AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0240590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240590 MtrunA17_Chr2g0292021 92.687 547 20 1 1 527 1 547 0.0 1018
Msa0240590 MtrunA17_Chr2g0292011 94.497 527 26 1 1 527 1 524 0.0 1009
Msa0240590 MtrunA17_Chr7g0237461 91.082 527 27 1 1 527 1 507 0.0 973
Msa0240590 MtrunA17_Chr8g0347561 64.491 521 147 6 1 518 22 507 0.0 662
Msa0240590 MtrunA17_Chr7g0262211 52.794 519 207 2 1 519 24 504 0.0 588
Msa0240590 MtrunA17_Chr7g0262201 53.101 516 204 2 4 519 1 478 0.0 587
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0240590 AT2G20340.1 51.737 518 212 2 1 518 9 488 0.0 588
Msa0240590 AT4G28680.1 51.145 524 214 5 1 520 57 542 0.0 560
Msa0240590 AT4G28680.3 51.141 526 213 6 1 520 57 544 0.0 557
Msa0240590 AT4G28680.4 51.141 526 213 6 1 520 48 535 0.0 557
Msa0240590 AT4G28680.2 51.141 526 213 6 1 520 57 544 0.0 557
Msa0240590 AT4G28680.5 48.556 554 213 7 1 520 48 563 0.0 542
Msa0240590 AT2G20340.2 47.297 518 208 2 1 518 9 461 0.0 529
Msa0240590 AT4G28680.7 56.047 339 142 3 1 333 48 385 1.06e-138 408
Msa0240590 AT4G28680.6 55.763 321 136 2 1 315 48 368 1.02e-132 390

Find 70 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGGTAAACTTGTTGTTTA+TGG 0.117744 2_2:-15949508 Msa0240590:CDS
TCGCGAAAGATTATGGAATT+TGG 0.139532 2_2:-15949252 Msa0240590:CDS
TACAACCTGTGAAGGTATTT+TGG 0.146910 2_2:-15949584 Msa0240590:CDS
AAACACTTTATCAAAGAATT+TGG 0.150243 2_2:+15949076 None:intergenic
GATAAAATTCTTAGCAAAAT+TGG 0.200556 2_2:-15949541 Msa0240590:CDS
TGCAATGTCGCGAAAGATTA+TGG 0.240155 2_2:-15949259 Msa0240590:CDS
ATTTAGATTGTTGTTGTCTT+TGG 0.242997 2_2:-15949108 Msa0240590:CDS
AACGACGAATTCTGAGTATT+TGG 0.245937 2_2:-15949050 Msa0240590:CDS
GGTAGCACAGCAGGGTTCTT+AGG 0.266911 2_2:-15949766 Msa0240590:CDS
GGAAAATAAGCAAAGTAATT+AGG 0.271671 2_2:+15949796 None:intergenic
TTAGTCTTAATGCTCATAAA+TGG 0.276313 2_2:-15949141 Msa0240590:CDS
ATTGTTGATAACAATGATTC+AGG 0.282223 2_2:+15949376 None:intergenic
TTGTTGTTGTCTTTGGTTAA+AGG 0.284413 2_2:-15949101 Msa0240590:CDS
CGCGAAAGATTATGGAATTT+GGG 0.294467 2_2:-15949251 Msa0240590:CDS
TGAACGTTGTTGGATTTAAC+TGG 0.304439 2_2:-15949723 Msa0240590:CDS
TAGAAAATGTTGTTATAGAT+TGG 0.319360 2_2:-15949675 Msa0240590:CDS
CAGAGGAAATGCATGTGATT+AGG 0.320772 2_2:-15948532 Msa0240590:CDS
TTGGATTCTATCAATGGTTC+AGG 0.342114 2_2:-15948626 Msa0240590:CDS
CCTGCTGTGCTACCACTTGA+TGG 0.350739 2_2:+15949775 None:intergenic
GAAGATGTTATTGTTGCTAA+TGG 0.351139 2_2:-15948722 Msa0240590:CDS
AGAGGAAATGCATGTGATTA+GGG 0.354844 2_2:-15948531 Msa0240590:CDS
TTGAATTCTGTAGTATCTAG+TGG 0.355450 2_2:+15950018 None:intergenic
TGAAATTAATCGTAAGTTGT+TGG 0.367956 2_2:-15948645 Msa0240590:CDS
GCTATGGTGTTGATAATCTT+AGG 0.377963 2_2:-15948925 Msa0240590:CDS
TTTAAGGAACCATGTTGAAA+TGG 0.378514 2_2:-15948897 Msa0240590:CDS
CCGAAGATTTCGCGCTTTGA+AGG 0.381530 2_2:-15948966 Msa0240590:CDS
CCTTCAAAGCGCGAAATCTT+CGG 0.384803 2_2:+15948966 None:intergenic
CCATCAAGTGGTAGCACAGC+AGG 0.386882 2_2:-15949775 Msa0240590:CDS
GAGTTTAGATATTTGATTGA+TGG 0.395614 2_2:-15949184 Msa0240590:CDS
AGGATGGTTTCAATAGGTTC+AGG 0.403995 2_2:+15949868 None:intergenic
AGCACTGGATTGAACGTTGT+TGG 0.408006 2_2:-15949733 Msa0240590:CDS
TCTTCAAGGATGGTTTCAAT+AGG 0.409255 2_2:+15949862 None:intergenic
AAGTTGTTGGATTCTATCAA+TGG 0.412524 2_2:-15948632 Msa0240590:CDS
TGGTTTGTTCTTAGAAGCTA+TGG 0.413847 2_2:-15948941 Msa0240590:CDS
GATTTCGCGCTTTGAAGGTA+TGG 0.415981 2_2:-15948961 Msa0240590:CDS
CATGTTGATGCTGCTTATGC+TGG 0.418283 2_2:-15949226 Msa0240590:CDS
CTTTGCCAATGTGTTATACC+TGG 0.443144 2_2:+15949820 None:intergenic
AAGTGGTTGATTACAAAGAT+TGG 0.455962 2_2:-15949003 Msa0240590:CDS
TGCTTTCTTTGTGTAACTGT+TGG 0.466597 2_2:-15949322 Msa0240590:CDS
TTAGGAGAAATGTTAAGCAC+TGG 0.472185 2_2:-15949748 Msa0240590:CDS
TTCAACGACCGCAATTGATC+CGG 0.477720 2_2:-15949293 Msa0240590:CDS
AGTTTGGTTCTACTTGACTT+AGG 0.478980 2_2:+15949929 None:intergenic
ATGACTCATGCTGTGGTTGA+AGG 0.487228 2_2:-15948593 Msa0240590:CDS
GCTAATGGAAAGGTAACAAA+TGG 0.487672 2_2:-15948767 Msa0240590:CDS
AAATGCATGTGATTAGGGCT+TGG 0.493317 2_2:-15948526 Msa0240590:CDS
AGTTCCCAAAATACCTTCAC+AGG 0.500257 2_2:+15949579 None:intergenic
TGAATTCTGTAGTATCTAGT+GGG 0.505218 2_2:+15950019 None:intergenic
GGTTGGTGAAAATGGACAAA+AGG 0.505578 2_2:-15948859 Msa0240590:CDS
GGATTTGAAGGTGCAAAAGA+AGG 0.506622 2_2:+15949889 None:intergenic
TTTGTGATTAGGTGTGCTGT+TGG 0.510849 2_2:-15948566 Msa0240590:CDS
ACTTATCAGTCTTAATAGCC+CGG 0.511731 2_2:+15949419 None:intergenic
TCAATAGGTTCAGGATTTGA+AGG 0.516728 2_2:+15949877 None:intergenic
GGTTGATTACAAAGATTGGC+AGG 0.516909 2_2:-15948999 Msa0240590:CDS
GGTTCTACTTGACTTAGGAC+AGG 0.523508 2_2:+15949934 None:intergenic
TGCTTCTGATTCAAAACAAG+TGG 0.538782 2_2:-15949020 Msa0240590:CDS
GCTAATGGAAAGGTGACAAA+TGG 0.553773 2_2:-15948707 Msa0240590:CDS
TTATTAGGTACAACCTGTGA+AGG 0.556540 2_2:-15949592 Msa0240590:CDS
AATGTTGTTATAGATTGGCT+TGG 0.556855 2_2:-15949670 Msa0240590:CDS
TTTGCCAATGTGTTATACCT+GGG 0.567911 2_2:+15949821 None:intergenic
AAAATTGGTAGTGAAAATGT+AGG 0.570092 2_2:-15949526 Msa0240590:CDS
GCATGTGATTAGGGCTTGGA+AGG 0.593106 2_2:-15948522 Msa0240590:CDS
CATCAAGTGGTAGCACAGCA+GGG 0.607312 2_2:-15949774 Msa0240590:CDS
TCAATCAAATATCTAAACTC+AGG 0.607405 2_2:+15949187 None:intergenic
TGTTGGAGCAACTTTAACAG+AGG 0.627115 2_2:-15948549 Msa0240590:CDS
ACAGTTACACAAAGAAAGCA+AGG 0.627492 2_2:+15949325 None:intergenic
TGTTATTGTTGCTAATGGAA+AGG 0.631501 2_2:-15948717 Msa0240590:CDS
TAATCCCAGGTATAACACAT+TGG 0.657713 2_2:-15949825 Msa0240590:CDS
TGTGTACATGACTCATGCTG+TGG 0.661042 2_2:-15948600 Msa0240590:CDS
ACTACAGAATTCAAGAAACA+AGG 0.665050 2_2:-15950009 Msa0240590:CDS
ACGACCGCAATTGATCCGGT+AGG 0.680678 2_2:-15949289 Msa0240590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAAAATGATTTGAAAAA+TGG - chr2_2:15949132-15949151 Msa0240590:CDS 15.0%
!!! ATAATCTTAGGAATTTTTTA+AGG - chr2_2:15949574-15949593 Msa0240590:CDS 15.0%
!! ATACAAAATGATTTGAAAAA+TGG - chr2_2:15949132-15949151 Msa0240590:CDS 15.0%
!!! ATAATCTTAGGAATTTTTTA+AGG - chr2_2:15949574-15949593 Msa0240590:CDS 15.0%
!! TAGAAAATGTTGTTATAGAT+TGG - chr2_2:15948812-15948831 Msa0240590:CDS 20.0%
!! GATAAAATTCTTAGCAAAAT+TGG - chr2_2:15948946-15948965 Msa0240590:CDS 20.0%
!! AAATGATTTGAAAAATGGTT+TGG - chr2_2:15949137-15949156 Msa0240590:CDS 20.0%
!! AAACACTTTATCAAAGAATT+TGG + chr2_2:15949414-15949433 None:intergenic 20.0%
!! TAGAAAATGTTGTTATAGAT+TGG - chr2_2:15948812-15948831 Msa0240590:CDS 20.0%
!! GATAAAATTCTTAGCAAAAT+TGG - chr2_2:15948946-15948965 Msa0240590:CDS 20.0%
!! AAATGATTTGAAAAATGGTT+TGG - chr2_2:15949137-15949156 Msa0240590:CDS 20.0%
!! AAACACTTTATCAAAGAATT+TGG + chr2_2:15949414-15949433 None:intergenic 20.0%
!! TGTTTTCATAATAATCAGCT+AGG + chr2_2:15948522-15948541 None:intergenic 25.0%
!!! TTTTTGATAATCTTCAAGGA+TGG + chr2_2:15948638-15948657 None:intergenic 25.0%
!!! TGTGTTTTTGATAATCTTCA+AGG + chr2_2:15948642-15948661 None:intergenic 25.0%
! GGAAAATAAGCAAAGTAATT+AGG + chr2_2:15948694-15948713 None:intergenic 25.0%
!! CCTTTAAAAAGAAAACTCTT+AGG + chr2_2:15948859-15948878 None:intergenic 25.0%
!! CCTAAGAGTTTTCTTTTTAA+AGG - chr2_2:15948856-15948875 Msa0240590:CDS 25.0%
!!! AAGAGTTTTCTTTTTAAAGG+TGG - chr2_2:15948859-15948878 Msa0240590:CDS 25.0%
!!! AAAATTGGTAGTGAAAATGT+AGG - chr2_2:15948961-15948980 Msa0240590:CDS 25.0%
!!! ATTGTTGATAACAATGATTC+AGG + chr2_2:15949114-15949133 None:intergenic 25.0%
! TCAATCAAATATCTAAACTC+AGG + chr2_2:15949303-15949322 None:intergenic 25.0%
! GAGTTTAGATATTTGATTGA+TGG - chr2_2:15949303-15949322 Msa0240590:CDS 25.0%
!!! TTAGTCTTAATGCTCATAAA+TGG - chr2_2:15949346-15949365 Msa0240590:CDS 25.0%
!! ATTTAGATTGTTGTTGTCTT+TGG - chr2_2:15949379-15949398 Msa0240590:CDS 25.0%
!! AAATGGCTAAAACTTTTGAA+GGG - chr2_2:15949607-15949626 Msa0240590:CDS 25.0%
!!! AACTTTCTCTTGTTTGTTTT+AGG - chr2_2:15949673-15949692 Msa0240590:CDS 25.0%
!!! TGTTTTAGGATTTTACCATA+TGG - chr2_2:15949687-15949706 Msa0240590:CDS 25.0%
!!! TTAGCAACTTTTTTACCATA+TGG + chr2_2:15949705-15949724 None:intergenic 25.0%
! TATGGTAAAAAAGTTGCTAA+TGG - chr2_2:15949705-15949724 Msa0240590:CDS 25.0%
! TAAAAAAGTTGCTAATGGAA+AGG - chr2_2:15949710-15949729 Msa0240590:CDS 25.0%
! TGAAATTAATCGTAAGTTGT+TGG - chr2_2:15949842-15949861 Msa0240590:CDS 25.0%
!! TGTTTTCATAATAATCAGCT+AGG + chr2_2:15948522-15948541 None:intergenic 25.0%
!!! TTTTTGATAATCTTCAAGGA+TGG + chr2_2:15948638-15948657 None:intergenic 25.0%
!!! TGTGTTTTTGATAATCTTCA+AGG + chr2_2:15948642-15948661 None:intergenic 25.0%
! GGAAAATAAGCAAAGTAATT+AGG + chr2_2:15948694-15948713 None:intergenic 25.0%
!! CCTTTAAAAAGAAAACTCTT+AGG + chr2_2:15948859-15948878 None:intergenic 25.0%
!! CCTAAGAGTTTTCTTTTTAA+AGG - chr2_2:15948856-15948875 Msa0240590:CDS 25.0%
!!! AAGAGTTTTCTTTTTAAAGG+TGG - chr2_2:15948859-15948878 Msa0240590:CDS 25.0%
!!! AAAATTGGTAGTGAAAATGT+AGG - chr2_2:15948961-15948980 Msa0240590:CDS 25.0%
!!! ATTGTTGATAACAATGATTC+AGG + chr2_2:15949114-15949133 None:intergenic 25.0%
! TCAATCAAATATCTAAACTC+AGG + chr2_2:15949303-15949322 None:intergenic 25.0%
! GAGTTTAGATATTTGATTGA+TGG - chr2_2:15949303-15949322 Msa0240590:CDS 25.0%
!!! TTAGTCTTAATGCTCATAAA+TGG - chr2_2:15949346-15949365 Msa0240590:CDS 25.0%
!! ATTTAGATTGTTGTTGTCTT+TGG - chr2_2:15949379-15949398 Msa0240590:CDS 25.0%
!! AAATGGCTAAAACTTTTGAA+GGG - chr2_2:15949607-15949626 Msa0240590:CDS 25.0%
!!! AACTTTCTCTTGTTTGTTTT+AGG - chr2_2:15949673-15949692 Msa0240590:CDS 25.0%
!!! TGTTTTAGGATTTTACCATA+TGG - chr2_2:15949687-15949706 Msa0240590:CDS 25.0%
!!! TTAGCAACTTTTTTACCATA+TGG + chr2_2:15949705-15949724 None:intergenic 25.0%
! TATGGTAAAAAAGTTGCTAA+TGG - chr2_2:15949705-15949724 Msa0240590:CDS 25.0%
! TAAAAAAGTTGCTAATGGAA+AGG - chr2_2:15949710-15949729 Msa0240590:CDS 25.0%
! TGAAATTAATCGTAAGTTGT+TGG - chr2_2:15949842-15949861 Msa0240590:CDS 25.0%
TGAATTCTGTAGTATCTAGT+GGG + chr2_2:15948471-15948490 None:intergenic 30.0%
TTGAATTCTGTAGTATCTAG+TGG + chr2_2:15948472-15948491 None:intergenic 30.0%
ACTACAGAATTCAAGAAACA+AGG - chr2_2:15948478-15948497 Msa0240590:CDS 30.0%
!!! AACAGTTTTTTGAGGTAGTT+TGG + chr2_2:15948577-15948596 None:intergenic 30.0%
!!! AAGAAGGTAACAGTTTTTTG+AGG + chr2_2:15948585-15948604 None:intergenic 30.0%
TATCAAAAACACATAATCCC+AGG - chr2_2:15948649-15948668 Msa0240590:CDS 30.0%
!! TTTGCTTATTTTCCATCAAG+TGG - chr2_2:15948700-15948719 Msa0240590:CDS 30.0%
! AATGTTGTTATAGATTGGCT+TGG - chr2_2:15948817-15948836 Msa0240590:CDS 30.0%
!! AGTTTTCTTTTTAAAGGTGG+TGG - chr2_2:15948862-15948881 Msa0240590:CDS 30.0%
!! GTAGGTAAACTTGTTGTTTA+TGG - chr2_2:15948979-15948998 Msa0240590:CDS 30.0%
CAAAAAGCAGCTCATATAAT+AGG - chr2_2:15949027-15949046 Msa0240590:CDS 30.0%
! TTAATAGCCCGGAAATTTTT+CGG + chr2_2:15949060-15949079 None:intergenic 30.0%
! TTGTTGTTGTCTTTGGTTAA+AGG - chr2_2:15949386-15949405 Msa0240590:CDS 30.0%
AAGTGGTTGATTACAAAGAT+TGG - chr2_2:15949484-15949503 Msa0240590:CDS 30.0%
TTTAAGGAACCATGTTGAAA+TGG - chr2_2:15949590-15949609 Msa0240590:CDS 30.0%
!! AAGTTTTAGCCATTTCAACA+TGG + chr2_2:15949602-15949621 None:intergenic 30.0%
! GAAATGGCTAAAACTTTTGA+AGG - chr2_2:15949606-15949625 Msa0240590:CDS 30.0%
! CAAACAAGAGAAAGTTTTCT+AGG + chr2_2:15949669-15949688 None:intergenic 30.0%
GAAGATGTTATTGTTGCTAA+TGG - chr2_2:15949765-15949784 Msa0240590:CDS 30.0%
TGTTATTGTTGCTAATGGAA+AGG - chr2_2:15949770-15949789 Msa0240590:CDS 30.0%
AAGTTGTTGGATTCTATCAA+TGG - chr2_2:15949855-15949874 Msa0240590:CDS 30.0%
! TTGAAGGAGTTTTTGTGATT+AGG - chr2_2:15949910-15949929 Msa0240590:CDS 30.0%
TGAATTCTGTAGTATCTAGT+GGG + chr2_2:15948471-15948490 None:intergenic 30.0%
TTGAATTCTGTAGTATCTAG+TGG + chr2_2:15948472-15948491 None:intergenic 30.0%
ACTACAGAATTCAAGAAACA+AGG - chr2_2:15948478-15948497 Msa0240590:CDS 30.0%
!!! AACAGTTTTTTGAGGTAGTT+TGG + chr2_2:15948577-15948596 None:intergenic 30.0%
!!! AAGAAGGTAACAGTTTTTTG+AGG + chr2_2:15948585-15948604 None:intergenic 30.0%
TATCAAAAACACATAATCCC+AGG - chr2_2:15948649-15948668 Msa0240590:CDS 30.0%
!! TTTGCTTATTTTCCATCAAG+TGG - chr2_2:15948700-15948719 Msa0240590:CDS 30.0%
! AATGTTGTTATAGATTGGCT+TGG - chr2_2:15948817-15948836 Msa0240590:CDS 30.0%
!! AGTTTTCTTTTTAAAGGTGG+TGG - chr2_2:15948862-15948881 Msa0240590:CDS 30.0%
!! GTAGGTAAACTTGTTGTTTA+TGG - chr2_2:15948979-15948998 Msa0240590:CDS 30.0%
CAAAAAGCAGCTCATATAAT+AGG - chr2_2:15949027-15949046 Msa0240590:CDS 30.0%
! TTAATAGCCCGGAAATTTTT+CGG + chr2_2:15949060-15949079 None:intergenic 30.0%
! TTGTTGTTGTCTTTGGTTAA+AGG - chr2_2:15949386-15949405 Msa0240590:CDS 30.0%
AAGTGGTTGATTACAAAGAT+TGG - chr2_2:15949484-15949503 Msa0240590:CDS 30.0%
TTTAAGGAACCATGTTGAAA+TGG - chr2_2:15949590-15949609 Msa0240590:CDS 30.0%
!! AAGTTTTAGCCATTTCAACA+TGG + chr2_2:15949602-15949621 None:intergenic 30.0%
! GAAATGGCTAAAACTTTTGA+AGG - chr2_2:15949606-15949625 Msa0240590:CDS 30.0%
! CAAACAAGAGAAAGTTTTCT+AGG + chr2_2:15949669-15949688 None:intergenic 30.0%
GAAGATGTTATTGTTGCTAA+TGG - chr2_2:15949765-15949784 Msa0240590:CDS 30.0%
TGTTATTGTTGCTAATGGAA+AGG - chr2_2:15949770-15949789 Msa0240590:CDS 30.0%
AAGTTGTTGGATTCTATCAA+TGG - chr2_2:15949855-15949874 Msa0240590:CDS 30.0%
! TTGAAGGAGTTTTTGTGATT+AGG - chr2_2:15949910-15949929 Msa0240590:CDS 30.0%
!! AGTTTGGTTCTACTTGACTT+AGG + chr2_2:15948561-15948580 None:intergenic 35.0%
TCAATAGGTTCAGGATTTGA+AGG + chr2_2:15948613-15948632 None:intergenic 35.0%
TCTTCAAGGATGGTTTCAAT+AGG + chr2_2:15948628-15948647 None:intergenic 35.0%
TAATCCCAGGTATAACACAT+TGG - chr2_2:15948662-15948681 Msa0240590:CDS 35.0%
TTTGCCAATGTGTTATACCT+GGG + chr2_2:15948669-15948688 None:intergenic 35.0%
TTAGGAGAAATGTTAAGCAC+TGG - chr2_2:15948739-15948758 Msa0240590:CDS 35.0%
TGAACGTTGTTGGATTTAAC+TGG - chr2_2:15948764-15948783 Msa0240590:CDS 35.0%
!! TTTCTTTTTAAAGGTGGTGG+CGG - chr2_2:15948865-15948884 Msa0240590:CDS 35.0%
TTATTAGGTACAACCTGTGA+AGG - chr2_2:15948895-15948914 Msa0240590:CDS 35.0%
!!! TACAACCTGTGAAGGTATTT+TGG - chr2_2:15948903-15948922 Msa0240590:CDS 35.0%
!!! ACAACCTGTGAAGGTATTTT+GGG - chr2_2:15948904-15948923 Msa0240590:CDS 35.0%
GAATAGACCCGAAAAATTTC+CGG - chr2_2:15949049-15949068 Msa0240590:CDS 35.0%
AATAGACCCGAAAAATTTCC+GGG - chr2_2:15949050-15949069 Msa0240590:CDS 35.0%
! TAATAGCCCGGAAATTTTTC+GGG + chr2_2:15949059-15949078 None:intergenic 35.0%
ACTTATCAGTCTTAATAGCC+CGG + chr2_2:15949071-15949090 None:intergenic 35.0%
ACAGTTACACAAAGAAAGCA+AGG + chr2_2:15949165-15949184 None:intergenic 35.0%
TGCTTTCTTTGTGTAACTGT+TGG - chr2_2:15949165-15949184 Msa0240590:CDS 35.0%
! ACATTGCACAATTTTCCTAC+CGG + chr2_2:15949216-15949235 None:intergenic 35.0%
TCGCGAAAGATTATGGAATT+TGG - chr2_2:15949235-15949254 Msa0240590:CDS 35.0%
CGCGAAAGATTATGGAATTT+GGG - chr2_2:15949236-15949255 Msa0240590:CDS 35.0%
AACGACGAATTCTGAGTATT+TGG - chr2_2:15949437-15949456 Msa0240590:CDS 35.0%
TGCTTCTGATTCAAAACAAG+TGG - chr2_2:15949467-15949486 Msa0240590:CDS 35.0%
!! TGGTTTGTTCTTAGAAGCTA+TGG - chr2_2:15949546-15949565 Msa0240590:CDS 35.0%
!! GCTATGGTGTTGATAATCTT+AGG - chr2_2:15949562-15949581 Msa0240590:CDS 35.0%
!!! TTTTGAAGGGTTGGTGAAAA+TGG - chr2_2:15949620-15949639 Msa0240590:CDS 35.0%
GCTAATGGAAAGGTAACAAA+TGG - chr2_2:15949720-15949739 Msa0240590:CDS 35.0%
TTGGATTCTATCAATGGTTC+AGG - chr2_2:15949861-15949880 Msa0240590:CDS 35.0%
AGAGGAAATGCATGTGATTA+GGG - chr2_2:15949956-15949975 Msa0240590:CDS 35.0%
!! AGTTTGGTTCTACTTGACTT+AGG + chr2_2:15948561-15948580 None:intergenic 35.0%
TCAATAGGTTCAGGATTTGA+AGG + chr2_2:15948613-15948632 None:intergenic 35.0%
TCTTCAAGGATGGTTTCAAT+AGG + chr2_2:15948628-15948647 None:intergenic 35.0%
TAATCCCAGGTATAACACAT+TGG - chr2_2:15948662-15948681 Msa0240590:CDS 35.0%
TTTGCCAATGTGTTATACCT+GGG + chr2_2:15948669-15948688 None:intergenic 35.0%
TTAGGAGAAATGTTAAGCAC+TGG - chr2_2:15948739-15948758 Msa0240590:CDS 35.0%
TGAACGTTGTTGGATTTAAC+TGG - chr2_2:15948764-15948783 Msa0240590:CDS 35.0%
!! TTTCTTTTTAAAGGTGGTGG+CGG - chr2_2:15948865-15948884 Msa0240590:CDS 35.0%
TTATTAGGTACAACCTGTGA+AGG - chr2_2:15948895-15948914 Msa0240590:CDS 35.0%
!!! TACAACCTGTGAAGGTATTT+TGG - chr2_2:15948903-15948922 Msa0240590:CDS 35.0%
!!! ACAACCTGTGAAGGTATTTT+GGG - chr2_2:15948904-15948923 Msa0240590:CDS 35.0%
GAATAGACCCGAAAAATTTC+CGG - chr2_2:15949049-15949068 Msa0240590:CDS 35.0%
AATAGACCCGAAAAATTTCC+GGG - chr2_2:15949050-15949069 Msa0240590:CDS 35.0%
! TAATAGCCCGGAAATTTTTC+GGG + chr2_2:15949059-15949078 None:intergenic 35.0%
ACTTATCAGTCTTAATAGCC+CGG + chr2_2:15949071-15949090 None:intergenic 35.0%
ACAGTTACACAAAGAAAGCA+AGG + chr2_2:15949165-15949184 None:intergenic 35.0%
TGCTTTCTTTGTGTAACTGT+TGG - chr2_2:15949165-15949184 Msa0240590:CDS 35.0%
! ACATTGCACAATTTTCCTAC+CGG + chr2_2:15949216-15949235 None:intergenic 35.0%
TCGCGAAAGATTATGGAATT+TGG - chr2_2:15949235-15949254 Msa0240590:CDS 35.0%
CGCGAAAGATTATGGAATTT+GGG - chr2_2:15949236-15949255 Msa0240590:CDS 35.0%
AACGACGAATTCTGAGTATT+TGG - chr2_2:15949437-15949456 Msa0240590:CDS 35.0%
TGCTTCTGATTCAAAACAAG+TGG - chr2_2:15949467-15949486 Msa0240590:CDS 35.0%
!! TGGTTTGTTCTTAGAAGCTA+TGG - chr2_2:15949546-15949565 Msa0240590:CDS 35.0%
!! GCTATGGTGTTGATAATCTT+AGG - chr2_2:15949562-15949581 Msa0240590:CDS 35.0%
!!! TTTTGAAGGGTTGGTGAAAA+TGG - chr2_2:15949620-15949639 Msa0240590:CDS 35.0%
GCTAATGGAAAGGTAACAAA+TGG - chr2_2:15949720-15949739 Msa0240590:CDS 35.0%
TTGGATTCTATCAATGGTTC+AGG - chr2_2:15949861-15949880 Msa0240590:CDS 35.0%
AGAGGAAATGCATGTGATTA+GGG - chr2_2:15949956-15949975 Msa0240590:CDS 35.0%
! GGATTTGAAGGTGCAAAAGA+AGG + chr2_2:15948601-15948620 None:intergenic 40.0%
AGGATGGTTTCAATAGGTTC+AGG + chr2_2:15948622-15948641 None:intergenic 40.0%
CTTTGCCAATGTGTTATACC+TGG + chr2_2:15948670-15948689 None:intergenic 40.0%
!!! TTTTCTAGTTCTGTAGCAGC+TGG + chr2_2:15948799-15948818 None:intergenic 40.0%
AGTTCCCAAAATACCTTCAC+AGG + chr2_2:15948911-15948930 None:intergenic 40.0%
! TTTTCCTACCGGATCAATTG+CGG + chr2_2:15949205-15949224 None:intergenic 40.0%
TGCAATGTCGCGAAAGATTA+TGG - chr2_2:15949228-15949247 Msa0240590:CDS 40.0%
GGTTGATTACAAAGATTGGC+AGG - chr2_2:15949488-15949507 Msa0240590:CDS 40.0%
!! GGCTAAAACTTTTGAAGGGT+TGG - chr2_2:15949611-15949630 Msa0240590:CDS 40.0%
!! GGTTGGTGAAAATGGACAAA+AGG - chr2_2:15949628-15949647 Msa0240590:CDS 40.0%
GCTAATGGAAAGGTGACAAA+TGG - chr2_2:15949780-15949799 Msa0240590:CDS 40.0%
TTTGTGATTAGGTGTGCTGT+TGG - chr2_2:15949921-15949940 Msa0240590:CDS 40.0%
TGTTGGAGCAACTTTAACAG+AGG - chr2_2:15949938-15949957 Msa0240590:CDS 40.0%
CAGAGGAAATGCATGTGATT+AGG - chr2_2:15949955-15949974 Msa0240590:CDS 40.0%
AAATGCATGTGATTAGGGCT+TGG - chr2_2:15949961-15949980 Msa0240590:CDS 40.0%
! GGATTTGAAGGTGCAAAAGA+AGG + chr2_2:15948601-15948620 None:intergenic 40.0%
AGGATGGTTTCAATAGGTTC+AGG + chr2_2:15948622-15948641 None:intergenic 40.0%
CTTTGCCAATGTGTTATACC+TGG + chr2_2:15948670-15948689 None:intergenic 40.0%
!!! TTTTCTAGTTCTGTAGCAGC+TGG + chr2_2:15948799-15948818 None:intergenic 40.0%
AGTTCCCAAAATACCTTCAC+AGG + chr2_2:15948911-15948930 None:intergenic 40.0%
! TTTTCCTACCGGATCAATTG+CGG + chr2_2:15949205-15949224 None:intergenic 40.0%
TGCAATGTCGCGAAAGATTA+TGG - chr2_2:15949228-15949247 Msa0240590:CDS 40.0%
GGTTGATTACAAAGATTGGC+AGG - chr2_2:15949488-15949507 Msa0240590:CDS 40.0%
!! GGCTAAAACTTTTGAAGGGT+TGG - chr2_2:15949611-15949630 Msa0240590:CDS 40.0%
!! GGTTGGTGAAAATGGACAAA+AGG - chr2_2:15949628-15949647 Msa0240590:CDS 40.0%
GCTAATGGAAAGGTGACAAA+TGG - chr2_2:15949780-15949799 Msa0240590:CDS 40.0%
TTTGTGATTAGGTGTGCTGT+TGG - chr2_2:15949921-15949940 Msa0240590:CDS 40.0%
TGTTGGAGCAACTTTAACAG+AGG - chr2_2:15949938-15949957 Msa0240590:CDS 40.0%
CAGAGGAAATGCATGTGATT+AGG - chr2_2:15949955-15949974 Msa0240590:CDS 40.0%
AAATGCATGTGATTAGGGCT+TGG - chr2_2:15949961-15949980 Msa0240590:CDS 40.0%
GGTTCTACTTGACTTAGGAC+AGG + chr2_2:15948556-15948575 None:intergenic 45.0%
! AGCACTGGATTGAACGTTGT+TGG - chr2_2:15948754-15948773 Msa0240590:CDS 45.0%
TTCAACGACCGCAATTGATC+CGG - chr2_2:15949194-15949213 Msa0240590:CDS 45.0%
! CATGTTGATGCTGCTTATGC+TGG - chr2_2:15949261-15949280 Msa0240590:CDS 45.0%
CCTTCAAAGCGCGAAATCTT+CGG + chr2_2:15949524-15949543 None:intergenic 45.0%
!! GATTTCGCGCTTTGAAGGTA+TGG - chr2_2:15949526-15949545 Msa0240590:CDS 45.0%
TGTGTACATGACTCATGCTG+TGG - chr2_2:15949887-15949906 Msa0240590:CDS 45.0%
ATGACTCATGCTGTGGTTGA+AGG - chr2_2:15949894-15949913 Msa0240590:CDS 45.0%
GGTTCTACTTGACTTAGGAC+AGG + chr2_2:15948556-15948575 None:intergenic 45.0%
! AGCACTGGATTGAACGTTGT+TGG - chr2_2:15948754-15948773 Msa0240590:CDS 45.0%
TTCAACGACCGCAATTGATC+CGG - chr2_2:15949194-15949213 Msa0240590:CDS 45.0%
! CATGTTGATGCTGCTTATGC+TGG - chr2_2:15949261-15949280 Msa0240590:CDS 45.0%
CCTTCAAAGCGCGAAATCTT+CGG + chr2_2:15949524-15949543 None:intergenic 45.0%
!! GATTTCGCGCTTTGAAGGTA+TGG - chr2_2:15949526-15949545 Msa0240590:CDS 45.0%
TGTGTACATGACTCATGCTG+TGG - chr2_2:15949887-15949906 Msa0240590:CDS 45.0%
ATGACTCATGCTGTGGTTGA+AGG - chr2_2:15949894-15949913 Msa0240590:CDS 45.0%
CATCAAGTGGTAGCACAGCA+GGG - chr2_2:15948713-15948732 Msa0240590:CDS 50.0%
!!! CTTTTTAAAGGTGGTGGCGG+CGG - chr2_2:15948868-15948887 Msa0240590:CDS 50.0%
CCGAAGATTTCGCGCTTTGA+AGG - chr2_2:15949521-15949540 Msa0240590:CDS 50.0%
GCATGTGATTAGGGCTTGGA+AGG - chr2_2:15949965-15949984 Msa0240590:CDS 50.0%
CATCAAGTGGTAGCACAGCA+GGG - chr2_2:15948713-15948732 Msa0240590:CDS 50.0%
!!! CTTTTTAAAGGTGGTGGCGG+CGG - chr2_2:15948868-15948887 Msa0240590:CDS 50.0%
CCGAAGATTTCGCGCTTTGA+AGG - chr2_2:15949521-15949540 Msa0240590:CDS 50.0%
GCATGTGATTAGGGCTTGGA+AGG - chr2_2:15949965-15949984 Msa0240590:CDS 50.0%
CCTGCTGTGCTACCACTTGA+TGG + chr2_2:15948715-15948734 None:intergenic 55.0%
CCATCAAGTGGTAGCACAGC+AGG - chr2_2:15948712-15948731 Msa0240590:CDS 55.0%
GGTAGCACAGCAGGGTTCTT+AGG - chr2_2:15948721-15948740 Msa0240590:CDS 55.0%
!! GGTGGCGGCGGTGTTTTATT+AGG - chr2_2:15948880-15948899 Msa0240590:CDS 55.0%
ACGACCGCAATTGATCCGGT+AGG - chr2_2:15949198-15949217 Msa0240590:CDS 55.0%
CCTGCTGTGCTACCACTTGA+TGG + chr2_2:15948715-15948734 None:intergenic 55.0%
CCATCAAGTGGTAGCACAGC+AGG - chr2_2:15948712-15948731 Msa0240590:CDS 55.0%
GGTAGCACAGCAGGGTTCTT+AGG - chr2_2:15948721-15948740 Msa0240590:CDS 55.0%
!! GGTGGCGGCGGTGTTTTATT+AGG - chr2_2:15948880-15948899 Msa0240590:CDS 55.0%
ACGACCGCAATTGATCCGGT+AGG - chr2_2:15949198-15949217 Msa0240590:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 15948463 15950046 15948463 ID=Msa0240590;Name=Msa0240590
chr2_2 mRNA 15948463 15950046 15948463 ID=Msa0240590-mRNA-1;Parent=Msa0240590;Name=Msa0240590-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|-1|0|1|-1|1|1|0|527
chr2_2 exon 15948463 15950046 15948463 ID=Msa0240590-mRNA-1:exon:6513;Parent=Msa0240590-mRNA-1
chr2_2 CDS 15948463 15950046 15948463 ID=Msa0240590-mRNA-1:cds;Parent=Msa0240590-mRNA-1
Gene Sequence

>Msa0240590

ATGAACCCACTAGATACTACAGAATTCAAGAAACAAGGTCACATGATCATTGATTTCCTAGCTGATTATTATGAAAACATTTCAAACTATCCTGTCCTAAGTCAAGTAGAACCAAACTACCTCAAAAAACTGTTACCTTCTTTTGCACCTTCAAATCCTGAACCTATTGAAACCATCCTTGAAGATTATCAAAAACACATAATCCCAGGTATAACACATTGGCAAAGTCCTAATTACTTTGCTTATTTTCCATCAAGTGGTAGCACAGCAGGGTTCTTAGGAGAAATGTTAAGCACTGGATTGAACGTTGTTGGATTTAACTGGATTTCATCACCAGCTGCTACAGAACTAGAAAATGTTGTTATAGATTGGCTTGGTGAAATTTTGAATCTTCCTAAGAGTTTTCTTTTTAAAGGTGGTGGCGGCGGTGTTTTATTAGGTACAACCTGTGAAGGTATTTTGGGAACTCTAGTTGTTGCTAGAGATAAAATTCTTAGCAAAATTGGTAGTGAAAATGTAGGTAAACTTGTTGTTTATGGTTCTGATCAAACACATTGTGCAGTTCAAAAAGCAGCTCATATAATAGGAATAGACCCGAAAAATTTCCGGGCTATTAAGACTGATAAGTTAAATTCATTCACTTTGTTGCCTGAATCATTGTTATCAACAATACAAAATGATTTGAAAAATGGTTTGGTTCCTTGCTTTCTTTGTGTAACTGTTGGCACAACTTCAACGACCGCAATTGATCCGGTAGGAAAATTGTGCAATGTCGCGAAAGATTATGGAATTTGGGTTCATGTTGATGCTGCTTATGCTGGTAGTGCTTGTATTTGTCCTGAGTTTAGATATTTGATTGATGGTGTTGAAGATGCTGATTCTTTTAGTCTTAATGCTCATAAATGGTTTTTGACTAATTTAGATTGTTGTTGTCTTTGGTTAAAGGATCCAAATTCTTTGATAAAGTGTTTGTCAACGACGAATTCTGAGTATTTGGAGAATAGTGCTTCTGATTCAAAACAAGTGGTTGATTACAAAGATTGGCAGGTAACTTTAAGCCGAAGATTTCGCGCTTTGAAGGTATGGTTTGTTCTTAGAAGCTATGGTGTTGATAATCTTAGGAATTTTTTAAGGAACCATGTTGAAATGGCTAAAACTTTTGAAGGGTTGGTGAAAATGGACAAAAGGTTTGAAATTGTTGTACCTAGAAAACTTTCTCTTGTTTGTTTTAGGATTTTACCATATGGTAAAAAAGTTGCTAATGGAAAGGTAACAAATGGTGATGTTAAACTAATTAGTAATGAAGATGTTATTGTTGCTAATGGAAAGGTGACAAATGGAGAAGCTAAATTAATTAGTAGTGAAGATGTTATTGCTAATGAAATTAATCGTAAGTTGTTGGATTCTATCAATGGTTCAGGTGATGTGTACATGACTCATGCTGTGGTTGAAGGAGTTTTTGTGATTAGGTGTGCTGTTGGAGCAACTTTAACAGAGGAAATGCATGTGATTAGGGCTTGGAAGGTTGTACAAGAACATGCAGATGCTATTCTAAAAGATAAAAAGAGTTGCATATTTGTCTAG

Protein sequence

>Msa0240590

MNPLDTTEFKKQGHMIIDFLADYYENISNYPVLSQVEPNYLKKLLPSFAPSNPEPIETILEDYQKHIIPGITHWQSPNYFAYFPSSGSTAGFLGEMLSTGLNVVGFNWISSPAATELENVVIDWLGEILNLPKSFLFKGGGGGVLLGTTCEGILGTLVVARDKILSKIGSENVGKLVVYGSDQTHCAVQKAAHIIGIDPKNFRAIKTDKLNSFTLLPESLLSTIQNDLKNGLVPCFLCVTVGTTSTTAIDPVGKLCNVAKDYGIWVHVDAAYAGSACICPEFRYLIDGVEDADSFSLNAHKWFLTNLDCCCLWLKDPNSLIKCLSTTNSEYLENSASDSKQVVDYKDWQVTLSRRFRALKVWFVLRSYGVDNLRNFLRNHVEMAKTFEGLVKMDKRFEIVVPRKLSLVCFRILPYGKKVANGKVTNGDVKLISNEDVIVANGKVTNGEAKLISSEDVIANEINRKLLDSINGSGDVYMTHAVVEGVFVIRCAVGATLTEEMHVIRAWKVVQEHADAILKDKKSCIFV*