AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500490 MtrunA17_Chr3g0133961 92.511 227 13 3 1 225 1 225 9.12e-140 390
Msa0500490 MtrunA17_Chr3g0134241 47.287 129 68 0 94 222 73 201 4.14e-40 136
Msa0500490 MtrunA17_Chr8g0353071 40.351 114 68 0 107 220 1892 2005 3.22e-27 109
Msa0500490 MtrunA17_Chr5g0398111 45.122 82 42 2 121 202 1371 1449 1.06e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500490 AT1G45230.1 79.032 124 26 0 101 224 95 218 6.95e-74 223
Msa0500490 AT1G45230.2 78.226 124 27 0 101 224 95 218 2.21e-72 219
Msa0500490 AT3G46630.1 48.760 121 62 0 102 222 86 206 2.29e-39 135
Msa0500490 AT2G40030.1 38.333 120 74 0 101 220 1730 1849 3.54e-24 100

Find 53 sgRNAs with CRISPR-Local

Find 673 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTCAGTTATTATTTAT+TGG 0.121209 3_4:+40947368 None:intergenic
ACACCTAGAGCGATCAAAAT+TGG 0.221376 3_4:+40938652 None:intergenic
TTATTTATTGGACATTGTTT+TGG 0.272946 3_4:+40947380 None:intergenic
TGATTGGGAAGATCAGATTT+TGG 0.273498 3_4:-40947001 Msa0500490:CDS
TTCATATTGGAAATGCATAA+AGG 0.298841 3_4:-40938591 Msa0500490:CDS
GTTAGAACAATCCTTCATTC+TGG 0.300401 3_4:-40946952 Msa0500490:CDS
CGAGAAGAACGAAAAGAAAA+AGG 0.301719 3_4:+40947255 None:intergenic
ATGAAACTGTCTGCATATAA+TGG 0.319639 3_4:+40938548 None:intergenic
AGATATTGCCAATAATAAAA+TGG 0.338849 3_4:+40938271 None:intergenic
GTTTCATTCTCAGGCACTTC+AGG 0.339928 3_4:-40938532 Msa0500490:CDS
TGGCTAGTTTATCTTCTTGT+TGG 0.341526 3_4:-40947476 None:intergenic
TTCTACTTCCTCTTGTTGAT+AGG 0.367408 3_4:+40947059 None:intergenic
TCATATTGGAAATGCATAAA+GGG 0.369451 3_4:-40938590 Msa0500490:CDS
AACAAGATAAGTGGGTTGAT+TGG 0.378807 3_4:-40947017 Msa0500490:CDS
TTTGGAAGATACCGTTCCTT+TGG 0.390892 3_4:-40946983 Msa0500490:CDS
TCATGCACTAGATATGAAAA+TGG 0.400058 3_4:-40945520 Msa0500490:intron
TTCTGAGATTCAGGGTGAAA+TGG 0.410731 3_4:+40945448 None:intergenic
ATGCAGACAGTTTCATTCTC+AGG 0.415645 3_4:-40938541 Msa0500490:CDS
ACAAGATAAGTGGGTTGATT+GGG 0.433929 3_4:-40947016 Msa0500490:CDS
AAACAATTTGCAAGGGAAAC+CGG 0.437923 3_4:-40947130 Msa0500490:CDS
CCTTTACCTTGTGAAAGAAC+CGG 0.453291 3_4:+40947111 None:intergenic
CACCTAGAGCGATCAAAATT+GGG 0.460298 3_4:+40938653 None:intergenic
GAACTTACTGTCCAGAATGA+AGG 0.464362 3_4:+40946941 None:intergenic
AAGAAGAAGAAGCTACTTTG+AGG 0.474047 3_4:+40947163 None:intergenic
TTCTCAGGCACTTCAGGAAG+CGG 0.475135 3_4:-40938526 Msa0500490:CDS
AGAAGAAGAAGCTACTTTGA+GGG 0.491159 3_4:+40947164 None:intergenic
CCGGTTCTTTCACAAGGTAA+AGG 0.518771 3_4:-40947111 Msa0500490:CDS
GAAGCTCAAAACAATTTGCA+AGG 0.519975 3_4:-40947138 Msa0500490:CDS
GAAGATACCGTTCCTTTGGT+TGG 0.535584 3_4:-40946979 Msa0500490:CDS
GTACTGATGAACAAGATAAG+TGG 0.571949 3_4:-40947026 Msa0500490:CDS
ATGTTCATAGTGCGACAAGA+TGG 0.575213 3_4:-40938629 Msa0500490:CDS
TACTGATGAACAAGATAAGT+GGG 0.576952 3_4:-40947025 Msa0500490:CDS
TGGAAGGAGCTTCTCAACAA+TGG 0.580302 3_4:+40945468 None:intergenic
CTTTCTCAGTTATTGTTGCG+AGG 0.587883 3_4:+40947418 None:intergenic
GAGATTCAGGGTGAAATGGA+AGG 0.592660 3_4:+40945452 None:intergenic
AGTGCGACAAGATGGAGAGC+TGG 0.593516 3_4:-40938621 Msa0500490:CDS
CAGCTATTCCTATCAACAAG+AGG 0.600071 3_4:-40947067 Msa0500490:CDS
ACAAGGTAAAGGAGGAATTG+TGG 0.601286 3_4:-40947100 Msa0500490:CDS
AACAAAACCAACCAAAGGAA+CGG 0.611291 3_4:+40946972 None:intergenic
AAGCTCAAAACAATTTGCAA+GGG 0.616378 3_4:-40947137 Msa0500490:CDS
GGGAAACCGGTTCTTTCACA+AGG 0.622484 3_4:-40947117 Msa0500490:CDS
TAATGTTTGCAAAGATCGCG+AGG 0.627158 3_4:-40947453 Msa0500490:five_prime_UTR
TCTCAGTTATTGTTGCGAGG+TGG 0.631767 3_4:+40947421 None:intergenic
GTTCTAACAAAACCAACCAA+AGG 0.636609 3_4:+40946967 None:intergenic
GTTCTTTCACAAGGTAAAGG+AGG 0.643061 3_4:-40947108 Msa0500490:CDS
GGAGTAATTCGCAGCATCCG+CGG 0.650499 3_4:+40938292 None:intergenic
ATGTGGAATCGATTATATCA+CGG 0.652788 3_4:-40945416 Msa0500490:intron
TAGAGCGATCAAAATTGGGA+TGG 0.653406 3_4:+40938657 None:intergenic
AAAGCAAAATACTGAAGACA+TGG 0.661064 3_4:-40947331 Msa0500490:exon
AAACGAGAATGAAGCAACTG+TGG 0.672031 3_4:+40947195 None:intergenic
AATGTTTGCAAAGATCGCGA+GGG 0.692955 3_4:-40947452 Msa0500490:five_prime_UTR
AGGTAAAGGAGGAATTGTGG+AGG 0.732379 3_4:-40947097 Msa0500490:CDS
TAACAACTCACTAATCGCCG+CGG 0.750848 3_4:-40938309 Msa0500490:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTTTTTTTTTATTATCA+TGG - chr3_4:40938873-40938892 Msa0500490:intron 10.0%
!!! TTTTGATCTTTTAATATATA+AGG + chr3_4:40941794-40941813 None:intergenic 10.0%
!! TAATCTTAAGATATAATTTA+AGG + chr3_4:40943886-40943905 None:intergenic 10.0%
!! AATTATCCATATATAATTGA+GGG + chr3_4:40938842-40938861 None:intergenic 15.0%
!! AAATTATCCATATATAATTG+AGG + chr3_4:40938843-40938862 None:intergenic 15.0%
!!! TTTTTTATTATCATGGATTT+AGG - chr3_4:40938880-40938899 Msa0500490:intron 15.0%
!!! TGCAATAAAAATAATACTTT+TGG - chr3_4:40940439-40940458 Msa0500490:intron 15.0%
!!! GCAATAAAAATAATACTTTT+GGG - chr3_4:40940440-40940459 Msa0500490:intron 15.0%
!! TCAATTTAATATTAGATCAA+GGG + chr3_4:40940523-40940542 None:intergenic 15.0%
!! TTCAATTTAATATTAGATCA+AGG + chr3_4:40940524-40940543 None:intergenic 15.0%
!!! TTAATAAAAACTAACTCTTT+TGG + chr3_4:40940651-40940670 None:intergenic 15.0%
!!! TTTACAATTTTAACCTAATT+TGG - chr3_4:40940792-40940811 Msa0500490:intron 15.0%
!! AAAATAAATATAGAAGAGAT+AGG - chr3_4:40941346-40941365 Msa0500490:intron 15.0%
!! AATATACTCATTATTGATAT+AGG - chr3_4:40942575-40942594 Msa0500490:intron 15.0%
!! ATATACTCATTATTGATATA+GGG - chr3_4:40942576-40942595 Msa0500490:intron 15.0%
!!! AAGAATTTCAAATTTTTGTT+TGG + chr3_4:40943297-40943316 None:intergenic 15.0%
!! AATTCGGATATAAAAAAAAA+TGG + chr3_4:40943606-40943625 None:intergenic 15.0%
!! GTGAAAATAATGTTAAAAAA+AGG + chr3_4:40947313-40947332 None:intergenic 15.0%
!!! TTATTTATTGGACATTGTTT+TGG + chr3_4:40938372-40938391 None:intergenic 20.0%
!! CTAACTCAGTTATTATTTAT+TGG + chr3_4:40938384-40938403 None:intergenic 20.0%
!!! AAAAGAAAAAGGATTTTTGA+AGG + chr3_4:40938486-40938505 None:intergenic 20.0%
!! CAAAATCTTTCTCAATAAAT+TGG + chr3_4:40938995-40939014 None:intergenic 20.0%
!!! CAATTTATTGAGAAAGATTT+TGG - chr3_4:40938993-40939012 Msa0500490:intron 20.0%
!! TGACAAAGAGTTTAAATTTA+TGG + chr3_4:40939502-40939521 None:intergenic 20.0%
!!! AACCTTGTTAATTATTTTCA+TGG - chr3_4:40940149-40940168 Msa0500490:intron 20.0%
!! ATCCATGAAAATAATTAACA+AGG + chr3_4:40940154-40940173 None:intergenic 20.0%
!!! ATTTTTATTGCACTAAAAAC+AGG + chr3_4:40940431-40940450 None:intergenic 20.0%
!! TTATTAAAGATTAGCAAATC+AGG + chr3_4:40940832-40940851 None:intergenic 20.0%
!! AAAAAACCTATTTATACTAG+AGG + chr3_4:40940885-40940904 None:intergenic 20.0%
!! TACCTCAAATCTTAATTAAA+TGG + chr3_4:40940976-40940995 None:intergenic 20.0%
!! AGAAATGATTGTGATAATAT+TGG + chr3_4:40941455-40941474 None:intergenic 20.0%
!! AAACGATAACTTAGAAATAA+CGG + chr3_4:40941505-40941524 None:intergenic 20.0%
!! AATTGAGAAGAATAACAAAT+GGG + chr3_4:40942243-40942262 None:intergenic 20.0%
!! TAATTGAGAAGAATAACAAA+TGG + chr3_4:40942244-40942263 None:intergenic 20.0%
!!! ATAGATAATCTAAGATATCA+TGG + chr3_4:40943017-40943036 None:intergenic 20.0%
!!! TTATAAGGTTTTAGATAAGA+AGG + chr3_4:40943192-40943211 None:intergenic 20.0%
!! AAAACCTTATAACATCAAAA+TGG - chr3_4:40943200-40943219 Msa0500490:intron 20.0%
!! CAAACAAACAAAATTTAAGA+TGG + chr3_4:40943350-40943369 None:intergenic 20.0%
!!! TTTTTTTTATATCCGAATTG+TGG - chr3_4:40943607-40943626 Msa0500490:intron 20.0%
!! TATATTTCATAGTGAAGATT+GGG + chr3_4:40943699-40943718 None:intergenic 20.0%
!! ATATATTTCATAGTGAAGAT+TGG + chr3_4:40943700-40943719 None:intergenic 20.0%
!!! TTGATAATAACAACGAAATA+TGG + chr3_4:40943913-40943932 None:intergenic 20.0%
!!! TGGAGTTTTGTATATAATTA+AGG - chr3_4:40943960-40943979 Msa0500490:intron 20.0%
!!! GGAGTTTTGTATATAATTAA+GGG - chr3_4:40943961-40943980 Msa0500490:intron 20.0%
!! TTAATGTTGTTAAAGCTATA+GGG + chr3_4:40944089-40944108 None:intergenic 20.0%
!! ATTAATGTTGTTAAAGCTAT+AGG + chr3_4:40944090-40944109 None:intergenic 20.0%
!!! AGAAGTTTTTTTTTTTTGCA+AGG - chr3_4:40945143-40945162 Msa0500490:intron 20.0%
!! TTATTCTTAAAGTTTAGCAA+GGG + chr3_4:40945955-40945974 None:intergenic 20.0%
!! TTTATTCTTAAAGTTTAGCA+AGG + chr3_4:40945956-40945975 None:intergenic 20.0%
!!! CTTTAAGAATAAAACCTATT+TGG - chr3_4:40945963-40945982 Msa0500490:intron 20.0%
!!! GATAAATGCATTATGAATTT+TGG - chr3_4:40946216-40946235 Msa0500490:intron 20.0%
!! TCTAGTTATACTTATTCAAA+TGG - chr3_4:40946548-40946567 Msa0500490:intron 20.0%
!!! ATGATAATGCTGTAATAATT+AGG - chr3_4:40946594-40946613 Msa0500490:intron 20.0%
!!! TTTTTACAGAATATAGAACA+CGG + chr3_4:40946750-40946769 None:intergenic 20.0%
!! CAATAATAGTACAAGAAAAA+TGG + chr3_4:40947341-40947360 None:intergenic 20.0%
!!! GAATTACTCCATTTTATTAT+TGG - chr3_4:40947470-40947489 Msa0500490:five_prime_UTR 20.0%
! TGATGTTGAATTTATTCAGA+AGG - chr3_4:40938926-40938945 Msa0500490:intron 25.0%
!! TTTATTGAGAAAGATTTTGG+TGG - chr3_4:40938996-40939015 Msa0500490:intron 25.0%
! TTAGAATCAAACATACACTT+TGG + chr3_4:40939062-40939081 None:intergenic 25.0%
! GATAAACATTGAGTATGATT+TGG + chr3_4:40939225-40939244 None:intergenic 25.0%
! TTAAATCACCACTAAATTTG+AGG - chr3_4:40939299-40939318 Msa0500490:intron 25.0%
! TAAATCACCACTAAATTTGA+GGG - chr3_4:40939300-40939319 Msa0500490:intron 25.0%
!!! TTGGAAGTATCATTTAGTTA+GGG - chr3_4:40939461-40939480 Msa0500490:intron 25.0%
! AAATGTTAAAAGTCCCAAAT+TGG - chr3_4:40939615-40939634 Msa0500490:intron 25.0%
! CTGAAGAAATGTTTATAACT+GGG - chr3_4:40939650-40939669 Msa0500490:intron 25.0%
! TGAAGAAATGTTTATAACTG+GGG - chr3_4:40939651-40939670 Msa0500490:intron 25.0%
! TTATTGCATACATAAAACCA+TGG + chr3_4:40940030-40940049 None:intergenic 25.0%
!! TGTTCTGTTTTCATTTATCT+TGG - chr3_4:40940179-40940198 Msa0500490:intron 25.0%
! TGCATTATTCAATTGACAAA+AGG - chr3_4:40940390-40940409 Msa0500490:intron 25.0%
! AGGTTAAAATTGTAAACGAT+TGG + chr3_4:40940788-40940807 None:intergenic 25.0%
! CAAATCTTAATTAAATGGCA+AGG + chr3_4:40940971-40940990 None:intergenic 25.0%
!! TGCCATTTAATTAAGATTTG+AGG - chr3_4:40940971-40940990 Msa0500490:intron 25.0%
!!! AAATTAATTTTGGAAACCTG+CGG + chr3_4:40941125-40941144 None:intergenic 25.0%
!! CTGAGATGCTAAATTAATTT+TGG + chr3_4:40941135-40941154 None:intergenic 25.0%
!! GATCAATATTGATTGTTGAA+TGG + chr3_4:40941271-40941290 None:intergenic 25.0%
! TCAATATTGATCTAAGTGTA+TGG - chr3_4:40941279-40941298 Msa0500490:intron 25.0%
!!! TTGTTATCTTTTAAGGGATT+TGG + chr3_4:40941540-40941559 None:intergenic 25.0%
!!! TCGACTTTGTTATCTTTTAA+GGG + chr3_4:40941546-40941565 None:intergenic 25.0%
!!! ATCGACTTTGTTATCTTTTA+AGG + chr3_4:40941547-40941566 None:intergenic 25.0%
! TAAAAGATAACAAAGTCGAT+CGG - chr3_4:40941547-40941566 Msa0500490:intron 25.0%
!!! AAAGGAGAAGGAAATTTTTT+TGG + chr3_4:40942117-40942136 None:intergenic 25.0%
! AGGTTACATATCTTTATAAG+GGG + chr3_4:40942151-40942170 None:intergenic 25.0%
! GAGGTTACATATCTTTATAA+GGG + chr3_4:40942152-40942171 None:intergenic 25.0%
! ATTTATGAGTAACTTTCAGA+AGG + chr3_4:40942558-40942577 None:intergenic 25.0%
!!! AGGTGAATTATTTGTTTTAG+TGG + chr3_4:40942842-40942861 None:intergenic 25.0%
! TTCGCTATATAATAATGATG+TGG - chr3_4:40943079-40943098 Msa0500490:intron 25.0%
!!! AATGCCATTTTGATGTTATA+AGG + chr3_4:40943207-40943226 None:intergenic 25.0%
!!! TTTTGTTTGGCTTAAAACTT+TGG + chr3_4:40943284-40943303 None:intergenic 25.0%
!!! TTTTGCATTATTTTTGTCTC+AGG - chr3_4:40943540-40943559 Msa0500490:intron 25.0%
! ATTTCTGTTAAGCAAAAGTT+GGG + chr3_4:40943639-40943658 None:intergenic 25.0%
! AATTTCTGTTAAGCAAAAGT+TGG + chr3_4:40943640-40943659 None:intergenic 25.0%
!! ACTTTTGCTTAACAGAAATT+TGG - chr3_4:40943640-40943659 Msa0500490:intron 25.0%
!! ATTAGTTTCTCTGTTTAACT+AGG - chr3_4:40943934-40943953 Msa0500490:intron 25.0%
! TATACTACAATTTACAATGG+TGG + chr3_4:40944113-40944132 None:intergenic 25.0%
! GGTTATACTACAATTTACAA+TGG + chr3_4:40944116-40944135 None:intergenic 25.0%
!!! AAACTGGTTTGTAAGTTAAT+GGG + chr3_4:40944359-40944378 None:intergenic 25.0%
! AATTTCTACTTAACCTTTGA+AGG + chr3_4:40944541-40944560 None:intergenic 25.0%
!!! AGTTTTTTTTTTTTGCAAGG+TGG - chr3_4:40945146-40945165 Msa0500490:intron 25.0%
!! ACATAGGCATTACAAATTTT+CGG + chr3_4:40945326-40945345 None:intergenic 25.0%
!!! GTTTTTCAAAATTGACTTGT+GGG + chr3_4:40945410-40945429 None:intergenic 25.0%
!!! AGTTTTTCAAAATTGACTTG+TGG + chr3_4:40945411-40945430 None:intergenic 25.0%
! CAATAAAATTATGGATTCCT+TGG - chr3_4:40945564-40945583 Msa0500490:intron 25.0%
!! AGTGTATTTTGCAATTACTA+AGG + chr3_4:40946018-40946037 None:intergenic 25.0%
! TTTGAATGATTATCACATCA+CGG - chr3_4:40946252-40946271 Msa0500490:intron 25.0%
! TGCTGTAATAATTAGGTAAA+TGG - chr3_4:40946601-40946620 Msa0500490:intron 25.0%
! TCAAGATTAGAAAGCAAAAT+GGG + chr3_4:40946871-40946890 None:intergenic 25.0%
! TTCATATTGGAAATGCATAA+AGG - chr3_4:40947158-40947177 Msa0500490:CDS 25.0%
! TCATATTGGAAATGCATAAA+GGG - chr3_4:40947159-40947178 Msa0500490:CDS 25.0%
! ATAGTACAAGAAAAATGGAA+GGG + chr3_4:40947336-40947355 None:intergenic 25.0%
! AATAGTACAAGAAAAATGGA+AGG + chr3_4:40947337-40947356 None:intergenic 25.0%
AAAGCAAAATACTGAAGACA+TGG - chr3_4:40938418-40938437 Msa0500490:three_prime_UTR 30.0%
!! ATGCAGTAGTATTTTTGTGT+TGG + chr3_4:40938456-40938475 None:intergenic 30.0%
AAGCTCAAAACAATTTGCAA+GGG - chr3_4:40938612-40938631 Msa0500490:CDS 30.0%
TACTGATGAACAAGATAAGT+GGG - chr3_4:40938724-40938743 Msa0500490:intron 30.0%
ACCTAACCCTCAATTATATA+TGG - chr3_4:40938833-40938852 Msa0500490:intron 30.0%
TCCATATATAATTGAGGGTT+AGG + chr3_4:40938837-40938856 None:intergenic 30.0%
AAGGATTTAGATACTTCAAC+TGG - chr3_4:40938945-40938964 Msa0500490:intron 30.0%
!! GATCTTGAGTGAATTGATTT+TGG - chr3_4:40939094-40939113 Msa0500490:intron 30.0%
! TTTGGCTAAAAGTAAGTTGA+AGG - chr3_4:40939112-40939131 Msa0500490:intron 30.0%
TTAGTGGTGATTTAAGTGAT+TGG + chr3_4:40939294-40939313 None:intergenic 30.0%
! TCTGAAATCATATTTCACGA+AGG + chr3_4:40939366-40939385 None:intergenic 30.0%
GACATAGTATCTAAGAAAGT+TGG - chr3_4:40939442-40939461 Msa0500490:intron 30.0%
!! GTTGGAAGTATCATTTAGTT+AGG - chr3_4:40939460-40939479 Msa0500490:intron 30.0%
! TCACCTCTTGTATTTAAAAC+AGG - chr3_4:40939519-40939538 Msa0500490:intron 30.0%
!! CATCCTGTTTTAAATACAAG+AGG + chr3_4:40939525-40939544 None:intergenic 30.0%
CCAGTTATAAACATTTCTTC+AGG + chr3_4:40939652-40939671 None:intergenic 30.0%
CCTGAAGAAATGTTTATAAC+TGG - chr3_4:40939649-40939668 Msa0500490:intron 30.0%
GAAGAAATGTTTATAACTGG+GGG - chr3_4:40939652-40939671 Msa0500490:intron 30.0%
ATCTCTTAGAAATTGAGGTT+GGG + chr3_4:40939720-40939739 None:intergenic 30.0%
TACTCATCTCTTAGAAATTG+AGG + chr3_4:40939725-40939744 None:intergenic 30.0%
TTCTCTTAGAAATTGAGGTT+GGG + chr3_4:40939793-40939812 None:intergenic 30.0%
TACTCTTCTCTTAGAAATTG+AGG + chr3_4:40939798-40939817 None:intergenic 30.0%
TACTGATATGATGCTTGAAA+TGG - chr3_4:40939816-40939835 Msa0500490:intron 30.0%
TTTGCCATTCAATATTGCAA+AGG - chr3_4:40939899-40939918 Msa0500490:intron 30.0%
ACAACCTTTGCAATATTGAA+TGG + chr3_4:40939906-40939925 None:intergenic 30.0%
AATACCTGGGCAATATAAAA+TGG - chr3_4:40939930-40939949 Msa0500490:intron 30.0%
AATAATCAATGCAGTGAAGA+TGG - chr3_4:40940045-40940064 Msa0500490:intron 30.0%
ATAATCAATGCAGTGAAGAT+GGG - chr3_4:40940046-40940065 Msa0500490:intron 30.0%
CTAGTAAGTTATGTTGAGTT+TGG + chr3_4:40940082-40940101 None:intergenic 30.0%
TCATGCACTAGATATGAAAA+TGG - chr3_4:40940229-40940248 Msa0500490:intron 30.0%
!!! CAATCTTTTTCTGAGATTCA+GGG + chr3_4:40940312-40940331 None:intergenic 30.0%
ATGTGGAATCGATTATATCA+CGG - chr3_4:40940333-40940352 Msa0500490:intron 30.0%
!!! TTTTGGGTTTAGCAATCTAT+CGG - chr3_4:40940456-40940475 Msa0500490:intron 30.0%
! ATTGAAAATGCTTTGCTGTA+TGG - chr3_4:40940538-40940557 Msa0500490:intron 30.0%
TGGTCTTTCCAATAAATGAT+AGG - chr3_4:40940558-40940577 Msa0500490:intron 30.0%
AGGCAAATCCTATCATTTAT+TGG + chr3_4:40940569-40940588 None:intergenic 30.0%
TTGCACTTTAACCAGTTATT+GGG + chr3_4:40940605-40940624 None:intergenic 30.0%
TATGAGCCTCTAGTATAAAT+AGG - chr3_4:40940876-40940895 Msa0500490:intron 30.0%
!! AATTAATTTTGGAAACCTGC+GGG + chr3_4:40941124-40941143 None:intergenic 30.0%
ATTAATTTAGCATCTCAGTC+TGG - chr3_4:40941137-40941156 Msa0500490:intron 30.0%
ATGCTTTCAGATACTTAATC+AGG + chr3_4:40941596-40941615 None:intergenic 30.0%
CAAAGAGATTCAAGATGATT+TGG + chr3_4:40941722-40941741 None:intergenic 30.0%
!! ACATCATTTTGGGAGAATTT+TGG + chr3_4:40942006-40942025 None:intergenic 30.0%
GGAGGTTACATATCTTTATA+AGG + chr3_4:40942153-40942172 None:intergenic 30.0%
ATGAACTAGGTCACTTAAAA+AGG + chr3_4:40942174-40942193 None:intergenic 30.0%
AAAGGAAGAAAGAATGAACT+AGG + chr3_4:40942187-40942206 None:intergenic 30.0%
AGTCAAATAGTGTATTAGTG+TGG + chr3_4:40942371-40942390 None:intergenic 30.0%
CATTATTGATATAGGGACAT+TGG - chr3_4:40942583-40942602 Msa0500490:intron 30.0%
AGGAAAATAACGTGTATGAT+TGG + chr3_4:40942612-40942631 None:intergenic 30.0%
ATTTGCACAATCCTTTAACT+AGG + chr3_4:40942875-40942894 None:intergenic 30.0%
AATGACAAACAAGACAAAAC+TGG + chr3_4:40943578-40943597 None:intergenic 30.0%
!!! GTTTTGTCTTGTTTGTCATT+TGG - chr3_4:40943578-40943597 Msa0500490:intron 30.0%
TTTCTGTTAAGCAAAAGTTG+GGG + chr3_4:40943638-40943657 None:intergenic 30.0%
! CTCTTGTTCTAGATATGATT+TGG - chr3_4:40943669-40943688 Msa0500490:intron 30.0%
TTCTCTGTTTAACTAGGATT+TGG - chr3_4:40943940-40943959 Msa0500490:intron 30.0%
!!! TATAGGGTTTTAGATAAGGA+AGG + chr3_4:40944073-40944092 None:intergenic 30.0%
!!! AAGCTATAGGGTTTTAGATA+AGG + chr3_4:40944077-40944096 None:intergenic 30.0%
AGATTATTCTCATATAGTGG+AGG + chr3_4:40944225-40944244 None:intergenic 30.0%
GACAGATTATTCTCATATAG+TGG + chr3_4:40944228-40944247 None:intergenic 30.0%
TGAGAATAATCTGTCCAATA+AGG - chr3_4:40944233-40944252 Msa0500490:intron 30.0%
TAATCTGTCCAATAAGGTTT+AGG - chr3_4:40944239-40944258 Msa0500490:intron 30.0%
AGGATATTCCTAAACCTTAT+TGG + chr3_4:40944250-40944269 None:intergenic 30.0%
!! GAAACTGGTTTGTAAGTTAA+TGG + chr3_4:40944360-40944379 None:intergenic 30.0%
! GGAGGTTATTCACATTTTAT+GGG + chr3_4:40944586-40944605 None:intergenic 30.0%
ACTTTGCTGAAAAATGCTAT+AGG - chr3_4:40944710-40944729 Msa0500490:intron 30.0%
TAAGAACAGTAAAAGCCTTA+TGG + chr3_4:40944997-40945016 None:intergenic 30.0%
TCTCAATCACATCATATACA+AGG + chr3_4:40945071-40945090 None:intergenic 30.0%
! AGTGTTTTTCTTCAACATCT+TGG + chr3_4:40945214-40945233 None:intergenic 30.0%
AATTTGTAATGCCTATGTTG+AGG - chr3_4:40945328-40945347 Msa0500490:intron 30.0%
ATCCACTGGCAATAAAATTA+TGG - chr3_4:40945555-40945574 Msa0500490:intron 30.0%
! ATCCATAATTTTATTGCCAG+TGG + chr3_4:40945560-40945579 None:intergenic 30.0%
GGGATTATTAAAAACAATCC+TGG + chr3_4:40945603-40945622 None:intergenic 30.0%
!! TTTTAACTCTGTTCAACATG+AGG + chr3_4:40945656-40945675 None:intergenic 30.0%
ATGTCAATTCCTAACTATCA+TGG + chr3_4:40946196-40946215 None:intergenic 30.0%
AACTGAATTACTCAGATGTA+GGG + chr3_4:40946297-40946316 None:intergenic 30.0%
TAACTGAATTACTCAGATGT+AGG + chr3_4:40946298-40946317 None:intergenic 30.0%
AATCCTTAATCTCCATCTAA+TGG - chr3_4:40946330-40946349 Msa0500490:intron 30.0%
CTCAAGATTAGAAAGCAAAA+TGG + chr3_4:40946872-40946891 None:intergenic 30.0%
!! AGAACAGGTAGAATTTTAAC+GGG + chr3_4:40946970-40946989 None:intergenic 30.0%
! CAGAACAGGTAGAATTTTAA+CGG + chr3_4:40946971-40946990 None:intergenic 30.0%
ATGAAACTGTCTGCATATAA+TGG + chr3_4:40947204-40947223 None:intergenic 30.0%
TAGTACAAGAAAAATGGAAG+GGG + chr3_4:40947335-40947354 None:intergenic 30.0%
!! TAGCTAGCAGACTATTTTAA+AGG - chr3_4:40947365-40947384 Msa0500490:five_prime_UTR 30.0%
!!! ATTTTTGGAATTCAGAAGAG+TGG - chr3_4:40947409-40947428 Msa0500490:five_prime_UTR 30.0%
CGAGAAGAACGAAAAGAAAA+AGG + chr3_4:40938497-40938516 None:intergenic 35.0%
!!! GTTTTTGGAGTAGAAAGGAA+TGG + chr3_4:40938531-40938550 None:intergenic 35.0%
!!! GGTTTGTTTTTGGAGTAGAA+AGG + chr3_4:40938536-40938555 None:intergenic 35.0%
!!! AAGCAACTGTGGTTTGTTTT+TGG + chr3_4:40938546-40938565 None:intergenic 35.0%
! AGAAGAAGAAGCTACTTTGA+GGG + chr3_4:40938588-40938607 None:intergenic 35.0%
! AAGAAGAAGAAGCTACTTTG+AGG + chr3_4:40938589-40938608 None:intergenic 35.0%
GAAGCTCAAAACAATTTGCA+AGG - chr3_4:40938611-40938630 Msa0500490:CDS 35.0%
AAACAATTTGCAAGGGAAAC+CGG - chr3_4:40938619-40938638 Msa0500490:CDS 35.0%
TTCTACTTCCTCTTGTTGAT+AGG + chr3_4:40938693-40938712 None:intergenic 35.0%
! GTACTGATGAACAAGATAAG+TGG - chr3_4:40938723-40938742 Msa0500490:intron 35.0%
!! AACAAGATAAGTGGGTTGAT+TGG - chr3_4:40938732-40938751 Msa0500490:intron 35.0%
!! ACAAGATAAGTGGGTTGATT+GGG - chr3_4:40938733-40938752 Msa0500490:intron 35.0%
! TGATTGGGAAGATCAGATTT+TGG - chr3_4:40938748-40938767 Msa0500490:intron 35.0%
AACAAAACCAACCAAAGGAA+CGG + chr3_4:40938780-40938799 None:intergenic 35.0%
GTTCTAACAAAACCAACCAA+AGG + chr3_4:40938785-40938804 None:intergenic 35.0%
GTTAGAACAATCCTTCATTC+TGG - chr3_4:40938797-40938816 Msa0500490:intron 35.0%
!! GGTGTTGATTTCATGTTGAA+TGG - chr3_4:40938966-40938985 Msa0500490:intron 35.0%
ATACACTCATATGTTAGAGC+TGG + chr3_4:40939253-40939272 None:intergenic 35.0%
TTTACTGCCCTCAAATTTAG+TGG + chr3_4:40939310-40939329 None:intergenic 35.0%
CATCTCTTAGAAATTGAGGT+TGG + chr3_4:40939721-40939740 None:intergenic 35.0%
! CTTGAACAAATCCGTTTTGT+GGG - chr3_4:40939756-40939775 Msa0500490:intron 35.0%
! TTGAACAAATCCGTTTTGTG+GGG - chr3_4:40939757-40939776 Msa0500490:intron 35.0%
CTTCTCTTAGAAATTGAGGT+TGG + chr3_4:40939794-40939813 None:intergenic 35.0%
AAAGGTTGTATGCAATACCT+GGG - chr3_4:40939917-40939936 Msa0500490:intron 35.0%
ATACATAAAACCATGGACGA+CGG + chr3_4:40940023-40940042 None:intergenic 35.0%
!!! CCAATCTTTTTCTGAGATTC+AGG + chr3_4:40940313-40940332 None:intergenic 35.0%
CCTGAATCTCAGAAAAAGAT+TGG - chr3_4:40940310-40940329 Msa0500490:intron 35.0%
TCTCAGAAAAAGATTGGATG+TGG - chr3_4:40940316-40940335 Msa0500490:intron 35.0%
AAGGGTAAAATCCTTTCAGT+AGG + chr3_4:40940505-40940524 None:intergenic 35.0%
ATAGGATTTGCCTTCAAAAG+TGG - chr3_4:40940576-40940595 Msa0500490:intron 35.0%
TAGGATTTGCCTTCAAAAGT+GGG - chr3_4:40940577-40940596 Msa0500490:intron 35.0%
CTTGCACTTTAACCAGTTAT+TGG + chr3_4:40940606-40940625 None:intergenic 35.0%
AAGTGCAAGTTGTTAGCTAT+TGG - chr3_4:40940617-40940636 Msa0500490:intron 35.0%
! TCGCATGAGTTTTCATAAAC+TGG + chr3_4:40940699-40940718 None:intergenic 35.0%
ACTGTGCAAACTACCAAATT+AGG + chr3_4:40940808-40940827 None:intergenic 35.0%
TATTTGTTCCTCTGTATGCA+CGG - chr3_4:40940994-40941013 Msa0500490:intron 35.0%
ACCTATCATCCTGAATTTGA+TGG + chr3_4:40941163-40941182 None:intergenic 35.0%
TTTGTGTATATCATCTCCAC+AGG - chr3_4:40941226-40941245 Msa0500490:intron 35.0%
TTGTGTATATCATCTCCACA+GGG - chr3_4:40941227-40941246 Msa0500490:intron 35.0%
TAGAAATAACGGTATCGCTT+GGG + chr3_4:40941494-40941513 None:intergenic 35.0%
TTAGAAATAACGGTATCGCT+TGG + chr3_4:40941495-40941514 None:intergenic 35.0%
TTTCAGATACTTAATCAGGC+TGG + chr3_4:40941592-40941611 None:intergenic 35.0%
CATCTACTCTTGTAGTATTG+AGG + chr3_4:40941842-40941861 None:intergenic 35.0%
AAACACAAAGCAAGTGGTTT+AGG + chr3_4:40941967-40941986 None:intergenic 35.0%
! GCTTTGTGTTTCTCTAGAAA+TGG - chr3_4:40941976-40941995 Msa0500490:intron 35.0%
AACTAGGTCACTTAAAAAGG+AGG + chr3_4:40942171-40942190 None:intergenic 35.0%
CATTCTTTCTTCCTTTCTCT+CGG - chr3_4:40942191-40942210 Msa0500490:intron 35.0%
ATTCTTTCTTCCTTTCTCTC+GGG - chr3_4:40942192-40942211 Msa0500490:intron 35.0%
TGTGACACTTTGTAGTGTAA+TGG + chr3_4:40942322-40942341 None:intergenic 35.0%
ACGGTTAGATGAAATAAGGA+AGG + chr3_4:40942345-40942364 None:intergenic 35.0%
GTCAACGGTTAGATGAAATA+AGG + chr3_4:40942349-40942368 None:intergenic 35.0%
TAGTGTATTAGTGTGGTCAA+CGG + chr3_4:40942364-40942383 None:intergenic 35.0%
!! ACACGTTATTTTCCTAGCAA+AGG - chr3_4:40942617-40942636 Msa0500490:intron 35.0%
!! AACATTTGCTATCTGCATAC+AGG + chr3_4:40942652-40942671 None:intergenic 35.0%
TGCAGATAGCAAATGTTAGA+TGG - chr3_4:40942655-40942674 Msa0500490:intron 35.0%
GAAATAATGCAACTATGGGA+AGG + chr3_4:40942772-40942791 None:intergenic 35.0%
TCCCATAGTTGCATTATTTC+TGG - chr3_4:40942772-40942791 Msa0500490:intron 35.0%
CCCAGAAATAATGCAACTAT+GGG + chr3_4:40942776-40942795 None:intergenic 35.0%
! CCCATAGTTGCATTATTTCT+GGG - chr3_4:40942773-40942792 Msa0500490:intron 35.0%
!! CCATAGTTGCATTATTTCTG+GGG - chr3_4:40942774-40942793 Msa0500490:intron 35.0%
!! ATTTTCTAGTGGAGCAACTA+TGG + chr3_4:40942808-40942827 None:intergenic 35.0%
TTTAACTAGGTCGGAACAAA+AGG + chr3_4:40942862-40942881 None:intergenic 35.0%
! TTTTGTTCCGACCTAGTTAA+AGG - chr3_4:40942861-40942880 Msa0500490:intron 35.0%
TACAACCATTAGATTAGCAC+TGG - chr3_4:40942988-40943007 Msa0500490:intron 35.0%
CTAAACACGCTAGAAAGATA+GGG + chr3_4:40943383-40943402 None:intergenic 35.0%
TCTAAACACGCTAGAAAGAT+AGG + chr3_4:40943384-40943403 None:intergenic 35.0%
AAAGTGATTCTGAACACAGT+AGG + chr3_4:40943431-40943450 None:intergenic 35.0%
TTTATATCCGAATTGTGGTC+TGG - chr3_4:40943612-40943631 Msa0500490:intron 35.0%
GCTTAACAGAAATTTGGTCT+CGG - chr3_4:40943646-40943665 Msa0500490:intron 35.0%
TTTCATAGTGAAGATTGGGA+AGG + chr3_4:40943695-40943714 None:intergenic 35.0%
! AACATAGTTTGGAGCAGAAT+AGG + chr3_4:40944137-40944156 None:intergenic 35.0%
TATTCTGCTCCAAACTATGT+TGG - chr3_4:40944136-40944155 Msa0500490:intron 35.0%
TACTCATCTCCAACATAGTT+TGG + chr3_4:40944148-40944167 None:intergenic 35.0%
CTATGTTGGAGATGAGTATT+AGG - chr3_4:40944150-40944169 Msa0500490:intron 35.0%
AGATTTGAAAAGGATCATCG+AGG + chr3_4:40944186-40944205 None:intergenic 35.0%
! CGATGATCCTTTTCAAATCT+AGG - chr3_4:40944186-40944205 Msa0500490:intron 35.0%
AGGTAGACCTAGATTTGAAA+AGG + chr3_4:40944196-40944215 None:intergenic 35.0%
!! GGTTGATTCTTTGTTTCTGA+GGG + chr3_4:40944294-40944313 None:intergenic 35.0%
!! TGGTTGATTCTTTGTTTCTG+AGG + chr3_4:40944295-40944314 None:intergenic 35.0%
GGTTGGCAATTCTAATAAGA+TGG + chr3_4:40944315-40944334 None:intergenic 35.0%
TCTTATTAGAATTGCCAACC+TGG - chr3_4:40944315-40944334 Msa0500490:intron 35.0%
ACAAACCAGTTTCTCTGATT+TGG - chr3_4:40944367-40944386 Msa0500490:intron 35.0%
AAATGCCAATTAAGTACCTG+TGG - chr3_4:40944504-40944523 Msa0500490:intron 35.0%
AATGCCAATTAAGTACCTGT+GGG - chr3_4:40944505-40944524 Msa0500490:intron 35.0%
! AGAAATTTGAGACTTTGCTG+AGG - chr3_4:40944554-40944573 Msa0500490:intron 35.0%
! GGGAGGTTATTCACATTTTA+TGG + chr3_4:40944587-40944606 None:intergenic 35.0%
TGCTGTATTGCCTTTACTAA+GGG - chr3_4:40944626-40944645 Msa0500490:intron 35.0%
! AGAGTTGATTCCCTTAGTAA+AGG + chr3_4:40944639-40944658 None:intergenic 35.0%
AAATTTAGCATAGCCAACAC+CGG - chr3_4:40944814-40944833 Msa0500490:intron 35.0%
!! AACATGCTTTTGAGTACACT+GGG + chr3_4:40944888-40944907 None:intergenic 35.0%
!! AAACATGCTTTTGAGTACAC+TGG + chr3_4:40944889-40944908 None:intergenic 35.0%
TCTTGACATGCTAATATCAG+CGG + chr3_4:40944963-40944982 None:intergenic 35.0%
AAGACCAATAATCCACCATA+AGG - chr3_4:40944979-40944998 Msa0500490:intron 35.0%
!! AAAGCCTTATGGTGGATTAT+TGG + chr3_4:40944986-40945005 None:intergenic 35.0%
AGATTGGAGTTCACTTTACA+TGG - chr3_4:40945029-40945048 Msa0500490:intron 35.0%
GATTGGAGTTCACTTTACAT+GGG - chr3_4:40945030-40945049 Msa0500490:intron 35.0%
AATCACATCATATACAAGGC+GGG + chr3_4:40945067-40945086 None:intergenic 35.0%
CAATCACATCATATACAAGG+CGG + chr3_4:40945068-40945087 None:intergenic 35.0%
! TCTACAATCTGTAAAAGTGC+TGG + chr3_4:40945126-40945145 None:intergenic 35.0%
TTCTTCAACATCTTGGTATG+TGG + chr3_4:40945207-40945226 None:intergenic 35.0%
ATTCACAGCACATTGAAATG+TGG - chr3_4:40945270-40945289 Msa0500490:intron 35.0%
TCAAATATGGATGCATGAGA+AGG + chr3_4:40945377-40945396 None:intergenic 35.0%
TCTCATGCATCCATATTTGA+TGG - chr3_4:40945377-40945396 Msa0500490:intron 35.0%
AACAGGTAAAACAAATCCAC+TGG - chr3_4:40945541-40945560 Msa0500490:intron 35.0%
TAATAATCCCTTGACCTTCA+TGG - chr3_4:40945613-40945632 Msa0500490:intron 35.0%
AGAGTTAAAACTCCACCAAA+TGG - chr3_4:40945666-40945685 Msa0500490:intron 35.0%
AATGACCGTATTTCAACCTA+AGG - chr3_4:40945841-40945860 Msa0500490:intron 35.0%
AGTGGGAAAACTATCCAAAT+AGG + chr3_4:40945980-40945999 None:intergenic 35.0%
ATACACTTTGCATGTTGCTA+AGG - chr3_4:40946031-40946050 Msa0500490:intron 35.0%
GAAAACCTATCTATAGCAGA+GGG + chr3_4:40946072-40946091 None:intergenic 35.0%
AGAAAACCTATCTATAGCAG+AGG + chr3_4:40946073-40946092 None:intergenic 35.0%
! TGCTATAGATAGGTTTTCTC+AGG - chr3_4:40946074-40946093 Msa0500490:intron 35.0%
ATGAATCAAACTGCTAGAGA+AGG + chr3_4:40946129-40946148 None:intergenic 35.0%
TCGAGCAAAGTAGTTGAATT+TGG + chr3_4:40946160-40946179 None:intergenic 35.0%
ACTATCATGGAATGAGAAGA+AGG + chr3_4:40946183-40946202 None:intergenic 35.0%
CTTCTCATTCCATGATAGTT+AGG - chr3_4:40946184-40946203 Msa0500490:intron 35.0%
TAGCCATTAGATGGAGATTA+AGG + chr3_4:40946336-40946355 None:intergenic 35.0%
CGAAATATGTAGCCATTAGA+TGG + chr3_4:40946345-40946364 None:intergenic 35.0%
! AAATGTCTGTGCTTTTACTG+GGG + chr3_4:40946456-40946475 None:intergenic 35.0%
! GAAATGTCTGTGCTTTTACT+GGG + chr3_4:40946457-40946476 None:intergenic 35.0%
! TGAAATGTCTGTGCTTTTAC+TGG + chr3_4:40946458-40946477 None:intergenic 35.0%
GCACAGACATTTCAAAATAG+TGG - chr3_4:40946464-40946483 Msa0500490:intron 35.0%
ATATAGAACACGGAACTACT+GGG + chr3_4:40946740-40946759 None:intergenic 35.0%
AATATAGAACACGGAACTAC+TGG + chr3_4:40946741-40946760 None:intergenic 35.0%
CAAATTAGAGTTAGAAAGCG+TGG + chr3_4:40946798-40946817 None:intergenic 35.0%
! TTCTAACTCTAATTTGCAGC+TGG - chr3_4:40946802-40946821 Msa0500490:intron 35.0%
GTAAGACACTTCCTTAAGTA+AGG + chr3_4:40946849-40946868 None:intergenic 35.0%
CGTTAAAATTCTACCTGTTC+TGG - chr3_4:40946969-40946988 Msa0500490:CDS 35.0%
!!! TACCTGTTCTGGTTTTTCTT+CGG - chr3_4:40946980-40946999 Msa0500490:CDS 35.0%
! TCGGGGTAATTATTTTCTTC+AGG - chr3_4:40946999-40947018 Msa0500490:CDS 35.0%
! CGGGGTAATTATTTTCTTCA+GGG - chr3_4:40947000-40947019 Msa0500490:CDS 35.0%
! AGCTGGTAGACTTTTCATAT+TGG - chr3_4:40947145-40947164 Msa0500490:CDS 35.0%
TAATGTTTGCAAAGATCGCG+AGG - chr3_4:40938296-40938315 Msa0500490:three_prime_UTR 40.0%
AATGTTTGCAAAGATCGCGA+GGG - chr3_4:40938297-40938316 Msa0500490:three_prime_UTR 40.0%
CTTTCTCAGTTATTGTTGCG+AGG + chr3_4:40938334-40938353 None:intergenic 40.0%
AAACGAGAATGAAGCAACTG+TGG + chr3_4:40938557-40938576 None:intergenic 40.0%
CCTTTACCTTGTGAAAGAAC+CGG + chr3_4:40938641-40938660 None:intergenic 40.0%
GTTCTTTCACAAGGTAAAGG+AGG - chr3_4:40938641-40938660 Msa0500490:CDS 40.0%
ACAAGGTAAAGGAGGAATTG+TGG - chr3_4:40938649-40938668 Msa0500490:CDS 40.0%
CAGCTATTCCTATCAACAAG+AGG - chr3_4:40938682-40938701 Msa0500490:intron 40.0%
TTTGGAAGATACCGTTCCTT+TGG - chr3_4:40938766-40938785 Msa0500490:intron 40.0%
GAACTTACTGTCCAGAATGA+AGG + chr3_4:40938811-40938830 None:intergenic 40.0%
ATTTCACGAAGGAAGCAACA+TGG + chr3_4:40939355-40939374 None:intergenic 40.0%
TGTATGCACTATGCGGTTAT+GGG + chr3_4:40939563-40939582 None:intergenic 40.0%
GGTCATCTCTCATCCAATTT+GGG + chr3_4:40939631-40939650 None:intergenic 40.0%
AGGTCATCTCTCATCCAATT+TGG + chr3_4:40939632-40939651 None:intergenic 40.0%
! GCTTGAACAAATCCGTTTTG+TGG - chr3_4:40939755-40939774 Msa0500490:intron 40.0%
! GCAAAAGAAACTGACTCATC+TGG + chr3_4:40939884-40939903 None:intergenic 40.0%
CAAAGGTTGTATGCAATACC+TGG - chr3_4:40939916-40939935 Msa0500490:intron 40.0%
TGGGCAATATAAAATGGCTG+CGG - chr3_4:40939936-40939955 Msa0500490:intron 40.0%
TAGTGCATGAAATCACAACG+AGG + chr3_4:40940219-40940238 None:intergenic 40.0%
!! TTCTGAGATTCAGGGTGAAA+TGG + chr3_4:40940304-40940323 None:intergenic 40.0%
GCAATCTATCGGATTAAGCA+CGG - chr3_4:40940467-40940486 Msa0500490:intron 40.0%
AGGATTTGCCTTCAAAAGTG+GGG - chr3_4:40940578-40940597 Msa0500490:intron 40.0%
! GCATTTTGTTAAGTGTGGAG+TGG + chr3_4:40940745-40940764 None:intergenic 40.0%
!! ATTGGTATCCTCTAGAGTGT+GGG + chr3_4:40940770-40940789 None:intergenic 40.0%
AGGGATAGGCTACATAGAAA+GGG + chr3_4:40940941-40940960 None:intergenic 40.0%
TAAATGGCAAGGAAACCTGA+GGG + chr3_4:40940960-40940979 None:intergenic 40.0%
TTAAATGGCAAGGAAACCTG+AGG + chr3_4:40940961-40940980 None:intergenic 40.0%
ACTATCATCCATCCCAATAG+CGG - chr3_4:40941057-40941076 Msa0500490:intron 40.0%
GCCATCAAATTCAGGATGAT+AGG - chr3_4:40941159-40941178 Msa0500490:intron 40.0%
GAAATTGCAGTTGTTACGCT+TGG + chr3_4:40941402-40941421 None:intergenic 40.0%
ATACTTAATCAGGCTGGACA+CGG + chr3_4:40941586-40941605 None:intergenic 40.0%
GATTCAACTCAAGATCGCTT+TGG + chr3_4:40941940-40941959 None:intergenic 40.0%
CTAGAGAAACACAAAGCAAG+TGG + chr3_4:40941973-40941992 None:intergenic 40.0%
! GAGAGCAAAACCACGTTTTA+GGG + chr3_4:40942081-40942100 None:intergenic 40.0%
! AGAGAGCAAAACCACGTTTT+AGG + chr3_4:40942082-40942101 None:intergenic 40.0%
! ACCAATGTCCAATGGGTTTA+AGG - chr3_4:40942217-40942236 Msa0500490:intron 40.0%
GAGTAACTTTCAGAAGGAGT+CGG + chr3_4:40942552-40942571 None:intergenic 40.0%
TATCTACACGACCACTAAGA+TGG - chr3_4:40942705-40942724 Msa0500490:intron 40.0%
CCCCAGAAATAATGCAACTA+TGG + chr3_4:40942777-40942796 None:intergenic 40.0%
!! TTGCATTATTTCTGGGGAAG+AGG - chr3_4:40942780-40942799 Msa0500490:intron 40.0%
AGTTGCTCCACTAGAAAATG+TGG - chr3_4:40942809-40942828 Msa0500490:intron 40.0%
! CATCTTGCCACATTTTCTAG+TGG + chr3_4:40942819-40942838 None:intergenic 40.0%
GCACAATCCTTTAACTAGGT+CGG + chr3_4:40942871-40942890 None:intergenic 40.0%
ATAAGTGTGACTGAATCCTG+AGG - chr3_4:40942900-40942919 Msa0500490:intron 40.0%
TAAGTGTGACTGAATCCTGA+GGG - chr3_4:40942901-40942920 Msa0500490:intron 40.0%
TCTACGAGTTTCATCCAACT+TGG + chr3_4:40942936-40942955 None:intergenic 40.0%
GAAACAAGATGGCTCACAAA+GGG + chr3_4:40943242-40943261 None:intergenic 40.0%
AGAAACAAGATGGCTCACAA+AGG + chr3_4:40943243-40943262 None:intergenic 40.0%
GCAGCACAATAGAAACAAGA+TGG + chr3_4:40943253-40943272 None:intergenic 40.0%
TTCTGAACACAGTAGGAAGA+TGG + chr3_4:40943424-40943443 None:intergenic 40.0%
! TTTTTGTCTCAGGTGCAGTT+TGG - chr3_4:40943550-40943569 Msa0500490:intron 40.0%
GTCTGTAACAAGCTTAAGTG+TGG - chr3_4:40943751-40943770 Msa0500490:intron 40.0%
AAAGGATCATCGAGGATCTA+AGG + chr3_4:40944178-40944197 None:intergenic 40.0%
! TCATATAGTGGAGGAAGTCA+AGG + chr3_4:40944216-40944235 None:intergenic 40.0%
AAGGTTTAGGAATATCCTGC+AGG - chr3_4:40944252-40944271 Msa0500490:intron 40.0%
! GTTTCTGAGGGATGACAAAT+AGG + chr3_4:40944282-40944301 None:intergenic 40.0%
CTACACCAAATCAGAGAAAC+TGG + chr3_4:40944375-40944394 None:intergenic 40.0%
GAAACGGAAGAATGATCCTT+GGG + chr3_4:40944442-40944461 None:intergenic 40.0%
TGAAACGGAAGAATGATCCT+TGG + chr3_4:40944443-40944462 None:intergenic 40.0%
CATTCTTCCGTTTCACCATA+AGG - chr3_4:40944448-40944467 Msa0500490:intron 40.0%
CAGATCACCTTATGGTGAAA+CGG + chr3_4:40944458-40944477 None:intergenic 40.0%
GAGTGGCTTCAATTCAATGA+AGG - chr3_4:40944480-40944499 Msa0500490:intron 40.0%
TAGTAAAGGCAATACAGCAC+TGG + chr3_4:40944625-40944644 None:intergenic 40.0%
GTGCTGTATTGCCTTTACTA+AGG - chr3_4:40944625-40944644 Msa0500490:intron 40.0%
TTGGAGTTATTGCACAAGGT+AGG + chr3_4:40944739-40944758 None:intergenic 40.0%
GTCATTGGAGTTATTGCACA+AGG + chr3_4:40944743-40944762 None:intergenic 40.0%
! GGTAGCAGAAACGACATTTT+AGG + chr3_4:40944866-40944885 None:intergenic 40.0%
!! ACATGCTTTTGAGTACACTG+GGG + chr3_4:40944887-40944906 None:intergenic 40.0%
TTCTTCGACAATCATGTCAC+AGG - chr3_4:40944907-40944926 Msa0500490:intron 40.0%
! GAACAGTAAAAGCCTTATGG+TGG + chr3_4:40944994-40945013 None:intergenic 40.0%
ATCACATCATATACAAGGCG+GGG + chr3_4:40945066-40945085 None:intergenic 40.0%
TATGATGTGATTGAGAGTCC+CGG - chr3_4:40945075-40945094 Msa0500490:intron 40.0%
!! ATCTGTAAAAGTGCTGGTTC+AGG + chr3_4:40945120-40945139 None:intergenic 40.0%
AGCACAGATTTCCATAAGAG+AGG - chr3_4:40945234-40945253 Msa0500490:intron 40.0%
GCACAGATTTCCATAAGAGA+GGG - chr3_4:40945235-40945254 Msa0500490:intron 40.0%
TTGAAATGTGGCTGGTACAT+TGG - chr3_4:40945282-40945301 Msa0500490:intron 40.0%
GGTACATTGGTCAATCTGAA+CGG - chr3_4:40945295-40945314 Msa0500490:intron 40.0%
TGTAATGCCTATGTTGAGGT+CGG - chr3_4:40945332-40945351 Msa0500490:intron 40.0%
!! TTGAGGTCGGAATCTTGTTT+TGG - chr3_4:40945345-40945364 Msa0500490:intron 40.0%
!!! TGAGGTCGGAATCTTGTTTT+GGG - chr3_4:40945346-40945365 Msa0500490:intron 40.0%
GGGCAAGTTACCATCAAATA+TGG + chr3_4:40945390-40945409 None:intergenic 40.0%
ACGCAGTGGGTAAATTACAT+GGG + chr3_4:40945441-40945460 None:intergenic 40.0%
AACGCAGTGGGTAAATTACA+TGG + chr3_4:40945442-40945461 None:intergenic 40.0%
CTGTTATAGAAGAACGCAGT+GGG + chr3_4:40945454-40945473 None:intergenic 40.0%
CACTGCGTTCTTCTATAACA+GGG - chr3_4:40945453-40945472 Msa0500490:CDS 40.0%
ACCATCATACTGAGTGCATT+GGG + chr3_4:40945509-40945528 None:intergenic 40.0%
! CAGTATGATGGTGTACTAAG+AGG - chr3_4:40945517-40945536 Msa0500490:intron 40.0%
ATGGTGTACTAAGAGGTAAC+AGG - chr3_4:40945524-40945543 Msa0500490:intron 40.0%
!!! CTGGTTTTGATAGAAAGCCA+AGG + chr3_4:40945584-40945603 None:intergenic 40.0%
! CTTGGCTTTCTATCAAAACC+AGG - chr3_4:40945582-40945601 Msa0500490:intron 40.0%
GTTCAACATGAGGAAAATCC+CGG + chr3_4:40945646-40945665 None:intergenic 40.0%
GATCTCACAGTCAATGAACA+CGG + chr3_4:40945761-40945780 None:intergenic 40.0%
CATTTCAAGACTCTTGTCTC+TGG - chr3_4:40945793-40945812 Msa0500490:intron 40.0%
!! GGGTTCCTTAGGTTGAAATA+CGG + chr3_4:40945849-40945868 None:intergenic 40.0%
!! TGGCTCAGATGTACTAGTTT+TGG - chr3_4:40945909-40945928 Msa0500490:intron 40.0%
!!! TGTACTAGTTTTGGACTCCT+CGG - chr3_4:40945918-40945937 Msa0500490:intron 40.0%
! TGGATAGTTTTCCCACTTCT+TGG - chr3_4:40945983-40946002 Msa0500490:intron 40.0%
! TAGTTTTCCCACTTCTTGGT+TGG - chr3_4:40945987-40946006 Msa0500490:intron 40.0%
GGATTATCCAACCAAGAAGT+GGG + chr3_4:40945997-40946016 None:intergenic 40.0%
AGGATTATCCAACCAAGAAG+TGG + chr3_4:40945998-40946017 None:intergenic 40.0%
ATGAACCCTCTGCTATAGAT+AGG - chr3_4:40946064-40946083 Msa0500490:intron 40.0%
TGCTAGAGAAGGCAAAATGA+AGG + chr3_4:40946118-40946137 None:intergenic 40.0%
TGTAGGGATACATTCTCCTT+GGG + chr3_4:40946281-40946300 None:intergenic 40.0%
ATGTAGGGATACATTCTCCT+TGG + chr3_4:40946282-40946301 None:intergenic 40.0%
AGAAGGACGAAAGAATATGC+TGG + chr3_4:40946377-40946396 None:intergenic 40.0%
!! GGGTTGATACTTGATAGTGT+AGG + chr3_4:40946434-40946453 None:intergenic 40.0%
! AATGTCTGTGCTTTTACTGG+GGG + chr3_4:40946455-40946474 None:intergenic 40.0%
GATACTAATGTGTCCGACAT+AGG + chr3_4:40946502-40946521 None:intergenic 40.0%
ATGTCGGACACATTAGTATC+AGG - chr3_4:40946502-40946521 Msa0500490:intron 40.0%
CCTTAAGTAAGGTAACACCA+TGG + chr3_4:40946838-40946857 None:intergenic 40.0%
!! CCATGGTGTTACCTTACTTA+AGG - chr3_4:40946835-40946854 Msa0500490:intron 40.0%
ACAGAGCAGAAGTGAACAAT+TGG + chr3_4:40946899-40946918 None:intergenic 40.0%
!!! ACCTGTTCTGGTTTTTCTTC+GGG - chr3_4:40946981-40947000 Msa0500490:CDS 40.0%
TAGAGCGATCAAAATTGGGA+TGG + chr3_4:40947095-40947114 None:intergenic 40.0%
!! ATCCCAATTTTGATCGCTCT+AGG - chr3_4:40947094-40947113 Msa0500490:CDS 40.0%
CACCTAGAGCGATCAAAATT+GGG + chr3_4:40947099-40947118 None:intergenic 40.0%
ACACCTAGAGCGATCAAAAT+TGG + chr3_4:40947100-40947119 None:intergenic 40.0%
ATGTTCATAGTGCGACAAGA+TGG - chr3_4:40947120-40947139 Msa0500490:CDS 40.0%
ATGCAGACAGTTTCATTCTC+AGG - chr3_4:40947208-40947227 Msa0500490:CDS 40.0%
TCTCAGTTATTGTTGCGAGG+TGG + chr3_4:40938331-40938350 None:intergenic 45.0%
CCGGTTCTTTCACAAGGTAA+AGG - chr3_4:40938638-40938657 Msa0500490:CDS 45.0%
AGGTAAAGGAGGAATTGTGG+AGG - chr3_4:40938652-40938671 Msa0500490:CDS 45.0%
GAAGATACCGTTCCTTTGGT+TGG - chr3_4:40938770-40938789 Msa0500490:intron 45.0%
! GTGATTGGCGTCATGTTTTG+AGG + chr3_4:40939279-40939298 None:intergenic 45.0%
GTATGCACTATGCGGTTATG+GGG + chr3_4:40939562-40939581 None:intergenic 45.0%
CTGTATGCACTATGCGGTTA+TGG + chr3_4:40939564-40939583 None:intergenic 45.0%
TAACCGCATAGTGCATACAG+AGG - chr3_4:40939564-40939583 Msa0500490:intron 45.0%
AACCGCATAGTGCATACAGA+GGG - chr3_4:40939565-40939584 Msa0500490:intron 45.0%
AACCCTCTGTATGCACTATG+CGG + chr3_4:40939570-40939589 None:intergenic 45.0%
CTAACACAACCCCACAAAAC+CGG + chr3_4:40939696-40939715 None:intergenic 45.0%
TCCAACACAACCCCACAAAA+CGG + chr3_4:40939770-40939789 None:intergenic 45.0%
TGCTTGAAATGGCCTCTTCT+TGG - chr3_4:40939827-40939846 Msa0500490:intron 45.0%
CAGTCATGTTCACCAAGAAG+AGG + chr3_4:40939842-40939861 None:intergenic 45.0%
!! GCAGCCATTTTATATTGCCC+AGG + chr3_4:40939937-40939956 None:intergenic 45.0%
AAAATGGCTGCGGCAATATC+AGG - chr3_4:40939946-40939965 Msa0500490:intron 45.0%
CGGCAATATCAGGACTGTAT+TGG - chr3_4:40939956-40939975 Msa0500490:intron 45.0%
TGCAGTGAAGATGGGAAAGA+AGG - chr3_4:40940054-40940073 Msa0500490:intron 45.0%
GCAGTGAAGATGGGAAAGAA+GGG - chr3_4:40940055-40940074 Msa0500490:intron 45.0%
! CAATGGTTTTCTCGTGCTCT+GGG + chr3_4:40940267-40940286 None:intergenic 45.0%
! ACAATGGTTTTCTCGTGCTC+TGG + chr3_4:40940268-40940287 None:intergenic 45.0%
TGGAAGGAGCTTCTCAACAA+TGG + chr3_4:40940284-40940303 None:intergenic 45.0%
GAGATTCAGGGTGAAATGGA+AGG + chr3_4:40940300-40940319 None:intergenic 45.0%
ATCAGCTGTTGCCTACTGAA+AGG - chr3_4:40940491-40940510 Msa0500490:intron 45.0%
!! TATTGGGACCCCACTTTTGA+AGG + chr3_4:40940589-40940608 None:intergenic 45.0%
AAAAGTGGGGTCCCAATAAC+TGG - chr3_4:40940591-40940610 Msa0500490:intron 45.0%
CAAGTTGTTAGCTATTGGCG+AGG - chr3_4:40940622-40940641 Msa0500490:intron 45.0%
! GGGGTGCATTTTGTTAAGTG+TGG + chr3_4:40940750-40940769 None:intergenic 45.0%
!! TTGGTATCCTCTAGAGTGTG+GGG + chr3_4:40940769-40940788 None:intergenic 45.0%
!! GATTGGTATCCTCTAGAGTG+TGG + chr3_4:40940771-40940790 None:intergenic 45.0%
GGATAGGCTACATAGAAAGG+GGG + chr3_4:40940939-40940958 None:intergenic 45.0%
GGGATAGGCTACATAGAAAG+GGG + chr3_4:40940940-40940959 None:intergenic 45.0%
GAGGGATAGGCTACATAGAA+AGG + chr3_4:40940942-40940961 None:intergenic 45.0%
TTCTATGTAGCCTATCCCTC+AGG - chr3_4:40940942-40940961 Msa0500490:intron 45.0%
CTATCATCCATCCCAATAGC+GGG - chr3_4:40941058-40941077 Msa0500490:intron 45.0%
CTTCTGAGTAGCCCAAAGTT+CGG + chr3_4:40941091-40941110 None:intergenic 45.0%
TCAGTCTGGCCATCAAATTC+AGG - chr3_4:40941151-40941170 Msa0500490:intron 45.0%
AGAGATAGGACCATTTCGCT+TGG - chr3_4:40941360-40941379 Msa0500490:intron 45.0%
GAGATAGGACCATTTCGCTT+GGG - chr3_4:40941361-40941380 Msa0500490:intron 45.0%
! GTTTTGCATCCATGGAACAG+AGG + chr3_4:40942037-40942056 None:intergenic 45.0%
! AGCTTCACGTTTTGCATCCA+TGG + chr3_4:40942045-40942064 None:intergenic 45.0%
CAAAACGTGAAGCTCTTGTG+CGG - chr3_4:40942051-40942070 Msa0500490:intron 45.0%
! TCCTTCTCCTTTTGTGTGTG+CGG - chr3_4:40942125-40942144 Msa0500490:intron 45.0%
GCCTTAAACCCATTGGACAT+TGG + chr3_4:40942221-40942240 None:intergenic 45.0%
CAAATGGGCCTTAAACCCAT+TGG + chr3_4:40942228-40942247 None:intergenic 45.0%
TTCAGAAGGAGTCGGTTGTT+GGG + chr3_4:40942544-40942563 None:intergenic 45.0%
TTTCAGAAGGAGTCGGTTGT+TGG + chr3_4:40942545-40942564 None:intergenic 45.0%
AGGTCACAAAGACCTTTGCT+AGG + chr3_4:40942632-40942651 None:intergenic 45.0%
TGAAACTCGTAGAGTAGCCA+TGG - chr3_4:40942943-40942962 Msa0500490:intron 45.0%
GGCTACCAGTGCTAATCTAA+TGG + chr3_4:40942996-40943015 None:intergenic 45.0%
ACACAGTAGGAAGATGGCAT+GGG + chr3_4:40943418-40943437 None:intergenic 45.0%
AACACAGTAGGAAGATGGCA+TGG + chr3_4:40943419-40943438 None:intergenic 45.0%
CTGAGAGATCTCAAACACAG+TGG + chr3_4:40943506-40943525 None:intergenic 45.0%
! TGTGGTAAGCTTTAGCTCGA+GGG - chr3_4:40943769-40943788 Msa0500490:intron 45.0%
TATGACATTGCGTACCAGGT+TGG + chr3_4:40944332-40944351 None:intergenic 45.0%
TGAGTATGACATTGCGTACC+AGG + chr3_4:40944336-40944355 None:intergenic 45.0%
CCACTCTACAGATCACCTTA+TGG + chr3_4:40944466-40944485 None:intergenic 45.0%
CCATAAGGTGATCTGTAGAG+TGG - chr3_4:40944463-40944482 Msa0500490:intron 45.0%
ACAGCCCACAGGTACTTAAT+TGG + chr3_4:40944512-40944531 None:intergenic 45.0%
! AATTAAGTACCTGTGGGCTG+TGG - chr3_4:40944511-40944530 Msa0500490:intron 45.0%
ACTGGCAGTCATACTTGCTT+GGG + chr3_4:40944607-40944626 None:intergenic 45.0%
TCATGCATGATGCACCTACT+TGG - chr3_4:40944662-40944681 Msa0500490:intron 45.0%
ATGATGCACCTACTTGGAGA+CGG - chr3_4:40944668-40944687 Msa0500490:intron 45.0%
ACAAGCTGTCACTACATTGC+CGG + chr3_4:40944836-40944855 None:intergenic 45.0%
CTTAACTAGCCAGCTCAGAT+TGG - chr3_4:40945013-40945032 Msa0500490:intron 45.0%
AAGTGAACTCCAATCTGAGC+TGG + chr3_4:40945025-40945044 None:intergenic 45.0%
TATACAAGGCGGGGTTACTA+TGG + chr3_4:40945057-40945076 None:intergenic 45.0%
ATGATGTGATTGAGAGTCCC+GGG - chr3_4:40945076-40945095 Msa0500490:intron 45.0%
TTTCCATAAGAGAGGGATGC+AGG - chr3_4:40945242-40945261 Msa0500490:intron 45.0%
ACAGCACATTGAAATGTGGC+TGG - chr3_4:40945274-40945293 Msa0500490:intron 45.0%
CAAGATTCCGACCTCAACAT+AGG + chr3_4:40945342-40945361 None:intergenic 45.0%
CCTGTTATAGAAGAACGCAG+TGG + chr3_4:40945455-40945474 None:intergenic 45.0%
CCACTGCGTTCTTCTATAAC+AGG - chr3_4:40945452-40945471 Msa0500490:CDS 45.0%
ACAGGGATTGCATACTTACC+TGG - chr3_4:40945470-40945489 Msa0500490:CDS 45.0%
CCATCATACTGAGTGCATTG+GGG + chr3_4:40945508-40945527 None:intergenic 45.0%
CACCATCATACTGAGTGCAT+TGG + chr3_4:40945510-40945529 None:intergenic 45.0%
ATCCCTTGACCTTCATGGTT+TGG - chr3_4:40945618-40945637 Msa0500490:intron 45.0%
TCCCTTGACCTTCATGGTTT+GGG - chr3_4:40945619-40945638 Msa0500490:intron 45.0%
!! TTCACACAGAGAGTGCCATT+TGG + chr3_4:40945684-40945703 None:intergenic 45.0%
TGAACTCCTCCCTTTGACAA+TGG - chr3_4:40945700-40945719 Msa0500490:intron 45.0%
TGGACGACTCCATTGTCAAA+GGG + chr3_4:40945712-40945731 None:intergenic 45.0%
ATGGACGACTCCATTGTCAA+AGG + chr3_4:40945713-40945732 None:intergenic 45.0%
ACTCTTGTCTCTGGCTGAAA+AGG - chr3_4:40945802-40945821 Msa0500490:intron 45.0%
TACGGTCATTGCTTATGTCG+TGG + chr3_4:40945831-40945850 None:intergenic 45.0%
TCAACCTAAGGAACCCATGA+CGG - chr3_4:40945853-40945872 Msa0500490:intron 45.0%
TATCACATCACGGTTTCCCA+AGG - chr3_4:40946262-40946281 Msa0500490:intron 45.0%
! GCAGGCGAAAAAAGTGTAGA+AGG + chr3_4:40946394-40946413 None:intergenic 45.0%
! ATGTCTGTGCTTTTACTGGG+GGG + chr3_4:40946454-40946473 None:intergenic 45.0%
TGTCCGACATAGGTATGACA+CGG + chr3_4:40946492-40946511 None:intergenic 45.0%
CGTGGATACAACGTGAGATA+CGG + chr3_4:40946780-40946799 None:intergenic 45.0%
!!! CCTGTTCTGGTTTTTCTTCG+GGG - chr3_4:40946982-40947001 Msa0500490:CDS 45.0%
! TCTCTTTTCCTGCTGCAGAT+TGG - chr3_4:40947066-40947085 Msa0500490:CDS 45.0%
GTTTCATTCTCAGGCACTTC+AGG - chr3_4:40947217-40947236 Msa0500490:CDS 45.0%
TAACAACTCACTAATCGCCG+CGG - chr3_4:40947440-40947459 Msa0500490:five_prime_UTR 45.0%
!!! ATAAATAATATAGAAATTTT+TGG - chr3_4:40947394-40947413 Msa0500490:five_prime_UTR 5.0%
! GGGAAACCGGTTCTTTCACA+AGG - chr3_4:40938632-40938651 Msa0500490:CDS 50.0%
!!! ACCTCACATGCCGGTTTTGT+GGG - chr3_4:40939683-40939702 Msa0500490:intron 50.0%
! TCCGTTTTGTGGGGTTGTGT+TGG - chr3_4:40939766-40939785 Msa0500490:intron 50.0%
AAATGCACCCCACACTCTAG+AGG - chr3_4:40940759-40940778 Msa0500490:intron 50.0%
! TCCATCCCAATAGCGGGAAT+CGG - chr3_4:40941064-40941083 Msa0500490:intron 50.0%
GTCTCTGATCCCAAGCGAAA+TGG + chr3_4:40941373-40941392 None:intergenic 50.0%
GGACACGAAGGATCTTGACA+TGG + chr3_4:40941919-40941938 None:intergenic 50.0%
! CAAGATCGCTTTGGACACGA+AGG + chr3_4:40941931-40941950 None:intergenic 50.0%
! GGCGGCAGCAACATCATTTT+GGG + chr3_4:40942016-40942035 None:intergenic 50.0%
! AGGCGGCAGCAACATCATTT+TGG + chr3_4:40942017-40942036 None:intergenic 50.0%
TTGCATCCATGGAACAGAGG+CGG + chr3_4:40942034-40942053 None:intergenic 50.0%
! ACATTGGTGACCCGAGAGAA+AGG + chr3_4:40942205-40942224 None:intergenic 50.0%
TCGGGTCACCAATGTCCAAT+GGG - chr3_4:40942210-40942229 Msa0500490:intron 50.0%
AAACACACGTGCAGCAAGCT+TGG + chr3_4:40942267-40942286 None:intergenic 50.0%
GGGTTAGGACACCATCTTAG+TGG + chr3_4:40942719-40942738 None:intergenic 50.0%
AACAGGCTGTAGCGTACGAA+GGG + chr3_4:40942739-40942758 None:intergenic 50.0%
GTTTCATCCAACTTGGACCG+AGG + chr3_4:40942929-40942948 None:intergenic 50.0%
ACAAGATGGCTCACAAAGGG+TGG + chr3_4:40943239-40943258 None:intergenic 50.0%
! GTGTGGTAAGCTTTAGCTCG+AGG - chr3_4:40943768-40943787 Msa0500490:intron 50.0%
TGACAAATAGGTCGACCTGC+AGG + chr3_4:40944270-40944289 None:intergenic 50.0%
AGAGAGATGGGAACAGACAG+AGG + chr3_4:40944402-40944421 None:intergenic 50.0%
CTGTTCCCATCTCTCTCATG+AGG - chr3_4:40944406-40944425 Msa0500490:intron 50.0%
TCCCATCTCTCTCATGAGGA+TGG - chr3_4:40944410-40944429 Msa0500490:intron 50.0%
CCCATCCTCATGAGAGAGAT+GGG + chr3_4:40944414-40944433 None:intergenic 50.0%
CCCATCTCTCTCATGAGGAT+GGG - chr3_4:40944411-40944430 Msa0500490:intron 50.0%
TCCCATCCTCATGAGAGAGA+TGG + chr3_4:40944415-40944434 None:intergenic 50.0%
CACTGGCAGTCATACTTGCT+TGG + chr3_4:40944608-40944627 None:intergenic 50.0%
! CGATGCATGGGTTGAGGTTT+AGG + chr3_4:40944770-40944789 None:intergenic 50.0%
TGTCACTACATTGCCGGTGT+TGG + chr3_4:40944830-40944849 None:intergenic 50.0%
!! AAAAGTGCTGGTTCAGGACG+AGG + chr3_4:40945114-40945133 None:intergenic 50.0%
TGTCCTGCATCCCTCTCTTA+TGG + chr3_4:40945248-40945267 None:intergenic 50.0%
TTGGGGTAGGTGACAATTCC+AGG + chr3_4:40945491-40945510 None:intergenic 50.0%
CATACTGAGTGCATTGGGGT+AGG + chr3_4:40945504-40945523 None:intergenic 50.0%
CCCCAATGCACTCAGTATGA+TGG - chr3_4:40945505-40945524 Msa0500490:CDS 50.0%
CCCCAAACCATGAAGGTCAA+GGG + chr3_4:40945623-40945642 None:intergenic 50.0%
CCCTTGACCTTCATGGTTTG+GGG - chr3_4:40945620-40945639 Msa0500490:intron 50.0%
!! ACACAGAGAGTGCCATTTGG+TGG + chr3_4:40945681-40945700 None:intergenic 50.0%
ACGACTCCATTGTCAAAGGG+AGG + chr3_4:40945709-40945728 None:intergenic 50.0%
GGAGAGCGATTTCACGTGTA+TGG + chr3_4:40945732-40945751 None:intergenic 50.0%
AGTCAATGAACACGGAGGTG+AGG + chr3_4:40945753-40945772 None:intergenic 50.0%
CTCACAGTCAATGAACACGG+AGG + chr3_4:40945758-40945777 None:intergenic 50.0%
GGTCATTGCTTATGTCGTGG+AGG + chr3_4:40945828-40945847 None:intergenic 50.0%
CAACCTAAGGAACCCATGAC+GGG - chr3_4:40945854-40945873 Msa0500490:intron 50.0%
AACCTAAGGAACCCATGACG+GGG - chr3_4:40945855-40945874 Msa0500490:intron 50.0%
!!! AGTTTTGGACTCCTCGGACA+AGG - chr3_4:40945924-40945943 Msa0500490:intron 50.0%
! TGATAGTGTAGGCCCAACTG+AGG + chr3_4:40946423-40946442 None:intergenic 50.0%
GTGCCGTGTCATACCTATGT+CGG - chr3_4:40946486-40946505 Msa0500490:intron 50.0%
CAGCTGGTCAAATCAGTCCA+TGG - chr3_4:40946818-40946837 Msa0500490:intron 50.0%
CCCCGAAGAAAAACCAGAAC+AGG + chr3_4:40946985-40947004 None:intergenic 50.0%
TTCTCAGGCACTTCAGGAAG+CGG - chr3_4:40947223-40947242 Msa0500490:CDS 50.0%
GCAATCCTCACCTCACATGC+CGG - chr3_4:40939674-40939693 Msa0500490:intron 55.0%
CAAAACCGGCATGTGAGGTG+AGG + chr3_4:40939682-40939701 None:intergenic 55.0%
!!! CACCTCACATGCCGGTTTTG+TGG - chr3_4:40939682-40939701 Msa0500490:intron 55.0%
!!! CCTCACATGCCGGTTTTGTG+GGG - chr3_4:40939684-40939703 Msa0500490:intron 55.0%
TGGTCCAAACCCCACTGCAA+TGG - chr3_4:40939976-40939995 Msa0500490:intron 55.0%
GGTCCAAACCCCACTGCAAT+GGG - chr3_4:40939977-40939996 Msa0500490:intron 55.0%
!! CAATGGGCACTGGGCAAGTA+AGG - chr3_4:40939993-40940012 Msa0500490:intron 55.0%
GTAAGGCAATCCGTCGTCCA+TGG - chr3_4:40940010-40940029 Msa0500490:intron 55.0%
GGCAAGGAAACCTGAGGGAT+AGG + chr3_4:40940955-40940974 None:intergenic 55.0%
!! GAGAGTGTCCGTGCATACAG+AGG + chr3_4:40941005-40941024 None:intergenic 55.0%
! CCATCCCAATAGCGGGAATC+GGG - chr3_4:40941065-40941084 Msa0500490:intron 55.0%
AGAAGTGAAACAGTGCCCGC+AGG - chr3_4:40941106-40941125 Msa0500490:intron 55.0%
GAATATCGCGCTAGTCCCTG+TGG + chr3_4:40941245-40941264 None:intergenic 55.0%
GCCGCACACACAAAAGGAGA+AGG + chr3_4:40942129-40942148 None:intergenic 55.0%
TAAGGGGCCGCACACACAAA+AGG + chr3_4:40942135-40942154 None:intergenic 55.0%
CTCGGGTCACCAATGTCCAA+TGG - chr3_4:40942209-40942228 Msa0500490:intron 55.0%
! GTCGGTTGTTGGGTTGCAAG+AGG + chr3_4:40942534-40942553 None:intergenic 55.0%
GCTGTAGCGTACGAAGGGTT+AGG + chr3_4:40942734-40942753 None:intergenic 55.0%
CAACAGGCTGTAGCGTACGA+AGG + chr3_4:40942740-40942759 None:intergenic 55.0%
CTTCGTACGCTACAGCCTGT+TGG - chr3_4:40942738-40942757 Msa0500490:intron 55.0%
GGGAAGGATTTCACGCCAAC+AGG + chr3_4:40942756-40942775 None:intergenic 55.0%
ACTGAATCCTGAGGGCTCCT+CGG - chr3_4:40942909-40942928 Msa0500490:intron 55.0%
AGAGTAGCCATGGTACCCAC+TGG - chr3_4:40942953-40942972 Msa0500490:intron 55.0%
GAGTAGCCATGGTACCCACT+GGG - chr3_4:40942954-40942973 Msa0500490:intron 55.0%
GTTGGGGCCAGACCACAATT+CGG + chr3_4:40943622-40943641 None:intergenic 55.0%
ATGAGGATGGGACTCTCCCA+AGG - chr3_4:40944423-40944442 Msa0500490:intron 55.0%
GGCAGTCATACTTGCTTGGG+AGG + chr3_4:40944604-40944623 None:intergenic 55.0%
ATGCACCTACTTGGAGACGG+AGG - chr3_4:40944671-40944690 Msa0500490:intron 55.0%
ACCTACTTGGAGACGGAGGA+TGG - chr3_4:40944675-40944694 Msa0500490:intron 55.0%
TCCATCCTCCGTCTCCAAGT+AGG + chr3_4:40944679-40944698 None:intergenic 55.0%
TACTTGGAGACGGAGGATGG+AGG - chr3_4:40944678-40944697 Msa0500490:intron 55.0%
TGAGGTTTAGGCGCGGTCAT+TGG + chr3_4:40944758-40944777 None:intergenic 55.0%
! CATGGGTTGAGGTTTAGGCG+CGG + chr3_4:40944765-40944784 None:intergenic 55.0%
AACCCATGCATCGCACTCGA+TGG - chr3_4:40944777-40944796 Msa0500490:intron 55.0%
CTCCATCGAGTGCGATGCAT+GGG + chr3_4:40944782-40944801 None:intergenic 55.0%
TCTCCATCGAGTGCGATGCA+TGG + chr3_4:40944783-40944802 None:intergenic 55.0%
GCATCGCACTCGATGGAGAA+TGG - chr3_4:40944784-40944803 Msa0500490:intron 55.0%
GCCCCAAACCATGAAGGTCA+AGG + chr3_4:40945624-40945643 None:intergenic 55.0%
! TGACCTTCATGGTTTGGGGC+CGG - chr3_4:40945624-40945643 Msa0500490:intron 55.0%
TTCCCCGTCATGGGTTCCTT+AGG + chr3_4:40945860-40945879 None:intergenic 55.0%
! ACCCATGACGGGGAACTTTC+AGG - chr3_4:40945865-40945884 Msa0500490:intron 55.0%
GCCTGAAAGTTCCCCGTCAT+GGG + chr3_4:40945869-40945888 None:intergenic 55.0%
AGCCACCAGAAGCTCGTAAC+GGG + chr3_4:40945894-40945913 None:intergenic 55.0%
GAGCCACCAGAAGCTCGTAA+CGG + chr3_4:40945895-40945914 None:intergenic 55.0%
TTTGGACTCCTCGGACAAGG+TGG - chr3_4:40945927-40945946 Msa0500490:intron 55.0%
GCCTGCTCGTAACCTCAGTT+GGG - chr3_4:40946408-40946427 Msa0500490:intron 55.0%
GATGGTAGCCAATCTGCAGC+AGG + chr3_4:40947077-40947096 None:intergenic 55.0%
AGTGCGACAAGATGGAGAGC+TGG - chr3_4:40947128-40947147 Msa0500490:CDS 55.0%
GGAGTAATTCGCAGCATCCG+CGG + chr3_4:40947460-40947479 None:intergenic 55.0%
CCCCACAAAACCGGCATGTG+AGG + chr3_4:40939687-40939706 None:intergenic 60.0%
GTGCCCATTGCAGTGGGGTT+TGG + chr3_4:40939983-40940002 None:intergenic 60.0%
AACCCCACTGCAATGGGCAC+TGG - chr3_4:40939983-40940002 Msa0500490:intron 60.0%
ACCCCACTGCAATGGGCACT+GGG - chr3_4:40939984-40940003 Msa0500490:intron 60.0%
TGCCCAGTGCCCATTGCAGT+GGG + chr3_4:40939989-40940008 None:intergenic 60.0%
TTGCCCAGTGCCCATTGCAG+TGG + chr3_4:40939990-40940009 None:intergenic 60.0%
CCCGATTCCCGCTATTGGGA+TGG + chr3_4:40941068-40941087 None:intergenic 60.0%
TCGGCCCGATTCCCGCTATT+GGG + chr3_4:40941072-40941091 None:intergenic 60.0%
TTCGGCCCGATTCCCGCTAT+TGG + chr3_4:40941073-40941092 None:intergenic 60.0%
CGGGAATCGGGCCGAACTTT+GGG - chr3_4:40941077-40941096 Msa0500490:intron 60.0%
CGGTATCGCTTGGGACACGA+AGG + chr3_4:40941485-40941504 None:intergenic 60.0%
TTGCTGCCGCCTCTGTTCCA+TGG - chr3_4:40942025-40942044 Msa0500490:intron 60.0%
GTGCGGCTCTCCCTAAAACG+TGG - chr3_4:40942068-40942087 Msa0500490:intron 60.0%
GGGCTGTGGCAGTCCTTCAA+AGG - chr3_4:40944525-40944544 Msa0500490:intron 60.0%
GGAGACGGAGGATGGAGGTA+AGG - chr3_4:40944683-40944702 Msa0500490:intron 60.0%
! CGAGTGCGATGCATGGGTTG+AGG + chr3_4:40944776-40944795 None:intergenic 60.0%
ACGAGGCAGAGTGACTGTCC+CGG + chr3_4:40945097-40945116 None:intergenic 60.0%
! GACCTTCATGGTTTGGGGCC+GGG - chr3_4:40945625-40945644 Msa0500490:intron 60.0%
ATCCCGGCCCCAAACCATGA+AGG + chr3_4:40945630-40945649 None:intergenic 60.0%
GGCCTGAAAGTTCCCCGTCA+TGG + chr3_4:40945870-40945889 None:intergenic 60.0%
! CACCAGAAGCTCGTAACGGG+GGG + chr3_4:40945891-40945910 None:intergenic 60.0%
CCACCAGAAGCTCGTAACGG+GGG + chr3_4:40945892-40945911 None:intergenic 60.0%
GCCACCAGAAGCTCGTAACG+GGG + chr3_4:40945893-40945912 None:intergenic 60.0%
CAAGGGATCCACCTTGTCCG+AGG + chr3_4:40945938-40945957 None:intergenic 60.0%
CGCCTGCTCGTAACCTCAGT+TGG - chr3_4:40946407-40946426 Msa0500490:intron 60.0%
GCCCAACTGAGGTTACGAGC+AGG + chr3_4:40946412-40946431 None:intergenic 60.0%
GCCCAGTGCCCATTGCAGTG+GGG + chr3_4:40939988-40940007 None:intergenic 65.0%
GCGGGAATCGGGCCGAACTT+TGG - chr3_4:40941076-40941095 Msa0500490:intron 65.0%
ACTTGGACCGAGGAGCCCTC+AGG + chr3_4:40942919-40942938 None:intergenic 65.0%
GAGGGCTCCTCGGTCCAAGT+TGG - chr3_4:40942919-40942938 Msa0500490:intron 65.0%
GAAGGACTGCCACAGCCCAC+AGG + chr3_4:40944523-40944542 None:intergenic 65.0%
CGAGGCAGAGTGACTGTCCC+GGG + chr3_4:40945096-40945115 None:intergenic 65.0%
CCCCCGTTACGAGCTTCTGG+TGG - chr3_4:40945889-40945908 Msa0500490:intron 65.0%
GGCCCCCCGTTACGAGCTTC+TGG - chr3_4:40945886-40945905 Msa0500490:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 40938278 40947493 40938278 ID=Msa0500490;Name=Msa0500490
chr3_4 mRNA 40938278 40947493 40938278 ID=Msa0500490-mRNA-1;Parent=Msa0500490;Name=Msa0500490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=159|1|1|1|0|0.33|3|233|225
chr3_4 exon 40938278 40938687 40938278 ID=Msa0500490-mRNA-1:exon:8401;Parent=Msa0500490-mRNA-1
chr3_4 exon 40945417 40945531 40945417 ID=Msa0500490-mRNA-1:exon:8400;Parent=Msa0500490-mRNA-1
chr3_4 exon 40946949 40947493 40946949 ID=Msa0500490-mRNA-1:exon:8399;Parent=Msa0500490-mRNA-1
chr3_4 five_prime_UTR 40947335 40947493 40947335 ID=Msa0500490-mRNA-1:five_prime_utr;Parent=Msa0500490-mRNA-1
chr3_4 CDS 40946949 40947334 40946949 ID=Msa0500490-mRNA-1:cds;Parent=Msa0500490-mRNA-1
chr3_4 CDS 40945417 40945531 40945417 ID=Msa0500490-mRNA-1:cds;Parent=Msa0500490-mRNA-1
chr3_4 CDS 40938511 40938687 40938511 ID=Msa0500490-mRNA-1:cds;Parent=Msa0500490-mRNA-1
chr3_4 three_prime_UTR 40938278 40938510 40938278 ID=Msa0500490-mRNA-1:three_prime_utr;Parent=Msa0500490-mRNA-1
Gene Sequence

>Msa0500490

ATGGCTTCTTCAATATCCAACACAAAAATACTACTGCATGCTCATTCCTTCAAAAATCCTTTTTCTTTTCGTTCTTCTCGTTTGATTCTATCCATTCCTTTCTACTCCAAAAACAAACCACAGTTGCTTCATTCTCGTTTCTCTTCTTCCCTCAAAGTAGCTTCTTCTTCTTCTGAAGCTCAAAACAATTTGCAAGGGAAACCGGTTCTTTCACAAGGTAAAGGAGGAATTGTGGAGGAACAGAGCAGCTATTCCTATCAACAAGAGGAAGTAGAAGAAGAAGATAGTACTGATGAACAAGATAAGTGGGTTGATTGGGAAGATCAGATTTTGGAAGATACCGTTCCTTTGGTTGGTTTTGTTAGAACAATCCTTCATTCTGGACAATATGAAAATGGAGATAGACTAAGCCCAGAGCACGAGAAAACCATTGTTGAGAAGCTCCTTCCATTTCACCCTGAATCTCAGAAAAAGATTGGATGTGGAATCGATTATATCACGATTGGCTACCATCCCAATTTTGATCGCTCTAGGTGTATGTTCATAGTGCGACAAGATGGAGAGCTGGTAGACTTTTCATATTGGAAATGCATAAAGGGCTTGATCAGAAAGAATTATCCATTATATGCAGACAGTTTCATTCTCAGGCACTTCAGGAAGCGGAGTCGTAATTTGTGA

Protein sequence

>Msa0500490

MASSISNTKILLHAHSFKNPFSFRSSRLILSIPFYSKNKPQLLHSRFSSSLKVASSSSEAQNNLQGKPVLSQGKGGIVEEQSSYSYQQEEVEEEDSTDEQDKWVDWEDQILEDTVPLVGFVRTILHSGQYENGDRLSPEHEKTIVEKLLPFHPESQKKIGCGIDYITIGYHPNFDRSRCMFIVRQDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKRSRNL*