AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384150 MtrunA17_Chr3g0141561 99.420 345 2 0 1 345 1 345 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384150 AT5G42760.1 66.565 329 103 2 9 333 17 342 7.26e-164 461
Msa0384150 AT5G42760.2 65.432 324 105 2 9 328 13 333 6.69e-158 447

Find 111 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCCAATCACTGTAAAAT+TGG 0.235892 3_1:+87254372 Msa0384140:three_prime_UTR
ATATCGTTTGAGTTGCTTAA+AGG 0.250789 3_1:-87254747 Msa0384150:CDS
TGATCCACTTGCTGCTTTGC+TGG 0.277427 3_1:-87255520 Msa0384150:CDS
AGCTTGTTGAAGAGATTTAA+TGG 0.282957 3_1:+87254263 Msa0384140:three_prime_UTR
TGCCACTCTGGTTAAGGATT+TGG 0.289529 3_1:+87254616 Msa0384140:three_prime_UTR
ATCATGTCTGATCAAGTAAA+TGG 0.290117 3_1:-87255705 Msa0384150:CDS
TTGTACTTGGTGGAAGCTTC+TGG 0.291125 3_1:-87254182 Msa0384150:CDS
ATTGTGTGTTACACAAAATA+AGG 0.292177 3_1:+87255726 Msa0384140:three_prime_UTR
AGAGGAGCTTAAAGAGGTTT+GGG 0.296735 3_1:+87255793 Msa0384140:three_prime_UTR
ACCTGTGCTTCTCTGCCATT+TGG 0.304751 3_1:+87255360 Msa0384140:three_prime_UTR
TCATCAAGAAGGCGAAAATA+AGG 0.305831 3_1:+87253923 Msa0384140:intron
TCAAAGTTCTGCGCATAATA+AGG 0.306682 3_1:-87254150 Msa0384150:CDS
GCTTAAAGAGGTTTGGGGTT+GGG 0.307755 3_1:+87255799 Msa0384140:three_prime_UTR
CCACTTGCTGCTTTGCTGGC+AGG 0.313162 3_1:-87255516 Msa0384150:CDS
CCTGTGCTTCTCTGCCATTT+GGG 0.314787 3_1:+87255361 Msa0384140:three_prime_UTR
TAGAGGAGCTTAAAGAGGTT+TGG 0.349102 3_1:+87255792 Msa0384140:three_prime_UTR
GTAAAATTGGAATACTGAAT+TGG 0.351492 3_1:+87254385 Msa0384140:three_prime_UTR
ATGGAAAAGCTTCAAATTGC+AGG 0.352932 3_1:-87254569 Msa0384150:CDS
GTCAGCTGCCACTCTGGTTA+AGG 0.354833 3_1:+87254610 Msa0384140:three_prime_UTR
CAGTTGCATGGCGTTGGATT+GGG 0.355782 3_1:+87254490 Msa0384140:three_prime_UTR
GCAGTTGCATGGCGTTGGAT+TGG 0.356550 3_1:+87254489 Msa0384140:three_prime_UTR
CAGCATGGTGTTCCGTCATC+TGG 0.362251 3_1:+87254209 Msa0384140:three_prime_UTR
CACTTGCTGCTTTGCTGGCA+GGG 0.366484 3_1:-87255515 Msa0384150:CDS
AACAATGCTCGTGAAACTTC+TGG 0.370805 3_1:-87255444 Msa0384150:CDS
GGAGACCCAGATGCCCATTT+CGG 0.372976 3_1:-87254299 Msa0384150:CDS
TGACTTTGCAGAAGTCTTAG+AGG 0.381682 3_1:-87254705 Msa0384150:CDS
CATGTTCTATTCTACGAATC+AGG 0.382111 3_1:+87254112 Msa0384140:intron
ACACAAAATAAGGGATTAAG+AGG 0.386028 3_1:+87255736 Msa0384140:three_prime_UTR
AAGAGGCCGAAATGGGCATC+TGG 0.390257 3_1:+87254293 Msa0384140:three_prime_UTR
GTTGCGTGGACCTGTCGAAC+AGG 0.390970 3_1:+87255624 Msa0384140:three_prime_UTR
TCTGGTTAAGGATTTGGCTT+TGG 0.395848 3_1:+87254622 Msa0384140:three_prime_UTR
AATTATATGATGAAGAATAA+TGG 0.398846 3_1:-87253884 Msa0384150:three_prime_UTR
ACATGTGTGAAGCCAATAGA+TGG 0.399797 3_1:+87254338 Msa0384140:three_prime_UTR
TTTGGCAAGCTGACCTTTGA+AGG 0.402317 3_1:+87255580 Msa0384140:three_prime_UTR
GATCATTCAAGAGGCCGAAA+TGG 0.408961 3_1:+87254285 Msa0384140:three_prime_UTR
CTGTACAATTGCTACACTAT+TGG 0.408983 3_1:-87254034 Msa0384150:three_prime_UTR
CATGTAAAACTTTCACAGAT+TGG 0.409955 3_1:-87254320 Msa0384150:CDS
TGCATGTTATTTATATATAG+AGG 0.416921 3_1:+87255775 Msa0384140:three_prime_UTR
AGCTTAAAGAGGTTTGGGGT+TGG 0.418278 3_1:+87255798 Msa0384140:three_prime_UTR
TTGTGTGTTACACAAAATAA+GGG 0.419061 3_1:+87255727 Msa0384140:three_prime_UTR
CACTATTCTGCAAGCAGCTA+AGG 0.423193 3_1:-87254675 Msa0384150:CDS
CAGGTTGTTCTCCTAGGTGC+AGG 0.437261 3_1:-87255342 Msa0384150:intron
ACTTGCTGCTTTGCTGGCAG+GGG 0.441240 3_1:-87255514 Msa0384150:CDS
TCTTATGTCAGCTGCCACTC+TGG 0.442727 3_1:+87254604 Msa0384140:three_prime_UTR
CTGACATAAGAGAAAATGAT+TGG 0.443102 3_1:-87254592 Msa0384150:CDS
GGTTTAGCTCTGGCCATGCT+TGG 0.443811 3_1:+87255670 Msa0384140:three_prime_UTR
AAAGGACAGCGATGTCTTTG+AGG 0.446558 3_1:-87254729 Msa0384150:CDS
GGGTCAGTATGTAACAAGTC+TGG 0.458829 3_1:+87255645 Msa0384140:three_prime_UTR
TAGCCCTTCCTGCAGCCGTT+TGG 0.463381 3_1:+87255562 Msa0384140:three_prime_UTR
TCTCAGCAGTTGCATGGCGT+TGG 0.466299 3_1:+87254484 Msa0384140:three_prime_UTR
TCCTTGCAGTTAGAACGCTT+TGG 0.467503 3_1:-87255416 Msa0384150:CDS
CGCAACAATTGAAAAGGAAT+GGG 0.471274 3_1:-87255607 Msa0384150:CDS
ACCATGCTGTCGCTTGTACT+TGG 0.472145 3_1:-87254195 Msa0384150:CDS
ATCATTCAAGAGGCCGAAAT+GGG 0.474174 3_1:+87254286 Msa0384140:three_prime_UTR
ATAATAAGGAGTCGGTCATT+CGG 0.478792 3_1:-87254136 Msa0384150:CDS
CTTGCCAAACGGCTGCAGGA+AGG 0.480463 3_1:-87255566 Msa0384150:CDS
TTGCCAAACGGCTGCAGGAA+GGG 0.481862 3_1:-87255565 Msa0384150:CDS
TACCACAGAAGAGCACGGTC+TGG 0.483659 3_1:-87254541 Msa0384150:CDS
AGCACGGTCTGGATTCTAGA+AGG 0.484304 3_1:-87254530 Msa0384150:CDS
GAAGCACAGGTTGTTCTCCT+AGG 0.487419 3_1:-87255348 Msa0384150:CDS
TCAGCTTGCCAAACGGCTGC+AGG 0.487788 3_1:-87255570 Msa0384150:CDS
TGGTGTTCCGTCATCTGGAT+TGG 0.488532 3_1:+87254214 Msa0384140:three_prime_UTR
ATAGATGGTAAAAGTTGGTC+TGG 0.488683 3_1:+87254353 Msa0384140:three_prime_UTR
ACGCAACAATTGAAAAGGAA+TGG 0.493384 3_1:-87255608 Msa0384150:CDS
TGGATTGGGCGAGGTAGTAT+AGG 0.496759 3_1:+87254504 Msa0384140:three_prime_UTR
CCCAAATGGCAGAGAAGCAC+AGG 0.498005 3_1:-87255361 Msa0384150:CDS
ATATATAGAGGAGCTTAAAG+AGG 0.501537 3_1:+87255787 Msa0384140:three_prime_UTR
ACATACTGACCCTGTTCGAC+AGG 0.504111 3_1:-87255634 Msa0384150:CDS
TTATGCGCAGAACTTTGATC+GGG 0.506535 3_1:+87254155 Msa0384140:intron
GCAAAGCAGCAAGTGGATCA+TGG 0.508155 3_1:+87255523 Msa0384140:three_prime_UTR
CATAAGAGAAAATGATTGGA+TGG 0.512586 3_1:-87254588 Msa0384150:CDS
AAATAAGGTTCGAATAACTT+AGG 0.515854 3_1:+87253938 Msa0384140:intron
GGTCCACGCAACAATTGAAA+AGG 0.522870 3_1:-87255613 Msa0384150:CDS
ATTATGCGCAGAACTTTGAT+CGG 0.524410 3_1:+87254154 Msa0384140:intron
CTGTGCTTCTCTGCCATTTG+GGG 0.524576 3_1:+87255362 Msa0384140:three_prime_UTR
GCTTTGGTTTGATTCTAGAC+TGG 0.526315 3_1:-87255400 Msa0384150:CDS
GATGTTCTCAGTTCCCCAAA+TGG 0.527166 3_1:-87255375 Msa0384150:CDS
ATGCTGTCGCTTGTACTTGG+TGG 0.529839 3_1:-87254192 Msa0384150:CDS
GGATTAAGAGGTTTGTGAAG+AGG 0.530128 3_1:+87255748 Msa0384140:three_prime_UTR
ACAAGCTCCGCAACTTGCCT+AGG 0.536607 3_1:-87254247 Msa0384150:CDS
GTTCGAATAACTTAGGTCAA+AGG 0.544773 3_1:+87253945 Msa0384140:intron
CGGCTGCAGGAAGGGCTATG+TGG 0.545627 3_1:-87255557 Msa0384150:CDS
CAATAGTGTAGCAATTGTAC+AGG 0.548574 3_1:+87254035 Msa0384140:intron
GCATGGCGTTGGATTGGGCG+AGG 0.548828 3_1:+87254495 Msa0384140:three_prime_UTR
ACTTATTCATGAAGTCTGCT+AGG 0.551456 3_1:+87254423 Msa0384140:three_prime_UTR
AAGTCTGGAAGGTTTAGCTC+TGG 0.555279 3_1:+87255660 Msa0384140:three_prime_UTR
AGAGGCCGAAATGGGCATCT+GGG 0.562365 3_1:+87254294 Msa0384140:three_prime_UTR
GAGGAGCTTAAAGAGGTTTG+GGG 0.562575 3_1:+87255794 Msa0384140:three_prime_UTR
ATTGTACAGGTGACAACACA+TGG 0.564480 3_1:+87254048 Msa0384140:intron
AGGAATGGGATTTCCTTCAA+AGG 0.566300 3_1:-87255593 Msa0384150:CDS
AGCCAATAGATGGTAAAAGT+TGG 0.570838 3_1:+87254348 Msa0384140:three_prime_UTR
CCTGCCAGCAAAGCAGCAAG+TGG 0.579542 3_1:+87255516 Msa0384140:three_prime_UTR
ACCAAAGCGTTCTAACTGCA+AGG 0.581770 3_1:+87255415 Msa0384140:three_prime_UTR
ATCCAGACCGTGCTCTTCTG+TGG 0.590430 3_1:+87254539 Msa0384140:three_prime_UTR
GCTTGCAAGACAACCAAGCA+TGG 0.591039 3_1:-87255683 Msa0384150:CDS
TAAAATTCTCAGCAGTTGCA+TGG 0.596944 3_1:+87254478 Msa0384140:three_prime_UTR
GGATTGGTTTGTAATGACCT+AGG 0.599942 3_1:+87254230 Msa0384140:three_prime_UTR
CTGATTCGTAGAATAGAACA+TGG 0.603568 3_1:-87254111 Msa0384150:exon
TCAAAGGTCAGCTTGCCAAA+CGG 0.612550 3_1:-87255577 Msa0384150:CDS
ACCAAGTACAAGCGACAGCA+TGG 0.615849 3_1:+87254194 Msa0384140:three_prime_UTR
GTAATGACCTAGGCAAGTTG+CGG 0.618313 3_1:+87254240 Msa0384140:three_prime_UTR
GATTTAATGGATCATTCAAG+AGG 0.619216 3_1:+87254276 Msa0384140:three_prime_UTR
CAGTATGTAACAAGTCTGGA+AGG 0.620530 3_1:+87255649 Msa0384140:three_prime_UTR
TTCTGCGCATAATAAGGAGT+CGG 0.630759 3_1:-87254144 Msa0384150:CDS
CAATTGTGTCTTAACTCACA+CGG 0.633180 3_1:-87254450 Msa0384150:CDS
TTACAAACCAATCCAGATGA+CGG 0.634102 3_1:-87254221 Msa0384150:CDS
TTGCGTGGACCTGTCGAACA+GGG 0.640836 3_1:+87255625 Msa0384140:three_prime_UTR
TTTCTTACCACAGAAGAGCA+CGG 0.661986 3_1:-87254546 Msa0384150:CDS
AGCCAAATCCTTAACCAGAG+TGG 0.662283 3_1:-87254618 Msa0384150:CDS
GTGTCTACAAACCTGCACCT+AGG 0.662807 3_1:+87255331 Msa0384140:intron
GAATACTGAATTGGATAGCG+TGG 0.687583 3_1:+87254394 Msa0384140:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTAATTCTTATTGC+TGG - chr3_1:87255456-87255475 Msa0384150:CDS 15.0%
!! AATTATATGATGAAGAATAA+TGG - chr3_1:87255644-87255663 Msa0384150:CDS 15.0%
!!! TTTTAATTAATTCTTATTGC+TGG - chr3_1:87255456-87255475 Msa0384150:CDS 15.0%
!! AATTATATGATGAAGAATAA+TGG - chr3_1:87255644-87255663 Msa0384150:CDS 15.0%
!!! TGCATGTTATTTATATATAG+AGG + chr3_1:87253756-87253775 Msa0384140:intron 20.0%
!!! GTCTTAAAAGGTTTTAAATA+CGG + chr3_1:87254447-87254466 Msa0384140:three_prime_UTR 20.0%
!! AAAAGATATCTTGTCTTAAA+AGG + chr3_1:87254459-87254478 Msa0384140:three_prime_UTR 20.0%
!! TATTCTATTCCTAGTTAATT+TGG - chr3_1:87254493-87254512 Msa0384150:CDS 20.0%
!! ATTCTATTCCTAGTTAATTT+GGG - chr3_1:87254494-87254513 Msa0384150:CDS 20.0%
!! GAAAAATTATTTCATCAAGA+AGG + chr3_1:87255619-87255638 Msa0384140:three_prime_UTR 20.0%
!!! GAAGAAAGTTACATTTTTTA+GGG + chr3_1:87255727-87255746 Msa0384140:three_prime_UTR 20.0%
!!! TGAAGAAAGTTACATTTTTT+AGG + chr3_1:87255728-87255747 Msa0384140:three_prime_UTR 20.0%
!!! TGCATGTTATTTATATATAG+AGG + chr3_1:87253756-87253775 Msa0384140:intron 20.0%
!!! GTCTTAAAAGGTTTTAAATA+CGG + chr3_1:87254447-87254466 Msa0384140:three_prime_UTR 20.0%
!! AAAAGATATCTTGTCTTAAA+AGG + chr3_1:87254459-87254478 Msa0384140:three_prime_UTR 20.0%
!! TATTCTATTCCTAGTTAATT+TGG - chr3_1:87254493-87254512 Msa0384150:CDS 20.0%
!! ATTCTATTCCTAGTTAATTT+GGG - chr3_1:87254494-87254513 Msa0384150:CDS 20.0%
!! GAAAAATTATTTCATCAAGA+AGG + chr3_1:87255619-87255638 Msa0384140:three_prime_UTR 20.0%
!!! GAAGAAAGTTACATTTTTTA+GGG + chr3_1:87255727-87255746 Msa0384140:three_prime_UTR 20.0%
!!! TGAAGAAAGTTACATTTTTT+AGG + chr3_1:87255728-87255747 Msa0384140:three_prime_UTR 20.0%
! TTGTGTGTTACACAAAATAA+GGG + chr3_1:87253804-87253823 Msa0384140:intron 25.0%
! ATTGTGTGTTACACAAAATA+AGG + chr3_1:87253805-87253824 Msa0384140:intron 25.0%
!! TAATTTGGGATGCAAATATT+TGG - chr3_1:87254508-87254527 Msa0384150:CDS 25.0%
! GTAAAATTGGAATACTGAAT+TGG + chr3_1:87255146-87255165 Msa0384140:intron 25.0%
!! TATTCCAATTTTACAGTGAT+TGG - chr3_1:87255152-87255171 Msa0384150:intron 25.0%
!!! ATAGTCTTTTTCAATACAAG+AGG - chr3_1:87255540-87255559 Msa0384150:CDS 25.0%
!!! TAGTCTTTTTCAATACAAGA+GGG - chr3_1:87255541-87255560 Msa0384150:CDS 25.0%
! AAATAAGGTTCGAATAACTT+AGG + chr3_1:87255593-87255612 Msa0384140:three_prime_UTR 25.0%
! TTGTGTGTTACACAAAATAA+GGG + chr3_1:87253804-87253823 Msa0384140:intron 25.0%
! ATTGTGTGTTACACAAAATA+AGG + chr3_1:87253805-87253824 Msa0384140:intron 25.0%
!! TAATTTGGGATGCAAATATT+TGG - chr3_1:87254508-87254527 Msa0384150:CDS 25.0%
! GTAAAATTGGAATACTGAAT+TGG + chr3_1:87255146-87255165 Msa0384140:intron 25.0%
!! TATTCCAATTTTACAGTGAT+TGG - chr3_1:87255152-87255171 Msa0384150:intron 25.0%
!!! ATAGTCTTTTTCAATACAAG+AGG - chr3_1:87255540-87255559 Msa0384150:CDS 25.0%
!!! TAGTCTTTTTCAATACAAGA+GGG - chr3_1:87255541-87255560 Msa0384150:CDS 25.0%
! AAATAAGGTTCGAATAACTT+AGG + chr3_1:87255593-87255612 Msa0384140:three_prime_UTR 25.0%
ATATATAGAGGAGCTTAAAG+AGG + chr3_1:87253744-87253763 Msa0384140:intron 30.0%
ACACAAAATAAGGGATTAAG+AGG + chr3_1:87253795-87253814 Msa0384140:intron 30.0%
ATCATGTCTGATCAAGTAAA+TGG - chr3_1:87253823-87253842 Msa0384150:three_prime_UTR 30.0%
! ACCAGAAAATTGAAGACTTT+TGG - chr3_1:87254377-87254396 Msa0384150:CDS 30.0%
! CCAGAAAATTGAAGACTTTT+GGG - chr3_1:87254378-87254397 Msa0384150:CDS 30.0%
! CAGAAAATTGAAGACTTTTG+GGG - chr3_1:87254379-87254398 Msa0384150:CDS 30.0%
! AGAAAATTGAAGACTTTTGG+GGG - chr3_1:87254380-87254399 Msa0384150:CDS 30.0%
!! AGTTTCTTGTGTGTTTTTGA+AGG + chr3_1:87254415-87254434 Msa0384140:three_prime_UTR 30.0%
ATTTGCATCCCAAATTAACT+AGG + chr3_1:87254505-87254524 Msa0384140:three_prime_UTR 30.0%
GATGCAAATATTTGGCAAAA+TGG - chr3_1:87254516-87254535 Msa0384150:CDS 30.0%
ACAATTTAGTCGTGTCTAAA+AGG + chr3_1:87254542-87254561 Msa0384140:three_prime_UTR 30.0%
TAATGATTGTTTGGGAACTT+AGG + chr3_1:87254589-87254608 Msa0384140:three_prime_UTR 30.0%
! ATCATTAGACAGGACAATTT+TGG - chr3_1:87254602-87254621 Msa0384150:CDS 30.0%
ATTCTTGCAAAATTTGATGC+AGG - chr3_1:87254743-87254762 Msa0384150:CDS 30.0%
!! ATATCGTTTGAGTTGCTTAA+AGG - chr3_1:87254781-87254800 Msa0384150:intron 30.0%
CTGACATAAGAGAAAATGAT+TGG - chr3_1:87254936-87254955 Msa0384150:intron 30.0%
CATAAGAGAAAATGATTGGA+TGG - chr3_1:87254940-87254959 Msa0384150:intron 30.0%
CATGTAAAACTTTCACAGAT+TGG - chr3_1:87255208-87255227 Msa0384150:intron 30.0%
! GATTTAATGGATCATTCAAG+AGG + chr3_1:87255255-87255274 Msa0384140:intron 30.0%
!! AGCTTGTTGAAGAGATTTAA+TGG + chr3_1:87255268-87255287 Msa0384140:intron 30.0%
TATTGGCAAAAAATGCTAGA+CGG - chr3_1:87255511-87255530 Msa0384150:CDS 30.0%
!!! AGTCTTTTTCAATACAAGAG+GGG - chr3_1:87255542-87255561 Msa0384150:CDS 30.0%
!!! AAAGGCTATTTCTAGCTTTT+TGG + chr3_1:87255568-87255587 Msa0384140:three_prime_UTR 30.0%
ATATATAGAGGAGCTTAAAG+AGG + chr3_1:87253744-87253763 Msa0384140:intron 30.0%
ACACAAAATAAGGGATTAAG+AGG + chr3_1:87253795-87253814 Msa0384140:intron 30.0%
ATCATGTCTGATCAAGTAAA+TGG - chr3_1:87253823-87253842 Msa0384150:three_prime_UTR 30.0%
! ACCAGAAAATTGAAGACTTT+TGG - chr3_1:87254377-87254396 Msa0384150:CDS 30.0%
! CCAGAAAATTGAAGACTTTT+GGG - chr3_1:87254378-87254397 Msa0384150:CDS 30.0%
! CAGAAAATTGAAGACTTTTG+GGG - chr3_1:87254379-87254398 Msa0384150:CDS 30.0%
! AGAAAATTGAAGACTTTTGG+GGG - chr3_1:87254380-87254399 Msa0384150:CDS 30.0%
!! AGTTTCTTGTGTGTTTTTGA+AGG + chr3_1:87254415-87254434 Msa0384140:three_prime_UTR 30.0%
ATTTGCATCCCAAATTAACT+AGG + chr3_1:87254505-87254524 Msa0384140:three_prime_UTR 30.0%
GATGCAAATATTTGGCAAAA+TGG - chr3_1:87254516-87254535 Msa0384150:CDS 30.0%
ACAATTTAGTCGTGTCTAAA+AGG + chr3_1:87254542-87254561 Msa0384140:three_prime_UTR 30.0%
TAATGATTGTTTGGGAACTT+AGG + chr3_1:87254589-87254608 Msa0384140:three_prime_UTR 30.0%
! ATCATTAGACAGGACAATTT+TGG - chr3_1:87254602-87254621 Msa0384150:CDS 30.0%
ATTCTTGCAAAATTTGATGC+AGG - chr3_1:87254743-87254762 Msa0384150:CDS 30.0%
!! ATATCGTTTGAGTTGCTTAA+AGG - chr3_1:87254781-87254800 Msa0384150:intron 30.0%
CTGACATAAGAGAAAATGAT+TGG - chr3_1:87254936-87254955 Msa0384150:intron 30.0%
CATAAGAGAAAATGATTGGA+TGG - chr3_1:87254940-87254959 Msa0384150:intron 30.0%
CATGTAAAACTTTCACAGAT+TGG - chr3_1:87255208-87255227 Msa0384150:intron 30.0%
! GATTTAATGGATCATTCAAG+AGG + chr3_1:87255255-87255274 Msa0384140:intron 30.0%
!! AGCTTGTTGAAGAGATTTAA+TGG + chr3_1:87255268-87255287 Msa0384140:intron 30.0%
TATTGGCAAAAAATGCTAGA+CGG - chr3_1:87255511-87255530 Msa0384150:CDS 30.0%
!!! AGTCTTTTTCAATACAAGAG+GGG - chr3_1:87255542-87255561 Msa0384150:CDS 30.0%
!!! AAAGGCTATTTCTAGCTTTT+TGG + chr3_1:87255568-87255587 Msa0384140:three_prime_UTR 30.0%
! ATTCCTTTTCAATTGTTGCG+TGG + chr3_1:87253921-87253940 Msa0384140:intron 35.0%
ACGCAACAATTGAAAAGGAA+TGG - chr3_1:87253920-87253939 Msa0384150:three_prime_UTR 35.0%
CGCAACAATTGAAAAGGAAT+GGG - chr3_1:87253921-87253940 Msa0384150:three_prime_UTR 35.0%
ATAGTTATCAGAAGCTAACG+CGG - chr3_1:87254323-87254342 Msa0384150:CDS 35.0%
! CCCAAAAGTCTTCAATTTTC+TGG + chr3_1:87254381-87254400 Msa0384140:three_prime_UTR 35.0%
! TGTAACAGCACATTTTAGAC+AGG - chr3_1:87254559-87254578 Msa0384150:CDS 35.0%
TTCCCAAACAATCATTAGAC+AGG - chr3_1:87254592-87254611 Msa0384150:CDS 35.0%
GTCCTGTCTAATGATTGTTT+GGG + chr3_1:87254597-87254616 Msa0384140:three_prime_UTR 35.0%
TGTCCTGTCTAATGATTGTT+TGG + chr3_1:87254598-87254617 Msa0384140:three_prime_UTR 35.0%
!!! AGGACAATTTTGGAACCTTT+TGG - chr3_1:87254612-87254631 Msa0384150:CDS 35.0%
TGCAAAATTTGATGCAGGAA+TGG - chr3_1:87254748-87254767 Msa0384150:CDS 35.0%
ATGGAAAAGCTTCAAATTGC+AGG - chr3_1:87254959-87254978 Msa0384150:intron 35.0%
TAAAATTCTCAGCAGTTGCA+TGG + chr3_1:87255053-87255072 Msa0384140:intron 35.0%
CAATTGTGTCTTAACTCACA+CGG - chr3_1:87255078-87255097 Msa0384150:intron 35.0%
ACTTATTCATGAAGTCTGCT+AGG + chr3_1:87255108-87255127 Msa0384140:intron 35.0%
! ATAGATGGTAAAAGTTGGTC+TGG + chr3_1:87255178-87255197 Msa0384140:intron 35.0%
! GACCAACTTTTACCATCTAT+TGG - chr3_1:87255178-87255197 Msa0384150:intron 35.0%
AGCCAATAGATGGTAAAAGT+TGG + chr3_1:87255183-87255202 Msa0384140:intron 35.0%
TTACAAACCAATCCAGATGA+CGG - chr3_1:87255307-87255326 Msa0384150:intron 35.0%
ATTATGCGCAGAACTTTGAT+CGG + chr3_1:87255377-87255396 Msa0384140:three_prime_UTR 35.0%
TCAAAGTTCTGCGCATAATA+AGG - chr3_1:87255378-87255397 Msa0384150:CDS 35.0%
ATAATAAGGAGTCGGTCATT+CGG - chr3_1:87255392-87255411 Msa0384150:CDS 35.0%
CATGTTCTATTCTACGAATC+AGG + chr3_1:87255419-87255438 Msa0384140:three_prime_UTR 35.0%
! CTGATTCGTAGAATAGAACA+TGG - chr3_1:87255417-87255436 Msa0384150:CDS 35.0%
CAATAGTGTAGCAATTGTAC+AGG + chr3_1:87255496-87255515 Msa0384140:three_prime_UTR 35.0%
CTGTACAATTGCTACACTAT+TGG - chr3_1:87255494-87255513 Msa0384150:CDS 35.0%
ATTGGCAAAAAATGCTAGAC+GGG - chr3_1:87255512-87255531 Msa0384150:CDS 35.0%
GTTCGAATAACTTAGGTCAA+AGG + chr3_1:87255586-87255605 Msa0384140:three_prime_UTR 35.0%
TCATCAAGAAGGCGAAAATA+AGG + chr3_1:87255608-87255627 Msa0384140:three_prime_UTR 35.0%
!! ACGTGTTTTTGAACTGGTTT+GGG + chr3_1:87255782-87255801 Msa0384140:three_prime_UTR 35.0%
! ATTCCTTTTCAATTGTTGCG+TGG + chr3_1:87253921-87253940 Msa0384140:intron 35.0%
ACGCAACAATTGAAAAGGAA+TGG - chr3_1:87253920-87253939 Msa0384150:three_prime_UTR 35.0%
CGCAACAATTGAAAAGGAAT+GGG - chr3_1:87253921-87253940 Msa0384150:three_prime_UTR 35.0%
ATAGTTATCAGAAGCTAACG+CGG - chr3_1:87254323-87254342 Msa0384150:CDS 35.0%
! CCCAAAAGTCTTCAATTTTC+TGG + chr3_1:87254381-87254400 Msa0384140:three_prime_UTR 35.0%
! TGTAACAGCACATTTTAGAC+AGG - chr3_1:87254559-87254578 Msa0384150:CDS 35.0%
TTCCCAAACAATCATTAGAC+AGG - chr3_1:87254592-87254611 Msa0384150:CDS 35.0%
GTCCTGTCTAATGATTGTTT+GGG + chr3_1:87254597-87254616 Msa0384140:three_prime_UTR 35.0%
TGTCCTGTCTAATGATTGTT+TGG + chr3_1:87254598-87254617 Msa0384140:three_prime_UTR 35.0%
!!! AGGACAATTTTGGAACCTTT+TGG - chr3_1:87254612-87254631 Msa0384150:CDS 35.0%
TGCAAAATTTGATGCAGGAA+TGG - chr3_1:87254748-87254767 Msa0384150:CDS 35.0%
ATGGAAAAGCTTCAAATTGC+AGG - chr3_1:87254959-87254978 Msa0384150:intron 35.0%
TAAAATTCTCAGCAGTTGCA+TGG + chr3_1:87255053-87255072 Msa0384140:intron 35.0%
CAATTGTGTCTTAACTCACA+CGG - chr3_1:87255078-87255097 Msa0384150:intron 35.0%
ACTTATTCATGAAGTCTGCT+AGG + chr3_1:87255108-87255127 Msa0384140:intron 35.0%
! ATAGATGGTAAAAGTTGGTC+TGG + chr3_1:87255178-87255197 Msa0384140:intron 35.0%
! GACCAACTTTTACCATCTAT+TGG - chr3_1:87255178-87255197 Msa0384150:intron 35.0%
AGCCAATAGATGGTAAAAGT+TGG + chr3_1:87255183-87255202 Msa0384140:intron 35.0%
TTACAAACCAATCCAGATGA+CGG - chr3_1:87255307-87255326 Msa0384150:intron 35.0%
ATTATGCGCAGAACTTTGAT+CGG + chr3_1:87255377-87255396 Msa0384140:three_prime_UTR 35.0%
TCAAAGTTCTGCGCATAATA+AGG - chr3_1:87255378-87255397 Msa0384150:CDS 35.0%
ATAATAAGGAGTCGGTCATT+CGG - chr3_1:87255392-87255411 Msa0384150:CDS 35.0%
CATGTTCTATTCTACGAATC+AGG + chr3_1:87255419-87255438 Msa0384140:three_prime_UTR 35.0%
! CTGATTCGTAGAATAGAACA+TGG - chr3_1:87255417-87255436 Msa0384150:CDS 35.0%
CAATAGTGTAGCAATTGTAC+AGG + chr3_1:87255496-87255515 Msa0384140:three_prime_UTR 35.0%
CTGTACAATTGCTACACTAT+TGG - chr3_1:87255494-87255513 Msa0384150:CDS 35.0%
ATTGGCAAAAAATGCTAGAC+GGG - chr3_1:87255512-87255531 Msa0384150:CDS 35.0%
GTTCGAATAACTTAGGTCAA+AGG + chr3_1:87255586-87255605 Msa0384140:three_prime_UTR 35.0%
TCATCAAGAAGGCGAAAATA+AGG + chr3_1:87255608-87255627 Msa0384140:three_prime_UTR 35.0%
!! ACGTGTTTTTGAACTGGTTT+GGG + chr3_1:87255782-87255801 Msa0384140:three_prime_UTR 35.0%
AGAGGAGCTTAAAGAGGTTT+GGG + chr3_1:87253738-87253757 Msa0384140:intron 40.0%
TAGAGGAGCTTAAAGAGGTT+TGG + chr3_1:87253739-87253758 Msa0384140:intron 40.0%
GGATTAAGAGGTTTGTGAAG+AGG + chr3_1:87253783-87253802 Msa0384140:intron 40.0%
CAGTATGTAACAAGTCTGGA+AGG + chr3_1:87253882-87253901 Msa0384140:intron 40.0%
AGGAATGGGATTTCCTTCAA+AGG - chr3_1:87253935-87253954 Msa0384150:three_prime_UTR 40.0%
AACAATGCTCGTGAAACTTC+TGG - chr3_1:87254084-87254103 Msa0384150:three_prime_UTR 40.0%
!! GCTTTGGTTTGATTCTAGAC+TGG - chr3_1:87254128-87254147 Msa0384150:exon 40.0%
!!! TCTGGTCTACTGCTGTTTTT+GGG + chr3_1:87254363-87254382 Msa0384140:three_prime_UTR 40.0%
!!! TTCTGGTCTACTGCTGTTTT+TGG + chr3_1:87254364-87254383 Msa0384140:three_prime_UTR 40.0%
! CAGTGATTATGATTAGCTGC+TGG + chr3_1:87254654-87254673 Msa0384140:three_prime_UTR 40.0%
TGACTTTGCAGAAGTCTTAG+AGG - chr3_1:87254823-87254842 Msa0384150:intron 40.0%
! TCTGGTTAAGGATTTGGCTT+TGG + chr3_1:87254909-87254928 Msa0384140:intron 40.0%
TTTCTTACCACAGAAGAGCA+CGG - chr3_1:87254982-87255001 Msa0384150:intron 40.0%
GAATACTGAATTGGATAGCG+TGG + chr3_1:87255137-87255156 Msa0384140:intron 40.0%
CTGGCCAATCACTGTAAAAT+TGG + chr3_1:87255159-87255178 Msa0384140:intron 40.0%
ACATGTGTGAAGCCAATAGA+TGG + chr3_1:87255193-87255212 Msa0384140:intron 40.0%
ATCATTCAAGAGGCCGAAAT+GGG + chr3_1:87255245-87255264 Msa0384140:intron 40.0%
!! GGATTGGTTTGTAATGACCT+AGG + chr3_1:87255301-87255320 Msa0384140:intron 40.0%
TTATGCGCAGAACTTTGATC+GGG + chr3_1:87255376-87255395 Msa0384140:three_prime_UTR 40.0%
TTCTGCGCATAATAAGGAGT+CGG - chr3_1:87255384-87255403 Msa0384150:CDS 40.0%
ATTGTACAGGTGACAACACA+TGG + chr3_1:87255483-87255502 Msa0384140:three_prime_UTR 40.0%
TTGGCAAAAAATGCTAGACG+GGG - chr3_1:87255513-87255532 Msa0384150:CDS 40.0%
!!! TGTTTTTGAACTGGTTTGGG+TGG + chr3_1:87255779-87255798 Msa0384140:three_prime_UTR 40.0%
!! GACGTGTTTTTGAACTGGTT+TGG + chr3_1:87255783-87255802 Msa0384140:three_prime_UTR 40.0%
!! GAGTAGACGTGTTTTTGAAC+TGG + chr3_1:87255788-87255807 Msa0384140:three_prime_UTR 40.0%
AGAGGAGCTTAAAGAGGTTT+GGG + chr3_1:87253738-87253757 Msa0384140:intron 40.0%
TAGAGGAGCTTAAAGAGGTT+TGG + chr3_1:87253739-87253758 Msa0384140:intron 40.0%
GGATTAAGAGGTTTGTGAAG+AGG + chr3_1:87253783-87253802 Msa0384140:intron 40.0%
CAGTATGTAACAAGTCTGGA+AGG + chr3_1:87253882-87253901 Msa0384140:intron 40.0%
AGGAATGGGATTTCCTTCAA+AGG - chr3_1:87253935-87253954 Msa0384150:three_prime_UTR 40.0%
AACAATGCTCGTGAAACTTC+TGG - chr3_1:87254084-87254103 Msa0384150:three_prime_UTR 40.0%
!! GCTTTGGTTTGATTCTAGAC+TGG - chr3_1:87254128-87254147 Msa0384150:exon 40.0%
!!! TCTGGTCTACTGCTGTTTTT+GGG + chr3_1:87254363-87254382 Msa0384140:three_prime_UTR 40.0%
!!! TTCTGGTCTACTGCTGTTTT+TGG + chr3_1:87254364-87254383 Msa0384140:three_prime_UTR 40.0%
! CAGTGATTATGATTAGCTGC+TGG + chr3_1:87254654-87254673 Msa0384140:three_prime_UTR 40.0%
TGACTTTGCAGAAGTCTTAG+AGG - chr3_1:87254823-87254842 Msa0384150:intron 40.0%
! TCTGGTTAAGGATTTGGCTT+TGG + chr3_1:87254909-87254928 Msa0384140:intron 40.0%
TTTCTTACCACAGAAGAGCA+CGG - chr3_1:87254982-87255001 Msa0384150:intron 40.0%
GAATACTGAATTGGATAGCG+TGG + chr3_1:87255137-87255156 Msa0384140:intron 40.0%
CTGGCCAATCACTGTAAAAT+TGG + chr3_1:87255159-87255178 Msa0384140:intron 40.0%
ACATGTGTGAAGCCAATAGA+TGG + chr3_1:87255193-87255212 Msa0384140:intron 40.0%
ATCATTCAAGAGGCCGAAAT+GGG + chr3_1:87255245-87255264 Msa0384140:intron 40.0%
!! GGATTGGTTTGTAATGACCT+AGG + chr3_1:87255301-87255320 Msa0384140:intron 40.0%
TTATGCGCAGAACTTTGATC+GGG + chr3_1:87255376-87255395 Msa0384140:three_prime_UTR 40.0%
TTCTGCGCATAATAAGGAGT+CGG - chr3_1:87255384-87255403 Msa0384150:CDS 40.0%
ATTGTACAGGTGACAACACA+TGG + chr3_1:87255483-87255502 Msa0384140:three_prime_UTR 40.0%
TTGGCAAAAAATGCTAGACG+GGG - chr3_1:87255513-87255532 Msa0384150:CDS 40.0%
!!! TGTTTTTGAACTGGTTTGGG+TGG + chr3_1:87255779-87255798 Msa0384140:three_prime_UTR 40.0%
!! GACGTGTTTTTGAACTGGTT+TGG + chr3_1:87255783-87255802 Msa0384140:three_prime_UTR 40.0%
!! GAGTAGACGTGTTTTTGAAC+TGG + chr3_1:87255788-87255807 Msa0384140:three_prime_UTR 40.0%
! GCTTAAAGAGGTTTGGGGTT+GGG + chr3_1:87253732-87253751 Msa0384140:intron 45.0%
! AGCTTAAAGAGGTTTGGGGT+TGG + chr3_1:87253733-87253752 Msa0384140:intron 45.0%
GAGGAGCTTAAAGAGGTTTG+GGG + chr3_1:87253737-87253756 Msa0384140:intron 45.0%
! AAGTCTGGAAGGTTTAGCTC+TGG + chr3_1:87253871-87253890 Msa0384140:intron 45.0%
GGGTCAGTATGTAACAAGTC+TGG + chr3_1:87253886-87253905 Msa0384140:intron 45.0%
GGTCCACGCAACAATTGAAA+AGG - chr3_1:87253915-87253934 Msa0384150:three_prime_UTR 45.0%
TTTGGCAAGCTGACCTTTGA+AGG + chr3_1:87253951-87253970 Msa0384140:intron 45.0%
TCAAAGGTCAGCTTGCCAAA+CGG - chr3_1:87253951-87253970 Msa0384150:three_prime_UTR 45.0%
TCCTTGCAGTTAGAACGCTT+TGG - chr3_1:87254112-87254131 Msa0384150:exon 45.0%
! ACCAAAGCGTTCTAACTGCA+AGG + chr3_1:87254116-87254135 Msa0384140:intron 45.0%
GATGTTCTCAGTTCCCCAAA+TGG - chr3_1:87254153-87254172 Msa0384150:CDS 45.0%
TTATCAGAAGCTAACGCGGA+TGG - chr3_1:87254327-87254346 Msa0384150:CDS 45.0%
! CAGACTGGCTGTAATCCAAA+AGG + chr3_1:87254630-87254649 Msa0384140:three_prime_UTR 45.0%
AAAGGACAGCGATGTCTTTG+AGG - chr3_1:87254799-87254818 Msa0384150:intron 45.0%
CACTATTCTGCAAGCAGCTA+AGG - chr3_1:87254853-87254872 Msa0384150:intron 45.0%
AGCCAAATCCTTAACCAGAG+TGG - chr3_1:87254910-87254929 Msa0384150:intron 45.0%
TGCCACTCTGGTTAAGGATT+TGG + chr3_1:87254915-87254934 Msa0384140:intron 45.0%
GATCATTCAAGAGGCCGAAA+TGG + chr3_1:87255246-87255265 Msa0384140:intron 45.0%
GTAATGACCTAGGCAAGTTG+CGG + chr3_1:87255291-87255310 Msa0384140:intron 45.0%
! TTGTACTTGGTGGAAGCTTC+TGG - chr3_1:87255346-87255365 Msa0384150:CDS 45.0%
! GCTTAAAGAGGTTTGGGGTT+GGG + chr3_1:87253732-87253751 Msa0384140:intron 45.0%
! AGCTTAAAGAGGTTTGGGGT+TGG + chr3_1:87253733-87253752 Msa0384140:intron 45.0%
GAGGAGCTTAAAGAGGTTTG+GGG + chr3_1:87253737-87253756 Msa0384140:intron 45.0%
! AAGTCTGGAAGGTTTAGCTC+TGG + chr3_1:87253871-87253890 Msa0384140:intron 45.0%
GGGTCAGTATGTAACAAGTC+TGG + chr3_1:87253886-87253905 Msa0384140:intron 45.0%
GGTCCACGCAACAATTGAAA+AGG - chr3_1:87253915-87253934 Msa0384150:three_prime_UTR 45.0%
TTTGGCAAGCTGACCTTTGA+AGG + chr3_1:87253951-87253970 Msa0384140:intron 45.0%
TCAAAGGTCAGCTTGCCAAA+CGG - chr3_1:87253951-87253970 Msa0384150:three_prime_UTR 45.0%
TCCTTGCAGTTAGAACGCTT+TGG - chr3_1:87254112-87254131 Msa0384150:exon 45.0%
! ACCAAAGCGTTCTAACTGCA+AGG + chr3_1:87254116-87254135 Msa0384140:intron 45.0%
GATGTTCTCAGTTCCCCAAA+TGG - chr3_1:87254153-87254172 Msa0384150:CDS 45.0%
TTATCAGAAGCTAACGCGGA+TGG - chr3_1:87254327-87254346 Msa0384150:CDS 45.0%
! CAGACTGGCTGTAATCCAAA+AGG + chr3_1:87254630-87254649 Msa0384140:three_prime_UTR 45.0%
AAAGGACAGCGATGTCTTTG+AGG - chr3_1:87254799-87254818 Msa0384150:intron 45.0%
CACTATTCTGCAAGCAGCTA+AGG - chr3_1:87254853-87254872 Msa0384150:intron 45.0%
AGCCAAATCCTTAACCAGAG+TGG - chr3_1:87254910-87254929 Msa0384150:intron 45.0%
TGCCACTCTGGTTAAGGATT+TGG + chr3_1:87254915-87254934 Msa0384140:intron 45.0%
GATCATTCAAGAGGCCGAAA+TGG + chr3_1:87255246-87255265 Msa0384140:intron 45.0%
GTAATGACCTAGGCAAGTTG+CGG + chr3_1:87255291-87255310 Msa0384140:intron 45.0%
! TTGTACTTGGTGGAAGCTTC+TGG - chr3_1:87255346-87255365 Msa0384150:CDS 45.0%
GCTTGCAAGACAACCAAGCA+TGG - chr3_1:87253845-87253864 Msa0384150:three_prime_UTR 50.0%
ACATACTGACCCTGTTCGAC+AGG - chr3_1:87253894-87253913 Msa0384150:three_prime_UTR 50.0%
GCAAAGCAGCAAGTGGATCA+TGG + chr3_1:87254008-87254027 Msa0384140:intron 50.0%
!! TGATCCACTTGCTGCTTTGC+TGG - chr3_1:87254008-87254027 Msa0384150:three_prime_UTR 50.0%
! CTGTGCTTCTCTGCCATTTG+GGG + chr3_1:87254169-87254188 Msa0384140:three_prime_UTR 50.0%
! CCTGTGCTTCTCTGCCATTT+GGG + chr3_1:87254170-87254189 Msa0384140:three_prime_UTR 50.0%
ACCTGTGCTTCTCTGCCATT+TGG + chr3_1:87254171-87254190 Msa0384140:three_prime_UTR 50.0%
GAAGCACAGGTTGTTCTCCT+AGG - chr3_1:87254180-87254199 Msa0384150:CDS 50.0%
GTGTCTACAAACCTGCACCT+AGG + chr3_1:87254200-87254219 Msa0384140:three_prime_UTR 50.0%
! TGATTAGCTGCTGGTCAGAC+TGG + chr3_1:87254645-87254664 Msa0384140:three_prime_UTR 50.0%
TCTTATGTCAGCTGCCACTC+TGG + chr3_1:87254927-87254946 Msa0384140:intron 50.0%
AGCACGGTCTGGATTCTAGA+AGG - chr3_1:87254998-87255017 Msa0384150:intron 50.0%
! TGGATTGGGCGAGGTAGTAT+AGG + chr3_1:87255027-87255046 Msa0384140:intron 50.0%
! CAGTTGCATGGCGTTGGATT+GGG + chr3_1:87255041-87255060 Msa0384140:intron 50.0%
TGGTGTTCCGTCATCTGGAT+TGG + chr3_1:87255317-87255336 Msa0384140:intron 50.0%
! ACCATGCTGTCGCTTGTACT+TGG - chr3_1:87255333-87255352 Msa0384150:intron 50.0%
ACCAAGTACAAGCGACAGCA+TGG + chr3_1:87255337-87255356 Msa0384140:intron 50.0%
! ATGCTGTCGCTTGTACTTGG+TGG - chr3_1:87255336-87255355 Msa0384150:intron 50.0%
GCTTGCAAGACAACCAAGCA+TGG - chr3_1:87253845-87253864 Msa0384150:three_prime_UTR 50.0%
ACATACTGACCCTGTTCGAC+AGG - chr3_1:87253894-87253913 Msa0384150:three_prime_UTR 50.0%
GCAAAGCAGCAAGTGGATCA+TGG + chr3_1:87254008-87254027 Msa0384140:intron 50.0%
!! TGATCCACTTGCTGCTTTGC+TGG - chr3_1:87254008-87254027 Msa0384150:three_prime_UTR 50.0%
! CTGTGCTTCTCTGCCATTTG+GGG + chr3_1:87254169-87254188 Msa0384140:three_prime_UTR 50.0%
! CCTGTGCTTCTCTGCCATTT+GGG + chr3_1:87254170-87254189 Msa0384140:three_prime_UTR 50.0%
ACCTGTGCTTCTCTGCCATT+TGG + chr3_1:87254171-87254190 Msa0384140:three_prime_UTR 50.0%
GAAGCACAGGTTGTTCTCCT+AGG - chr3_1:87254180-87254199 Msa0384150:CDS 50.0%
GTGTCTACAAACCTGCACCT+AGG + chr3_1:87254200-87254219 Msa0384140:three_prime_UTR 50.0%
! TGATTAGCTGCTGGTCAGAC+TGG + chr3_1:87254645-87254664 Msa0384140:three_prime_UTR 50.0%
TCTTATGTCAGCTGCCACTC+TGG + chr3_1:87254927-87254946 Msa0384140:intron 50.0%
AGCACGGTCTGGATTCTAGA+AGG - chr3_1:87254998-87255017 Msa0384150:intron 50.0%
! TGGATTGGGCGAGGTAGTAT+AGG + chr3_1:87255027-87255046 Msa0384140:intron 50.0%
! CAGTTGCATGGCGTTGGATT+GGG + chr3_1:87255041-87255060 Msa0384140:intron 50.0%
TGGTGTTCCGTCATCTGGAT+TGG + chr3_1:87255317-87255336 Msa0384140:intron 50.0%
! ACCATGCTGTCGCTTGTACT+TGG - chr3_1:87255333-87255352 Msa0384150:intron 50.0%
ACCAAGTACAAGCGACAGCA+TGG + chr3_1:87255337-87255356 Msa0384140:intron 50.0%
! ATGCTGTCGCTTGTACTTGG+TGG - chr3_1:87255336-87255355 Msa0384150:intron 50.0%
!! GGTTTAGCTCTGGCCATGCT+TGG + chr3_1:87253861-87253880 Msa0384140:intron 55.0%
TTGCGTGGACCTGTCGAACA+GGG + chr3_1:87253906-87253925 Msa0384140:intron 55.0%
TTGCCAAACGGCTGCAGGAA+GGG - chr3_1:87253963-87253982 Msa0384150:three_prime_UTR 55.0%
!! CACTTGCTGCTTTGCTGGCA+GGG - chr3_1:87254013-87254032 Msa0384150:three_prime_UTR 55.0%
!! ACTTGCTGCTTTGCTGGCAG+GGG - chr3_1:87254014-87254033 Msa0384150:three_prime_UTR 55.0%
! CCCAAATGGCAGAGAAGCAC+AGG - chr3_1:87254167-87254186 Msa0384150:CDS 55.0%
CAGGTTGTTCTCCTAGGTGC+AGG - chr3_1:87254186-87254205 Msa0384150:CDS 55.0%
GTCAGCTGCCACTCTGGTTA+AGG + chr3_1:87254921-87254940 Msa0384140:intron 55.0%
! TACCACAGAAGAGCACGGTC+TGG - chr3_1:87254987-87255006 Msa0384150:intron 55.0%
ATCCAGACCGTGCTCTTCTG+TGG + chr3_1:87254992-87255011 Msa0384140:intron 55.0%
! GCAGTTGCATGGCGTTGGAT+TGG + chr3_1:87255042-87255061 Msa0384140:intron 55.0%
TCTCAGCAGTTGCATGGCGT+TGG + chr3_1:87255047-87255066 Msa0384140:intron 55.0%
GGAGACCCAGATGCCCATTT+CGG - chr3_1:87255229-87255248 Msa0384150:intron 55.0%
AGAGGCCGAAATGGGCATCT+GGG + chr3_1:87255237-87255256 Msa0384140:intron 55.0%
AAGAGGCCGAAATGGGCATC+TGG + chr3_1:87255238-87255257 Msa0384140:intron 55.0%
ACAAGCTCCGCAACTTGCCT+AGG - chr3_1:87255281-87255300 Msa0384150:intron 55.0%
CAGCATGGTGTTCCGTCATC+TGG + chr3_1:87255322-87255341 Msa0384140:intron 55.0%
!! GGTTTAGCTCTGGCCATGCT+TGG + chr3_1:87253861-87253880 Msa0384140:intron 55.0%
TTGCGTGGACCTGTCGAACA+GGG + chr3_1:87253906-87253925 Msa0384140:intron 55.0%
TTGCCAAACGGCTGCAGGAA+GGG - chr3_1:87253963-87253982 Msa0384150:three_prime_UTR 55.0%
!! CACTTGCTGCTTTGCTGGCA+GGG - chr3_1:87254013-87254032 Msa0384150:three_prime_UTR 55.0%
!! ACTTGCTGCTTTGCTGGCAG+GGG - chr3_1:87254014-87254033 Msa0384150:three_prime_UTR 55.0%
! CCCAAATGGCAGAGAAGCAC+AGG - chr3_1:87254167-87254186 Msa0384150:CDS 55.0%
CAGGTTGTTCTCCTAGGTGC+AGG - chr3_1:87254186-87254205 Msa0384150:CDS 55.0%
GTCAGCTGCCACTCTGGTTA+AGG + chr3_1:87254921-87254940 Msa0384140:intron 55.0%
! TACCACAGAAGAGCACGGTC+TGG - chr3_1:87254987-87255006 Msa0384150:intron 55.0%
ATCCAGACCGTGCTCTTCTG+TGG + chr3_1:87254992-87255011 Msa0384140:intron 55.0%
! GCAGTTGCATGGCGTTGGAT+TGG + chr3_1:87255042-87255061 Msa0384140:intron 55.0%
TCTCAGCAGTTGCATGGCGT+TGG + chr3_1:87255047-87255066 Msa0384140:intron 55.0%
GGAGACCCAGATGCCCATTT+CGG - chr3_1:87255229-87255248 Msa0384150:intron 55.0%
AGAGGCCGAAATGGGCATCT+GGG + chr3_1:87255237-87255256 Msa0384140:intron 55.0%
AAGAGGCCGAAATGGGCATC+TGG + chr3_1:87255238-87255257 Msa0384140:intron 55.0%
ACAAGCTCCGCAACTTGCCT+AGG - chr3_1:87255281-87255300 Msa0384150:intron 55.0%
CAGCATGGTGTTCCGTCATC+TGG + chr3_1:87255322-87255341 Msa0384140:intron 55.0%
GTTGCGTGGACCTGTCGAAC+AGG + chr3_1:87253907-87253926 Msa0384140:intron 60.0%
TCAGCTTGCCAAACGGCTGC+AGG - chr3_1:87253958-87253977 Msa0384150:three_prime_UTR 60.0%
CTTGCCAAACGGCTGCAGGA+AGG - chr3_1:87253962-87253981 Msa0384150:three_prime_UTR 60.0%
TAGCCCTTCCTGCAGCCGTT+TGG + chr3_1:87253969-87253988 Msa0384140:intron 60.0%
CCTGCCAGCAAAGCAGCAAG+TGG + chr3_1:87254015-87254034 Msa0384140:intron 60.0%
!! CCACTTGCTGCTTTGCTGGC+AGG - chr3_1:87254012-87254031 Msa0384150:three_prime_UTR 60.0%
GTTGCGTGGACCTGTCGAAC+AGG + chr3_1:87253907-87253926 Msa0384140:intron 60.0%
TCAGCTTGCCAAACGGCTGC+AGG - chr3_1:87253958-87253977 Msa0384150:three_prime_UTR 60.0%
CTTGCCAAACGGCTGCAGGA+AGG - chr3_1:87253962-87253981 Msa0384150:three_prime_UTR 60.0%
TAGCCCTTCCTGCAGCCGTT+TGG + chr3_1:87253969-87253988 Msa0384140:intron 60.0%
CCTGCCAGCAAAGCAGCAAG+TGG + chr3_1:87254015-87254034 Msa0384140:intron 60.0%
!! CCACTTGCTGCTTTGCTGGC+AGG - chr3_1:87254012-87254031 Msa0384150:three_prime_UTR 60.0%
CGGCTGCAGGAAGGGCTATG+TGG - chr3_1:87253971-87253990 Msa0384150:three_prime_UTR 65.0%
! GCATGGCGTTGGATTGGGCG+AGG + chr3_1:87255036-87255055 Msa0384140:intron 65.0%
CGGCTGCAGGAAGGGCTATG+TGG - chr3_1:87253971-87253990 Msa0384150:three_prime_UTR 65.0%
! GCATGGCGTTGGATTGGGCG+AGG + chr3_1:87255036-87255055 Msa0384140:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87253729 87255821 87253729 ID=Msa0384150;Name=Msa0384150
chr3_1 mRNA 87253729 87255821 87253729 ID=Msa0384150-mRNA-1;Parent=Msa0384150;Name=Msa0384150-mRNA-1;_AED=0.00;_eAED=0.00;_QI=97|1|1|1|1|1|2|401|345
chr3_1 exon 87253729 87254785 87253729 ID=Msa0384150-mRNA-1:exon:23263;Parent=Msa0384150-mRNA-1
chr3_1 exon 87255343 87255821 87255343 ID=Msa0384150-mRNA-1:exon:23262;Parent=Msa0384150-mRNA-1
chr3_1 five_prime_UTR 87255725 87255821 87255725 ID=Msa0384150-mRNA-1:five_prime_utr;Parent=Msa0384150-mRNA-1
chr3_1 CDS 87255343 87255724 87255343 ID=Msa0384150-mRNA-1:cds;Parent=Msa0384150-mRNA-1
chr3_1 CDS 87254130 87254785 87254130 ID=Msa0384150-mRNA-1:cds;Parent=Msa0384150-mRNA-1
chr3_1 three_prime_UTR 87253729 87254129 87253729 ID=Msa0384150-mRNA-1:three_prime_utr;Parent=Msa0384150-mRNA-1
Gene Sequence

>Msa0384150

ATGTCTGATCAAGTAAATGGCTTGCAAGACAACCAAGCATGGCCAGAGCTAAACCTTCCAGACTTGTTACATACTGACCCTGTTCGACAGGTCCACGCAACAATTGAAAAGGAATGGGATTTCCTTCAAAGGTCAGCTTGCCAAACGGCTGCAGGAAGGGCTATGTGGAAGCATGTGATCCATGATCCACTTGCTGCTTTGCTGGCAGGGGAGACTTATTTGAGAAATCTTCATGAAAAGATGAGAAAAGACTATCTCAACAATGCTCGTGAAACTTCTGGAGTGATCCTTGCAGTTAGAACGCTTTGGTTTGATTCTAGACTGGAAGATGTTCTCAGTTCCCCAAATGGCAGAGAAGCACAGGTTGTTCTCCTAGGTGCAGGAATGGATACAAGAGCATATCGTTTGAGTTGCTTAAAGGACAGCGATGTCTTTGAGGTTGACTTTGCAGAAGTCTTAGAGGTAAAAAGCACTATTCTGCAAGCAGCTAAGGAATCAACATACGAGTCACAACATATTATGTCCAAAGCCAAATCCTTAACCAGAGTGGCAGCTGACATAAGAGAAAATGATTGGATGGAAAAGCTTCAAATTGCAGGTTTCTTACCACAGAAGAGCACGGTCTGGATTCTAGAAGGTATCCTATACTACCTCGCCCAATCCAACGCCATGCAACTGCTGAGAATTTTAGCTAACAATTGTGTCTTAACTCACACGGTCATCCTAGCAGACTTCATGAATAAGTCATCAACCACGCTATCCAATTCAGTATTCCAATTTTACAGTGATTGGCCAGACCAACTTTTACCATCTATTGGCTTCACACATGTAAAACTTTCACAGATTGGAGACCCAGATGCCCATTTCGGCCTCTTGAATGATCCATTAAATCTCTTCAACAAGCTCCGCAACTTGCCTAGGTCATTACAAACCAATCCAGATGACGGAACACCATGCTGTCGCTTGTACTTGGTGGAAGCTTCTGGTTCACCCGATCAAAGTTCTGCGCATAATAAGGAGTCGGTCATTCGGTCCTGA

Protein sequence

>Msa0384150

MSDQVNGLQDNQAWPELNLPDLLHTDPVRQVHATIEKEWDFLQRSACQTAAGRAMWKHVIHDPLAALLAGETYLRNLHEKMRKDYLNNARETSGVILAVRTLWFDSRLEDVLSSPNGREAQVVLLGAGMDTRAYRLSCLKDSDVFEVDFAEVLEVKSTILQAAKESTYESQHIMSKAKSLTRVAADIRENDWMEKLQIAGFLPQKSTVWILEGILYYLAQSNAMQLLRILANNCVLTHTVILADFMNKSSTTLSNSVFQFYSDWPDQLLPSIGFTHVKLSQIGDPDAHFGLLNDPLNLFNKLRNLPRSLQTNPDDGTPCCRLYLVEASGSPDQSSAHNKESVIRS*