Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1147070 | AES78933.2 | 98.438 | 192 | 3 | 0 | 2 | 193 | 5 | 196 | 3.53e-133 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1147070 | G7KWY3 | 98.438 | 192 | 3 | 0 | 2 | 193 | 5 | 196 | 1.69e-133 | 381 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016440 | Msa1147070 | 0.817574 | 3.073371e-52 | -8.615850e-47 |
| Msa0054760 | Msa1147070 | -0.815620 | 8.419816e-52 | -8.615850e-47 |
| Msa0384150 | Msa1147070 | -0.800000 | 1.769249e-48 | -8.615850e-47 |
| Msa0434820 | Msa1147070 | -0.803091 | 4.112992e-49 | -8.615850e-47 |
| Msa0481050 | Msa1147070 | -0.816105 | 6.563618e-52 | -8.615850e-47 |
| Msa1126910 | Msa1147070 | -0.804701 | 1.904222e-49 | -8.615850e-47 |
| Msa0500490 | Msa1147070 | -0.803608 | 3.214855e-49 | -8.615850e-47 |
| Msa0522810 | Msa1147070 | -0.809268 | 2.057897e-50 | -8.615850e-47 |
| Msa0569930 | Msa1147070 | -0.805016 | 1.636350e-49 | -8.615850e-47 |
| Msa0902340 | Msa1147070 | 0.800362 | 1.493337e-48 | -8.615850e-47 |
| Msa0910830 | Msa1147070 | 0.804406 | 2.193284e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1147070 | MtrunA17_Chr7g0233921 | 98.438 | 192 | 3 | 0 | 2 | 193 | 84 | 275 | 3.28e-137 | 384 |
| Msa1147070 | MtrunA17_Chr3g0112711 | 48.538 | 171 | 81 | 3 | 24 | 192 | 4 | 169 | 4.64e-38 | 129 |
| Msa1147070 | MtrunA17_Chr4g0032241 | 42.778 | 180 | 89 | 2 | 26 | 193 | 10 | 187 | 1.10e-33 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1147070 | AT3G07510.3 | 76.142 | 197 | 42 | 1 | 2 | 193 | 3 | 199 | 1.91e-88 | 258 |
| Msa1147070 | AT3G07510.2 | 85.366 | 164 | 24 | 0 | 30 | 193 | 26 | 189 | 6.04e-88 | 256 |
| Msa1147070 | AT3G07510.1 | 85.366 | 164 | 24 | 0 | 30 | 193 | 26 | 189 | 6.04e-88 | 256 |
| Msa1147070 | AT2G01580.1 | 61.006 | 159 | 62 | 0 | 33 | 191 | 31 | 189 | 1.60e-58 | 182 |
| Msa1147070 | AT5G05950.1 | 47.399 | 173 | 84 | 4 | 27 | 192 | 2 | 174 | 2.13e-42 | 140 |
| Msa1147070 | AT3G46890.1 | 40.212 | 189 | 89 | 7 | 27 | 193 | 18 | 204 | 2.29e-24 | 95.1 |
Find 61 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGCTGGTTTAATTGCTTT+TGG | 0.189482 | 7_4:+25552903 | None:intergenic |
| ATCTGCTTTGGGATCTGTTA+TGG | 0.224028 | 7_4:-25552224 | Msa1147070:CDS |
| TCTGCTTTGGGATCTGTTAT+GGG | 0.234831 | 7_4:-25552223 | Msa1147070:CDS |
| GGGGATGTTGGGATCTGCTT+TGG | 0.256332 | 7_4:-25552236 | Msa1147070:CDS |
| GGGATGTTGGGATCTGCTTT+GGG | 0.300771 | 7_4:-25552235 | Msa1147070:CDS |
| TGCTCATGCTGTTGCTGTTA+TGG | 0.304958 | 7_4:-25552122 | Msa1147070:CDS |
| GTTATGTCGTTTCGTTGGTT+TGG | 0.312592 | 7_4:+25552589 | None:intergenic |
| TTCTCCAGGCTGCGTTGGCC+TGG | 0.319684 | 7_4:+25552445 | None:intergenic |
| TTATGTCGTTTCGTTGGTTT+GGG | 0.367808 | 7_4:+25552590 | None:intergenic |
| GGGTTTGAAGATGAAGGTTT+AGG | 0.377684 | 7_4:+25552779 | None:intergenic |
| CTTACTCATCCATTGGTTGA+TGG | 0.379833 | 7_4:+25552729 | None:intergenic |
| TAAGAAGAAATAATTTGCTT+GGG | 0.383254 | 7_4:+25552807 | None:intergenic |
| GATTGGGGATGTTGTCTTGT+GGG | 0.392136 | 7_4:-25552156 | Msa1147070:CDS |
| TGGTTTGGGTAGTAATCCTT+TGG | 0.409544 | 7_4:+25552604 | None:intergenic |
| AATGTTATTGAGATTAGATT+GGG | 0.409666 | 7_4:-25552172 | Msa1147070:CDS |
| GTGATTGCTTGCTTTGTAGC+TGG | 0.420660 | 7_4:+25552888 | None:intergenic |
| CGAATACGGCGATTGTGAAA+AGG | 0.429453 | 7_4:+25552488 | None:intergenic |
| TAGAGATAGGCCGACGAATA+CGG | 0.437603 | 7_4:+25552474 | None:intergenic |
| GAATACGGCGATTGTGAAAA+GGG | 0.443002 | 7_4:+25552489 | None:intergenic |
| AACTCCAGGCCAACGCAGCC+TGG | 0.450154 | 7_4:-25552449 | Msa1147070:CDS |
| TTAAGAAGAAATAATTTGCT+TGG | 0.454014 | 7_4:+25552806 | None:intergenic |
| GAATGTTATTGAGATTAGAT+TGG | 0.457325 | 7_4:-25552173 | Msa1147070:CDS |
| TTCTTGTTATGTCGTTTCGT+TGG | 0.471656 | 7_4:+25552584 | None:intergenic |
| CTTCTTTGCGACGTCGATGC+CGG | 0.473260 | 7_4:+25552405 | None:intergenic |
| TCATCTTCCCTTGTCGCTCA+AGG | 0.494572 | 7_4:-25552343 | Msa1147070:CDS |
| TCTTGTTACTTCTGCTCTTG+TGG | 0.508114 | 7_4:-25552095 | Msa1147070:CDS |
| AATGTGTGAGAGAGGGTGAA+GGG | 0.509732 | 7_4:+25552756 | None:intergenic |
| TTGAAGATGAAGGTTTAGGA+GGG | 0.511243 | 7_4:+25552783 | None:intergenic |
| TCGTGCACATATTAATCTGA+AGG | 0.516683 | 7_4:-25552269 | Msa1147070:CDS |
| AGATTGGGGATGTTGTCTTG+TGG | 0.517457 | 7_4:-25552157 | Msa1147070:CDS |
| ATAGATACTTACTCATCCAT+TGG | 0.521053 | 7_4:+25552722 | None:intergenic |
| TTCACAATCGCCGTATTCGT+CGG | 0.523383 | 7_4:-25552484 | Msa1147070:CDS |
| CGCAAGAGGAGCGATTCTCC+AGG | 0.526259 | 7_4:+25552431 | None:intergenic |
| GAATGTGTGAGAGAGGGTGA+AGG | 0.528281 | 7_4:+25552755 | None:intergenic |
| GGCCTGGAGTTGTTAGAGAT+AGG | 0.531373 | 7_4:+25552461 | None:intergenic |
| AATCGCTCCTCTTGCGACGC+CGG | 0.533788 | 7_4:-25552424 | Msa1147070:CDS |
| TGTGTGAGAGAGGGTGAAGG+GGG | 0.538481 | 7_4:+25552758 | None:intergenic |
| CTGCTTTGGGATCTGTTATG+GGG | 0.538722 | 7_4:-25552222 | Msa1147070:CDS |
| TCTTCTCAACAGTAAGGATG+TGG | 0.538914 | 7_4:-25552302 | Msa1147070:CDS |
| GGCCTATCTCTAACAACTCC+AGG | 0.544683 | 7_4:-25552463 | Msa1147070:CDS |
| AGCGATTCTCCAGGCTGCGT+TGG | 0.549775 | 7_4:+25552440 | None:intergenic |
| AAGAAGAAATAATTTGCTTG+GGG | 0.554840 | 7_4:+25552808 | None:intergenic |
| ACTGAATCTTCTCAACAGTA+AGG | 0.558538 | 7_4:-25552308 | Msa1147070:CDS |
| GTCGATGCCGGCGTCGCAAG+AGG | 0.558642 | 7_4:+25552417 | None:intergenic |
| TTTGAAGATGAAGGTTTAGG+AGG | 0.572391 | 7_4:+25552782 | None:intergenic |
| TTTAAGACCTTGAGCGACAA+GGG | 0.573456 | 7_4:+25552336 | None:intergenic |
| AAAGTTTGAAAAGATACGTA+AGG | 0.575389 | 7_4:+25552936 | None:intergenic |
| GTTACATACATGTCAGACAT+TGG | 0.578065 | 7_4:+25551892 | None:intergenic |
| ATGTGTGAGAGAGGGTGAAG+GGG | 0.583146 | 7_4:+25552757 | None:intergenic |
| GTTTAAGACCTTGAGCGACA+AGG | 0.589823 | 7_4:+25552335 | None:intergenic |
| GTCCACGTCACCGCATTAGA+CGG | 0.592859 | 7_4:-25552529 | Msa1147070:CDS |
| ATGGAATGAATGTGTGAGAG+AGG | 0.605703 | 7_4:+25552748 | None:intergenic |
| GTGTGAGAGAGGGTGAAGGG+GGG | 0.612350 | 7_4:+25552759 | None:intergenic |
| ACATTCATTCCATCAACCAA+TGG | 0.616240 | 7_4:-25552738 | Msa1147070:exon |
| GTCCGTCTAATGCGGTGACG+TGG | 0.618663 | 7_4:+25552527 | None:intergenic |
| GTTACATTACAGATCTCCAA+AGG | 0.626791 | 7_4:-25552620 | Msa1147070:intron |
| GTTGACTAGTCCGTCTAATG+CGG | 0.635569 | 7_4:+25552519 | None:intergenic |
| GTGGACGCTTGTTGTTGAAG+AGG | 0.642678 | 7_4:+25552546 | None:intergenic |
| AGAAGAAATAATTTGCTTGG+GGG | 0.651655 | 7_4:+25552809 | None:intergenic |
| TGGAATGAATGTGTGAGAGA+GGG | 0.671203 | 7_4:+25552749 | None:intergenic |
| ATGTTATTGAGATTAGATTG+GGG | 0.685442 | 7_4:-25552171 | Msa1147070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATTAAATGTAAAGT+TGG | + | chr7_4:25552157-25552176 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTGATATATTAAA+TGG | - | chr7_4:25552840-25552859 | Msa1147070:five_prime_UTR | 10.0% |
| !! | AATTAAATTAAATGTAAAGT+TGG | + | chr7_4:25552157-25552176 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTGATATATTAAA+TGG | - | chr7_4:25552840-25552859 | Msa1147070:five_prime_UTR | 10.0% |
| !!! | TAAGAAGAAATAATTTGCTT+GGG | + | chr7_4:25552039-25552058 | None:intergenic | 20.0% |
| !!! | TTAAGAAGAAATAATTTGCT+TGG | + | chr7_4:25552040-25552059 | None:intergenic | 20.0% |
| !! | AATGTTATTGAGATTAGATT+GGG | - | chr7_4:25552671-25552690 | Msa1147070:intron | 20.0% |
| !!! | TATTAAATGGTTTTGTGATT+TGG | - | chr7_4:25552853-25552872 | Msa1147070:five_prime_UTR | 20.0% |
| !!! | TAAGAAGAAATAATTTGCTT+GGG | + | chr7_4:25552039-25552058 | None:intergenic | 20.0% |
| !!! | TTAAGAAGAAATAATTTGCT+TGG | + | chr7_4:25552040-25552059 | None:intergenic | 20.0% |
| !! | AATGTTATTGAGATTAGATT+GGG | - | chr7_4:25552671-25552690 | Msa1147070:intron | 20.0% |
| !!! | TATTAAATGGTTTTGTGATT+TGG | - | chr7_4:25552853-25552872 | Msa1147070:five_prime_UTR | 20.0% |
| ! | AAAGTTTGAAAAGATACGTA+AGG | + | chr7_4:25551910-25551929 | None:intergenic | 25.0% |
| !!! | AAGAAGAAATAATTTGCTTG+GGG | + | chr7_4:25552038-25552057 | None:intergenic | 25.0% |
| !!! | TTAATCTGAAGGTTTTAAGA+TGG | - | chr7_4:25552585-25552604 | Msa1147070:CDS | 25.0% |
| !!! | TAATCTGAAGGTTTTAAGAT+GGG | - | chr7_4:25552586-25552605 | Msa1147070:CDS | 25.0% |
| ! | GAATGTTATTGAGATTAGAT+TGG | - | chr7_4:25552670-25552689 | Msa1147070:intron | 25.0% |
| ! | ATGTTATTGAGATTAGATTG+GGG | - | chr7_4:25552672-25552691 | Msa1147070:intron | 25.0% |
| !! | ATGCTTTTACTCATTAGATT+TGG | - | chr7_4:25552792-25552811 | Msa1147070:five_prime_UTR | 25.0% |
| ! | AAAGTTTGAAAAGATACGTA+AGG | + | chr7_4:25551910-25551929 | None:intergenic | 25.0% |
| !!! | AAGAAGAAATAATTTGCTTG+GGG | + | chr7_4:25552038-25552057 | None:intergenic | 25.0% |
| !!! | TTAATCTGAAGGTTTTAAGA+TGG | - | chr7_4:25552585-25552604 | Msa1147070:CDS | 25.0% |
| !!! | TAATCTGAAGGTTTTAAGAT+GGG | - | chr7_4:25552586-25552605 | Msa1147070:CDS | 25.0% |
| ! | GAATGTTATTGAGATTAGAT+TGG | - | chr7_4:25552670-25552689 | Msa1147070:intron | 25.0% |
| ! | ATGTTATTGAGATTAGATTG+GGG | - | chr7_4:25552672-25552691 | Msa1147070:intron | 25.0% |
| !! | ATGCTTTTACTCATTAGATT+TGG | - | chr7_4:25552792-25552811 | Msa1147070:five_prime_UTR | 25.0% |
| !! | TAGCTGGTTTAATTGCTTTT+GGG | + | chr7_4:25551942-25551961 | None:intergenic | 30.0% |
| !! | AGAAGAAATAATTTGCTTGG+GGG | + | chr7_4:25552037-25552056 | None:intergenic | 30.0% |
| ATAGATACTTACTCATCCAT+TGG | + | chr7_4:25552124-25552143 | None:intergenic | 30.0% | |
| !!! | AATCTGAAGGTTTTAAGATG+GGG | - | chr7_4:25552587-25552606 | Msa1147070:CDS | 30.0% |
| !!! | TTTGTTTTTGATGCTTTCGA+TGG | - | chr7_4:25552646-25552665 | Msa1147070:intron | 30.0% |
| !! | TAGCTGGTTTAATTGCTTTT+GGG | + | chr7_4:25551942-25551961 | None:intergenic | 30.0% |
| !! | AGAAGAAATAATTTGCTTGG+GGG | + | chr7_4:25552037-25552056 | None:intergenic | 30.0% |
| ATAGATACTTACTCATCCAT+TGG | + | chr7_4:25552124-25552143 | None:intergenic | 30.0% | |
| !!! | AATCTGAAGGTTTTAAGATG+GGG | - | chr7_4:25552587-25552606 | Msa1147070:CDS | 30.0% |
| !!! | TTTGTTTTTGATGCTTTCGA+TGG | - | chr7_4:25552646-25552665 | Msa1147070:intron | 30.0% |
| !! | GTAGCTGGTTTAATTGCTTT+TGG | + | chr7_4:25551943-25551962 | None:intergenic | 35.0% |
| TTGAAGATGAAGGTTTAGGA+GGG | + | chr7_4:25552063-25552082 | None:intergenic | 35.0% | |
| TTTGAAGATGAAGGTTTAGG+AGG | + | chr7_4:25552064-25552083 | None:intergenic | 35.0% | |
| ACATTCATTCCATCAACCAA+TGG | - | chr7_4:25552105-25552124 | Msa1147070:CDS | 35.0% | |
| GTTACATTACAGATCTCCAA+AGG | - | chr7_4:25552223-25552242 | Msa1147070:CDS | 35.0% | |
| !! | TTATGTCGTTTCGTTGGTTT+GGG | + | chr7_4:25552256-25552275 | None:intergenic | 35.0% |
| ! | TTCTTGTTATGTCGTTTCGT+TGG | + | chr7_4:25552262-25552281 | None:intergenic | 35.0% |
| AGATGAGAGAAAAAAGCTGA+AGG | + | chr7_4:25552486-25552505 | None:intergenic | 35.0% | |
| ACTGAATCTTCTCAACAGTA+AGG | - | chr7_4:25552535-25552554 | Msa1147070:CDS | 35.0% | |
| TCGTGCACATATTAATCTGA+AGG | - | chr7_4:25552574-25552593 | Msa1147070:CDS | 35.0% | |
| !!! | ATCTGAAGGTTTTAAGATGG+GGG | - | chr7_4:25552588-25552607 | Msa1147070:CDS | 35.0% |
| !! | GTAGCTGGTTTAATTGCTTT+TGG | + | chr7_4:25551943-25551962 | None:intergenic | 35.0% |
| TTGAAGATGAAGGTTTAGGA+GGG | + | chr7_4:25552063-25552082 | None:intergenic | 35.0% | |
| TTTGAAGATGAAGGTTTAGG+AGG | + | chr7_4:25552064-25552083 | None:intergenic | 35.0% | |
| ACATTCATTCCATCAACCAA+TGG | - | chr7_4:25552105-25552124 | Msa1147070:CDS | 35.0% | |
| GTTACATTACAGATCTCCAA+AGG | - | chr7_4:25552223-25552242 | Msa1147070:CDS | 35.0% | |
| !! | TTATGTCGTTTCGTTGGTTT+GGG | + | chr7_4:25552256-25552275 | None:intergenic | 35.0% |
| ! | TTCTTGTTATGTCGTTTCGT+TGG | + | chr7_4:25552262-25552281 | None:intergenic | 35.0% |
| AGATGAGAGAAAAAAGCTGA+AGG | + | chr7_4:25552486-25552505 | None:intergenic | 35.0% | |
| ACTGAATCTTCTCAACAGTA+AGG | - | chr7_4:25552535-25552554 | Msa1147070:CDS | 35.0% | |
| TCGTGCACATATTAATCTGA+AGG | - | chr7_4:25552574-25552593 | Msa1147070:CDS | 35.0% | |
| !!! | ATCTGAAGGTTTTAAGATGG+GGG | - | chr7_4:25552588-25552607 | Msa1147070:CDS | 35.0% |
| !! | AATAATTTGCTTGGGGGAGA+AGG | + | chr7_4:25552031-25552050 | None:intergenic | 40.0% |
| GGGTTTGAAGATGAAGGTTT+AGG | + | chr7_4:25552067-25552086 | None:intergenic | 40.0% | |
| TGGAATGAATGTGTGAGAGA+GGG | + | chr7_4:25552097-25552116 | None:intergenic | 40.0% | |
| ATGGAATGAATGTGTGAGAG+AGG | + | chr7_4:25552098-25552117 | None:intergenic | 40.0% | |
| ! | CTTACTCATCCATTGGTTGA+TGG | + | chr7_4:25552117-25552136 | None:intergenic | 40.0% |
| ! | TGGTTTGGGTAGTAATCCTT+TGG | + | chr7_4:25552242-25552261 | None:intergenic | 40.0% |
| ! | GTTATGTCGTTTCGTTGGTT+TGG | + | chr7_4:25552257-25552276 | None:intergenic | 40.0% |
| GAATACGGCGATTGTGAAAA+GGG | + | chr7_4:25552357-25552376 | None:intergenic | 40.0% | |
| ! | TTTAAGACCTTGAGCGACAA+GGG | + | chr7_4:25552510-25552529 | None:intergenic | 40.0% |
| TCTTCTCAACAGTAAGGATG+TGG | - | chr7_4:25552541-25552560 | Msa1147070:CDS | 40.0% | |
| !!! | GTTTTAAGATGGGGGATGTT+GGG | - | chr7_4:25552596-25552615 | Msa1147070:CDS | 40.0% |
| !! | ATCTGCTTTGGGATCTGTTA+TGG | - | chr7_4:25552619-25552638 | Msa1147070:intron | 40.0% |
| !! | TCTGCTTTGGGATCTGTTAT+GGG | - | chr7_4:25552620-25552639 | Msa1147070:intron | 40.0% |
| ! | TCTTGTTACTTCTGCTCTTG+TGG | - | chr7_4:25552748-25552767 | Msa1147070:five_prime_UTR | 40.0% |
| !! | AATAATTTGCTTGGGGGAGA+AGG | + | chr7_4:25552031-25552050 | None:intergenic | 40.0% |
| GGGTTTGAAGATGAAGGTTT+AGG | + | chr7_4:25552067-25552086 | None:intergenic | 40.0% | |
| TGGAATGAATGTGTGAGAGA+GGG | + | chr7_4:25552097-25552116 | None:intergenic | 40.0% | |
| ATGGAATGAATGTGTGAGAG+AGG | + | chr7_4:25552098-25552117 | None:intergenic | 40.0% | |
| ! | CTTACTCATCCATTGGTTGA+TGG | + | chr7_4:25552117-25552136 | None:intergenic | 40.0% |
| ! | TGGTTTGGGTAGTAATCCTT+TGG | + | chr7_4:25552242-25552261 | None:intergenic | 40.0% |
| ! | GTTATGTCGTTTCGTTGGTT+TGG | + | chr7_4:25552257-25552276 | None:intergenic | 40.0% |
| GAATACGGCGATTGTGAAAA+GGG | + | chr7_4:25552357-25552376 | None:intergenic | 40.0% | |
| ! | TTTAAGACCTTGAGCGACAA+GGG | + | chr7_4:25552510-25552529 | None:intergenic | 40.0% |
| TCTTCTCAACAGTAAGGATG+TGG | - | chr7_4:25552541-25552560 | Msa1147070:CDS | 40.0% | |
| !!! | GTTTTAAGATGGGGGATGTT+GGG | - | chr7_4:25552596-25552615 | Msa1147070:CDS | 40.0% |
| !! | ATCTGCTTTGGGATCTGTTA+TGG | - | chr7_4:25552619-25552638 | Msa1147070:intron | 40.0% |
| !! | TCTGCTTTGGGATCTGTTAT+GGG | - | chr7_4:25552620-25552639 | Msa1147070:intron | 40.0% |
| ! | TCTTGTTACTTCTGCTCTTG+TGG | - | chr7_4:25552748-25552767 | Msa1147070:five_prime_UTR | 40.0% |
| GTGATTGCTTGCTTTGTAGC+TGG | + | chr7_4:25551958-25551977 | None:intergenic | 45.0% | |
| AATGTGTGAGAGAGGGTGAA+GGG | + | chr7_4:25552090-25552109 | None:intergenic | 45.0% | |
| ! | GTTGACTAGTCCGTCTAATG+CGG | + | chr7_4:25552327-25552346 | None:intergenic | 45.0% |
| CGAATACGGCGATTGTGAAA+AGG | + | chr7_4:25552358-25552377 | None:intergenic | 45.0% | |
| TTCACAATCGCCGTATTCGT+CGG | - | chr7_4:25552359-25552378 | Msa1147070:CDS | 45.0% | |
| TAGAGATAGGCCGACGAATA+CGG | + | chr7_4:25552372-25552391 | None:intergenic | 45.0% | |
| ! | GTTTAAGACCTTGAGCGACA+AGG | + | chr7_4:25552511-25552530 | None:intergenic | 45.0% |
| !!! | GGTTTTAAGATGGGGGATGT+TGG | - | chr7_4:25552595-25552614 | Msa1147070:CDS | 45.0% |
| !! | CTGCTTTGGGATCTGTTATG+GGG | - | chr7_4:25552621-25552640 | Msa1147070:intron | 45.0% |
| AGATTGGGGATGTTGTCTTG+TGG | - | chr7_4:25552686-25552705 | Msa1147070:intron | 45.0% | |
| GATTGGGGATGTTGTCTTGT+GGG | - | chr7_4:25552687-25552706 | Msa1147070:intron | 45.0% | |
| ! | TGCTCATGCTGTTGCTGTTA+TGG | - | chr7_4:25552721-25552740 | Msa1147070:intron | 45.0% |
| GTGATTGCTTGCTTTGTAGC+TGG | + | chr7_4:25551958-25551977 | None:intergenic | 45.0% | |
| AATGTGTGAGAGAGGGTGAA+GGG | + | chr7_4:25552090-25552109 | None:intergenic | 45.0% | |
| ! | GTTGACTAGTCCGTCTAATG+CGG | + | chr7_4:25552327-25552346 | None:intergenic | 45.0% |
| CGAATACGGCGATTGTGAAA+AGG | + | chr7_4:25552358-25552377 | None:intergenic | 45.0% | |
| TTCACAATCGCCGTATTCGT+CGG | - | chr7_4:25552359-25552378 | Msa1147070:CDS | 45.0% | |
| TAGAGATAGGCCGACGAATA+CGG | + | chr7_4:25552372-25552391 | None:intergenic | 45.0% | |
| ! | GTTTAAGACCTTGAGCGACA+AGG | + | chr7_4:25552511-25552530 | None:intergenic | 45.0% |
| !!! | GGTTTTAAGATGGGGGATGT+TGG | - | chr7_4:25552595-25552614 | Msa1147070:CDS | 45.0% |
| !! | CTGCTTTGGGATCTGTTATG+GGG | - | chr7_4:25552621-25552640 | Msa1147070:intron | 45.0% |
| AGATTGGGGATGTTGTCTTG+TGG | - | chr7_4:25552686-25552705 | Msa1147070:intron | 45.0% | |
| GATTGGGGATGTTGTCTTGT+GGG | - | chr7_4:25552687-25552706 | Msa1147070:intron | 45.0% | |
| ! | TGCTCATGCTGTTGCTGTTA+TGG | - | chr7_4:25552721-25552740 | Msa1147070:intron | 45.0% |
| GAAGGGGGGTTTGAAGATGA+AGG | + | chr7_4:25552073-25552092 | None:intergenic | 50.0% | |
| ATGTGTGAGAGAGGGTGAAG+GGG | + | chr7_4:25552089-25552108 | None:intergenic | 50.0% | |
| GAATGTGTGAGAGAGGGTGA+AGG | + | chr7_4:25552091-25552110 | None:intergenic | 50.0% | |
| !! | GTGGACGCTTGTTGTTGAAG+AGG | + | chr7_4:25552300-25552319 | None:intergenic | 50.0% |
| GGCCTATCTCTAACAACTCC+AGG | - | chr7_4:25552380-25552399 | Msa1147070:CDS | 50.0% | |
| GGCCTGGAGTTGTTAGAGAT+AGG | + | chr7_4:25552385-25552404 | None:intergenic | 50.0% | |
| TCATCTTCCCTTGTCGCTCA+AGG | - | chr7_4:25552500-25552519 | Msa1147070:CDS | 50.0% | |
| GGGATGTTGGGATCTGCTTT+GGG | - | chr7_4:25552608-25552627 | Msa1147070:CDS | 50.0% | |
| GAAGGGGGGTTTGAAGATGA+AGG | + | chr7_4:25552073-25552092 | None:intergenic | 50.0% | |
| ATGTGTGAGAGAGGGTGAAG+GGG | + | chr7_4:25552089-25552108 | None:intergenic | 50.0% | |
| GAATGTGTGAGAGAGGGTGA+AGG | + | chr7_4:25552091-25552110 | None:intergenic | 50.0% | |
| !! | GTGGACGCTTGTTGTTGAAG+AGG | + | chr7_4:25552300-25552319 | None:intergenic | 50.0% |
| GGCCTATCTCTAACAACTCC+AGG | - | chr7_4:25552380-25552399 | Msa1147070:CDS | 50.0% | |
| GGCCTGGAGTTGTTAGAGAT+AGG | + | chr7_4:25552385-25552404 | None:intergenic | 50.0% | |
| TCATCTTCCCTTGTCGCTCA+AGG | - | chr7_4:25552500-25552519 | Msa1147070:CDS | 50.0% | |
| GGGATGTTGGGATCTGCTTT+GGG | - | chr7_4:25552608-25552627 | Msa1147070:CDS | 50.0% | |
| TTGCTTGGGGGAGAAGGAGA+GGG | + | chr7_4:25552025-25552044 | None:intergenic | 55.0% | |
| TTTGCTTGGGGGAGAAGGAG+AGG | + | chr7_4:25552026-25552045 | None:intergenic | 55.0% | |
| TGTGTGAGAGAGGGTGAAGG+GGG | + | chr7_4:25552088-25552107 | None:intergenic | 55.0% | |
| GTCCACGTCACCGCATTAGA+CGG | - | chr7_4:25552314-25552333 | Msa1147070:CDS | 55.0% | |
| CTTCTTTGCGACGTCGATGC+CGG | + | chr7_4:25552441-25552460 | None:intergenic | 55.0% | |
| GGGGATGTTGGGATCTGCTT+TGG | - | chr7_4:25552607-25552626 | Msa1147070:CDS | 55.0% | |
| TTGCTTGGGGGAGAAGGAGA+GGG | + | chr7_4:25552025-25552044 | None:intergenic | 55.0% | |
| TTTGCTTGGGGGAGAAGGAG+AGG | + | chr7_4:25552026-25552045 | None:intergenic | 55.0% | |
| TGTGTGAGAGAGGGTGAAGG+GGG | + | chr7_4:25552088-25552107 | None:intergenic | 55.0% | |
| GTCCACGTCACCGCATTAGA+CGG | - | chr7_4:25552314-25552333 | Msa1147070:CDS | 55.0% | |
| CTTCTTTGCGACGTCGATGC+CGG | + | chr7_4:25552441-25552460 | None:intergenic | 55.0% | |
| GGGGATGTTGGGATCTGCTT+TGG | - | chr7_4:25552607-25552626 | Msa1147070:CDS | 55.0% | |
| GTGTGAGAGAGGGTGAAGGG+GGG | + | chr7_4:25552087-25552106 | None:intergenic | 60.0% | |
| GTCCGTCTAATGCGGTGACG+TGG | + | chr7_4:25552319-25552338 | None:intergenic | 60.0% | |
| AGCGATTCTCCAGGCTGCGT+TGG | + | chr7_4:25552406-25552425 | None:intergenic | 60.0% | |
| CGCAAGAGGAGCGATTCTCC+AGG | + | chr7_4:25552415-25552434 | None:intergenic | 60.0% | |
| AATCGCTCCTCTTGCGACGC+CGG | - | chr7_4:25552419-25552438 | Msa1147070:CDS | 60.0% | |
| GTGTGAGAGAGGGTGAAGGG+GGG | + | chr7_4:25552087-25552106 | None:intergenic | 60.0% | |
| GTCCGTCTAATGCGGTGACG+TGG | + | chr7_4:25552319-25552338 | None:intergenic | 60.0% | |
| AGCGATTCTCCAGGCTGCGT+TGG | + | chr7_4:25552406-25552425 | None:intergenic | 60.0% | |
| CGCAAGAGGAGCGATTCTCC+AGG | + | chr7_4:25552415-25552434 | None:intergenic | 60.0% | |
| AATCGCTCCTCTTGCGACGC+CGG | - | chr7_4:25552419-25552438 | Msa1147070:CDS | 60.0% | |
| AACTCCAGGCCAACGCAGCC+TGG | - | chr7_4:25552394-25552413 | Msa1147070:CDS | 65.0% | |
| ! | TTCTCCAGGCTGCGTTGGCC+TGG | + | chr7_4:25552401-25552420 | None:intergenic | 65.0% |
| AACTCCAGGCCAACGCAGCC+TGG | - | chr7_4:25552394-25552413 | Msa1147070:CDS | 65.0% | |
| ! | TTCTCCAGGCTGCGTTGGCC+TGG | + | chr7_4:25552401-25552420 | None:intergenic | 65.0% |
| GTCGATGCCGGCGTCGCAAG+AGG | + | chr7_4:25552429-25552448 | None:intergenic | 70.0% | |
| GTCGATGCCGGCGTCGCAAG+AGG | + | chr7_4:25552429-25552448 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 25551905 | 25552960 | 25551905 | ID=Msa1147070;Name=Msa1147070 |
| chr7_4 | mRNA | 25551905 | 25552960 | 25551905 | ID=Msa1147070-mRNA-1;Parent=Msa1147070;Name=Msa1147070-mRNA-1;_AED=0.00;_eAED=0.00;_QI=219|1|1|1|0|0|2|152|193 |
| chr7_4 | exon | 25551905 | 25552630 | 25551905 | ID=Msa1147070-mRNA-1:exon:6317;Parent=Msa1147070-mRNA-1 |
| chr7_4 | exon | 25552734 | 25552960 | 25552734 | ID=Msa1147070-mRNA-1:exon:6316;Parent=Msa1147070-mRNA-1 |
| chr7_4 | five_prime_UTR | 25552742 | 25552960 | 25552742 | ID=Msa1147070-mRNA-1:five_prime_utr;Parent=Msa1147070-mRNA-1 |
| chr7_4 | CDS | 25552734 | 25552741 | 25552734 | ID=Msa1147070-mRNA-1:cds;Parent=Msa1147070-mRNA-1 |
| chr7_4 | CDS | 25552057 | 25552630 | 25552057 | ID=Msa1147070-mRNA-1:cds;Parent=Msa1147070-mRNA-1 |
| chr7_4 | three_prime_UTR | 25551905 | 25552056 | 25551905 | ID=Msa1147070-mRNA-1:three_prime_utr;Parent=Msa1147070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
