AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434820 MtrunA17_Chr3g0141561 99.420 345 2 0 1 345 1 345 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434820 AT5G42760.1 66.565 329 103 2 9 333 17 342 7.26e-164 461
Msa0434820 AT5G42760.2 65.432 324 105 2 9 328 13 333 6.69e-158 447

Find 111 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCCAATCACTGTAAAAT+TGG 0.235892 3_2:-87850778 Msa0434830:three_prime_UTR
ATATCGTTTGAGTTGCTTAA+AGG 0.250789 3_2:+87850403 Msa0434820:CDS
TGATCCACTTGCTGCTTTGC+TGG 0.277427 3_2:+87849630 Msa0434820:CDS
AGCTTGTTGAAGAGATTTAA+TGG 0.282957 3_2:-87850887 Msa0434830:three_prime_UTR
TGCCACTCTGGTTAAGGATT+TGG 0.289529 3_2:-87850534 Msa0434830:three_prime_UTR
ATCATGTCTGATCAAGTAAA+TGG 0.290117 3_2:+87849445 Msa0434820:exon
TTGTACTTGGTGGAAGCTTC+TGG 0.291125 3_2:+87850968 Msa0434820:CDS
ATTGTGTGTTACACAAAATA+AGG 0.292177 3_2:-87849424 Msa0434830:three_prime_UTR
CCTGTGCTTCTCTGCCATTC+GGG 0.295298 3_2:-87849789 Msa0434830:three_prime_UTR
AGAGGAGCTTAAAGAGGTTT+GGG 0.296735 3_2:-87849357 Msa0434830:three_prime_UTR
TCATCAAGAAGGCGAAAATA+AGG 0.305831 3_2:-87851227 Msa0434830:intron
TCAAAGTTCTGCGCATAATA+AGG 0.306682 3_2:+87851000 Msa0434820:CDS
GCTTAAAGAGGTTTGGGGTT+GGG 0.307755 3_2:-87849351 Msa0434830:three_prime_UTR
CCACTTGCTGCTTTGCTGGC+AGG 0.313162 3_2:+87849634 Msa0434820:CDS
TAGAGGAGCTTAAAGAGGTT+TGG 0.349102 3_2:-87849358 Msa0434830:three_prime_UTR
GTAAAATTGGAATACTGAAT+TGG 0.351492 3_2:-87850765 Msa0434830:three_prime_UTR
ATGGAAAAGCTTCAAATTGC+AGG 0.352932 3_2:+87850581 Msa0434820:CDS
GTCAGCTGCCACTCTGGTTA+AGG 0.354833 3_2:-87850540 Msa0434830:three_prime_UTR
CAGTTGCATGGCGTTGGATT+GGG 0.355782 3_2:-87850660 Msa0434830:three_prime_UTR
GCAGTTGCATGGCGTTGGAT+TGG 0.356550 3_2:-87850661 Msa0434830:three_prime_UTR
ACCTGTGCTTCTCTGCCATT+CGG 0.360737 3_2:-87849790 Msa0434830:three_prime_UTR
CAGCATGGTGTTCCGTCATC+TGG 0.362251 3_2:-87850941 Msa0434830:three_prime_UTR
CACTTGCTGCTTTGCTGGCA+GGG 0.366484 3_2:+87849635 Msa0434820:CDS
AACAATGCTCGTGAAACTTC+TGG 0.370805 3_2:+87849706 Msa0434820:CDS
GGAGACCCAGATGCCCATTT+CGG 0.372976 3_2:+87850851 Msa0434820:CDS
TGACTTTGCAGAAGTCTTAG+AGG 0.381682 3_2:+87850445 Msa0434820:CDS
CATGTTCTATTCTACGAATC+AGG 0.382111 3_2:-87851038 Msa0434830:intron
ACACAAAATAAGGGATTAAG+AGG 0.386028 3_2:-87849414 Msa0434830:three_prime_UTR
AAGAGGCCGAAATGGGCATC+TGG 0.390257 3_2:-87850857 Msa0434830:three_prime_UTR
GTTGCGTGGACCTGTCGAAC+AGG 0.390970 3_2:-87849526 Msa0434830:three_prime_UTR
TCTGGTTAAGGATTTGGCTT+TGG 0.395848 3_2:-87850528 Msa0434830:three_prime_UTR
AATTATATGATGAAGAATAA+TGG 0.398846 3_2:+87851266 Msa0434820:three_prime_UTR
ACATGTGTGAAGCCAATAGA+TGG 0.399797 3_2:-87850812 Msa0434830:three_prime_UTR
TTTGGCAAGCTGACCTTTGA+AGG 0.402317 3_2:-87849570 Msa0434830:three_prime_UTR
GATCATTCAAGAGGCCGAAA+TGG 0.408961 3_2:-87850865 Msa0434830:three_prime_UTR
CTGTACAATTGCTACACTAT+TGG 0.408983 3_2:+87851116 Msa0434820:three_prime_UTR
CATGTAAAACTTTCACAGAT+TGG 0.409955 3_2:+87850830 Msa0434820:CDS
TGCATGTTATTTATATATAG+AGG 0.416921 3_2:-87849375 Msa0434830:three_prime_UTR
AGCTTAAAGAGGTTTGGGGT+TGG 0.418278 3_2:-87849352 Msa0434830:three_prime_UTR
TTGTGTGTTACACAAAATAA+GGG 0.419061 3_2:-87849423 Msa0434830:three_prime_UTR
CACTATTCTGCAAGCAGCTA+AGG 0.423193 3_2:+87850475 Msa0434820:CDS
CAGGTTGTTCTCCTAGGTGC+AGG 0.437261 3_2:+87849808 Msa0434820:CDS
ACTTGCTGCTTTGCTGGCAG+GGG 0.441240 3_2:+87849636 Msa0434820:CDS
TCTTATGTCAGCTGCCACTC+TGG 0.442727 3_2:-87850546 Msa0434830:three_prime_UTR
CTGACATAAGAGAAAATGAT+TGG 0.443102 3_2:+87850558 Msa0434820:CDS
GGTTTAGCTCTGGCCATGCT+TGG 0.443811 3_2:-87849480 Msa0434830:three_prime_UTR
AAAGGACAGCGATGTCTTTG+AGG 0.446558 3_2:+87850421 Msa0434820:CDS
GGGTCAGTATGTAACAAGTC+TGG 0.458829 3_2:-87849505 Msa0434830:three_prime_UTR
TAGCCCTTCCTGCAGCCGTT+TGG 0.463381 3_2:-87849588 Msa0434830:three_prime_UTR
TCTCAGCAGTTGCATGGCGT+TGG 0.466299 3_2:-87850666 Msa0434830:three_prime_UTR
TCCTTGCAGTTAGAACGCTT+TGG 0.467503 3_2:+87849734 Msa0434820:CDS
CGCAACAATTGAAAAGGAAT+GGG 0.471274 3_2:+87849543 Msa0434820:CDS
ACCATGCTGTCGCTTGTACT+TGG 0.472145 3_2:+87850955 Msa0434820:CDS
ATCATTCAAGAGGCCGAAAT+GGG 0.474174 3_2:-87850864 Msa0434830:three_prime_UTR
ATAATAAGGAGTCGGTCATT+CGG 0.478792 3_2:+87851014 Msa0434820:CDS
CTTGCCAAACGGCTGCAGGA+AGG 0.480463 3_2:+87849584 Msa0434820:CDS
TTGCCAAACGGCTGCAGGAA+GGG 0.481862 3_2:+87849585 Msa0434820:CDS
TACCACAGAAGAGCACGGTC+TGG 0.483659 3_2:+87850609 Msa0434820:CDS
AGCACGGTCTGGATTCTAGA+AGG 0.484304 3_2:+87850620 Msa0434820:CDS
GAAGCACAGGTTGTTCTCCT+AGG 0.487419 3_2:+87849802 Msa0434820:CDS
TCAGCTTGCCAAACGGCTGC+AGG 0.487788 3_2:+87849580 Msa0434820:CDS
TGGTGTTCCGTCATCTGGAT+TGG 0.488532 3_2:-87850936 Msa0434830:three_prime_UTR
ATAGATGGTAAAAGTTGGTC+TGG 0.488683 3_2:-87850797 Msa0434830:three_prime_UTR
ACGCAACAATTGAAAAGGAA+TGG 0.493384 3_2:+87849542 Msa0434820:CDS
TGGATTGGGCGAGGTAGTAT+AGG 0.496759 3_2:-87850646 Msa0434830:three_prime_UTR
ATATATAGAGGAGCTTAAAG+AGG 0.501537 3_2:-87849363 Msa0434830:three_prime_UTR
ACATACTGACCCTGTTCGAC+AGG 0.504111 3_2:+87849516 Msa0434820:CDS
TTATGCGCAGAACTTTGATC+GGG 0.506535 3_2:-87850995 Msa0434830:intron
GCAAAGCAGCAAGTGGATCA+TGG 0.508155 3_2:-87849627 Msa0434830:three_prime_UTR
CCCGAATGGCAGAGAAGCAC+AGG 0.509784 3_2:+87849789 Msa0434820:CDS
CATAAGAGAAAATGATTGGA+TGG 0.512586 3_2:+87850562 Msa0434820:CDS
AAATAAGGTTCGAATAACTT+AGG 0.515854 3_2:-87851212 Msa0434830:intron
GGTCCACGCAACAATTGAAA+AGG 0.522870 3_2:+87849537 Msa0434820:CDS
ATTATGCGCAGAACTTTGAT+CGG 0.524410 3_2:-87850996 Msa0434830:intron
GCTTTGGTTTGATTCTAGAC+TGG 0.526315 3_2:+87849750 Msa0434820:CDS
ATGCTGTCGCTTGTACTTGG+TGG 0.529839 3_2:+87850958 Msa0434820:CDS
GGATTAAGAGGTTTGTGAAG+AGG 0.530128 3_2:-87849402 Msa0434830:three_prime_UTR
ACAAGCTCCGCAACTTGCCT+AGG 0.536607 3_2:+87850903 Msa0434820:CDS
GTTCGAATAACTTAGGTCAA+AGG 0.544773 3_2:-87851205 Msa0434830:intron
CGGCTGCAGGAAGGGCTATG+TGG 0.545627 3_2:+87849593 Msa0434820:CDS
CAATAGTGTAGCAATTGTAC+AGG 0.548574 3_2:-87851115 Msa0434830:intron
GCATGGCGTTGGATTGGGCG+AGG 0.548828 3_2:-87850655 Msa0434830:three_prime_UTR
ACTTATTCATGAAGTCTGCT+AGG 0.551456 3_2:-87850727 Msa0434830:three_prime_UTR
AAGTCTGGAAGGTTTAGCTC+TGG 0.555279 3_2:-87849490 Msa0434830:three_prime_UTR
AGAGGCCGAAATGGGCATCT+GGG 0.562365 3_2:-87850856 Msa0434830:three_prime_UTR
GAGGAGCTTAAAGAGGTTTG+GGG 0.562575 3_2:-87849356 Msa0434830:three_prime_UTR
ATTGTACAGGTGACAACACA+TGG 0.564480 3_2:-87851102 Msa0434830:intron
AGGAATGGGATTTCCTTCAA+AGG 0.566300 3_2:+87849557 Msa0434820:CDS
AGCCAATAGATGGTAAAAGT+TGG 0.570838 3_2:-87850802 Msa0434830:three_prime_UTR
CCTGCCAGCAAAGCAGCAAG+TGG 0.579542 3_2:-87849634 Msa0434830:three_prime_UTR
ACCAAAGCGTTCTAACTGCA+AGG 0.581770 3_2:-87849735 Msa0434830:three_prime_UTR
ATCCAGACCGTGCTCTTCTG+TGG 0.590430 3_2:-87850611 Msa0434830:three_prime_UTR
GCTTGCAAGACAACCAAGCA+TGG 0.591039 3_2:+87849467 Msa0434820:CDS
TAAAATTCTCAGCAGTTGCA+TGG 0.596944 3_2:-87850672 Msa0434830:three_prime_UTR
GGATTGGTTTGTAATGACCT+AGG 0.599942 3_2:-87850920 Msa0434830:three_prime_UTR
CTGATTCGTAGAATAGAACA+TGG 0.603568 3_2:+87851039 Msa0434820:exon
TCAAAGGTCAGCTTGCCAAA+CGG 0.612550 3_2:+87849573 Msa0434820:CDS
ACCAAGTACAAGCGACAGCA+TGG 0.615849 3_2:-87850956 Msa0434830:three_prime_UTR
GTAATGACCTAGGCAAGTTG+CGG 0.618313 3_2:-87850910 Msa0434830:three_prime_UTR
GATTTAATGGATCATTCAAG+AGG 0.619216 3_2:-87850874 Msa0434830:three_prime_UTR
CAGTATGTAACAAGTCTGGA+AGG 0.620530 3_2:-87849501 Msa0434830:three_prime_UTR
GATGTTCTCAGTTCCCCGAA+TGG 0.621167 3_2:+87849775 Msa0434820:CDS
CTGTGCTTCTCTGCCATTCG+GGG 0.625733 3_2:-87849788 Msa0434830:three_prime_UTR
TTCTGCGCATAATAAGGAGT+CGG 0.630759 3_2:+87851006 Msa0434820:CDS
CAATTGTGTCTTAACTCACA+CGG 0.633180 3_2:+87850700 Msa0434820:CDS
TTACAAACCAATCCAGATGA+CGG 0.634102 3_2:+87850929 Msa0434820:CDS
TTGCGTGGACCTGTCGAACA+GGG 0.640836 3_2:-87849525 Msa0434830:three_prime_UTR
TTTCTTACCACAGAAGAGCA+CGG 0.661986 3_2:+87850604 Msa0434820:CDS
AGCCAAATCCTTAACCAGAG+TGG 0.662283 3_2:+87850532 Msa0434820:CDS
GTGTCTACAAACCTGCACCT+AGG 0.662807 3_2:-87849819 Msa0434830:intron
GAATACTGAATTGGATAGCG+TGG 0.687583 3_2:-87850756 Msa0434830:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTAATTCTTATTGT+TGG + chr3_2:87851078-87851097 Msa0434820:three_prime_UTR 10.0%
!!! TTTTAATTAATTCTTATTGT+TGG + chr3_2:87851078-87851097 Msa0434820:three_prime_UTR 10.0%
!! AATTATATGATGAAGAATAA+TGG + chr3_2:87851266-87851285 Msa0434820:three_prime_UTR 15.0%
!! AATTATATGATGAAGAATAA+TGG + chr3_2:87851266-87851285 Msa0434820:three_prime_UTR 15.0%
!!! TGCATGTTATTTATATATAG+AGG - chr3_2:87849378-87849397 Msa0434830:three_prime_UTR 20.0%
!!! GTCTTAAAAGGTTTTAAATA+CGG - chr3_2:87850069-87850088 Msa0434830:intron 20.0%
!! AAAAGATATCTTGTCTTAAA+AGG - chr3_2:87850081-87850100 Msa0434830:intron 20.0%
!! TATTCTATTCCTAGTTAATT+TGG + chr3_2:87850115-87850134 Msa0434820:intron 20.0%
!! ATTCTATTCCTAGTTAATTT+GGG + chr3_2:87850116-87850135 Msa0434820:intron 20.0%
!! GAAAAATTATTTCATCAAGA+AGG - chr3_2:87851241-87851260 Msa0434830:intron 20.0%
!!! GAAGAAAGTTACATTTTTTA+GGG - chr3_2:87851349-87851368 Msa0434830:intron 20.0%
!!! TGAAGAAAGTTACATTTTTT+AGG - chr3_2:87851350-87851369 Msa0434830:intron 20.0%
!!! TGCATGTTATTTATATATAG+AGG - chr3_2:87849378-87849397 Msa0434830:three_prime_UTR 20.0%
!!! GTCTTAAAAGGTTTTAAATA+CGG - chr3_2:87850069-87850088 Msa0434830:intron 20.0%
!! AAAAGATATCTTGTCTTAAA+AGG - chr3_2:87850081-87850100 Msa0434830:intron 20.0%
!! TATTCTATTCCTAGTTAATT+TGG + chr3_2:87850115-87850134 Msa0434820:intron 20.0%
!! ATTCTATTCCTAGTTAATTT+GGG + chr3_2:87850116-87850135 Msa0434820:intron 20.0%
!! GAAAAATTATTTCATCAAGA+AGG - chr3_2:87851241-87851260 Msa0434830:intron 20.0%
!!! GAAGAAAGTTACATTTTTTA+GGG - chr3_2:87851349-87851368 Msa0434830:intron 20.0%
!!! TGAAGAAAGTTACATTTTTT+AGG - chr3_2:87851350-87851369 Msa0434830:intron 20.0%
! TTGTGTGTTACACAAAATAA+GGG - chr3_2:87849426-87849445 Msa0434830:three_prime_UTR 25.0%
! ATTGTGTGTTACACAAAATA+AGG - chr3_2:87849427-87849446 Msa0434830:three_prime_UTR 25.0%
!! TAATTTGGGATGCAAATATT+TGG + chr3_2:87850130-87850149 Msa0434820:intron 25.0%
! GTAAAATTGGAATACTGAAT+TGG - chr3_2:87850768-87850787 Msa0434830:three_prime_UTR 25.0%
!! TATTCCAATTTTACAGTGAT+TGG + chr3_2:87850774-87850793 Msa0434820:CDS 25.0%
!!! ATAGTCTTTTTCAATACAAG+AGG + chr3_2:87851162-87851181 Msa0434820:three_prime_UTR 25.0%
!!! TAGTCTTTTTCAATACAAGA+GGG + chr3_2:87851163-87851182 Msa0434820:three_prime_UTR 25.0%
! AAATAAGGTTCGAATAACTT+AGG - chr3_2:87851215-87851234 Msa0434830:intron 25.0%
! TTGTGTGTTACACAAAATAA+GGG - chr3_2:87849426-87849445 Msa0434830:three_prime_UTR 25.0%
! ATTGTGTGTTACACAAAATA+AGG - chr3_2:87849427-87849446 Msa0434830:three_prime_UTR 25.0%
!! TAATTTGGGATGCAAATATT+TGG + chr3_2:87850130-87850149 Msa0434820:intron 25.0%
! GTAAAATTGGAATACTGAAT+TGG - chr3_2:87850768-87850787 Msa0434830:three_prime_UTR 25.0%
!! TATTCCAATTTTACAGTGAT+TGG + chr3_2:87850774-87850793 Msa0434820:CDS 25.0%
!!! ATAGTCTTTTTCAATACAAG+AGG + chr3_2:87851162-87851181 Msa0434820:three_prime_UTR 25.0%
!!! TAGTCTTTTTCAATACAAGA+GGG + chr3_2:87851163-87851182 Msa0434820:three_prime_UTR 25.0%
! AAATAAGGTTCGAATAACTT+AGG - chr3_2:87851215-87851234 Msa0434830:intron 25.0%
ATATATAGAGGAGCTTAAAG+AGG - chr3_2:87849366-87849385 Msa0434830:three_prime_UTR 30.0%
ACACAAAATAAGGGATTAAG+AGG - chr3_2:87849417-87849436 Msa0434830:three_prime_UTR 30.0%
ATCATGTCTGATCAAGTAAA+TGG + chr3_2:87849445-87849464 Msa0434820:exon 30.0%
! ACCAGAAAATTGAAGACTTT+TGG + chr3_2:87849999-87850018 Msa0434820:intron 30.0%
! CCAGAAAATTGAAGACTTTT+GGG + chr3_2:87850000-87850019 Msa0434820:intron 30.0%
! CAGAAAATTGAAGACTTTTG+GGG + chr3_2:87850001-87850020 Msa0434820:intron 30.0%
! AGAAAATTGAAGACTTTTGG+GGG + chr3_2:87850002-87850021 Msa0434820:intron 30.0%
!! AGTTTCTTGTGTGTTTTTGA+AGG - chr3_2:87850037-87850056 Msa0434830:intron 30.0%
ATTTGCATCCCAAATTAACT+AGG - chr3_2:87850127-87850146 Msa0434830:intron 30.0%
GATGCAAATATTTGGCAAAA+TGG + chr3_2:87850138-87850157 Msa0434820:intron 30.0%
ACAATTTAGTCGTGTCTAAA+AGG - chr3_2:87850164-87850183 Msa0434830:intron 30.0%
TAATGATTGTTTGGGAACTT+AGG - chr3_2:87850211-87850230 Msa0434830:intron 30.0%
! ATCATTAGACAGGACAATTT+TGG + chr3_2:87850224-87850243 Msa0434820:intron 30.0%
TTGTCAGTGATTATGATTAG+CGG - chr3_2:87850280-87850299 Msa0434830:intron 30.0%
ATTCTTGCAAAATTTGATGC+AGG + chr3_2:87850365-87850384 Msa0434820:intron 30.0%
!! ATATCGTTTGAGTTGCTTAA+AGG + chr3_2:87850403-87850422 Msa0434820:CDS 30.0%
CTGACATAAGAGAAAATGAT+TGG + chr3_2:87850558-87850577 Msa0434820:CDS 30.0%
CATAAGAGAAAATGATTGGA+TGG + chr3_2:87850562-87850581 Msa0434820:CDS 30.0%
CATGTAAAACTTTCACAGAT+TGG + chr3_2:87850830-87850849 Msa0434820:CDS 30.0%
! GATTTAATGGATCATTCAAG+AGG - chr3_2:87850877-87850896 Msa0434830:three_prime_UTR 30.0%
!! AGCTTGTTGAAGAGATTTAA+TGG - chr3_2:87850890-87850909 Msa0434830:three_prime_UTR 30.0%
TATTGGCAAAAAATGCTAGA+CGG + chr3_2:87851133-87851152 Msa0434820:three_prime_UTR 30.0%
!!! AGTCTTTTTCAATACAAGAG+GGG + chr3_2:87851164-87851183 Msa0434820:three_prime_UTR 30.0%
!!! AAAGGCTATTTCTAGCTTTT+TGG - chr3_2:87851190-87851209 Msa0434830:intron 30.0%
ATATATAGAGGAGCTTAAAG+AGG - chr3_2:87849366-87849385 Msa0434830:three_prime_UTR 30.0%
ACACAAAATAAGGGATTAAG+AGG - chr3_2:87849417-87849436 Msa0434830:three_prime_UTR 30.0%
ATCATGTCTGATCAAGTAAA+TGG + chr3_2:87849445-87849464 Msa0434820:exon 30.0%
! ACCAGAAAATTGAAGACTTT+TGG + chr3_2:87849999-87850018 Msa0434820:intron 30.0%
! CCAGAAAATTGAAGACTTTT+GGG + chr3_2:87850000-87850019 Msa0434820:intron 30.0%
! CAGAAAATTGAAGACTTTTG+GGG + chr3_2:87850001-87850020 Msa0434820:intron 30.0%
! AGAAAATTGAAGACTTTTGG+GGG + chr3_2:87850002-87850021 Msa0434820:intron 30.0%
!! AGTTTCTTGTGTGTTTTTGA+AGG - chr3_2:87850037-87850056 Msa0434830:intron 30.0%
ATTTGCATCCCAAATTAACT+AGG - chr3_2:87850127-87850146 Msa0434830:intron 30.0%
GATGCAAATATTTGGCAAAA+TGG + chr3_2:87850138-87850157 Msa0434820:intron 30.0%
ACAATTTAGTCGTGTCTAAA+AGG - chr3_2:87850164-87850183 Msa0434830:intron 30.0%
TAATGATTGTTTGGGAACTT+AGG - chr3_2:87850211-87850230 Msa0434830:intron 30.0%
! ATCATTAGACAGGACAATTT+TGG + chr3_2:87850224-87850243 Msa0434820:intron 30.0%
TTGTCAGTGATTATGATTAG+CGG - chr3_2:87850280-87850299 Msa0434830:intron 30.0%
ATTCTTGCAAAATTTGATGC+AGG + chr3_2:87850365-87850384 Msa0434820:intron 30.0%
!! ATATCGTTTGAGTTGCTTAA+AGG + chr3_2:87850403-87850422 Msa0434820:CDS 30.0%
CTGACATAAGAGAAAATGAT+TGG + chr3_2:87850558-87850577 Msa0434820:CDS 30.0%
CATAAGAGAAAATGATTGGA+TGG + chr3_2:87850562-87850581 Msa0434820:CDS 30.0%
CATGTAAAACTTTCACAGAT+TGG + chr3_2:87850830-87850849 Msa0434820:CDS 30.0%
! GATTTAATGGATCATTCAAG+AGG - chr3_2:87850877-87850896 Msa0434830:three_prime_UTR 30.0%
!! AGCTTGTTGAAGAGATTTAA+TGG - chr3_2:87850890-87850909 Msa0434830:three_prime_UTR 30.0%
TATTGGCAAAAAATGCTAGA+CGG + chr3_2:87851133-87851152 Msa0434820:three_prime_UTR 30.0%
!!! AGTCTTTTTCAATACAAGAG+GGG + chr3_2:87851164-87851183 Msa0434820:three_prime_UTR 30.0%
!!! AAAGGCTATTTCTAGCTTTT+TGG - chr3_2:87851190-87851209 Msa0434830:intron 30.0%
! ATTCCTTTTCAATTGTTGCG+TGG - chr3_2:87849543-87849562 Msa0434830:three_prime_UTR 35.0%
ACGCAACAATTGAAAAGGAA+TGG + chr3_2:87849542-87849561 Msa0434820:CDS 35.0%
CGCAACAATTGAAAAGGAAT+GGG + chr3_2:87849543-87849562 Msa0434820:CDS 35.0%
ATAGTTATCAGAAGCTAACG+CGG + chr3_2:87849945-87849964 Msa0434820:intron 35.0%
! CCCAAAAGTCTTCAATTTTC+TGG - chr3_2:87850003-87850022 Msa0434830:intron 35.0%
! TGTAACAGCACATTTTAGAC+AGG + chr3_2:87850181-87850200 Msa0434820:intron 35.0%
TTCCCAAACAATCATTAGAC+AGG + chr3_2:87850214-87850233 Msa0434820:intron 35.0%
GTCCTGTCTAATGATTGTTT+GGG - chr3_2:87850219-87850238 Msa0434830:intron 35.0%
TGTCCTGTCTAATGATTGTT+TGG - chr3_2:87850220-87850239 Msa0434830:intron 35.0%
!!! AGGACAATTTTGGAACCTTT+TGG + chr3_2:87850234-87850253 Msa0434820:intron 35.0%
TGCAAAATTTGATGCAGGAA+TGG + chr3_2:87850370-87850389 Msa0434820:intron 35.0%
ATGGAAAAGCTTCAAATTGC+AGG + chr3_2:87850581-87850600 Msa0434820:CDS 35.0%
TAAAATTCTCAGCAGTTGCA+TGG - chr3_2:87850675-87850694 Msa0434830:three_prime_UTR 35.0%
CAATTGTGTCTTAACTCACA+CGG + chr3_2:87850700-87850719 Msa0434820:CDS 35.0%
ACTTATTCATGAAGTCTGCT+AGG - chr3_2:87850730-87850749 Msa0434830:three_prime_UTR 35.0%
! ATAGATGGTAAAAGTTGGTC+TGG - chr3_2:87850800-87850819 Msa0434830:three_prime_UTR 35.0%
! GACCAACTTTTACCATCTAT+TGG + chr3_2:87850800-87850819 Msa0434820:CDS 35.0%
AGCCAATAGATGGTAAAAGT+TGG - chr3_2:87850805-87850824 Msa0434830:three_prime_UTR 35.0%
TTACAAACCAATCCAGATGA+CGG + chr3_2:87850929-87850948 Msa0434820:CDS 35.0%
ATTATGCGCAGAACTTTGAT+CGG - chr3_2:87850999-87851018 Msa0434830:intron 35.0%
TCAAAGTTCTGCGCATAATA+AGG + chr3_2:87851000-87851019 Msa0434820:CDS 35.0%
ATAATAAGGAGTCGGTCATT+CGG + chr3_2:87851014-87851033 Msa0434820:CDS 35.0%
CATGTTCTATTCTACGAATC+AGG - chr3_2:87851041-87851060 Msa0434830:intron 35.0%
! CTGATTCGTAGAATAGAACA+TGG + chr3_2:87851039-87851058 Msa0434820:exon 35.0%
CAATAGTGTAGCAATTGTAC+AGG - chr3_2:87851118-87851137 Msa0434830:intron 35.0%
CTGTACAATTGCTACACTAT+TGG + chr3_2:87851116-87851135 Msa0434820:three_prime_UTR 35.0%
ATTGGCAAAAAATGCTAGAC+GGG + chr3_2:87851134-87851153 Msa0434820:three_prime_UTR 35.0%
GTTCGAATAACTTAGGTCAA+AGG - chr3_2:87851208-87851227 Msa0434830:intron 35.0%
TCATCAAGAAGGCGAAAATA+AGG - chr3_2:87851230-87851249 Msa0434830:intron 35.0%
!! ACGTGTTTTTGAACTGGTTT+GGG - chr3_2:87851404-87851423 Msa0434830:intron 35.0%
! ATTCCTTTTCAATTGTTGCG+TGG - chr3_2:87849543-87849562 Msa0434830:three_prime_UTR 35.0%
ACGCAACAATTGAAAAGGAA+TGG + chr3_2:87849542-87849561 Msa0434820:CDS 35.0%
CGCAACAATTGAAAAGGAAT+GGG + chr3_2:87849543-87849562 Msa0434820:CDS 35.0%
ATAGTTATCAGAAGCTAACG+CGG + chr3_2:87849945-87849964 Msa0434820:intron 35.0%
! CCCAAAAGTCTTCAATTTTC+TGG - chr3_2:87850003-87850022 Msa0434830:intron 35.0%
! TGTAACAGCACATTTTAGAC+AGG + chr3_2:87850181-87850200 Msa0434820:intron 35.0%
TTCCCAAACAATCATTAGAC+AGG + chr3_2:87850214-87850233 Msa0434820:intron 35.0%
GTCCTGTCTAATGATTGTTT+GGG - chr3_2:87850219-87850238 Msa0434830:intron 35.0%
TGTCCTGTCTAATGATTGTT+TGG - chr3_2:87850220-87850239 Msa0434830:intron 35.0%
!!! AGGACAATTTTGGAACCTTT+TGG + chr3_2:87850234-87850253 Msa0434820:intron 35.0%
TGCAAAATTTGATGCAGGAA+TGG + chr3_2:87850370-87850389 Msa0434820:intron 35.0%
ATGGAAAAGCTTCAAATTGC+AGG + chr3_2:87850581-87850600 Msa0434820:CDS 35.0%
TAAAATTCTCAGCAGTTGCA+TGG - chr3_2:87850675-87850694 Msa0434830:three_prime_UTR 35.0%
CAATTGTGTCTTAACTCACA+CGG + chr3_2:87850700-87850719 Msa0434820:CDS 35.0%
ACTTATTCATGAAGTCTGCT+AGG - chr3_2:87850730-87850749 Msa0434830:three_prime_UTR 35.0%
! ATAGATGGTAAAAGTTGGTC+TGG - chr3_2:87850800-87850819 Msa0434830:three_prime_UTR 35.0%
! GACCAACTTTTACCATCTAT+TGG + chr3_2:87850800-87850819 Msa0434820:CDS 35.0%
AGCCAATAGATGGTAAAAGT+TGG - chr3_2:87850805-87850824 Msa0434830:three_prime_UTR 35.0%
TTACAAACCAATCCAGATGA+CGG + chr3_2:87850929-87850948 Msa0434820:CDS 35.0%
ATTATGCGCAGAACTTTGAT+CGG - chr3_2:87850999-87851018 Msa0434830:intron 35.0%
TCAAAGTTCTGCGCATAATA+AGG + chr3_2:87851000-87851019 Msa0434820:CDS 35.0%
ATAATAAGGAGTCGGTCATT+CGG + chr3_2:87851014-87851033 Msa0434820:CDS 35.0%
CATGTTCTATTCTACGAATC+AGG - chr3_2:87851041-87851060 Msa0434830:intron 35.0%
! CTGATTCGTAGAATAGAACA+TGG + chr3_2:87851039-87851058 Msa0434820:exon 35.0%
CAATAGTGTAGCAATTGTAC+AGG - chr3_2:87851118-87851137 Msa0434830:intron 35.0%
CTGTACAATTGCTACACTAT+TGG + chr3_2:87851116-87851135 Msa0434820:three_prime_UTR 35.0%
ATTGGCAAAAAATGCTAGAC+GGG + chr3_2:87851134-87851153 Msa0434820:three_prime_UTR 35.0%
GTTCGAATAACTTAGGTCAA+AGG - chr3_2:87851208-87851227 Msa0434830:intron 35.0%
TCATCAAGAAGGCGAAAATA+AGG - chr3_2:87851230-87851249 Msa0434830:intron 35.0%
!! ACGTGTTTTTGAACTGGTTT+GGG - chr3_2:87851404-87851423 Msa0434830:intron 35.0%
AGAGGAGCTTAAAGAGGTTT+GGG - chr3_2:87849360-87849379 Msa0434830:three_prime_UTR 40.0%
TAGAGGAGCTTAAAGAGGTT+TGG - chr3_2:87849361-87849380 Msa0434830:three_prime_UTR 40.0%
GGATTAAGAGGTTTGTGAAG+AGG - chr3_2:87849405-87849424 Msa0434830:three_prime_UTR 40.0%
CAGTATGTAACAAGTCTGGA+AGG - chr3_2:87849504-87849523 Msa0434830:three_prime_UTR 40.0%
AGGAATGGGATTTCCTTCAA+AGG + chr3_2:87849557-87849576 Msa0434820:CDS 40.0%
AACAATGCTCGTGAAACTTC+TGG + chr3_2:87849706-87849725 Msa0434820:CDS 40.0%
!! GCTTTGGTTTGATTCTAGAC+TGG + chr3_2:87849750-87849769 Msa0434820:CDS 40.0%
!!! TCTGGTCTACTGCTGTTTTT+GGG - chr3_2:87849985-87850004 Msa0434830:intron 40.0%
!!! TTCTGGTCTACTGCTGTTTT+TGG - chr3_2:87849986-87850005 Msa0434830:intron 40.0%
TGACTTTGCAGAAGTCTTAG+AGG + chr3_2:87850445-87850464 Msa0434820:CDS 40.0%
! TCTGGTTAAGGATTTGGCTT+TGG - chr3_2:87850531-87850550 Msa0434830:three_prime_UTR 40.0%
TTTCTTACCACAGAAGAGCA+CGG + chr3_2:87850604-87850623 Msa0434820:CDS 40.0%
GAATACTGAATTGGATAGCG+TGG - chr3_2:87850759-87850778 Msa0434830:three_prime_UTR 40.0%
CTGGCCAATCACTGTAAAAT+TGG - chr3_2:87850781-87850800 Msa0434830:three_prime_UTR 40.0%
ACATGTGTGAAGCCAATAGA+TGG - chr3_2:87850815-87850834 Msa0434830:three_prime_UTR 40.0%
ATCATTCAAGAGGCCGAAAT+GGG - chr3_2:87850867-87850886 Msa0434830:three_prime_UTR 40.0%
!! GGATTGGTTTGTAATGACCT+AGG - chr3_2:87850923-87850942 Msa0434830:three_prime_UTR 40.0%
TTATGCGCAGAACTTTGATC+GGG - chr3_2:87850998-87851017 Msa0434830:intron 40.0%
TTCTGCGCATAATAAGGAGT+CGG + chr3_2:87851006-87851025 Msa0434820:CDS 40.0%
ATTGTACAGGTGACAACACA+TGG - chr3_2:87851105-87851124 Msa0434830:intron 40.0%
TTGGCAAAAAATGCTAGACG+GGG + chr3_2:87851135-87851154 Msa0434820:three_prime_UTR 40.0%
!!! TGTTTTTGAACTGGTTTGGG+TGG - chr3_2:87851401-87851420 Msa0434830:intron 40.0%
!! GACGTGTTTTTGAACTGGTT+TGG - chr3_2:87851405-87851424 Msa0434830:intron 40.0%
!! GAGTAGACGTGTTTTTGAAC+TGG - chr3_2:87851410-87851429 Msa0434830:intron 40.0%
AGAGGAGCTTAAAGAGGTTT+GGG - chr3_2:87849360-87849379 Msa0434830:three_prime_UTR 40.0%
TAGAGGAGCTTAAAGAGGTT+TGG - chr3_2:87849361-87849380 Msa0434830:three_prime_UTR 40.0%
GGATTAAGAGGTTTGTGAAG+AGG - chr3_2:87849405-87849424 Msa0434830:three_prime_UTR 40.0%
CAGTATGTAACAAGTCTGGA+AGG - chr3_2:87849504-87849523 Msa0434830:three_prime_UTR 40.0%
AGGAATGGGATTTCCTTCAA+AGG + chr3_2:87849557-87849576 Msa0434820:CDS 40.0%
AACAATGCTCGTGAAACTTC+TGG + chr3_2:87849706-87849725 Msa0434820:CDS 40.0%
!! GCTTTGGTTTGATTCTAGAC+TGG + chr3_2:87849750-87849769 Msa0434820:CDS 40.0%
!!! TCTGGTCTACTGCTGTTTTT+GGG - chr3_2:87849985-87850004 Msa0434830:intron 40.0%
!!! TTCTGGTCTACTGCTGTTTT+TGG - chr3_2:87849986-87850005 Msa0434830:intron 40.0%
TGACTTTGCAGAAGTCTTAG+AGG + chr3_2:87850445-87850464 Msa0434820:CDS 40.0%
! TCTGGTTAAGGATTTGGCTT+TGG - chr3_2:87850531-87850550 Msa0434830:three_prime_UTR 40.0%
TTTCTTACCACAGAAGAGCA+CGG + chr3_2:87850604-87850623 Msa0434820:CDS 40.0%
GAATACTGAATTGGATAGCG+TGG - chr3_2:87850759-87850778 Msa0434830:three_prime_UTR 40.0%
CTGGCCAATCACTGTAAAAT+TGG - chr3_2:87850781-87850800 Msa0434830:three_prime_UTR 40.0%
ACATGTGTGAAGCCAATAGA+TGG - chr3_2:87850815-87850834 Msa0434830:three_prime_UTR 40.0%
ATCATTCAAGAGGCCGAAAT+GGG - chr3_2:87850867-87850886 Msa0434830:three_prime_UTR 40.0%
!! GGATTGGTTTGTAATGACCT+AGG - chr3_2:87850923-87850942 Msa0434830:three_prime_UTR 40.0%
TTATGCGCAGAACTTTGATC+GGG - chr3_2:87850998-87851017 Msa0434830:intron 40.0%
TTCTGCGCATAATAAGGAGT+CGG + chr3_2:87851006-87851025 Msa0434820:CDS 40.0%
ATTGTACAGGTGACAACACA+TGG - chr3_2:87851105-87851124 Msa0434830:intron 40.0%
TTGGCAAAAAATGCTAGACG+GGG + chr3_2:87851135-87851154 Msa0434820:three_prime_UTR 40.0%
!!! TGTTTTTGAACTGGTTTGGG+TGG - chr3_2:87851401-87851420 Msa0434830:intron 40.0%
!! GACGTGTTTTTGAACTGGTT+TGG - chr3_2:87851405-87851424 Msa0434830:intron 40.0%
!! GAGTAGACGTGTTTTTGAAC+TGG - chr3_2:87851410-87851429 Msa0434830:intron 40.0%
! GCTTAAAGAGGTTTGGGGTT+GGG - chr3_2:87849354-87849373 Msa0434830:three_prime_UTR 45.0%
! AGCTTAAAGAGGTTTGGGGT+TGG - chr3_2:87849355-87849374 Msa0434830:three_prime_UTR 45.0%
GAGGAGCTTAAAGAGGTTTG+GGG - chr3_2:87849359-87849378 Msa0434830:three_prime_UTR 45.0%
! AAGTCTGGAAGGTTTAGCTC+TGG - chr3_2:87849493-87849512 Msa0434830:three_prime_UTR 45.0%
GGGTCAGTATGTAACAAGTC+TGG - chr3_2:87849508-87849527 Msa0434830:three_prime_UTR 45.0%
GGTCCACGCAACAATTGAAA+AGG + chr3_2:87849537-87849556 Msa0434820:CDS 45.0%
TTTGGCAAGCTGACCTTTGA+AGG - chr3_2:87849573-87849592 Msa0434830:three_prime_UTR 45.0%
TCAAAGGTCAGCTTGCCAAA+CGG + chr3_2:87849573-87849592 Msa0434820:CDS 45.0%
TCCTTGCAGTTAGAACGCTT+TGG + chr3_2:87849734-87849753 Msa0434820:CDS 45.0%
! ACCAAAGCGTTCTAACTGCA+AGG - chr3_2:87849738-87849757 Msa0434830:three_prime_UTR 45.0%
TTATCAGAAGCTAACGCGGA+TGG + chr3_2:87849949-87849968 Msa0434820:intron 45.0%
! CAGACTGGCTGTAATCCAAA+AGG - chr3_2:87850252-87850271 Msa0434830:intron 45.0%
CAGTGATTATGATTAGCGGC+TGG - chr3_2:87850276-87850295 Msa0434830:intron 45.0%
AAAGGACAGCGATGTCTTTG+AGG + chr3_2:87850421-87850440 Msa0434820:CDS 45.0%
CACTATTCTGCAAGCAGCTA+AGG + chr3_2:87850475-87850494 Msa0434820:CDS 45.0%
AGCCAAATCCTTAACCAGAG+TGG + chr3_2:87850532-87850551 Msa0434820:CDS 45.0%
TGCCACTCTGGTTAAGGATT+TGG - chr3_2:87850537-87850556 Msa0434830:three_prime_UTR 45.0%
GATCATTCAAGAGGCCGAAA+TGG - chr3_2:87850868-87850887 Msa0434830:three_prime_UTR 45.0%
GTAATGACCTAGGCAAGTTG+CGG - chr3_2:87850913-87850932 Msa0434830:three_prime_UTR 45.0%
! TTGTACTTGGTGGAAGCTTC+TGG + chr3_2:87850968-87850987 Msa0434820:CDS 45.0%
! GCTTAAAGAGGTTTGGGGTT+GGG - chr3_2:87849354-87849373 Msa0434830:three_prime_UTR 45.0%
! AGCTTAAAGAGGTTTGGGGT+TGG - chr3_2:87849355-87849374 Msa0434830:three_prime_UTR 45.0%
GAGGAGCTTAAAGAGGTTTG+GGG - chr3_2:87849359-87849378 Msa0434830:three_prime_UTR 45.0%
! AAGTCTGGAAGGTTTAGCTC+TGG - chr3_2:87849493-87849512 Msa0434830:three_prime_UTR 45.0%
GGGTCAGTATGTAACAAGTC+TGG - chr3_2:87849508-87849527 Msa0434830:three_prime_UTR 45.0%
GGTCCACGCAACAATTGAAA+AGG + chr3_2:87849537-87849556 Msa0434820:CDS 45.0%
TTTGGCAAGCTGACCTTTGA+AGG - chr3_2:87849573-87849592 Msa0434830:three_prime_UTR 45.0%
TCAAAGGTCAGCTTGCCAAA+CGG + chr3_2:87849573-87849592 Msa0434820:CDS 45.0%
TCCTTGCAGTTAGAACGCTT+TGG + chr3_2:87849734-87849753 Msa0434820:CDS 45.0%
! ACCAAAGCGTTCTAACTGCA+AGG - chr3_2:87849738-87849757 Msa0434830:three_prime_UTR 45.0%
TTATCAGAAGCTAACGCGGA+TGG + chr3_2:87849949-87849968 Msa0434820:intron 45.0%
! CAGACTGGCTGTAATCCAAA+AGG - chr3_2:87850252-87850271 Msa0434830:intron 45.0%
CAGTGATTATGATTAGCGGC+TGG - chr3_2:87850276-87850295 Msa0434830:intron 45.0%
AAAGGACAGCGATGTCTTTG+AGG + chr3_2:87850421-87850440 Msa0434820:CDS 45.0%
CACTATTCTGCAAGCAGCTA+AGG + chr3_2:87850475-87850494 Msa0434820:CDS 45.0%
AGCCAAATCCTTAACCAGAG+TGG + chr3_2:87850532-87850551 Msa0434820:CDS 45.0%
TGCCACTCTGGTTAAGGATT+TGG - chr3_2:87850537-87850556 Msa0434830:three_prime_UTR 45.0%
GATCATTCAAGAGGCCGAAA+TGG - chr3_2:87850868-87850887 Msa0434830:three_prime_UTR 45.0%
GTAATGACCTAGGCAAGTTG+CGG - chr3_2:87850913-87850932 Msa0434830:three_prime_UTR 45.0%
! TTGTACTTGGTGGAAGCTTC+TGG + chr3_2:87850968-87850987 Msa0434820:CDS 45.0%
GCTTGCAAGACAACCAAGCA+TGG + chr3_2:87849467-87849486 Msa0434820:CDS 50.0%
ACATACTGACCCTGTTCGAC+AGG + chr3_2:87849516-87849535 Msa0434820:CDS 50.0%
GCAAAGCAGCAAGTGGATCA+TGG - chr3_2:87849630-87849649 Msa0434830:three_prime_UTR 50.0%
!! TGATCCACTTGCTGCTTTGC+TGG + chr3_2:87849630-87849649 Msa0434820:CDS 50.0%
GATGTTCTCAGTTCCCCGAA+TGG + chr3_2:87849775-87849794 Msa0434820:CDS 50.0%
ACCTGTGCTTCTCTGCCATT+CGG - chr3_2:87849793-87849812 Msa0434830:three_prime_UTR 50.0%
GAAGCACAGGTTGTTCTCCT+AGG + chr3_2:87849802-87849821 Msa0434820:CDS 50.0%
GTGTCTACAAACCTGCACCT+AGG - chr3_2:87849822-87849841 Msa0434830:intron 50.0%
TCTTATGTCAGCTGCCACTC+TGG - chr3_2:87850549-87850568 Msa0434830:three_prime_UTR 50.0%
AGCACGGTCTGGATTCTAGA+AGG + chr3_2:87850620-87850639 Msa0434820:CDS 50.0%
! TGGATTGGGCGAGGTAGTAT+AGG - chr3_2:87850649-87850668 Msa0434830:three_prime_UTR 50.0%
! CAGTTGCATGGCGTTGGATT+GGG - chr3_2:87850663-87850682 Msa0434830:three_prime_UTR 50.0%
TGGTGTTCCGTCATCTGGAT+TGG - chr3_2:87850939-87850958 Msa0434830:three_prime_UTR 50.0%
! ACCATGCTGTCGCTTGTACT+TGG + chr3_2:87850955-87850974 Msa0434820:CDS 50.0%
ACCAAGTACAAGCGACAGCA+TGG - chr3_2:87850959-87850978 Msa0434830:three_prime_UTR 50.0%
! ATGCTGTCGCTTGTACTTGG+TGG + chr3_2:87850958-87850977 Msa0434820:CDS 50.0%
GCTTGCAAGACAACCAAGCA+TGG + chr3_2:87849467-87849486 Msa0434820:CDS 50.0%
ACATACTGACCCTGTTCGAC+AGG + chr3_2:87849516-87849535 Msa0434820:CDS 50.0%
GCAAAGCAGCAAGTGGATCA+TGG - chr3_2:87849630-87849649 Msa0434830:three_prime_UTR 50.0%
!! TGATCCACTTGCTGCTTTGC+TGG + chr3_2:87849630-87849649 Msa0434820:CDS 50.0%
GATGTTCTCAGTTCCCCGAA+TGG + chr3_2:87849775-87849794 Msa0434820:CDS 50.0%
ACCTGTGCTTCTCTGCCATT+CGG - chr3_2:87849793-87849812 Msa0434830:three_prime_UTR 50.0%
GAAGCACAGGTTGTTCTCCT+AGG + chr3_2:87849802-87849821 Msa0434820:CDS 50.0%
GTGTCTACAAACCTGCACCT+AGG - chr3_2:87849822-87849841 Msa0434830:intron 50.0%
TCTTATGTCAGCTGCCACTC+TGG - chr3_2:87850549-87850568 Msa0434830:three_prime_UTR 50.0%
AGCACGGTCTGGATTCTAGA+AGG + chr3_2:87850620-87850639 Msa0434820:CDS 50.0%
! TGGATTGGGCGAGGTAGTAT+AGG - chr3_2:87850649-87850668 Msa0434830:three_prime_UTR 50.0%
! CAGTTGCATGGCGTTGGATT+GGG - chr3_2:87850663-87850682 Msa0434830:three_prime_UTR 50.0%
TGGTGTTCCGTCATCTGGAT+TGG - chr3_2:87850939-87850958 Msa0434830:three_prime_UTR 50.0%
! ACCATGCTGTCGCTTGTACT+TGG + chr3_2:87850955-87850974 Msa0434820:CDS 50.0%
ACCAAGTACAAGCGACAGCA+TGG - chr3_2:87850959-87850978 Msa0434830:three_prime_UTR 50.0%
! ATGCTGTCGCTTGTACTTGG+TGG + chr3_2:87850958-87850977 Msa0434820:CDS 50.0%
!! GGTTTAGCTCTGGCCATGCT+TGG - chr3_2:87849483-87849502 Msa0434830:three_prime_UTR 55.0%
TTGCGTGGACCTGTCGAACA+GGG - chr3_2:87849528-87849547 Msa0434830:three_prime_UTR 55.0%
TTGCCAAACGGCTGCAGGAA+GGG + chr3_2:87849585-87849604 Msa0434820:CDS 55.0%
!! CACTTGCTGCTTTGCTGGCA+GGG + chr3_2:87849635-87849654 Msa0434820:CDS 55.0%
!! ACTTGCTGCTTTGCTGGCAG+GGG + chr3_2:87849636-87849655 Msa0434820:CDS 55.0%
CTGTGCTTCTCTGCCATTCG+GGG - chr3_2:87849791-87849810 Msa0434830:three_prime_UTR 55.0%
CCTGTGCTTCTCTGCCATTC+GGG - chr3_2:87849792-87849811 Msa0434830:three_prime_UTR 55.0%
CAGGTTGTTCTCCTAGGTGC+AGG + chr3_2:87849808-87849827 Msa0434820:CDS 55.0%
! TGATTAGCGGCTGGTCAGAC+TGG - chr3_2:87850267-87850286 Msa0434830:intron 55.0%
GTCAGCTGCCACTCTGGTTA+AGG - chr3_2:87850543-87850562 Msa0434830:three_prime_UTR 55.0%
! TACCACAGAAGAGCACGGTC+TGG + chr3_2:87850609-87850628 Msa0434820:CDS 55.0%
ATCCAGACCGTGCTCTTCTG+TGG - chr3_2:87850614-87850633 Msa0434830:three_prime_UTR 55.0%
! GCAGTTGCATGGCGTTGGAT+TGG - chr3_2:87850664-87850683 Msa0434830:three_prime_UTR 55.0%
TCTCAGCAGTTGCATGGCGT+TGG - chr3_2:87850669-87850688 Msa0434830:three_prime_UTR 55.0%
GGAGACCCAGATGCCCATTT+CGG + chr3_2:87850851-87850870 Msa0434820:CDS 55.0%
AGAGGCCGAAATGGGCATCT+GGG - chr3_2:87850859-87850878 Msa0434830:three_prime_UTR 55.0%
AAGAGGCCGAAATGGGCATC+TGG - chr3_2:87850860-87850879 Msa0434830:three_prime_UTR 55.0%
ACAAGCTCCGCAACTTGCCT+AGG + chr3_2:87850903-87850922 Msa0434820:CDS 55.0%
CAGCATGGTGTTCCGTCATC+TGG - chr3_2:87850944-87850963 Msa0434830:three_prime_UTR 55.0%
!! GGTTTAGCTCTGGCCATGCT+TGG - chr3_2:87849483-87849502 Msa0434830:three_prime_UTR 55.0%
TTGCGTGGACCTGTCGAACA+GGG - chr3_2:87849528-87849547 Msa0434830:three_prime_UTR 55.0%
TTGCCAAACGGCTGCAGGAA+GGG + chr3_2:87849585-87849604 Msa0434820:CDS 55.0%
!! CACTTGCTGCTTTGCTGGCA+GGG + chr3_2:87849635-87849654 Msa0434820:CDS 55.0%
!! ACTTGCTGCTTTGCTGGCAG+GGG + chr3_2:87849636-87849655 Msa0434820:CDS 55.0%
CTGTGCTTCTCTGCCATTCG+GGG - chr3_2:87849791-87849810 Msa0434830:three_prime_UTR 55.0%
CCTGTGCTTCTCTGCCATTC+GGG - chr3_2:87849792-87849811 Msa0434830:three_prime_UTR 55.0%
CAGGTTGTTCTCCTAGGTGC+AGG + chr3_2:87849808-87849827 Msa0434820:CDS 55.0%
! TGATTAGCGGCTGGTCAGAC+TGG - chr3_2:87850267-87850286 Msa0434830:intron 55.0%
GTCAGCTGCCACTCTGGTTA+AGG - chr3_2:87850543-87850562 Msa0434830:three_prime_UTR 55.0%
! TACCACAGAAGAGCACGGTC+TGG + chr3_2:87850609-87850628 Msa0434820:CDS 55.0%
ATCCAGACCGTGCTCTTCTG+TGG - chr3_2:87850614-87850633 Msa0434830:three_prime_UTR 55.0%
! GCAGTTGCATGGCGTTGGAT+TGG - chr3_2:87850664-87850683 Msa0434830:three_prime_UTR 55.0%
TCTCAGCAGTTGCATGGCGT+TGG - chr3_2:87850669-87850688 Msa0434830:three_prime_UTR 55.0%
GGAGACCCAGATGCCCATTT+CGG + chr3_2:87850851-87850870 Msa0434820:CDS 55.0%
AGAGGCCGAAATGGGCATCT+GGG - chr3_2:87850859-87850878 Msa0434830:three_prime_UTR 55.0%
AAGAGGCCGAAATGGGCATC+TGG - chr3_2:87850860-87850879 Msa0434830:three_prime_UTR 55.0%
ACAAGCTCCGCAACTTGCCT+AGG + chr3_2:87850903-87850922 Msa0434820:CDS 55.0%
CAGCATGGTGTTCCGTCATC+TGG - chr3_2:87850944-87850963 Msa0434830:three_prime_UTR 55.0%
GTTGCGTGGACCTGTCGAAC+AGG - chr3_2:87849529-87849548 Msa0434830:three_prime_UTR 60.0%
TCAGCTTGCCAAACGGCTGC+AGG + chr3_2:87849580-87849599 Msa0434820:CDS 60.0%
CTTGCCAAACGGCTGCAGGA+AGG + chr3_2:87849584-87849603 Msa0434820:CDS 60.0%
TAGCCCTTCCTGCAGCCGTT+TGG - chr3_2:87849591-87849610 Msa0434830:three_prime_UTR 60.0%
CCTGCCAGCAAAGCAGCAAG+TGG - chr3_2:87849637-87849656 Msa0434830:three_prime_UTR 60.0%
!! CCACTTGCTGCTTTGCTGGC+AGG + chr3_2:87849634-87849653 Msa0434820:CDS 60.0%
! CCCGAATGGCAGAGAAGCAC+AGG + chr3_2:87849789-87849808 Msa0434820:CDS 60.0%
GTTGCGTGGACCTGTCGAAC+AGG - chr3_2:87849529-87849548 Msa0434830:three_prime_UTR 60.0%
TCAGCTTGCCAAACGGCTGC+AGG + chr3_2:87849580-87849599 Msa0434820:CDS 60.0%
CTTGCCAAACGGCTGCAGGA+AGG + chr3_2:87849584-87849603 Msa0434820:CDS 60.0%
TAGCCCTTCCTGCAGCCGTT+TGG - chr3_2:87849591-87849610 Msa0434830:three_prime_UTR 60.0%
CCTGCCAGCAAAGCAGCAAG+TGG - chr3_2:87849637-87849656 Msa0434830:three_prime_UTR 60.0%
!! CCACTTGCTGCTTTGCTGGC+AGG + chr3_2:87849634-87849653 Msa0434820:CDS 60.0%
! CCCGAATGGCAGAGAAGCAC+AGG + chr3_2:87849789-87849808 Msa0434820:CDS 60.0%
CGGCTGCAGGAAGGGCTATG+TGG + chr3_2:87849593-87849612 Msa0434820:CDS 65.0%
! GCATGGCGTTGGATTGGGCG+AGG - chr3_2:87850658-87850677 Msa0434830:three_prime_UTR 65.0%
CGGCTGCAGGAAGGGCTATG+TGG + chr3_2:87849593-87849612 Msa0434820:CDS 65.0%
! GCATGGCGTTGGATTGGGCG+AGG - chr3_2:87850658-87850677 Msa0434830:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87849351 87851443 87849351 ID=Msa0434820;Name=Msa0434820
chr3_2 mRNA 87849351 87851443 87849351 ID=Msa0434820-mRNA-1;Parent=Msa0434820;Name=Msa0434820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=97|1|1|1|1|1|2|401|345
chr3_2 exon 87849351 87849829 87849351 ID=Msa0434820-mRNA-1:exon:25640;Parent=Msa0434820-mRNA-1
chr3_2 exon 87850387 87851443 87850387 ID=Msa0434820-mRNA-1:exon:25641;Parent=Msa0434820-mRNA-1
chr3_2 five_prime_UTR 87849351 87849447 87849351 ID=Msa0434820-mRNA-1:five_prime_utr;Parent=Msa0434820-mRNA-1
chr3_2 CDS 87849448 87849829 87849448 ID=Msa0434820-mRNA-1:cds;Parent=Msa0434820-mRNA-1
chr3_2 CDS 87850387 87851042 87850387 ID=Msa0434820-mRNA-1:cds;Parent=Msa0434820-mRNA-1
chr3_2 three_prime_UTR 87851043 87851443 87851043 ID=Msa0434820-mRNA-1:three_prime_utr;Parent=Msa0434820-mRNA-1
Gene Sequence

>Msa0434820

ATGTCTGATCAAGTAAATGGCTTGCAAGACAACCAAGCATGGCCAGAGCTAAACCTTCCAGACTTGTTACATACTGACCCTGTTCGACAGGTCCACGCAACAATTGAAAAGGAATGGGATTTCCTTCAAAGGTCAGCTTGCCAAACGGCTGCAGGAAGGGCTATGTGGAAGCATGTGATCCATGATCCACTTGCTGCTTTGCTGGCAGGGGAGACTTATTTGAGAAATCTTCATGAAAAGATGAGAAAAGACTATCTCAACAATGCTCGTGAAACTTCTGGAGTGATCCTTGCAGTTAGAACGCTTTGGTTTGATTCTAGACTGGAAGATGTTCTCAGTTCCCCGAATGGCAGAGAAGCACAGGTTGTTCTCCTAGGTGCAGGAATGGATACAAGAGCATATCGTTTGAGTTGCTTAAAGGACAGCGATGTCTTTGAGGTTGACTTTGCAGAAGTCTTAGAGGTAAAAAGCACTATTCTGCAAGCAGCTAAGGAATCAACATACGAGTCACAACATATTATGTCCAAAGCCAAATCCTTAACCAGAGTGGCAGCTGACATAAGAGAAAATGATTGGATGGAAAAGCTTCAAATTGCAGGTTTCTTACCACAGAAGAGCACGGTCTGGATTCTAGAAGGTATCCTATACTACCTCGCCCAATCCAACGCCATGCAACTGCTGAGAATTTTAGCTAACAATTGTGTCTTAACTCACACGGTCATCCTAGCAGACTTCATGAATAAGTCATCAACCACGCTATCCAATTCAGTATTCCAATTTTACAGTGATTGGCCAGACCAACTTTTACCATCTATTGGCTTCACACATGTAAAACTTTCACAGATTGGAGACCCAGATGCCCATTTCGGCCTCTTGAATGATCCATTAAATCTCTTCAACAAGCTCCGCAACTTGCCTAGGTCATTACAAACCAATCCAGATGACGGAACACCATGCTGTCGCTTGTACTTGGTGGAAGCTTCTGGTTCACCCGATCAAAGTTCTGCGCATAATAAGGAGTCGGTCATTCGGTCCTGA

Protein sequence

>Msa0434820

MSDQVNGLQDNQAWPELNLPDLLHTDPVRQVHATIEKEWDFLQRSACQTAAGRAMWKHVIHDPLAALLAGETYLRNLHEKMRKDYLNNARETSGVILAVRTLWFDSRLEDVLSSPNGREAQVVLLGAGMDTRAYRLSCLKDSDVFEVDFAEVLEVKSTILQAAKESTYESQHIMSKAKSLTRVAADIRENDWMEKLQIAGFLPQKSTVWILEGILYYLAQSNAMQLLRILANNCVLTHTVILADFMNKSSTTLSNSVFQFYSDWPDQLLPSIGFTHVKLSQIGDPDAHFGLLNDPLNLFNKLRNLPRSLQTNPDDGTPCCRLYLVEASGSPDQSSAHNKESVIRS*