AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0101530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101530 MtrunA17_Chr1g0154701 98.131 428 8 0 1 428 1 428 0.0 874
Msa0101530 MtrunA17_Chr4g0034611 73.409 440 101 3 1 428 1 436 0.0 679
Msa0101530 MtrunA17_Chr4g0034621 69.767 430 123 2 5 427 7 436 0.0 618
Msa0101530 MtrunA17_Chr4g0034641 65.581 430 136 3 5 427 7 431 0.0 586
Msa0101530 MtrunA17_Chr4g0034661 68.545 426 119 5 5 427 7 420 0.0 583
Msa0101530 MtrunA17_Chr4g0034651 64.896 433 130 3 5 427 40 460 0.0 578
Msa0101530 MtrunA17_Chr4g0034631 64.651 430 138 3 5 427 7 429 0.0 568
Msa0101530 MtrunA17_Chr5g0408171 27.805 205 131 6 145 344 103 295 9.40e-14 73.2
Msa0101530 MtrunA17_Chr8g0367951 33.929 112 68 3 157 263 391 501 9.35e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0101530 AT1G19360.1 70.276 434 117 3 1 428 1 428 0.0 641
Msa0101530 AT1G19360.2 70.276 434 117 3 1 428 1 428 0.0 641
Msa0101530 AT1G75110.1 68.736 435 122 4 1 428 1 428 0.0 626
Msa0101530 AT1G75120.1 61.631 417 141 2 11 427 5 402 0.0 532
Msa0101530 AT2G35610.1 25.120 418 238 17 3 398 8 372 1.05e-12 70.5

Find 105 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCATCCAGTTGACTTTA+AGG 0.061744 1_3:-8197919 Msa0101530:five_prime_UTR
TGTCTTTGATGAACCTAAAA+TGG 0.118559 1_3:-8195872 Msa0101530:CDS
AGTTGGCATATCTAATTATT+TGG 0.214194 1_3:-8196187 Msa0101530:CDS
TATGCCAACTTTCTTGATAT+TGG 0.231969 1_3:+8196200 None:intergenic
CCCCTTTGATTATATTTATA+GGG 0.245145 1_3:-8195956 Msa0101530:CDS
TTCATCCTTGCAAGTTTATC+AGG 0.257490 1_3:+8195535 None:intergenic
ACCCCTTTGATTATATTTAT+AGG 0.264534 1_3:-8195957 Msa0101530:CDS
CATAGCAATCATACAGCTTA+TGG 0.265461 1_3:-8195904 Msa0101530:CDS
TAAAGAGGTCGTTGTTGTTC+TGG 0.289152 1_3:-8196262 Msa0101530:CDS
CTTAGCTAATTAATCTTACT+TGG 0.292242 1_3:-8195181 Msa0101530:three_prime_UTR
ATGCTCATACCATGAGAATA+TGG 0.294158 1_3:-8195837 Msa0101530:CDS
GAACCTTACTGTTCATAAAA+AGG 0.300928 1_3:+8195629 None:intergenic
AAACACAAGGCTGGTCCTTT+TGG 0.309663 1_3:-8196378 Msa0101530:CDS
TTCAACGCATTAACTTGTTC+TGG 0.347234 1_3:+8196531 None:intergenic
AATTAATCTTACTTGGATCT+TGG 0.358924 1_3:-8195174 Msa0101530:three_prime_UTR
AGCTCAATTGAAGGAATTGT+TGG 0.375607 1_3:+8195784 None:intergenic
TATCAAAATCGAAATCAATA+TGG 0.388493 1_3:-8195437 Msa0101530:three_prime_UTR
CGGAAAACCTTAAAGTCAAC+TGG 0.393527 1_3:+8197912 None:intergenic
GGTGGGAATCATGCTGTCTC+TGG 0.396405 1_3:-8196063 Msa0101530:CDS
CCTTCACATCCTGGTTATGA+TGG 0.408046 1_3:-8195685 Msa0101530:CDS
TCCGAGATGCGGTGATTGAA+TGG 0.416396 1_3:+8197827 None:intergenic
CCCTAGATTGGCAAAACTCT+TGG 0.417448 1_3:-8196301 Msa0101530:CDS
TTCCACTCTACTACAACAAT+TGG 0.419689 1_3:+8195380 None:intergenic
TGATGAACCTAAAATGGGTT+GGG 0.421735 1_3:-8195866 Msa0101530:CDS
AAGAAGAACGCCGATGAAAA+CGG 0.426281 1_3:+8197795 None:intergenic
TTCTGTTATTCCCGATGAAT+CGG 0.434960 1_3:-8196328 Msa0101530:CDS
TAATGTGTTGGAGATGTTAC+AGG 0.437641 1_3:-8196232 Msa0101530:CDS
CCCCGATGGTTCTGATTAGT+AGG 0.441819 1_3:-8195461 Msa0101530:exon
TCCCTATAAATATAATCAAA+GGG 0.442068 1_3:+8195955 None:intergenic
ACCAACCTTGTGACTGAGAA+TGG 0.449721 1_3:+8197711 None:intergenic
GAATTCTGAGCTGAAGAAGC+AGG 0.473704 1_3:-8196481 Msa0101530:CDS
TCTAATGGAGAAGCTGCGTT+TGG 0.475422 1_3:-8196451 Msa0101530:CDS
ATCCCTATAAATATAATCAA+AGG 0.485270 1_3:+8195954 None:intergenic
GAAGCAGGTGAAAGGTCTAA+TGG 0.486719 1_3:-8196466 Msa0101530:CDS
TGAATCGGTGAACCCTAGAT+TGG 0.487843 1_3:-8196313 Msa0101530:CDS
CGATCTAAAAGCTCAATTGA+AGG 0.489088 1_3:+8195775 None:intergenic
ATTGAATCAACACCTTGATC+CGG 0.489958 1_3:+8196096 None:intergenic
TAGTTGAGTTCTATGTCAAC+GGG 0.490164 1_3:-8195507 Msa0101530:CDS
GGAAATTGCTATTTATAAAG+AGG 0.490420 1_3:-8196277 Msa0101530:CDS
GTTGATTCAATTGCCAAGTC+GGG 0.491275 1_3:-8196084 Msa0101530:CDS
ACGGAACAGTTTGTTGTGCT+TGG 0.491386 1_3:-8196405 Msa0101530:CDS
AATGGAGAAGCTGCGTTTGG+CGG 0.496977 1_3:-8196448 Msa0101530:CDS
TTGATGAACCTAAAATGGGT+TGG 0.498626 1_3:-8195867 Msa0101530:CDS
TGCTCATACCATGAGAATAT+GGG 0.499575 1_3:-8195836 Msa0101530:CDS
TCCTACTAATCAGAACCATC+GGG 0.500121 1_3:+8195460 None:intergenic
TCTAGGGTTCACCGATTCAT+CGG 0.501111 1_3:+8196317 None:intergenic
CTAGGGTTCACCGATTCATC+GGG 0.503259 1_3:+8196318 None:intergenic
AGAATATGGGTATATAACTC+TGG 0.505845 1_3:-8195823 Msa0101530:CDS
TTGAGAGAGTTTCTGCAACT+AGG 0.508202 1_3:-8196024 Msa0101530:CDS
TTCACCAATATCAAGAAAGT+TGG 0.508424 1_3:-8196204 Msa0101530:CDS
GGCTTTCTAAAGAGAAAGCA+TGG 0.511884 1_3:-8195741 Msa0101530:CDS
AGGTTACAGCGTTCTCCTCT+CGG 0.515400 1_3:-8196004 Msa0101530:CDS
CACTCTACTACAACAATTGG+AGG 0.517175 1_3:+8195383 None:intergenic
GTCTTTGATGAACCTAAAAT+GGG 0.519326 1_3:-8195871 Msa0101530:CDS
GCTGTTTATCAAATTTCGAT+CGG 0.522069 1_3:+8197892 None:intergenic
ATCCTACTAATCAGAACCAT+CGG 0.522896 1_3:+8195459 None:intergenic
TATAGAAGAGACCCGGATCA+AGG 0.525636 1_3:-8196108 Msa0101530:CDS
AGCATGATTCCCACCCGACT+TGG 0.527468 1_3:+8196071 None:intergenic
GCGTTTGGCGGAGCAAGGAA+AGG 0.528394 1_3:-8196436 Msa0101530:CDS
TAGATTGGCAAAACTCTTGG+CGG 0.530183 1_3:-8196298 Msa0101530:CDS
TCCGGGTCTCTTCTATAGAC+AGG 0.531058 1_3:+8196114 None:intergenic
GATTCAATTGCCAAGTCGGG+TGG 0.535736 1_3:-8196081 Msa0101530:CDS
TTGAATCAACACCTTGATCC+GGG 0.540173 1_3:+8196097 None:intergenic
TGTTGATTCAATTGCCAAGT+CGG 0.547442 1_3:-8196085 Msa0101530:CDS
AAGCTGCGTTTGGCGGAGCA+AGG 0.554092 1_3:-8196441 Msa0101530:CDS
CTCCAATTGTTGTAGTAGAG+TGG 0.556926 1_3:-8195382 Msa0101530:three_prime_UTR
CCATCATAACCAGGATGTGA+AGG 0.557644 1_3:+8195685 None:intergenic
GTAGTTGAGTTCTATGTCAA+CGG 0.558544 1_3:-8195508 Msa0101530:CDS
ATTTGATAAACAGCAATGGC+AGG 0.559173 1_3:-8197883 Msa0101530:exon
TCTGGCTAACACTAATGTGT+TGG 0.561756 1_3:-8196244 Msa0101530:CDS
AGAGCCTTGACAGTGCCAAA+AGG 0.564867 1_3:+8196363 None:intergenic
ACCATTCAATCACCGCATCT+CGG 0.566295 1_3:-8197828 Msa0101530:CDS
GAGCTGAAGAAGCAGGTGAA+AGG 0.566632 1_3:-8196474 Msa0101530:CDS
TATTTATAGGGATTCAGATG+TGG 0.569522 1_3:-8195944 Msa0101530:CDS
TGTTGGAGATGTTACAGGTA+TGG 0.571269 1_3:-8196227 Msa0101530:CDS
CGTTTGGCGGAGCAAGGAAA+GGG 0.575655 1_3:-8196435 Msa0101530:CDS
TAGTTAACATGTACAATCAC+GGG 0.581284 1_3:+8195562 None:intergenic
ATAGTTAACATGTACAATCA+CGG 0.586101 1_3:+8195561 None:intergenic
GTTATATACCCATATTCTCA+TGG 0.587662 1_3:+8195828 None:intergenic
CGAAATTTGATAAACAGCAA+TGG 0.589731 1_3:-8197887 Msa0101530:exon
GCAAGGAAAGGGTCATGCTA+CGG 0.593930 1_3:-8196424 Msa0101530:CDS
ATCATCCTGATAAACTTGCA+AGG 0.604744 1_3:-8195540 Msa0101530:CDS
AAACCTTAAAGTCAACTGGA+TGG 0.617086 1_3:+8197916 None:intergenic
CATCATAACCAGGATGTGAA+GGG 0.619342 1_3:+8195686 None:intergenic
ATTCAATTGCCAAGTCGGGT+GGG 0.620463 1_3:-8196080 Msa0101530:CDS
TCCTGTCTATAGAAGAGACC+CGG 0.625262 1_3:-8196115 Msa0101530:CDS
GATTCATCGGGAATAACAGA+AGG 0.626071 1_3:+8196330 None:intergenic
GCGCTCGACAGTTTCCCCGA+TGG 0.627821 1_3:-8195475 Msa0101530:CDS
GCATGAAGTCCATCATAACC+AGG 0.631266 1_3:+8195676 None:intergenic
CCCTATAAATATAATCAAAG+GGG 0.636439 1_3:+8195956 None:intergenic
TTTCTCTTTAGAAAGCCGAT+CGG 0.638101 1_3:+8195747 None:intergenic
TCATGCTGCAAAGAGAACAA+TGG 0.639030 1_3:-8195659 Msa0101530:CDS
GATGTGGAGTCAATGTCAGA+TGG 0.642589 1_3:-8195928 Msa0101530:CDS
CCTTAAAGTCAACTGGATGG+AGG 0.643113 1_3:+8197919 None:intergenic
GGCAACGGCGATCCGAGATG+CGG 0.643444 1_3:+8197816 None:intergenic
AACGCCGATGAAAACGGCAA+CGG 0.643805 1_3:+8197801 None:intergenic
CTTGGTGAGAAACACAAGGC+TGG 0.654456 1_3:-8196387 Msa0101530:CDS
GCTTTCTAAAGAGAAAGCAT+GGG 0.666613 1_3:-8195740 Msa0101530:CDS
GAGAATGGTCTGAGTTGATG+CGG 0.680850 1_3:+8197726 None:intergenic
AATGGTCTGAGTTGATGCGG+TGG 0.700511 1_3:+8197729 None:intergenic
TCAGACCATTCTCAGTCACA+AGG 0.710546 1_3:-8197716 Msa0101530:intron
ACACAATATCGACATCCGAG+AGG 0.744525 1_3:+8195989 None:intergenic
CCTACTAATCAGAACCATCG+GGG 0.749180 1_3:+8195461 None:intergenic
TGTGCTTGGTGAGAAACACA+AGG 0.756567 1_3:-8196391 Msa0101530:CDS
GTGGAAATGAAGAAACCGTG+TGG 0.802724 1_3:+8197748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATATTTATATGCTTT+AGG + chr1_3:8196133-8196152 None:intergenic 10.0%
!!! ATAACTTGTTTATCAAAATA+TGG - chr1_3:8195795-8195814 Msa0101530:CDS 15.0%
!!! AATAATGTGGATTATATTAA+TGG - chr1_3:8196202-8196221 Msa0101530:CDS 15.0%
!!! TAATGGATTTTATATACTTT+AGG - chr1_3:8196219-8196238 Msa0101530:CDS 15.0%
!!! AATGGATTTTATATACTTTA+GGG - chr1_3:8196220-8196239 Msa0101530:CDS 15.0%
!!! ATACAAAATACAAATCTTTT+TGG + chr1_3:8197716-8197735 None:intergenic 15.0%
!!! ACAAATTTTCACATACATTA+GGG + chr1_3:8196161-8196180 None:intergenic 20.0%
!! TCCCTATAAATATAATCAAA+GGG + chr1_3:8197167-8197186 None:intergenic 20.0%
!! ATCCCTATAAATATAATCAA+AGG + chr1_3:8197168-8197187 None:intergenic 20.0%
!! TATCAAAATCGAAATCAATA+TGG - chr1_3:8197682-8197701 Msa0101530:intron 20.0%
!!! TAAGTTTTTTGAGACGATTT+GGG - chr1_3:8195484-8195503 Msa0101530:CDS 25.0%
! GGTCTAATATTTACAAAACT+TGG - chr1_3:8195816-8195835 Msa0101530:CDS 25.0%
! AAGTTAGCCATTCAATTTAT+GGG - chr1_3:8195902-8195921 Msa0101530:CDS 25.0%
! TACTTTACCCATAAATTGAA+TGG + chr1_3:8195912-8195931 None:intergenic 25.0%
! TAGCAAATCATATAATGCAT+CGG - chr1_3:8196063-8196082 Msa0101530:CDS 25.0%
! ATACTTCAGAACTAAATTGA+TGG + chr1_3:8196095-8196114 None:intergenic 25.0%
!! GACAAATTTTCACATACATT+AGG + chr1_3:8196162-8196181 None:intergenic 25.0%
! ATGTTATTAAGATGTGGTAA+GGG + chr1_3:8196280-8196299 None:intergenic 25.0%
! TAATCCATGTTATTAAGATG+TGG + chr1_3:8196286-8196305 None:intergenic 25.0%
!! CATCTTAATAACATGGATTA+AGG - chr1_3:8196286-8196305 Msa0101530:CDS 25.0%
!!! GGAAATTGCTATTTATAAAG+AGG - chr1_3:8196842-8196861 Msa0101530:intron 25.0%
! AGTTGGCATATCTAATTATT+TGG - chr1_3:8196932-8196951 Msa0101530:intron 25.0%
! ACCCCTTTGATTATATTTAT+AGG - chr1_3:8197162-8197181 Msa0101530:intron 25.0%
! CCCTATAAATATAATCAAAG+GGG + chr1_3:8197166-8197185 None:intergenic 25.0%
! CCCCTTTGATTATATTTATA+GGG - chr1_3:8197163-8197182 Msa0101530:intron 25.0%
! ATAGTTAACATGTACAATCA+CGG + chr1_3:8197561-8197580 None:intergenic 25.0%
!!! TTTTATTTATCTCTCAGGAT+CGG - chr1_3:8197767-8197786 Msa0101530:CDS 25.0%
! CTTAGCTAATTAATCTTACT+TGG - chr1_3:8197938-8197957 Msa0101530:five_prime_UTR 25.0%
! AATTAATCTTACTTGGATCT+TGG - chr1_3:8197945-8197964 Msa0101530:five_prime_UTR 25.0%
GCTGTTTATCAAATTTCGAT+CGG + chr1_3:8195230-8195249 None:intergenic 30.0%
CGAAATTTGATAAACAGCAA+TGG - chr1_3:8195232-8195251 Msa0101530:three_prime_UTR 30.0%
!!! GTAAGTTTTTTGAGACGATT+TGG - chr1_3:8195483-8195502 Msa0101530:CDS 30.0%
!!! TTTTAGCTCCTTTCTACTTA+AGG - chr1_3:8195575-8195594 Msa0101530:CDS 30.0%
! TTTAGCTCCTTTCTACTTAA+GGG - chr1_3:8195576-8195595 Msa0101530:CDS 30.0%
AAACATACCCTTAAGTAGAA+AGG + chr1_3:8195586-8195605 None:intergenic 30.0%
GTAACTGCTATAACATCATT+AGG - chr1_3:8195838-8195857 Msa0101530:CDS 30.0%
GAAGTTAGCCATTCAATTTA+TGG - chr1_3:8195901-8195920 Msa0101530:CDS 30.0%
!! TAGTTCTGAACTAATCACAA+TGG - chr1_3:8196025-8196044 Msa0101530:CDS 30.0%
TCCACATTATTAAGATGTCA+GGG + chr1_3:8196193-8196212 None:intergenic 30.0%
ATCCACATTATTAAGATGTC+AGG + chr1_3:8196194-8196213 None:intergenic 30.0%
TAGGGACTACTTATATACTT+AGG - chr1_3:8196238-8196257 Msa0101530:CDS 30.0%
CATGTTATTAAGATGTGGTA+AGG + chr1_3:8196281-8196300 None:intergenic 30.0%
CTTACCACATCTTAATAACA+TGG - chr1_3:8196279-8196298 Msa0101530:CDS 30.0%
TGGATTAAGGAACTCAATAT+AGG - chr1_3:8196299-8196318 Msa0101530:CDS 30.0%
CATGTTAAGGATATCAAAAG+TGG + chr1_3:8196395-8196414 None:intergenic 30.0%
! TGTTATGTTGTGTCATTAGA+TGG - chr1_3:8196545-8196564 Msa0101530:CDS 30.0%
TTCACCAATATCAAGAAAGT+TGG - chr1_3:8196915-8196934 Msa0101530:intron 30.0%
TATGCCAACTTTCTTGATAT+TGG + chr1_3:8196922-8196941 None:intergenic 30.0%
TATTTATAGGGATTCAGATG+TGG - chr1_3:8197175-8197194 Msa0101530:intron 30.0%
TGTCTTTGATGAACCTAAAA+TGG - chr1_3:8197247-8197266 Msa0101530:intron 30.0%
GTCTTTGATGAACCTAAAAT+GGG - chr1_3:8197248-8197267 Msa0101530:intron 30.0%
GTTATATACCCATATTCTCA+TGG + chr1_3:8197294-8197313 None:intergenic 30.0%
AGAATATGGGTATATAACTC+TGG - chr1_3:8197296-8197315 Msa0101530:intron 30.0%
! GTACCTTTTTATGAACAGTA+AGG - chr1_3:8197487-8197506 Msa0101530:intron 30.0%
GAACCTTACTGTTCATAAAA+AGG + chr1_3:8197493-8197512 None:intergenic 30.0%
TAGTTAACATGTACAATCAC+GGG + chr1_3:8197560-8197579 None:intergenic 30.0%
!! GTCTCTTTTATTTATCTCTC+AGG - chr1_3:8197762-8197781 Msa0101530:CDS 30.0%
! CTCACTGTTCTTTCTATTTT+CGG - chr1_3:8197796-8197815 Msa0101530:CDS 30.0%
AAACCTTAAAGTCAACTGGA+TGG + chr1_3:8195206-8195225 None:intergenic 35.0%
ATTTGATAAACAGCAATGGC+AGG - chr1_3:8195236-8195255 Msa0101530:three_prime_UTR 35.0%
! GATTGAATGGTTTTTGTCTC+TGG + chr1_3:8195282-8195301 None:intergenic 35.0%
!! AAAGTGTCTGTTTTCAGCTT+AGG - chr1_3:8195531-8195550 Msa0101530:CDS 35.0%
! TGTGATTAGTTCAGAACTAG+TGG + chr1_3:8196024-8196043 None:intergenic 35.0%
TCCCTGACATCTTAATAATG+TGG - chr1_3:8196189-8196208 Msa0101530:CDS 35.0%
!! TTCAACGCATTAACTTGTTC+TGG + chr1_3:8196591-8196610 None:intergenic 35.0%
TTCTGTTATTCCCGATGAAT+CGG - chr1_3:8196791-8196810 Msa0101530:intron 35.0%
TAATGTGTTGGAGATGTTAC+AGG - chr1_3:8196887-8196906 Msa0101530:intron 35.0%
ATTGAATCAACACCTTGATC+CGG + chr1_3:8197026-8197045 None:intergenic 35.0%
!! TGTTGATTCAATTGCCAAGT+CGG - chr1_3:8197034-8197053 Msa0101530:intron 35.0%
CATAGCAATCATACAGCTTA+TGG - chr1_3:8197215-8197234 Msa0101530:intron 35.0%
TTGATGAACCTAAAATGGGT+TGG - chr1_3:8197252-8197271 Msa0101530:intron 35.0%
! TGATGAACCTAAAATGGGTT+GGG - chr1_3:8197253-8197272 Msa0101530:intron 35.0%
ATGCTCATACCATGAGAATA+TGG - chr1_3:8197282-8197301 Msa0101530:intron 35.0%
TGCTCATACCATGAGAATAT+GGG - chr1_3:8197283-8197302 Msa0101530:intron 35.0%
AGCTCAATTGAAGGAATTGT+TGG + chr1_3:8197338-8197357 None:intergenic 35.0%
CGATCTAAAAGCTCAATTGA+AGG + chr1_3:8197347-8197366 None:intergenic 35.0%
! TTTCTCTTTAGAAAGCCGAT+CGG + chr1_3:8197375-8197394 None:intergenic 35.0%
! GCTTTCTAAAGAGAAAGCAT+GGG - chr1_3:8197379-8197398 Msa0101530:intron 35.0%
ATCATCCTGATAAACTTGCA+AGG - chr1_3:8197579-8197598 Msa0101530:intron 35.0%
TTCATCCTTGCAAGTTTATC+AGG + chr1_3:8197587-8197606 None:intergenic 35.0%
GTAGTTGAGTTCTATGTCAA+CGG - chr1_3:8197611-8197630 Msa0101530:intron 35.0%
TAGTTGAGTTCTATGTCAAC+GGG - chr1_3:8197612-8197631 Msa0101530:intron 35.0%
ATCCTACTAATCAGAACCAT+CGG + chr1_3:8197663-8197682 None:intergenic 35.0%
TTCCACTCTACTACAACAAT+TGG + chr1_3:8197742-8197761 None:intergenic 35.0%
CGGAAAACCTTAAAGTCAAC+TGG + chr1_3:8195210-8195229 None:intergenic 40.0%
AAGAAGAACGCCGATGAAAA+CGG + chr1_3:8195327-8195346 None:intergenic 40.0%
! TTCGCTTTCTTTTCACCACA+CGG - chr1_3:8195356-8195375 Msa0101530:three_prime_UTR 40.0%
TATCCTTAACATGTGCCCTT+AGG - chr1_3:8196402-8196421 Msa0101530:CDS 40.0%
ATCCTTAACATGTGCCCTTA+GGG - chr1_3:8196403-8196422 Msa0101530:CDS 40.0%
GATTCATCGGGAATAACAGA+AGG + chr1_3:8196792-8196811 None:intergenic 40.0%
! CCAAGAGTTTTGCCAATCTA+GGG + chr1_3:8196821-8196840 None:intergenic 40.0%
TAGATTGGCAAAACTCTTGG+CGG - chr1_3:8196821-8196840 Msa0101530:intron 40.0%
! TAAAGAGGTCGTTGTTGTTC+TGG - chr1_3:8196857-8196876 Msa0101530:intron 40.0%
TCTGGCTAACACTAATGTGT+TGG - chr1_3:8196875-8196894 Msa0101530:intron 40.0%
TGTTGGAGATGTTACAGGTA+TGG - chr1_3:8196892-8196911 Msa0101530:intron 40.0%
TTGAATCAACACCTTGATCC+GGG + chr1_3:8197025-8197044 None:intergenic 40.0%
! GTTGATTCAATTGCCAAGTC+GGG - chr1_3:8197035-8197054 Msa0101530:intron 40.0%
TTGAGAGAGTTTCTGCAACT+AGG - chr1_3:8197095-8197114 Msa0101530:intron 40.0%
! TATCTAGCCCAACCCATTTT+AGG + chr1_3:8197263-8197282 None:intergenic 40.0%
! GGCTTTCTAAAGAGAAAGCA+TGG - chr1_3:8197378-8197397 Msa0101530:intron 40.0%
CATCATAACCAGGATGTGAA+GGG + chr1_3:8197436-8197455 None:intergenic 40.0%
TCATGCTGCAAAGAGAACAA+TGG - chr1_3:8197460-8197479 Msa0101530:intron 40.0%
TCCTACTAATCAGAACCATC+GGG + chr1_3:8197662-8197681 None:intergenic 40.0%
CACTCTACTACAACAATTGG+AGG + chr1_3:8197739-8197758 None:intergenic 40.0%
CTCCAATTGTTGTAGTAGAG+TGG - chr1_3:8197737-8197756 Msa0101530:CDS 40.0%
CCTTAAAGTCAACTGGATGG+AGG + chr1_3:8195203-8195222 None:intergenic 45.0%
! CCTCCATCCAGTTGACTTTA+AGG - chr1_3:8195200-8195219 Msa0101530:three_prime_UTR 45.0%
ACCATTCAATCACCGCATCT+CGG - chr1_3:8195291-8195310 Msa0101530:three_prime_UTR 45.0%
! GTTTTCATCGGCGTTCTTCT+TGG - chr1_3:8195326-8195345 Msa0101530:three_prime_UTR 45.0%
GTGGAAATGAAGAAACCGTG+TGG + chr1_3:8195374-8195393 None:intergenic 45.0%
!! GAGAATGGTCTGAGTTGATG+CGG + chr1_3:8195396-8195415 None:intergenic 45.0%
TCAGACCATTCTCAGTCACA+AGG - chr1_3:8195403-8195422 Msa0101530:three_prime_UTR 45.0%
ACCATTCTCAGTCACAAGGT+TGG - chr1_3:8195407-8195426 Msa0101530:three_prime_UTR 45.0%
ACCAACCTTGTGACTGAGAA+TGG + chr1_3:8195411-8195430 None:intergenic 45.0%
! TTCTCAGTCACAAGGTTGGT+TGG - chr1_3:8195411-8195430 Msa0101530:three_prime_UTR 45.0%
! CTGACATGTGTTTTGTGCGA+CGG - chr1_3:8195634-8195653 Msa0101530:CDS 45.0%
! TGTGCTAACTTGTGCCCTAA+GGG + chr1_3:8196420-8196439 None:intergenic 45.0%
! TTGTGCTAACTTGTGCCCTA+AGG + chr1_3:8196421-8196440 None:intergenic 45.0%
GAATTCTGAGCTGAAGAAGC+AGG - chr1_3:8196638-8196657 Msa0101530:intron 45.0%
GAAGCAGGTGAAAGGTCTAA+TGG - chr1_3:8196653-8196672 Msa0101530:intron 45.0%
TCTAATGGAGAAGCTGCGTT+TGG - chr1_3:8196668-8196687 Msa0101530:intron 45.0%
!! ACGGAACAGTTTGTTGTGCT+TGG - chr1_3:8196714-8196733 Msa0101530:intron 45.0%
! TGTGCTTGGTGAGAAACACA+AGG - chr1_3:8196728-8196747 Msa0101530:intron 45.0%
!! AAACACAAGGCTGGTCCTTT+TGG - chr1_3:8196741-8196760 Msa0101530:intron 45.0%
!! TCTAGGGTTCACCGATTCAT+CGG + chr1_3:8196805-8196824 None:intergenic 45.0%
TGAATCGGTGAACCCTAGAT+TGG - chr1_3:8196806-8196825 Msa0101530:intron 45.0%
CCCTAGATTGGCAAAACTCT+TGG - chr1_3:8196818-8196837 Msa0101530:intron 45.0%
! GCCAAGAGTTTTGCCAATCT+AGG + chr1_3:8196822-8196841 None:intergenic 45.0%
TCCTGTCTATAGAAGAGACC+CGG - chr1_3:8197004-8197023 Msa0101530:intron 45.0%
TATAGAAGAGACCCGGATCA+AGG - chr1_3:8197011-8197030 Msa0101530:intron 45.0%
ATTCAATTGCCAAGTCGGGT+GGG - chr1_3:8197039-8197058 Msa0101530:intron 45.0%
ACACAATATCGACATCCGAG+AGG + chr1_3:8197133-8197152 None:intergenic 45.0%
GATGTGGAGTCAATGTCAGA+TGG - chr1_3:8197191-8197210 Msa0101530:intron 45.0%
! TTTTAGATCGCGTTGCCGAT+CGG - chr1_3:8197357-8197376 Msa0101530:intron 45.0%
! CTCTTTTACCCTTCACATCC+TGG - chr1_3:8197425-8197444 Msa0101530:intron 45.0%
CCATCATAACCAGGATGTGA+AGG + chr1_3:8197437-8197456 None:intergenic 45.0%
CCTTCACATCCTGGTTATGA+TGG - chr1_3:8197434-8197453 Msa0101530:intron 45.0%
GCATGAAGTCCATCATAACC+AGG + chr1_3:8197446-8197465 None:intergenic 45.0%
CCTACTAATCAGAACCATCG+GGG + chr1_3:8197661-8197680 None:intergenic 45.0%
TCCGAGATGCGGTGATTGAA+TGG + chr1_3:8195295-8195314 None:intergenic 50.0%
!!! ATCGCCGTTGCCGTTTTCAT+CGG - chr1_3:8195314-8195333 Msa0101530:three_prime_UTR 50.0%
AACGCCGATGAAAACGGCAA+CGG + chr1_3:8195321-8195340 None:intergenic 50.0%
!! AATGGTCTGAGTTGATGCGG+TGG + chr1_3:8195393-8195412 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG + chr1_3:8196408-8196427 None:intergenic 50.0%
GAGCTGAAGAAGCAGGTGAA+AGG - chr1_3:8196645-8196664 Msa0101530:intron 50.0%
AATGGAGAAGCTGCGTTTGG+CGG - chr1_3:8196671-8196690 Msa0101530:intron 50.0%
GCAAGGAAAGGGTCATGCTA+CGG - chr1_3:8196695-8196714 Msa0101530:intron 50.0%
CTTGGTGAGAAACACAAGGC+TGG - chr1_3:8196732-8196751 Msa0101530:intron 50.0%
! TGGTCCTTTTGGCACTGTCA+AGG - chr1_3:8196752-8196771 Msa0101530:intron 50.0%
AGAGCCTTGACAGTGCCAAA+AGG + chr1_3:8196759-8196778 None:intergenic 50.0%
!! CTAGGGTTCACCGATTCATC+GGG + chr1_3:8196804-8196823 None:intergenic 50.0%
TCCGGGTCTCTTCTATAGAC+AGG + chr1_3:8197008-8197027 None:intergenic 50.0%
GATTCAATTGCCAAGTCGGG+TGG - chr1_3:8197038-8197057 Msa0101530:intron 50.0%
AGGTTACAGCGTTCTCCTCT+CGG - chr1_3:8197115-8197134 Msa0101530:intron 50.0%
!! CCCCGATGGTTCTGATTAGT+AGG - chr1_3:8197658-8197677 Msa0101530:intron 50.0%
CGTTTGGCGGAGCAAGGAAA+GGG - chr1_3:8196684-8196703 Msa0101530:intron 55.0%
AGCATGATTCCCACCCGACT+TGG + chr1_3:8197051-8197070 None:intergenic 55.0%
GGTGGGAATCATGCTGTCTC+TGG - chr1_3:8197056-8197075 Msa0101530:intron 55.0%
AAGCTGCGTTTGGCGGAGCA+AGG - chr1_3:8196678-8196697 Msa0101530:intron 60.0%
GCGTTTGGCGGAGCAAGGAA+AGG - chr1_3:8196683-8196702 Msa0101530:intron 60.0%
GGCAACGGCGATCCGAGATG+CGG + chr1_3:8195306-8195325 None:intergenic 65.0%
GCGCTCGACAGTTTCCCCGA+TGG - chr1_3:8197644-8197663 Msa0101530:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8195168 8197973 8195168 ID=Msa0101530;Name=Msa0101530
chr1_3 mRNA 8195168 8197973 8195168 ID=Msa0101530-mRNA-1;Parent=Msa0101530;Name=Msa0101530-mRNA-1;_AED=0.01;_eAED=0.01;_QI=83|1|1|1|1|1|2|297|428
chr1_3 exon 8195168 8196577 8195168 ID=Msa0101530-mRNA-1:exon:3265;Parent=Msa0101530-mRNA-1
chr1_3 exon 8197717 8197973 8197717 ID=Msa0101530-mRNA-1:exon:3264;Parent=Msa0101530-mRNA-1
chr1_3 five_prime_UTR 8197891 8197973 8197891 ID=Msa0101530-mRNA-1:five_prime_utr;Parent=Msa0101530-mRNA-1
chr1_3 CDS 8197717 8197890 8197717 ID=Msa0101530-mRNA-1:cds;Parent=Msa0101530-mRNA-1
chr1_3 CDS 8195465 8196577 8195465 ID=Msa0101530-mRNA-1:cds;Parent=Msa0101530-mRNA-1
chr1_3 three_prime_UTR 8195168 8195464 8195168 ID=Msa0101530-mRNA-1:three_prime_utr;Parent=Msa0101530-mRNA-1
Gene Sequence

>Msa0101530

ATGGCAGGTCGCAGAGATGCGTTGCTTACCAGAGACAAAAACCATTCAATCACCGCATCTCGGATCGCCGTTGCCGTTTTCATCGGCGTTCTTCTTGGTTGCATCTTCGCTTTCTTTTCACCACACGGTTTCTTCATTTCCACCGCATCAACTCAGACCATTCTCAGTCACAAGATGGTTTCGACAGAGTGTGAATCGCCAGAACAAGTTAATGCGTTGAAATTGAATATTCAATCAGCTAAAGAGAAGAATTCTGAGCTGAAGAAGCAGGTGAAAGGTCTAATGGAGAAGCTGCGTTTGGCGGAGCAAGGAAAGGGTCATGCTACGGAACAGTTTGTTGTGCTTGGTGAGAAACACAAGGCTGGTCCTTTTGGCACTGTCAAGGCTCTCAGAACAAATCCTTCTGTTATTCCCGATGAATCGGTGAACCCTAGATTGGCAAAACTCTTGGCGGAAATTGCTATTTATAAAGAGGTCGTTGTTGTTCTGGCTAACACTAATGTGTTGGAGATGTTACAGGTATGGTTCACCAATATCAAGAAAGTTGGCATATCTAATTATTTGGTTGTTGCATTAGATGACAGAATTGAAGAGTTTTGTAAGTCAAATGATGTTCCTGTCTATAGAAGAGACCCGGATCAAGGTGTTGATTCAATTGCCAAGTCGGGTGGGAATCATGCTGTCTCTGGATTGAAATTTCGCATTTTGAGAGAGTTTCTGCAACTAGGTTACAGCGTTCTCCTCTCGGATGTCGATATTGTGTATTTGCAGAACCCCTTTGATTATATTTATAGGGATTCAGATGTGGAGTCAATGTCAGATGGTCATAGCAATCATACAGCTTATGGATTTAACGATGTCTTTGATGAACCTAAAATGGGTTGGGCTAGATATGCTCATACCATGAGAATATGGGTATATAACTCTGGCTTTTTTTACATAAGACCAACAATTCCTTCAATTGAGCTTTTAGATCGCGTTGCCGATCGGCTTTCTAAAGAGAAAGCATGGGATCAAGCAGTTTTTAATGAAGAACTCTTTTACCCTTCACATCCTGGTTATGATGGACTTCATGCTGCAAAGAGAACAATGGATATGTACCTTTTTATGAACAGTAAGGTTCTGTTTAAGACTGTGAGAAAAGATGCTAAGCTCAAAAAGTTGAAGCCCGTGATTGTACATGTTAACTATCATCCTGATAAACTTGCAAGGATGAAAGCTGTAGTTGAGTTCTATGTCAACGGGAAACAAGATGCGCTCGACAGTTTCCCCGATGGTTCTGATTAG

Protein sequence

>Msa0101530

MAGRRDALLTRDKNHSITASRIAVAVFIGVLLGCIFAFFSPHGFFISTASTQTILSHKMVSTECESPEQVNALKLNIQSAKEKNSELKKQVKGLMEKLRLAEQGKGHATEQFVVLGEKHKAGPFGTVKALRTNPSVIPDESVNPRLAKLLAEIAIYKEVVVVLANTNVLEMLQVWFTNIKKVGISNYLVVALDDRIEEFCKSNDVPVYRRDPDQGVDSIAKSGGNHAVSGLKFRILREFLQLGYSVLLSDVDIVYLQNPFDYIYRDSDVESMSDGHSNHTAYGFNDVFDEPKMGWARYAHTMRIWVYNSGFFYIRPTIPSIELLDRVADRLSKEKAWDQAVFNEELFYPSHPGYDGLHAAKRTMDMYLFMNSKVLFKTVRKDAKLKKLKPVIVHVNYHPDKLARMKAVVEFYVNGKQDALDSFPDGSD*