AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126910 MtrunA17_Chr7g0269121 99.346 153 1 0 3 155 294 446 2.31e-103 303
Msa1126910 MtrunA17_Chr1g0182941 32.450 151 82 3 3 153 195 325 6.76e-16 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126910 AT1G02910.1 77.124 153 35 0 3 155 301 453 1.79e-79 242
Msa1126910 AT1G02910.2 74.603 63 16 0 3 65 301 363 3.32e-24 96.7
Msa1126910 AT4G28740.1 28.931 159 75 4 3 153 211 339 1.71e-11 61.2

Find 53 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTATTCTTCCTAAAATT+TGG 0.154595 7_3:-78450811 Msa1126910:three_prime_UTR
GCCGAGGCTCTTCCATCTAT+TGG 0.209787 7_3:-78452315 Msa1126910:CDS
TACATAATACTGCGCCTAGA+TGG 0.254686 7_3:-78451680 Msa1126910:CDS
CCGAGGCTCTTCCATCTATT+GGG 0.259951 7_3:-78452314 Msa1126910:CDS
CTACTGTTATAGCTTAAATT+AGG 0.261959 7_3:-78450625 Msa1126910:three_prime_UTR
AAAATTGAAAAGAAAGGTTT+TGG 0.310155 7_3:-78452354 Msa1126910:CDS
ACCTATACTCTATATACATT+GGG 0.315583 7_3:+78450579 None:intergenic
GCGGAAGCTCCTTTGCAATT+TGG 0.322167 7_3:+78450887 None:intergenic
GGCTGTCTCGCCAGCAGAAT+GGG 0.369774 7_3:-78452126 Msa1126910:CDS
CTAACAAAACACCACGTCTA+AGG 0.371298 7_3:+78452409 None:intergenic
CAAAATTGAAAGCTGAAGTT+AGG 0.374638 7_3:-78452160 Msa1126910:CDS
ATGTACACGTCTTCACCAAC+TGG 0.388064 7_3:+78451698 None:intergenic
GATGGGCGAGTTCGAAGATC+AGG 0.392817 7_3:-78451662 Msa1126910:CDS
CCTCGGCAGCCTTTGGTTGA+AGG 0.396160 7_3:+78452331 None:intergenic
GGAAGAGCCTCGGCAGCCTT+TGG 0.402943 7_3:+78452324 None:intergenic
TCAAGTCTCACCCCAATAGA+TGG 0.404757 7_3:+78452303 None:intergenic
CTTAAAATTGCTTCCATTGG+CGG 0.415831 7_3:+78450868 None:intergenic
GAAAGCTGAAGTTAGGTTCA+AGG 0.431841 7_3:-78452153 Msa1126910:CDS
CCCCAATGTATATAGAGTAT+AGG 0.434099 7_3:-78450580 Msa1126910:three_prime_UTR
GAAACCAAAATTGAAAAGAA+AGG 0.434754 7_3:-78452360 Msa1126910:CDS
TTTGCAATTTGGTCCCAGTC+AGG 0.440992 7_3:+78450898 None:intergenic
TTGCTTAAAATTGCTTCCAT+TGG 0.443356 7_3:+78450865 None:intergenic
TTTGTTAGTTCCGGTCATCT+GGG 0.453240 7_3:-78452394 Msa1126910:CDS
CTATTCTTCCTAAAATTTGG+AGG 0.460946 7_3:-78450808 Msa1126910:three_prime_UTR
AACCTATACTCTATATACAT+TGG 0.475314 7_3:+78450578 None:intergenic
AGGCTGTCTCGCCAGCAGAA+TGG 0.494664 7_3:-78452127 Msa1126910:CDS
AGCTTAAATTAGGAATCTGC+AGG 0.509347 7_3:-78450615 Msa1126910:three_prime_UTR
CCTTCAACCAAAGGCTGCCG+AGG 0.516966 7_3:-78452331 Msa1126910:CDS
GAAGAAATATTACTTTAAGT+CGG 0.517966 7_3:-78450652 Msa1126910:three_prime_UTR
TGCAAAGGAGCTTCCGCCAA+TGG 0.521860 7_3:-78450881 Msa1126910:CDS
ACATAATACTGCGCCTAGAT+GGG 0.527292 7_3:-78451679 Msa1126910:CDS
TATTCTTCCTAAAATTTGGA+GGG 0.529899 7_3:-78450807 Msa1126910:three_prime_UTR
ATCTTCGAACTCGCCCATCT+AGG 0.534361 7_3:+78451666 None:intergenic
ATTGTCTATAGTAGTGATAG+TGG 0.541896 7_3:+78450710 None:intergenic
ATTTGCAGGGTATACCTGAC+TGG 0.543556 7_3:-78450912 Msa1126910:intron
CTACCTTCTCCCCAGATGAC+CGG 0.547128 7_3:+78452384 None:intergenic
AAGTACCGTTCCCATTCTGC+TGG 0.548151 7_3:+78452116 None:intergenic
GTTCCGGTCATCTGGGGAGA+AGG 0.549388 7_3:-78452387 Msa1126910:CDS
TGAAGTTAGGTTCAAGGCTG+AGG 0.551548 7_3:-78452147 Msa1126910:CDS
CCCAATAGATGGAAGAGCCT+CGG 0.555211 7_3:+78452314 None:intergenic
AGAGATCAACAGAAGTCTGA+AGG 0.565443 7_3:-78451725 Msa1126910:CDS
CGCACTGATCTCCTTAGACG+TGG 0.568893 7_3:-78452420 Msa1126910:CDS
TCTCGCCAGCAGAATGGGAA+CGG 0.600206 7_3:-78452121 Msa1126910:intron
CGAGGCTCTTCCATCTATTG+GGG 0.602519 7_3:-78452313 Msa1126910:intron
TTGTTAGTTCCGGTCATCTG+GGG 0.606306 7_3:-78452393 Msa1126910:CDS
ATGGGCGAGTTCGAAGATCA+GGG 0.615817 7_3:-78451661 Msa1126910:CDS
GTCTATAGTAGTGATAGTGG+AGG 0.631418 7_3:+78450713 None:intergenic
TTTGCAGGGTATACCTGACT+GGG 0.637662 7_3:-78450911 Msa1126910:intron
CCTATACTCTATATACATTG+GGG 0.643524 7_3:+78450580 None:intergenic
TGTACACGTCTTCACCAACT+GGG 0.656974 7_3:+78451699 None:intergenic
TGACTGGGACCAAATTGCAA+AGG 0.667942 7_3:-78450896 Msa1126910:CDS
AGTGACTTTAGCTTTGCGCA+AGG 0.669503 7_3:-78452454 Msa1126910:CDS
AAGTCTGAAGGAGTCCCAGT+TGG 0.669604 7_3:-78451713 Msa1126910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGAAAGTATAATATAA+TGG + chr7_3:78450814-78450833 None:intergenic 10.0%
!! TATACTTTCTTATTAAATTA+TGG - chr7_3:78450820-78450839 Msa1126910:three_prime_UTR 10.0%
!! ATACTTTCTTATTAAATTAT+GGG - chr7_3:78450821-78450840 Msa1126910:three_prime_UTR 10.0%
!! TAATAAATAGATTAAAGATT+AGG + chr7_3:78451520-78451539 None:intergenic 10.0%
!! TTATTATTGAGATTAATTAA+AGG - chr7_3:78451534-78451553 Msa1126910:intron 10.0%
!!! TTACAATTAATAAGTTTTAA+TGG - chr7_3:78452904-78452923 Msa1126910:intron 10.0%
!! TAATTAAGAAAAAAAAAGTG+AGG + chr7_3:78450534-78450553 None:intergenic 15.0%
!!! TTATTTTCCATCATATTTTT+TGG - chr7_3:78450551-78450570 Msa1126910:three_prime_UTR 15.0%
!!! TATTTTCCATCATATTTTTT+GGG - chr7_3:78450552-78450571 Msa1126910:three_prime_UTR 15.0%
!! AAAAAATATGGATAATACTT+TGG + chr7_3:78450738-78450757 None:intergenic 15.0%
!!! ATTATCCATATTTTTTTTGT+TGG - chr7_3:78450742-78450761 Msa1126910:three_prime_UTR 15.0%
!!! GACAACTTTTTAATAATAAT+CGG - chr7_3:78450872-78450891 Msa1126910:CDS 15.0%
!!! TCAAATTAATTTTACATCTT+AGG - chr7_3:78452186-78452205 Msa1126910:CDS 15.0%
!!! ATTAAATTATGGGTTTTTCT+TGG - chr7_3:78450831-78450850 Msa1126910:three_prime_UTR 20.0%
!!! AAAACCTTTCTTTTCAATTT+TGG + chr7_3:78451225-78451244 None:intergenic 20.0%
!!! AAAATTGAAAAGAAAGGTTT+TGG - chr7_3:78451224-78451243 Msa1126910:intron 20.0%
!!! AGTAACCATAAAATTTTGTT+AGG - chr7_3:78451356-78451375 Msa1126910:intron 20.0%
!!! ATCTTCCTAACAAAATTTTA+TGG + chr7_3:78451364-78451383 None:intergenic 20.0%
!!! GATGTAAAGTTATTTTAAAC+TGG + chr7_3:78451695-78451714 None:intergenic 20.0%
!! TTTGGATAAATAGCTTAAAT+AGG - chr7_3:78452214-78452233 Msa1126910:intron 20.0%
!! ATCTACATATACTAATAGAT+AGG - chr7_3:78452638-78452657 Msa1126910:intron 20.0%
!!! ATGTACAATTTTTAGTTTAG+TGG + chr7_3:78452840-78452859 Msa1126920:intron 20.0%
!! GAAGAAATATTACTTTAAGT+CGG - chr7_3:78452926-78452945 Msa1126910:intron 20.0%
!!! ATCCATATTTTTTTTGTTGG+CGG - chr7_3:78450745-78450764 Msa1126910:three_prime_UTR 25.0%
! ATGAAAAAATAAAGAGCAGA+AGG + chr7_3:78451040-78451059 None:intergenic 25.0%
! GAAACCAAAATTGAAAAGAA+AGG - chr7_3:78451218-78451237 Msa1126910:intron 25.0%
! ATCTCGTTATCATTTAAATG+AGG - chr7_3:78451733-78451752 Msa1126910:CDS 25.0%
! CATTTAAATGAGGAGAAAAT+TGG - chr7_3:78451743-78451762 Msa1126910:intron 25.0%
! TAATGCGTGTTAATTTAACT+AGG - chr7_3:78451824-78451843 Msa1126910:intron 25.0%
! AATGACAATTCTACATGAAT+GGG + chr7_3:78451985-78452004 None:intergenic 25.0%
! AAATGACAATTCTACATGAA+TGG + chr7_3:78451986-78452005 None:intergenic 25.0%
! TAAAATCTACTCTCAACATT+TGG - chr7_3:78452092-78452111 Msa1126910:intron 25.0%
! AAAATCTACTCTCAACATTT+GGG - chr7_3:78452093-78452112 Msa1126910:intron 25.0%
! TTAAGCTATTTATCCAAACA+GGG + chr7_3:78452212-78452231 None:intergenic 25.0%
! TTTAAGCTATTTATCCAAAC+AGG + chr7_3:78452213-78452232 None:intergenic 25.0%
! TATATGTAGATTACTCAAAG+TGG + chr7_3:78452629-78452648 None:intergenic 25.0%
! TATTCTTCCTAAAATTTGGA+GGG - chr7_3:78452771-78452790 Msa1126910:intron 25.0%
! CTACTGTTATAGCTTAAATT+AGG - chr7_3:78452953-78452972 Msa1126910:intron 25.0%
! ACCTATACTCTATATACATT+GGG + chr7_3:78453002-78453021 Msa1126920:intron 25.0%
! AACCTATACTCTATATACAT+TGG + chr7_3:78453003-78453022 Msa1126920:intron 25.0%
! TTATTGAGCTTTTGCTTAAC+TGG + chr7_3:78450511-78450530 None:intergenic 30.0%
!!! TTTCCATCATATTTTTTGGG+TGG - chr7_3:78450555-78450574 Msa1126910:three_prime_UTR 30.0%
TATGGATGACATTAAATCTG+GGG + chr7_3:78450645-78450664 None:intergenic 30.0%
GTATGGATGACATTAAATCT+GGG + chr7_3:78450646-78450665 None:intergenic 30.0%
TGTATGGATGACATTAAATC+TGG + chr7_3:78450647-78450666 None:intergenic 30.0%
!!! TCCATATTTTTTTTGTTGGC+GGG - chr7_3:78450746-78450765 Msa1126910:three_prime_UTR 30.0%
!!! GGTTTTAGGTTATAATAGCT+GGG - chr7_3:78451090-78451109 Msa1126910:intron 30.0%
!!! CATTTTTTGCTTAGAAGAGA+AGG + chr7_3:78451314-78451333 None:intergenic 30.0%
!!! CAATTTTGATTGTGCAGTTA+CGG + chr7_3:78451406-78451425 None:intergenic 30.0%
CAAAATTGAAAGCTGAAGTT+AGG - chr7_3:78451418-78451437 Msa1126910:intron 30.0%
ATTAGGCGATTCAATTGTAT+AGG + chr7_3:78451503-78451522 None:intergenic 30.0%
TAAATTAACACGCATTAGCA+TGG + chr7_3:78451821-78451840 None:intergenic 30.0%
TCACGAGATGAAAAATATTC+CGG + chr7_3:78452528-78452547 None:intergenic 30.0%
TTGCTTAAAATTGCTTCCAT+TGG + chr7_3:78452716-78452735 None:intergenic 30.0%
!! CAAATTTTAGGAAGAATAGC+AGG + chr7_3:78452769-78452788 None:intergenic 30.0%
CTGCTATTCTTCCTAAAATT+TGG - chr7_3:78452767-78452786 Msa1126910:intron 30.0%
CTATTCTTCCTAAAATTTGG+AGG - chr7_3:78452770-78452789 Msa1126910:intron 30.0%
ATTGTCTATAGTAGTGATAG+TGG + chr7_3:78452871-78452890 Msa1126920:intron 30.0%
CCTATACTCTATATACATTG+GGG + chr7_3:78453001-78453020 Msa1126920:intron 30.0%
!!! ATATTTTTTGGGTGGCACTT+TGG - chr7_3:78450563-78450582 Msa1126910:three_prime_UTR 35.0%
ACCCGCCAACAAAAAAAATA+TGG + chr7_3:78450750-78450769 None:intergenic 35.0%
GAATGTTCTATGTTTAACCG+AGG - chr7_3:78451063-78451082 Msa1126910:intron 35.0%
TCTATGTTTAACCGAGGTTT+CGG - chr7_3:78451069-78451088 Msa1126910:intron 35.0%
ATAACCTAAAACCGAAACCT+CGG + chr7_3:78451083-78451102 None:intergenic 35.0%
!!! CGGTTTTAGGTTATAATAGC+TGG - chr7_3:78451089-78451108 Msa1126910:intron 35.0%
GCATCAACATAATGAAAGTG+TGG - chr7_3:78451765-78451784 Msa1126910:intron 35.0%
GATTGATGTCAACTAAGAGT+TGG - chr7_3:78451787-78451806 Msa1126910:intron 35.0%
TGCGTGTTAATTTAACTAGG+TGG - chr7_3:78451827-78451846 Msa1126910:intron 35.0%
ACTATGAGCATCATTACACA+AGG - chr7_3:78452031-78452050 Msa1126910:intron 35.0%
ATAAGTCATCACAGCAAGAA+AGG + chr7_3:78452122-78452141 None:intergenic 35.0%
!!! GCTGCTTTTATAAGCTATCT+TGG - chr7_3:78452341-78452360 Msa1126910:CDS 35.0%
TCTCGCAAACAATCTTACTA+GGG - chr7_3:78452461-78452480 Msa1126910:CDS 35.0%
AACAAACTAACTCAATCAGC+CGG - chr7_3:78452506-78452525 Msa1126910:intron 35.0%
ATAGATAGGAATGCATTTGC+AGG - chr7_3:78452652-78452671 Msa1126910:intron 35.0%
TAGATAGGAATGCATTTGCA+GGG - chr7_3:78452653-78452672 Msa1126910:intron 35.0%
CTTAAAATTGCTTCCATTGG+CGG + chr7_3:78452713-78452732 None:intergenic 35.0%
! AATTGCACCCTCCAAATTTT+AGG + chr7_3:78452781-78452800 None:intergenic 35.0%
AGCTTAAATTAGGAATCTGC+AGG - chr7_3:78452963-78452982 Msa1126910:intron 35.0%
CCCCAATGTATATAGAGTAT+AGG - chr7_3:78452998-78453017 Msa1126910:intron 35.0%
! GGTGGAAGAAAAGGGTTTTA+GGG - chr7_3:78450462-78450481 Msa1126910:three_prime_UTR 40.0%
!! GTGGAAGAAAAGGGTTTTAG+GGG - chr7_3:78450463-78450482 Msa1126910:three_prime_UTR 40.0%
GTGCCACCCAAAAAATATGA+TGG + chr7_3:78450561-78450580 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG - chr7_3:78450594-78450613 Msa1126910:three_prime_UTR 40.0%
GTCACCGTGACATTAAATCT+GGG - chr7_3:78450595-78450614 Msa1126910:three_prime_UTR 40.0%
GTGACCCAGATTTAATGTCA+CGG + chr7_3:78450602-78450621 None:intergenic 40.0%
! ATTAAATCTGGGGCACACAA+AGG + chr7_3:78450635-78450654 None:intergenic 40.0%
TGTCATCCATACAACACATC+TGG - chr7_3:78450654-78450673 Msa1126910:three_prime_UTR 40.0%
GTCATCCATACAACACATCT+GGG - chr7_3:78450655-78450674 Msa1126910:three_prime_UTR 40.0%
ACACAAAAGGTTGTGTTGTG+TGG + chr7_3:78450681-78450700 None:intergenic 40.0%
! ACACAACACAACCTTTTGTG+TGG - chr7_3:78450680-78450699 Msa1126910:three_prime_UTR 40.0%
TTAAATCTGGGCCACACAAA+AGG + chr7_3:78450694-78450713 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG + chr7_3:78450595-78450614 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG + chr7_3:78450594-78450613 None:intergenic 40.0%
TGGAAAATAGCTTACCTCGA+TGG + chr7_3:78450794-78450813 None:intergenic 40.0%
! TTAACCGAGGTTTCGGTTTT+AGG - chr7_3:78451076-78451095 Msa1126910:intron 40.0%
CTAACAAAACACCACGTCTA+AGG + chr7_3:78451172-78451191 None:intergenic 40.0%
!! ACGTGGTGTTTTGTTAGTTC+CGG - chr7_3:78451175-78451194 Msa1126910:intron 40.0%
! TTTTGTTAGTTCCGGTCATC+TGG - chr7_3:78451183-78451202 Msa1126910:intron 40.0%
TTTGTTAGTTCCGGTCATCT+GGG - chr7_3:78451184-78451203 Msa1126910:intron 40.0%
GAAAGCTGAAGTTAGGTTCA+AGG - chr7_3:78451425-78451444 Msa1126910:intron 40.0%
! TTGTCTTGTCGAGTTGTGAT+TGG + chr7_3:78451598-78451617 None:intergenic 40.0%
AGAGATCAACAGAAGTCTGA+AGG - chr7_3:78451853-78451872 Msa1126910:intron 40.0%
TACATAATACTGCGCCTAGA+TGG - chr7_3:78451898-78451917 Msa1126910:intron 40.0%
ACATAATACTGCGCCTAGAT+GGG - chr7_3:78451899-78451918 Msa1126910:intron 40.0%
TTTACATCTTAGGCCCTGTT+TGG - chr7_3:78452196-78452215 Msa1126910:CDS 40.0%
AAGCTATCTTGGAGAGCTTA+TGG - chr7_3:78452352-78452371 Msa1126910:CDS 40.0%
CTCTCGCAAACAATCTTACT+AGG - chr7_3:78452460-78452479 Msa1126910:CDS 40.0%
! GGAAGCAATTTTAAGCAAGC+TGG - chr7_3:78452718-78452737 Msa1126910:intron 40.0%
!! GTCTATAGTAGTGATAGTGG+AGG + chr7_3:78452868-78452887 Msa1126920:intron 40.0%
TGCAATTGCGGTGGAAGAAA+AGG - chr7_3:78450453-78450472 Msa1126910:three_prime_UTR 45.0%
GCAATTGCGGTGGAAGAAAA+GGG - chr7_3:78450454-78450473 Msa1126910:three_prime_UTR 45.0%
! CGGTGGAAGAAAAGGGTTTT+AGG - chr7_3:78450461-78450480 Msa1126910:three_prime_UTR 45.0%
!!! TTTTTTGGGTGGCACTTTGG+TGG - chr7_3:78450566-78450585 Msa1126910:three_prime_UTR 45.0%
GTGGCCCAGATTTAATGTCA+CGG - chr7_3:78450699-78450718 Msa1126910:three_prime_UTR 45.0%
CTTACCTCGATGGTATGCAA+AGG + chr7_3:78450784-78450803 None:intergenic 45.0%
!! AGTGACTTTAGCTTTGCGCA+AGG - chr7_3:78451124-78451143 Msa1126910:intron 45.0%
TTGTTAGTTCCGGTCATCTG+GGG - chr7_3:78451185-78451204 Msa1126910:intron 45.0%
!! AGGTTTTGGCCTTCAACCAA+AGG - chr7_3:78451238-78451257 Msa1126910:intron 45.0%
TCAAGTCTCACCCCAATAGA+TGG + chr7_3:78451278-78451297 None:intergenic 45.0%
TGAAGTTAGGTTCAAGGCTG+AGG - chr7_3:78451431-78451450 Msa1126910:intron 45.0%
! GTCGAGTTGTGATTGGTTGT+TGG + chr7_3:78451591-78451610 None:intergenic 45.0%
TGTACACGTCTTCACCAACT+GGG + chr7_3:78451882-78451901 None:intergenic 45.0%
ATGTACACGTCTTCACCAAC+TGG + chr7_3:78451883-78451902 None:intergenic 45.0%
ATTTGCAGGGTATACCTGAC+TGG - chr7_3:78452666-78452685 Msa1126910:intron 45.0%
TTTGCAGGGTATACCTGACT+GGG - chr7_3:78452667-78452686 Msa1126910:intron 45.0%
TTTGCAATTTGGTCCCAGTC+AGG + chr7_3:78452683-78452702 None:intergenic 45.0%
TGACTGGGACCAAATTGCAA+AGG - chr7_3:78452682-78452701 Msa1126910:intron 45.0%
TGTGGCCCAGATGTGTTGTA+TGG + chr7_3:78450663-78450682 None:intergenic 50.0%
CTCGATGGTATGCAAAGGTC+GGG + chr7_3:78450779-78450798 None:intergenic 50.0%
CCTCGATGGTATGCAAAGGT+CGG + chr7_3:78450780-78450799 None:intergenic 50.0%
CCCAATAGATGGAAGAGCCT+CGG + chr7_3:78451267-78451286 None:intergenic 50.0%
CCGAGGCTCTTCCATCTATT+GGG - chr7_3:78451264-78451283 Msa1126910:intron 50.0%
CGAGGCTCTTCCATCTATTG+GGG - chr7_3:78451265-78451284 Msa1126910:intron 50.0%
! AAGTACCGTTCCCATTCTGC+TGG + chr7_3:78451465-78451484 None:intergenic 50.0%
AAGTCTGAAGGAGTCCCAGT+TGG - chr7_3:78451865-78451884 Msa1126910:intron 50.0%
ATCTTCGAACTCGCCCATCT+AGG + chr7_3:78451915-78451934 None:intergenic 50.0%
ATGGGCGAGTTCGAAGATCA+GGG - chr7_3:78451917-78451936 Msa1126910:intron 50.0%
GCGGAAGCTCCTTTGCAATT+TGG + chr7_3:78452694-78452713 None:intergenic 50.0%
CCGACCTTTGCATACCATCG+AGG - chr7_3:78450777-78450796 Msa1126910:three_prime_UTR 55.0%
! CGCACTGATCTCCTTAGACG+TGG - chr7_3:78451158-78451177 Msa1126910:intron 55.0%
CTACCTTCTCCCCAGATGAC+CGG + chr7_3:78451197-78451216 None:intergenic 55.0%
GCCGAGGCTCTTCCATCTAT+TGG - chr7_3:78451263-78451282 Msa1126910:intron 55.0%
TCTCGCCAGCAGAATGGGAA+CGG - chr7_3:78451457-78451476 Msa1126910:intron 55.0%
GATGGGCGAGTTCGAAGATC+AGG - chr7_3:78451916-78451935 Msa1126910:intron 55.0%
TGCAAAGGAGCTTCCGCCAA+TGG - chr7_3:78452697-78452716 Msa1126910:intron 55.0%
GTTCCGGTCATCTGGGGAGA+AGG - chr7_3:78451191-78451210 Msa1126910:intron 60.0%
CCTCGGCAGCCTTTGGTTGA+AGG + chr7_3:78451250-78451269 None:intergenic 60.0%
CCTTCAACCAAAGGCTGCCG+AGG - chr7_3:78451247-78451266 Msa1126910:intron 60.0%
AGGCTGTCTCGCCAGCAGAA+TGG - chr7_3:78451451-78451470 Msa1126910:intron 60.0%
GGCTGTCTCGCCAGCAGAAT+GGG - chr7_3:78451452-78451471 Msa1126910:intron 60.0%
GGAAGAGCCTCGGCAGCCTT+TGG + chr7_3:78451257-78451276 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78450446 78453154 78450446 ID=Msa1126910;Name=Msa1126910
chr7_3 mRNA 78450446 78453154 78450446 ID=Msa1126910-mRNA-1;Parent=Msa1126910;Name=Msa1126910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0.75|0.6|0.8|1|1|5|406|155
chr7_3 exon 78450446 78450926 78450446 ID=Msa1126910-mRNA-1:exon:21925;Parent=Msa1126910-mRNA-1
chr7_3 exon 78451658 78451754 78451658 ID=Msa1126910-mRNA-1:exon:21924;Parent=Msa1126910-mRNA-1
chr7_3 exon 78452122 78452222 78452122 ID=Msa1126910-mRNA-1:exon:21923;Parent=Msa1126910-mRNA-1
chr7_3 exon 78452314 78452502 78452314 ID=Msa1126910-mRNA-1:exon:21922;Parent=Msa1126910-mRNA-1
chr7_3 exon 78453149 78453154 78453149 ID=Msa1126910-mRNA-1:exon:21921;Parent=Msa1126910-mRNA-1
chr7_3 CDS 78453149 78453154 78453149 ID=Msa1126910-mRNA-1:cds;Parent=Msa1126910-mRNA-1
chr7_3 CDS 78452314 78452502 78452314 ID=Msa1126910-mRNA-1:cds;Parent=Msa1126910-mRNA-1
chr7_3 CDS 78452122 78452222 78452122 ID=Msa1126910-mRNA-1:cds;Parent=Msa1126910-mRNA-1
chr7_3 CDS 78451658 78451754 78451658 ID=Msa1126910-mRNA-1:cds;Parent=Msa1126910-mRNA-1
chr7_3 CDS 78450852 78450926 78450852 ID=Msa1126910-mRNA-1:cds;Parent=Msa1126910-mRNA-1
chr7_3 three_prime_UTR 78450446 78450851 78450446 ID=Msa1126910-mRNA-1:three_prime_utr;Parent=Msa1126910-mRNA-1
Gene Sequence

>Msa1126910

ATGAAGGTTATAATAGCTGGGAAAAAAGAAACAGTGACTTTAGCTTTGCGCAAGGCAGAGAGATTTCGCACTGATCTCCTTAGACGTGGTGTTTTGTTAGTTCCGGTCATCTGGGGAGAAGGTAGAGAAACCAAAATTGAAAAGAAAGGTTTTGGCCTTCAACCAAAGGCTGCCGAGGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAACACAGTCCGTAACTGCACAATCAAAATTGAAAGCTGAAGTTAGGTTCAAGGCTGAGGCTGTCTCGCCAGCAGAATGGGAACGGTGGATAAGAGATCAACAGAAGTCTGAAGGAGTCCCAGTTGGTGAAGACGTGTACATAATACTGCGCCTAGATGGGCGAGTTCGAAGATCAGGGAGAGGTATACCTGACTGGGACCAAATTGCAAAGGAGCTTCCGCCAATGGAAGCAATTTTAAGCAAGCTGGAAAGATGA

Protein sequence

>Msa1126910

MKVIIAGKKETVTLALRKAERFRTDLLRRGVLLVPVIWGEGRETKIEKKGFGLQPKAAEALPSIGEDFEKRTQSVTAQSKLKAEVRFKAEAVSPAEWERWIRDQQKSEGVPVGEDVYIILRLDGRVRRSGRGIPDWDQIAKELPPMEAILSKLER*