+GGG | + | chr7_3:80699796-80699815 | Msa1128810:intron | 15.0% |
| !! | TATAGAATTATACATTACTT+TGG | - | chr7_3:80699823-80699842 | None:intergenic | 15.0% |
| !!! | AAAATAACGTTGATTTTAAA+AGG | + | chr7_3:80699884-80699903 | Msa1128810:CDS | 15.0% |
| !!! | AAATAACGTTGATTTTAAAA+GGG | + | chr7_3:80699885-80699904 | Msa1128810:CDS | 15.0% |
| !!! | AGAAAAAATATACATGTTTT+TGG | + | chr7_3:80700328-80700347 | Msa1128810:intron | 15.0% |
| !!! | AATTAATCTTATCATTTTGA+GGG | + | chr7_3:80700964-80700983 | Msa1128810:three_prime_UTR | 15.0% |
| !!! | TTTCCTTTATTTTATGTATA+GGG | + | chr7_3:80699796-80699815 | Msa1128810:intron | 15.0% |
| !! | TATAGAATTATACATTACTT+TGG | - | chr7_3:80699823-80699842 | None:intergenic | 15.0% |
| !!! | AAAATAACGTTGATTTTAAA+AGG | + | chr7_3:80699884-80699903 | Msa1128810:CDS | 15.0% |
| !!! | AAATAACGTTGATTTTAAAA+GGG | + | chr7_3:80699885-80699904 | Msa1128810:CDS | 15.0% |
| !!! | AGAAAAAATATACATGTTTT+TGG | + | chr7_3:80700328-80700347 | Msa1128810:intron | 15.0% |
| !!! | AATTAATCTTATCATTTTGA+GGG | + | chr7_3:80700964-80700983 | Msa1128810:three_prime_UTR | 15.0% |
| !! | AAGAAAAGATAGAAAGAAAA+TGG | - | chr7_3:80699591-80699610 | None:intergenic | 20.0% |
| !!! | CTTTCCTTTATTTTATGTAT+AGG | + | chr7_3:80699795-80699814 | Msa1128810:intron | 20.0% |
| !!! | TTCCTTTATTTTATGTATAG+GGG | + | chr7_3:80699797-80699816 | Msa1128810:intron | 20.0% |
| !!! | TACTTTCTTATCTTGTTTTA+AGG | - | chr7_3:80700107-80700126 | None:intergenic | 20.0% |
| !!! | CAACTTGTATAATTTTGATA+AGG | + | chr7_3:80700145-80700164 | Msa1128810:intron | 20.0% |
| !!! | TTTTGTACAATATATGGATA+TGG | - | chr7_3:80700736-80700755 | None:intergenic | 20.0% |
| !!! | GTTTTCTTTTGTACAATATA+TGG | - | chr7_3:80700742-80700761 | None:intergenic | 20.0% |
| !! | TTATCTTATTATAGATCATC+AGG | + | chr7_3:80700909-80700928 | Msa1128810:three_prime_UTR | 20.0% |
| !! | TATCTTATTATAGATCATCA+GGG | + | chr7_3:80700910-80700929 | Msa1128810:three_prime_UTR | 20.0% |
| !!! | GAATTAATCTTATCATTTTG+AGG | + | chr7_3:80700963-80700982 | Msa1128810:three_prime_UTR | 20.0% |
| !!! | ATTAATCTTATCATTTTGAG+GGG | + | chr7_3:80700965-80700984 | Msa1128810:three_prime_UTR | 20.0% |
| !! | AAGAAAAGATAGAAAGAAAA+TGG | - | chr7_3:80699591-80699610 | None:intergenic | 20.0% |
| !!! | CTTTCCTTTATTTTATGTAT+AGG | + | chr7_3:80699795-80699814 | Msa1128810:intron | 20.0% |
| !!! | TTCCTTTATTTTATGTATAG+GGG | + | chr7_3:80699797-80699816 | Msa1128810:intron | 20.0% |
| !!! | TACTTTCTTATCTTGTTTTA+AGG | - | chr7_3:80700107-80700126 | None:intergenic | 20.0% |
| !!! | CAACTTGTATAATTTTGATA+AGG | + | chr7_3:80700145-80700164 | Msa1128810:intron | 20.0% |
| !!! | TTTTGTACAATATATGGATA+TGG | - | chr7_3:80700736-80700755 | None:intergenic | 20.0% |
| !!! | GTTTTCTTTTGTACAATATA+TGG | - | chr7_3:80700742-80700761 | None:intergenic | 20.0% |
| !! | TTATCTTATTATAGATCATC+AGG | + | chr7_3:80700909-80700928 | Msa1128810:three_prime_UTR | 20.0% |
| !! | TATCTTATTATAGATCATCA+GGG | + | chr7_3:80700910-80700929 | Msa1128810:three_prime_UTR | 20.0% |
| !!! | GAATTAATCTTATCATTTTG+AGG | + | chr7_3:80700963-80700982 | Msa1128810:three_prime_UTR | 20.0% |
| !!! | ATTAATCTTATCATTTTGAG+GGG | + | chr7_3:80700965-80700984 | Msa1128810:three_prime_UTR | 20.0% |
| !! | TCTATCTTTTCTTTCATTTG+TGG | + | chr7_3:80699598-80699617 | Msa1128810:intron | 25.0% |
| ! | CAATTGGAAAAAGAAATGTA+AGG | + | chr7_3:80699751-80699770 | Msa1128810:intron | 25.0% |
| !!! | TAAAATCAACGTTATTTTCC+TGG | - | chr7_3:80699882-80699901 | None:intergenic | 25.0% |
| ! | CAAAAGTTCAATATATTACC+TGG | - | chr7_3:80699947-80699966 | None:intergenic | 25.0% |
| !! | CTTATCTTATTTCAAGAACA+AGG | - | chr7_3:80700049-80700068 | None:intergenic | 25.0% |
| ! | AAATCAAAACATGAGAAAAG+TGG | - | chr7_3:80700634-80700653 | None:intergenic | 25.0% |
| ! | TTCAAACCAATTGAGAATTT+AGG | - | chr7_3:80700677-80700696 | None:intergenic | 25.0% |
| ! | GGAATGTTTGAATAGTAAAA+TGG | + | chr7_3:80700798-80700817 | Msa1128810:intron | 25.0% |
| ! | TTGAATAGTAAAATGGAAGT+TGG | + | chr7_3:80700805-80700824 | Msa1128810:intron | 25.0% |
| !! | TCTATCTTTTCTTTCATTTG+TGG | + | chr7_3:80699598-80699617 | Msa1128810:intron | 25.0% |
| ! | CAATTGGAAAAAGAAATGTA+AGG | + | chr7_3:80699751-80699770 | Msa1128810:intron | 25.0% |
| !!! | TAAAATCAACGTTATTTTCC+TGG | - | chr7_3:80699882-80699901 | None:intergenic | 25.0% |
| ! | CAAAAGTTCAATATATTACC+TGG | - | chr7_3:80699947-80699966 | None:intergenic | 25.0% |
| !! | CTTATCTTATTTCAAGAACA+AGG | - | chr7_3:80700049-80700068 | None:intergenic | 25.0% |
| ! | AAATCAAAACATGAGAAAAG+TGG | - | chr7_3:80700634-80700653 | None:intergenic | 25.0% |
| ! | TTCAAACCAATTGAGAATTT+AGG | - | chr7_3:80700677-80700696 | None:intergenic | 25.0% |
| ! | GGAATGTTTGAATAGTAAAA+TGG | + | chr7_3:80700798-80700817 | Msa1128810:intron | 25.0% |
| ! | TTGAATAGTAAAATGGAAGT+TGG | + | chr7_3:80700805-80700824 | Msa1128810:intron | 25.0% |
| CAATTTGCAATTACTATGCT+TGG | - | chr7_3:80699376-80699395 | None:intergenic | 30.0% | |
| AAATGTTACCTCTTGAAAGA+GGG | - | chr7_3:80699542-80699561 | None:intergenic | 30.0% | |
| TAAATGTTACCTCTTGAAAG+AGG | - | chr7_3:80699543-80699562 | None:intergenic | 30.0% | |
| ! | TTGTGGTGATATCTTTGAAA+AGG | + | chr7_3:80699615-80699634 | Msa1128810:intron | 30.0% |
| ! | TGTGGTGATATCTTTGAAAA+GGG | + | chr7_3:80699616-80699635 | Msa1128810:intron | 30.0% |
| AGAGAAGCTTCTTAATCAAT+TGG | + | chr7_3:80699735-80699754 | Msa1128810:CDS | 30.0% | |
| !!! | TAACGTTGATTTTAAAAGGG+TGG | + | chr7_3:80699888-80699907 | Msa1128810:CDS | 30.0% |
| CTTATTTCAAGAACAAGGAA+AGG | - | chr7_3:80700044-80700063 | None:intergenic | 30.0% | |
| GTTATTGGAAAATACAGCAT+TGG | + | chr7_3:80700175-80700194 | Msa1128810:intron | 30.0% | |
| !!! | TATACATGTTTTTGGCATTC+AGG | + | chr7_3:80700336-80700355 | Msa1128810:intron | 30.0% |
| TCCTAGATAGTGAATGATAA+GGG | + | chr7_3:80700567-80700586 | Msa1128810:exon | 30.0% | |
| GTACAATATATGGATATGGA+TGG | - | chr7_3:80700732-80700751 | None:intergenic | 30.0% | |
| GATTAGTATTCTTGAACAAC+CGG | - | chr7_3:80700846-80700865 | None:intergenic | 30.0% | |
| TTTATCTTTGCCAATGAAGA+TGG | + | chr7_3:80700868-80700887 | Msa1128810:three_prime_UTR | 30.0% | |
| CAATTTGCAATTACTATGCT+TGG | - | chr7_3:80699376-80699395 | None:intergenic | 30.0% | |
| AAATGTTACCTCTTGAAAGA+GGG | - | chr7_3:80699542-80699561 | None:intergenic | 30.0% | |
| TAAATGTTACCTCTTGAAAG+AGG | - | chr7_3:80699543-80699562 | None:intergenic | 30.0% | |
| ! | TTGTGGTGATATCTTTGAAA+AGG | + | chr7_3:80699615-80699634 | Msa1128810:intron | 30.0% |
| ! | TGTGGTGATATCTTTGAAAA+GGG | + | chr7_3:80699616-80699635 | Msa1128810:intron | 30.0% |
| AGAGAAGCTTCTTAATCAAT+TGG | + | chr7_3:80699735-80699754 | Msa1128810:CDS | 30.0% | |
| !!! | TAACGTTGATTTTAAAAGGG+TGG | + | chr7_3:80699888-80699907 | Msa1128810:CDS | 30.0% |
| CTTATTTCAAGAACAAGGAA+AGG | - | chr7_3:80700044-80700063 | None:intergenic | 30.0% | |
| GTTATTGGAAAATACAGCAT+TGG | + | chr7_3:80700175-80700194 | Msa1128810:intron | 30.0% | |
| !!! | TATACATGTTTTTGGCATTC+AGG | + | chr7_3:80700336-80700355 | Msa1128810:intron | 30.0% |
| TCCTAGATAGTGAATGATAA+GGG | + | chr7_3:80700567-80700586 | Msa1128810:exon | 30.0% | |
| GTACAATATATGGATATGGA+TGG | - | chr7_3:80700732-80700751 | None:intergenic | 30.0% | |
| GATTAGTATTCTTGAACAAC+CGG | - | chr7_3:80700846-80700865 | None:intergenic | 30.0% | |
| TTTATCTTTGCCAATGAAGA+TGG | + | chr7_3:80700868-80700887 | Msa1128810:three_prime_UTR | 30.0% | |
| ACTATGCTTGGATAGAGATT+TGG | - | chr7_3:80699364-80699383 | None:intergenic | 35.0% | |
| !! | CTTAGGAGGTACTATTCATT+TGG | - | chr7_3:80699438-80699457 | None:intergenic | 35.0% |
| ! | TCAGTGCTACTCAATATCTT+AGG | - | chr7_3:80699455-80699474 | None:intergenic | 35.0% |
| GAGAACAACAATGTATAGTG+TGG | + | chr7_3:80699480-80699499 | Msa1128810:exon | 35.0% | |
| GCTGGTTAAATTGATCATCT+AGG | - | chr7_3:80699645-80699664 | None:intergenic | 35.0% | |
| GGCCCCTATACATAAAATAA+AGG | - | chr7_3:80699802-80699821 | None:intergenic | 35.0% | |
| TTCTAATTAATCCCAAGCAG+AGG | + | chr7_3:80699856-80699875 | Msa1128810:intron | 35.0% | |
| TTGATGTGATTAAGTCAACG+AGG | - | chr7_3:80699985-80700004 | None:intergenic | 35.0% | |
| TGATAAGGTCGTTGAGTTAT+TGG | + | chr7_3:80700160-80700179 | Msa1128810:intron | 35.0% | |
| TGTGAGGAGAAAAACATAGA+AGG | + | chr7_3:80700241-80700260 | Msa1128810:CDS | 35.0% | |
| GTGAGGAGAAAAACATAGAA+GGG | + | chr7_3:80700242-80700261 | Msa1128810:CDS | 35.0% | |
| !! | CTCAAACTTGGTTTTCACTA+AGG | - | chr7_3:80700399-80700418 | None:intergenic | 35.0% |
| TTTGCTTCTGTGATTGTAGA+TGG | + | chr7_3:80700513-80700532 | Msa1128810:intron | 35.0% | |
| CTCCTAGATAGTGAATGATA+AGG | + | chr7_3:80700566-80700585 | Msa1128810:exon | 35.0% | |
| TCCCTTATCATTCACTATCT+AGG | - | chr7_3:80700571-80700590 | None:intergenic | 35.0% | |
| TCCAGTCCTAAATTCTCAAT+TGG | + | chr7_3:80700668-80700687 | Msa1128810:three_prime_UTR | 35.0% | |
| ! | ACCAATTGAGAATTTAGGAC+TGG | - | chr7_3:80700672-80700691 | None:intergenic | 35.0% |
| !! | CCAACTTCCATTTTAACCAA+AGG | - | chr7_3:80700780-80700799 | None:intergenic | 35.0% |
| CCTTTGGTTAAAATGGAAGT+TGG | + | chr7_3:80700777-80700796 | Msa1128810:intron | 35.0% | |
| TTGGAATGTTTGATCTCTAC+CGG | + | chr7_3:80700824-80700843 | Msa1128810:three_prime_UTR | 35.0% | |
| ACTATGCTTGGATAGAGATT+TGG | - | chr7_3:80699364-80699383 | None:intergenic | 35.0% | |
| !! | CTTAGGAGGTACTATTCATT+TGG | - | chr7_3:80699438-80699457 | None:intergenic | 35.0% |
| ! | TCAGTGCTACTCAATATCTT+AGG | - | chr7_3:80699455-80699474 | None:intergenic | 35.0% |
| GAGAACAACAATGTATAGTG+TGG | + | chr7_3:80699480-80699499 | Msa1128810:exon | 35.0% | |
| GCTGGTTAAATTGATCATCT+AGG | - | chr7_3:80699645-80699664 | None:intergenic | 35.0% | |
| GGCCCCTATACATAAAATAA+AGG | - | chr7_3:80699802-80699821 | None:intergenic | 35.0% | |
| TTCTAATTAATCCCAAGCAG+AGG | + | chr7_3:80699856-80699875 | Msa1128810:intron | 35.0% | |
| TTGATGTGATTAAGTCAACG+AGG | - | chr7_3:80699985-80700004 | None:intergenic | 35.0% | |
| TGATAAGGTCGTTGAGTTAT+TGG | + | chr7_3:80700160-80700179 | Msa1128810:intron | 35.0% | |
| TGTGAGGAGAAAAACATAGA+AGG | + | chr7_3:80700241-80700260 | Msa1128810:CDS | 35.0% | |
| GTGAGGAGAAAAACATAGAA+GGG | + | chr7_3:80700242-80700261 | Msa1128810:CDS | 35.0% | |
| !! | CTCAAACTTGGTTTTCACTA+AGG | - | chr7_3:80700399-80700418 | None:intergenic | 35.0% |
| TTTGCTTCTGTGATTGTAGA+TGG | + | chr7_3:80700513-80700532 | Msa1128810:intron | 35.0% | |
| CTCCTAGATAGTGAATGATA+AGG | + | chr7_3:80700566-80700585 | Msa1128810:exon | 35.0% | |
| TCCCTTATCATTCACTATCT+AGG | - | chr7_3:80700571-80700590 | None:intergenic | 35.0% | |
| TCCAGTCCTAAATTCTCAAT+TGG | + | chr7_3:80700668-80700687 | Msa1128810:three_prime_UTR | 35.0% | |
| ! | ACCAATTGAGAATTTAGGAC+TGG | - | chr7_3:80700672-80700691 | None:intergenic | 35.0% |
| !! | CCAACTTCCATTTTAACCAA+AGG | - | chr7_3:80700780-80700799 | None:intergenic | 35.0% |
| CCTTTGGTTAAAATGGAAGT+TGG | + | chr7_3:80700777-80700796 | Msa1128810:intron | 35.0% | |
| TTGGAATGTTTGATCTCTAC+CGG | + | chr7_3:80700824-80700843 | Msa1128810:three_prime_UTR | 35.0% | |
| !! | AGGAGGTACTATTCATTTGG+TGG | - | chr7_3:80699435-80699454 | None:intergenic | 40.0% |
| ! | GTGCTACTCAATATCTTAGG+AGG | - | chr7_3:80699452-80699471 | None:intergenic | 40.0% |
| CATCTTGAAGTAGTTGAAGC+TGG | - | chr7_3:80699663-80699682 | None:intergenic | 40.0% | |
| CCACTTCAACAACAAAGTCA+GGG | - | chr7_3:80699693-80699712 | None:intergenic | 40.0% | |
| ACCACTTCAACAACAAAGTC+AGG | - | chr7_3:80699694-80699713 | None:intergenic | 40.0% | |
| TGTGATTAAGTCAACGAGGT+CGG | - | chr7_3:80699981-80700000 | None:intergenic | 40.0% | |
| TGCCTTCAAAAACTACTGTG+AGG | + | chr7_3:80700225-80700244 | Msa1128810:CDS | 40.0% | |
| ! | CTCCTCACAGTAGTTTTTGA+AGG | - | chr7_3:80700230-80700249 | None:intergenic | 40.0% |
| AAGCTTGCAAGACATAAAGC+AGG | + | chr7_3:80700367-80700386 | Msa1128810:CDS | 40.0% | |
| !! | CTTGAAGAGTGTCTCAAACT+TGG | - | chr7_3:80700411-80700430 | None:intergenic | 40.0% |
| ! | CAAGTTTGAGACACTCTTCA+AGG | + | chr7_3:80700409-80700428 | Msa1128810:CDS | 40.0% |
| TTGAGACACTCTTCAAGGTA+AGG | + | chr7_3:80700414-80700433 | Msa1128810:intron | 40.0% | |
| ! | TGGCTGCTTTGTATGCAAAT+TGG | - | chr7_3:80700614-80700633 | None:intergenic | 40.0% |
| !! | CATTTTAACCAAAGGAGCAG+AGG | - | chr7_3:80700772-80700791 | None:intergenic | 40.0% |
| CTCTGCTCCTTTGGTTAAAA+TGG | + | chr7_3:80700770-80700789 | Msa1128810:three_prime_UTR | 40.0% | |
| ACTTGTAGTGCCATCTTCAT+TGG | - | chr7_3:80700881-80700900 | None:intergenic | 40.0% | |
| !! | AGGAGGTACTATTCATTTGG+TGG | - | chr7_3:80699435-80699454 | None:intergenic | 40.0% |
| ! | GTGCTACTCAATATCTTAGG+AGG | - | chr7_3:80699452-80699471 | None:intergenic | 40.0% |
| CATCTTGAAGTAGTTGAAGC+TGG | - | chr7_3:80699663-80699682 | None:intergenic | 40.0% | |
| CCACTTCAACAACAAAGTCA+GGG | - | chr7_3:80699693-80699712 | None:intergenic | 40.0% | |
| ACCACTTCAACAACAAAGTC+AGG | - | chr7_3:80699694-80699713 | None:intergenic | 40.0% | |
| TGTGATTAAGTCAACGAGGT+CGG | - | chr7_3:80699981-80700000 | None:intergenic | 40.0% | |
| TGCCTTCAAAAACTACTGTG+AGG | + | chr7_3:80700225-80700244 | Msa1128810:CDS | 40.0% | |
| ! | CTCCTCACAGTAGTTTTTGA+AGG | - | chr7_3:80700230-80700249 | None:intergenic | 40.0% |
| AAGCTTGCAAGACATAAAGC+AGG | + | chr7_3:80700367-80700386 | Msa1128810:CDS | 40.0% | |
| !! | CTTGAAGAGTGTCTCAAACT+TGG | - | chr7_3:80700411-80700430 | None:intergenic | 40.0% |
| ! | CAAGTTTGAGACACTCTTCA+AGG | + | chr7_3:80700409-80700428 | Msa1128810:CDS | 40.0% |
| TTGAGACACTCTTCAAGGTA+AGG | + | chr7_3:80700414-80700433 | Msa1128810:intron | 40.0% | |
| ! | TGGCTGCTTTGTATGCAAAT+TGG | - | chr7_3:80700614-80700633 | None:intergenic | 40.0% |
| !! | CATTTTAACCAAAGGAGCAG+AGG | - | chr7_3:80700772-80700791 | None:intergenic | 40.0% |
| CTCTGCTCCTTTGGTTAAAA+TGG | + | chr7_3:80700770-80700789 | Msa1128810:three_prime_UTR | 40.0% | |
| ACTTGTAGTGCCATCTTCAT+TGG | - | chr7_3:80700881-80700900 | None:intergenic | 40.0% | |
| CACTTCTTCCCTCTTTCAAG+AGG | + | chr7_3:80699531-80699550 | Msa1128810:CDS | 45.0% | |
| !! | CCCTGACTTTGTTGTTGAAG+TGG | + | chr7_3:80699690-80699709 | Msa1128810:CDS | 45.0% |
| ! | TATTTTCCTGGCCTCTGCTT+GGG | - | chr7_3:80699870-80699889 | None:intergenic | 45.0% |
| ! | TTATTTTCCTGGCCTCTGCT+TGG | - | chr7_3:80699871-80699890 | None:intergenic | 45.0% |
| ! | AGCAGCAACTTTTTGCTGCA+GGG | + | chr7_3:80700536-80700555 | Msa1128810:CDS | 45.0% |
| GATATGGATGGATCACTGTC+TGG | - | chr7_3:80700720-80700739 | None:intergenic | 45.0% | |
| CTGAATAACCTCTGCTCCTT+TGG | + | chr7_3:80700761-80700780 | Msa1128810:three_prime_UTR | 45.0% | |
| CACTTCTTCCCTCTTTCAAG+AGG | + | chr7_3:80699531-80699550 | Msa1128810:CDS | 45.0% | |
| !! | CCCTGACTTTGTTGTTGAAG+TGG | + | chr7_3:80699690-80699709 | Msa1128810:CDS | 45.0% |
| ! | TATTTTCCTGGCCTCTGCTT+GGG | - | chr7_3:80699870-80699889 | None:intergenic | 45.0% |
| ! | TTATTTTCCTGGCCTCTGCT+TGG | - | chr7_3:80699871-80699890 | None:intergenic | 45.0% |
| ! | AGCAGCAACTTTTTGCTGCA+GGG | + | chr7_3:80700536-80700555 | Msa1128810:CDS | 45.0% |
| GATATGGATGGATCACTGTC+TGG | - | chr7_3:80700720-80700739 | None:intergenic | 45.0% | |
| CTGAATAACCTCTGCTCCTT+TGG | + | chr7_3:80700761-80700780 | Msa1128810:three_prime_UTR | 45.0% | |
| AGAGATTTGGCCCTCTTGTG+TGG | - | chr7_3:80699351-80699370 | None:intergenic | 50.0% | |
| GGCTCAGTTGCAAAGACAGT+TGG | + | chr7_3:80699501-80699520 | Msa1128810:CDS | 50.0% | |
| AGTGGTCGCTCTCTTCTTTG+AGG | + | chr7_3:80699708-80699727 | Msa1128810:CDS | 50.0% | |
| ATTAATCCCAAGCAGAGGCC+AGG | + | chr7_3:80699861-80699880 | Msa1128810:intron | 50.0% | |
| GCTCTTGTTCACCAGCTGAA+AGG | + | chr7_3:80699913-80699932 | Msa1128810:CDS | 50.0% | |
| ! | GAGCAGCAACTTTTTGCTGC+AGG | + | chr7_3:80700535-80700554 | Msa1128810:CDS | 50.0% |
| ! | GCAGCAACTTTTTGCTGCAG+GGG | + | chr7_3:80700537-80700556 | Msa1128810:CDS | 50.0% |
| ! | CAGCAACTTTTTGCTGCAGG+GGG | + | chr7_3:80700538-80700557 | Msa1128810:CDS | 50.0% |
| ! | ACTTTTTGCTGCAGGGGGTT+CGG | + | chr7_3:80700543-80700562 | Msa1128810:CDS | 50.0% |
| AGAGATTTGGCCCTCTTGTG+TGG | - | chr7_3:80699351-80699370 | None:intergenic | 50.0% | |
| GGCTCAGTTGCAAAGACAGT+TGG | + | chr7_3:80699501-80699520 | Msa1128810:CDS | 50.0% | |
| AGTGGTCGCTCTCTTCTTTG+AGG | + | chr7_3:80699708-80699727 | Msa1128810:CDS | 50.0% | |
| ATTAATCCCAAGCAGAGGCC+AGG | + | chr7_3:80699861-80699880 | Msa1128810:intron | 50.0% | |
| GCTCTTGTTCACCAGCTGAA+AGG | + | chr7_3:80699913-80699932 | Msa1128810:CDS | 50.0% | |
| ! | GAGCAGCAACTTTTTGCTGC+AGG | + | chr7_3:80700535-80700554 | Msa1128810:CDS | 50.0% |
| ! | GCAGCAACTTTTTGCTGCAG+GGG | + | chr7_3:80700537-80700556 | Msa1128810:CDS | 50.0% |
| ! | CAGCAACTTTTTGCTGCAGG+GGG | + | chr7_3:80700538-80700557 | Msa1128810:CDS | 50.0% |
| ! | ACTTTTTGCTGCAGGGGGTT+CGG | + | chr7_3:80700543-80700562 | Msa1128810:CDS | 50.0% |
| TGGAGCTGCTGCCTTTCAGC+TGG | - | chr7_3:80699927-80699946 | None:intergenic | 60.0% | |
| AGCTGAAAGGCAGCAGCTCC+AGG | + | chr7_3:80699926-80699945 | Msa1128810:CDS | 60.0% | |
| TGGAGCTGCTGCCTTTCAGC+TGG | - | chr7_3:80699927-80699946 | None:intergenic | 60.0% | |
| AGCTGAAAGGCAGCAGCTCC+AGG | + | chr7_3:80699926-80699945 | Msa1128810:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 80699341 | 80700997 | 80699341 | ID=Msa1128810;Name=Msa1128810 |
| chr7_3 | mRNA | 80699341 | 80700997 | 80699341 | ID=Msa1128810-mRNA-1;Parent=Msa1128810;Name=Msa1128810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=149|1|1|1|0.83|0.71|7|393|151 |
| chr7_3 | exon | 80699341 | 80699552 | 80699341 | ID=Msa1128810-mRNA-1:exon:23242;Parent=Msa1128810-mRNA-1 |
| chr7_3 | exon | 80699637 | 80699767 | 80699637 | ID=Msa1128810-mRNA-1:exon:23243;Parent=Msa1128810-mRNA-1 |
| chr7_3 | exon | 80699876 | 80699947 | 80699876 | ID=Msa1128810-mRNA-1:exon:23244;Parent=Msa1128810-mRNA-1 |
| chr7_3 | exon | 80700192 | 80700263 | 80700192 | ID=Msa1128810-mRNA-1:exon:23245;Parent=Msa1128810-mRNA-1 |
| chr7_3 | exon | 80700358 | 80700430 | 80700358 | ID=Msa1128810-mRNA-1:exon:23246;Parent=Msa1128810-mRNA-1 |
| chr7_3 | exon | 80700532 | 80700790 | 80700532 | ID=Msa1128810-mRNA-1:exon:23247;Parent=Msa1128810-mRNA-1 |
| chr7_3 | exon | 80700819 | 80700997 | 80700819 | ID=Msa1128810-mRNA-1:exon:23248;Parent=Msa1128810-mRNA-1 |
| chr7_3 | five_prime_UTR | 80699341 | 80699489 | 80699341 | ID=Msa1128810-mRNA-1:five_prime_utr;Parent=Msa1128810-mRNA-1 |
| chr7_3 | CDS | 80699490 | 80699552 | 80699490 | ID=Msa1128810-mRNA-1:cds;Parent=Msa1128810-mRNA-1 |
| chr7_3 | CDS | 80699637 | 80699767 | 80699637 | ID=Msa1128810-mRNA-1:cds;Parent=Msa1128810-mRNA-1 |
| chr7_3 | CDS | 80699876 | 80699947 | 80699876 | ID=Msa1128810-mRNA-1:cds;Parent=Msa1128810-mRNA-1 |
| chr7_3 | CDS | 80700192 | 80700263 | 80700192 | ID=Msa1128810-mRNA-1:cds;Parent=Msa1128810-mRNA-1 |
| chr7_3 | CDS | 80700358 | 80700430 | 80700358 | ID=Msa1128810-mRNA-1:cds;Parent=Msa1128810-mRNA-1 |
| chr7_3 | CDS | 80700532 | 80700576 | 80700532 | ID=Msa1128810-mRNA-1:cds;Parent=Msa1128810-mRNA-1 |
| chr7_3 | three_prime_UTR | 80700577 | 80700790 | 80700577 | ID=Msa1128810-mRNA-1:three_prime_utr;Parent=Msa1128810-mRNA-1 |
| chr7_3 | three_prime_UTR | 80700819 | 80700997 | 80700819 | ID=Msa1128810-mRNA-1:three_prime_utr;Parent=Msa1128810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
