AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0569930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569930 MtrunA17_Chr8g0385271 99.670 303 1 0 133 435 225 527 0.0 613
Msa0569930 MtrunA17_Chr3g0131031 89.298 299 32 0 133 431 225 523 0.0 537
Msa0569930 MtrunA17_Chr3g0135611 72.727 220 60 0 133 352 206 425 4.16e-108 327
Msa0569930 MtrunA17_Chr4g0008821 72.273 220 61 0 133 352 209 428 2.07e-107 325
Msa0569930 MtrunA17_Chr1g0156531 80.451 133 26 0 1 133 1 133 1.03e-67 212
Msa0569930 MtrunA17_Chr3g0107531 58.140 129 51 2 22 147 20 148 7.76e-47 158
Msa0569930 MtrunA17_Chr6g0482431 58.140 129 51 2 22 147 20 148 7.76e-47 158
Msa0569930 MtrunA17_Chr4g0045871 95.588 68 3 0 315 382 5 72 3.31e-37 131
Msa0569930 MtrunA17_Chr7g0256841 55.814 86 37 1 26 110 10 95 1.17e-28 109
Msa0569930 MtrunA17_Chr5g0436161 55.814 86 37 1 26 110 10 95 1.74e-27 106
Msa0569930 MtrunA17_Chr5g0424291 54.651 86 36 2 26 110 13 96 2.43e-27 106
Msa0569930 MtrunA17_Chr8g0356641 52.326 86 38 2 26 110 10 93 9.37e-26 101
Msa0569930 MtrunA17_Chr5g0423581 57.471 87 34 2 25 110 9 93 1.23e-25 101
Msa0569930 MtrunA17_Chr4g0027631 57.471 87 34 2 25 110 9 93 1.23e-25 101
Msa0569930 MtrunA17_Chr3g0101781 55.172 87 36 2 25 110 9 93 5.64e-24 97.1
Msa0569930 MtrunA17_Chr8g0362341 47.761 134 62 2 20 152 13 139 1.23e-23 96.3
Msa0569930 MtrunA17_Chr4g0032481 43.810 105 53 2 33 133 3 105 1.42e-23 95.1
Msa0569930 MtrunA17_Chr3g0081971 44.248 113 56 3 26 133 6 116 1.95e-22 92.4
Msa0569930 MtrunA17_Chr2g0281391 53.623 69 31 1 29 96 13 81 2.34e-21 89.7
Msa0569930 MtrunA17_Chr6g0460391 42.268 97 51 2 1 96 1 93 2.85e-20 86.7
Msa0569930 MtrunA17_Chr4g0012911 55.714 70 28 2 26 94 20 87 3.60e-20 85.9
Msa0569930 MtrunA17_Chr8g0362201 56.944 72 29 2 26 96 17 87 3.65e-20 86.3
Msa0569930 MtrunA17_Chr7g0221201 51.429 70 31 2 26 94 20 87 2.25e-18 81.6
Msa0569930 MtrunA17_Chr7g0235001 39.474 114 57 3 27 133 21 129 2.71e-18 81.3
Msa0569930 MtrunA17_Chr2g0303261 54.098 61 27 1 36 96 3 62 3.97e-18 80.5
Msa0569930 MtrunA17_Chr4g0062621 45.055 91 43 2 27 110 69 159 4.07e-18 81.3
Msa0569930 MtrunA17_Chr7g0235891 54.098 61 26 1 286 346 75 133 1.60e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0569930 AT2G30390.1 89.667 300 31 0 133 432 211 510 0.0 535
Msa0569930 AT2G30390.2 86.774 310 31 1 133 432 211 520 0.0 527
Msa0569930 AT5G26030.1 70.536 224 66 0 133 356 200 423 2.58e-114 343
Msa0569930 AT5G26030.2 70.536 224 66 0 133 356 200 423 2.58e-114 343

Find 128 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATCATGTAGATTAAA+AGG 0.157500 4_1:-71972357 Msa0569930:intron
CGCAGAAGCAGCAACGAATT+TGG 0.184768 4_1:-71973646 Msa0569930:CDS
TAGAATCTGGAATAGAAAAT+TGG 0.187973 4_1:-71970256 Msa0569930:CDS
AATAATTGAACTTGGGAAAA+AGG 0.214551 4_1:-71970472 Msa0569930:CDS
AAAAGAGATAGAGTTTAAAA+AGG 0.233944 4_1:-71969280 Msa0569930:three_prime_UTR
CTAACTATGGTGAAAAGTTT+TGG 0.239672 4_1:-71973507 Msa0569930:CDS
GGGGAATATTGCCCTTATTT+AGG 0.242136 4_1:-71969619 Msa0569930:CDS
TATTCAAGTTCACCTAAATA+AGG 0.244445 4_1:+71969607 None:intergenic
CAAAGCTGATGTTACCTAAT+TGG 0.262640 4_1:+71970426 None:intergenic
TTAATTGAAAATGAGCTAAA+AGG 0.267528 4_1:-71972065 Msa0569930:CDS
TGCATACACACTTGCTTATC+AGG 0.269635 4_1:-71970996 Msa0569930:intron
AATTATTGTCTCATCTGTAT+AGG 0.287087 4_1:+71970488 None:intergenic
AAAGAATTGGCTTTAGAATC+TGG 0.287435 4_1:-71970269 Msa0569930:CDS
ATTATTGTCTCATCTGTATA+GGG 0.299242 4_1:+71970489 None:intergenic
TTATCTGGATCTGTGGGTTC+TGG 0.299714 4_1:-71973604 Msa0569930:CDS
TTGACAGTCTTTGGTTCCCC+TGG 0.302419 4_1:-71969825 Msa0569930:intron
CCCCATTCCCACACCAATAT+TGG 0.313869 4_1:+71969746 None:intergenic
ACCAATATTGGTGTGGGAAT+GGG 0.331640 4_1:-71969747 Msa0569930:CDS
GTTTGCTGGCCGTACCAATT+AGG 0.332495 4_1:-71970440 Msa0569930:intron
GGGCAGTGTAGAAGAGTTAT+TGG 0.341489 4_1:-71969804 Msa0569930:CDS
AGAATCTGGAATAGAAAATT+GGG 0.348352 4_1:-71970255 Msa0569930:CDS
GCAGAAGCAGCAACGAATTT+GGG 0.355303 4_1:-71973645 Msa0569930:CDS
TGGGGCCGTGTTCCTGCTCT+TGG 0.355451 4_1:-71970236 Msa0569930:CDS
TGATGTTGAGTACAAAGAAT+TGG 0.371964 4_1:-71970282 Msa0569930:CDS
TGGTTCAAGTTTGCGTCTCT+TGG 0.386465 4_1:-71972275 Msa0569930:CDS
TAGTTTAGACACAGCATTTG+TGG 0.386714 4_1:-71969463 Msa0569930:three_prime_UTR
GATGAAAGTAACCCTAACTA+TGG 0.390623 4_1:-71973520 Msa0569930:CDS
ATTCAAGTTCACCTAAATAA+GGG 0.403742 4_1:+71969608 None:intergenic
TCCTCCATCTCTGCTTTGTA+TGG 0.410650 4_1:+71971067 None:intergenic
AAATGTTGCAAGATTGCTAT+AGG 0.413908 4_1:-71973310 Msa0569930:CDS
CGTTCTCTACCCATTGGAAA+TGG 0.420315 4_1:+71973443 None:intergenic
TGCTAATGGTATACATATAC+AGG 0.421997 4_1:+71969539 None:intergenic
CACCAATATTGGTGTGGGAA+TGG 0.422437 4_1:-71969748 Msa0569930:CDS
ACGGCCATCGCACCAACATA+TGG 0.424661 4_1:+71970161 None:intergenic
GTCTCTTGGAGAGCATATTC+CGG 0.431661 4_1:-71972261 Msa0569930:intron
GCCTCTTCGACATACGCAAC+TGG 0.434176 4_1:+71971097 None:intergenic
AGCGTACCTGTCGAGCTTCA+AGG 0.441814 4_1:+71970132 None:intergenic
ATTGAAAATTGTGGATAAAG+TGG 0.445577 4_1:+71972307 None:intergenic
TGGAGGAACCGAGTTGATAA+TGG 0.449405 4_1:-71973472 Msa0569930:CDS
TGAAATCATGTAGATTAAAA+GGG 0.457587 4_1:-71972356 Msa0569930:intron
GGAGTTGCCACCACCAATAT+TGG 0.459023 4_1:-71969759 Msa0569930:CDS
GGACAAAGAGTGCTGAAACT+TGG 0.466826 4_1:-71969721 Msa0569930:CDS
AAATGAAGTAGTACCTTCTC+TGG 0.467324 4_1:+71972032 None:intergenic
TTCCATTGCCATTGTGTGGA+GGG 0.472954 4_1:+71969572 None:intergenic
ATTATATTATATTATATGAC+TGG 0.475354 4_1:-71969155 Msa0569930:three_prime_UTR
TTTGGGGCTGTAGGAATTGG+AGG 0.485104 4_1:-71973489 Msa0569930:CDS
CAAGAGTACTGGTTCAGACT+TGG 0.487258 4_1:-71969208 Msa0569930:three_prime_UTR
ATGATATTCTTCAGCGCACA+TGG 0.489098 4_1:-71971124 Msa0569930:CDS
TGACAGTCTTTGGTTCCCCT+GGG 0.491554 4_1:-71969824 Msa0569930:intron
CCAACGTGAAGGATACATAA+AGG 0.495643 4_1:-71972099 Msa0569930:CDS
CCAATATTGGTGTGGGAATG+GGG 0.495656 4_1:-71969746 Msa0569930:CDS
GATGAGACAATAATTGAACT+TGG 0.502371 4_1:-71970480 Msa0569930:CDS
ATTTGGGTTTAAAAGTGAAA+GGG 0.506169 4_1:-71973629 Msa0569930:CDS
AGCAGCATATGTGATGCTAA+TGG 0.509044 4_1:+71969525 None:intergenic
ACCCACTTTCATTTCAGACT+TGG 0.509928 4_1:-71970207 Msa0569930:CDS
AATTTGGGTTTAAAAGTGAA+AGG 0.512066 4_1:-71973630 Msa0569930:CDS
ATCGAAGTCATGCACTAAGA+AGG 0.514905 4_1:-71969498 Msa0569930:three_prime_UTR
GCATGAAATTTGTTGTCTAA+AGG 0.518878 4_1:-71973353 Msa0569930:CDS
TCGAGCTTCAAGGTTTGAAA+CGG 0.518947 4_1:+71970142 None:intergenic
TTCAAACCTTGAAGCTCGAC+AGG 0.520547 4_1:-71970138 Msa0569930:intron
ATCATGTAGATTAAAAGGGA+TGG 0.526806 4_1:-71972352 Msa0569930:intron
TCTTGTGTTGTTGACAAGCC+GGG 0.528239 4_1:+71969226 None:intergenic
CTCTTGTGTTGTTGACAAGC+CGG 0.530114 4_1:+71969225 None:intergenic
TATTGGTGTGGGAATGGGGA+TGG 0.531632 4_1:-71969742 Msa0569930:CDS
CGGCCATCGCACCAACATAT+GGG 0.532880 4_1:+71970162 None:intergenic
TGCCAAGTCTGAAATGAAAG+TGG 0.536826 4_1:+71970205 None:intergenic
ATAACTCTTCTACACTGCCC+AGG 0.537496 4_1:+71969807 None:intergenic
ATGCTTATACAGAGTAGAGT+TGG 0.538598 4_1:-71970531 Msa0569930:intron
GTTGCGTATGTCGAAGAGGC+TGG 0.539982 4_1:-71971094 Msa0569930:CDS
AGGATGAGTTGTTTAGCAGT+AGG 0.547314 4_1:-71973333 Msa0569930:CDS
GGAGTGTGTGGATTTAATCA+TGG 0.549813 4_1:-71971047 Msa0569930:CDS
CATCCTCGTTCTCTACCCAT+TGG 0.551373 4_1:+71973437 None:intergenic
TTAGAAGTCACCACTGGAGA+GGG 0.556011 4_1:-71969656 Msa0569930:CDS
TTAGACACAGCATTTGTGGA+TGG 0.556302 4_1:-71969459 Msa0569930:three_prime_UTR
GTGGGTTCACATCCAAGAGC+AGG 0.558709 4_1:+71970224 None:intergenic
AGCAGAGATGGAGGAGTGTG+TGG 0.560959 4_1:-71971059 Msa0569930:CDS
TGTCAACAACACAAGAGTAC+TGG 0.564254 4_1:-71969219 Msa0569930:three_prime_UTR
GAGACGCAAACTTGAACCAC+TGG 0.565410 4_1:+71972279 None:intergenic
TGATCCATACAAAGCAGAGA+TGG 0.567879 4_1:-71971071 Msa0569930:CDS
ATGGCTGCAACCATTTCCAA+TGG 0.569112 4_1:-71973453 Msa0569930:CDS
CATTCCCACACCAATATTGG+TGG 0.572403 4_1:+71969749 None:intergenic
TGGCTGCAACCATTTCCAAT+GGG 0.572963 4_1:-71973452 Msa0569930:CDS
TTTGGGTTTAAAAGTGAAAG+GGG 0.573298 4_1:-71973628 Msa0569930:CDS
AGCATATGACTCACAACGTA+GGG 0.577719 4_1:-71969780 Msa0569930:CDS
TAACTCTTCTACACTGCCCA+GGG 0.581883 4_1:+71969808 None:intergenic
ATTCCATTGCCATTGTGTGG+AGG 0.584737 4_1:+71969571 None:intergenic
TCCCACACCAATATTGGTGG+TGG 0.587248 4_1:+71969752 None:intergenic
AAGAGTGCTGAAACTTGGAA+TGG 0.588223 4_1:-71969716 Msa0569930:CDS
CCTTTATGTATCCTTCACGT+TGG 0.589262 4_1:+71972099 None:intergenic
TCTCCCATATGTTGGTGCGA+TGG 0.590320 4_1:-71970165 Msa0569930:CDS
CGAATTCGAAAATGTTCATG+TGG 0.590975 4_1:-71973571 Msa0569930:CDS
TGCCACCACCAATATTGGTG+TGG 0.592628 4_1:-71969754 Msa0569930:CDS
ATGAGACAATAATTGAACTT+GGG 0.593413 4_1:-71970479 Msa0569930:CDS
GGTTGCAGCCATTATCAACT+CGG 0.595496 4_1:+71973464 None:intergenic
TTTAGAAGTCACCACTGGAG+AGG 0.595864 4_1:-71969657 Msa0569930:CDS
TACCCTCCACACAATGGCAA+TGG 0.597170 4_1:-71969574 Msa0569930:three_prime_UTR
GCCACCACCAATATTGGTGT+GGG 0.603981 4_1:-71969753 Msa0569930:CDS
CACATCCAAGAGCAGGAACA+CGG 0.605645 4_1:+71970231 None:intergenic
GCCAAGTCTGAAATGAAAGT+GGG 0.608379 4_1:+71970206 None:intergenic
CATTGTGTGGAGGGTAGCGT+AGG 0.610033 4_1:+71969581 None:intergenic
TGATATTCTTCAGCGCACAT+GGG 0.611904 4_1:-71971123 Msa0569930:CDS
GTAGAGTTGGACCTGTGGAA+TGG 0.613496 4_1:-71970518 Msa0569930:CDS
ATGCTTTAGATACATACAAG+AGG 0.615273 4_1:+71969409 None:intergenic
TCCAGTTGCGTATGTCGAAG+AGG 0.617127 4_1:-71971098 Msa0569930:CDS
TAAATTCCATTGCCATTGTG+TGG 0.618104 4_1:+71969568 None:intergenic
ATAAGGGCAATATTCCCCAC+TGG 0.625224 4_1:+71969624 None:intergenic
GGAAGCAAACAAAATGAGCA+AGG 0.626950 4_1:+71969247 None:intergenic
TTGGGTTTAAAAGTGAAAGG+GGG 0.627486 4_1:-71973627 Msa0569930:CDS
CTGGTCGAAATTGAAAATTG+TGG 0.628745 4_1:+71972298 None:intergenic
CTGATGTTACCTAATTGGTA+CGG 0.629091 4_1:+71970431 None:intergenic
GAATCTGGAATAGAAAATTG+GGG 0.630181 4_1:-71970254 Msa0569930:CDS
TCCATACAAAGCAGAGATGG+AGG 0.634295 4_1:-71971068 Msa0569930:CDS
TGAAGGATACATAAAGGCAA+TGG 0.635320 4_1:-71972093 Msa0569930:CDS
ATTGAGAGTCTCCCATATGT+TGG 0.638627 4_1:-71970173 Msa0569930:CDS
AGCACACGGTAATACCTTCG+TGG 0.647603 4_1:-71972124 Msa0569930:CDS
AAGTCTCTCATAAGTTCACA+AGG 0.649637 4_1:+71969327 None:intergenic
GCTTTGCAATCCTCACATCA+CGG 0.651183 4_1:+71973401 None:intergenic
GATATTCTTCAGCGCACATG+GGG 0.656107 4_1:-71971122 Msa0569930:CDS
TTGTTGATGACCGTGATGTG+AGG 0.656454 4_1:-71973411 Msa0569930:CDS
ATAAGCAAGTGTGTATGCAT+TGG 0.657766 4_1:+71971000 None:intergenic
TTTCCAATGGGTAGAGAACG+AGG 0.660101 4_1:-71973440 Msa0569930:CDS
CAGCATATGACTCACAACGT+AGG 0.661889 4_1:-71969781 Msa0569930:CDS
ACAGAGTAGAGTTGGACCTG+TGG 0.666508 4_1:-71970523 Msa0569930:intron
CCTTCGTGGTACCAACGTGA+AGG 0.674862 4_1:-71972110 Msa0569930:CDS
CTACGCTACCCTCCACACAA+TGG 0.678177 4_1:-71969580 Msa0569930:three_prime_UTR
TCTAGTCAACATGCAGCACA+CGG 0.678864 4_1:-71972138 Msa0569930:CDS
AACTCTTCTACACTGCCCAG+GGG 0.707896 4_1:+71969809 None:intergenic
CCTTCACGTTGGTACCACGA+AGG 0.743481 4_1:+71972110 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTAGAAAAAGTAAT+TGG - chr4_1:71970097-71970116 Msa0569930:intron 10.0%
!! ATAAAATAAATTGACATATT+TGG + chr4_1:71970123-71970142 None:intergenic 10.0%
!!! AAGAACTTTTTAAAAAAAAA+TGG - chr4_1:71970186-71970205 Msa0569930:CDS 10.0%
!! ATTATATTATATTATATGAC+TGG - chr4_1:71973659-71973678 Msa0569930:CDS 10.0%
!! ATACTTTGCATATAATAAAA+AGG - chr4_1:71969879-71969898 Msa0569930:intron 15.0%
!! ATCGTAATAATATATTAGAT+TGG - chr4_1:71970215-71970234 Msa0569930:CDS 15.0%
!!! TTGATAATATACAAATGTTT+AGG + chr4_1:71970835-71970854 None:intergenic 15.0%
!! AAATTTCAGCAAAAAATTAT+TGG + chr4_1:71971101-71971120 None:intergenic 15.0%
!!! TACTTTTTTGTTAGAAATTT+GGG - chr4_1:71971841-71971860 Msa0569930:intron 15.0%
!! ATAATGAATTGTTAGAAATT+TGG + chr4_1:71972262-71972281 None:intergenic 15.0%
!!! TCATTTATATTTTTGTATTG+TGG - chr4_1:71972714-71972733 Msa0569930:intron 15.0%
!!! TATCTAAAGCATTTTTATTT+GGG - chr4_1:71973416-71973435 Msa0569930:CDS 15.0%
!! ATTTATGCAAACAACATTAA+AGG - chr4_1:71970160-71970179 Msa0569930:CDS 20.0%
!! CAAAATTTACACATTCAAAA+TGG + chr4_1:71970253-71970272 None:intergenic 20.0%
!!! TGTGTAAATTTTGTATTTCT+TGG - chr4_1:71970260-71970279 Msa0569930:CDS 20.0%
!!! GTGTAAATTTTGTATTTCTT+GGG - chr4_1:71970261-71970280 Msa0569930:CDS 20.0%
!! AGTTTATTCAAGAAGATAAT+TGG + chr4_1:71970327-71970346 None:intergenic 20.0%
!! TTTAATCTACATGATTTCAA+AGG + chr4_1:71970457-71970476 None:intergenic 20.0%
!! TTGAAATCATGTAGATTAAA+AGG - chr4_1:71970457-71970476 Msa0569930:CDS 20.0%
!! TGAAATCATGTAGATTAAAA+GGG - chr4_1:71970458-71970477 Msa0569930:CDS 20.0%
!!! GAATATTTTATAGTAATCAC+CGG + chr4_1:71970575-71970594 None:intergenic 20.0%
!! CCAATTTATTATCTAACTTT+CGG - chr4_1:71970615-71970634 Msa0569930:intron 20.0%
!! TTAATTGAAAATGAGCTAAA+AGG - chr4_1:71970749-71970768 Msa0569930:intron 20.0%
!!! TTTTGAAAAGAATCTATGTT+TGG - chr4_1:71971393-71971412 Msa0569930:intron 20.0%
!! ATAAATAACACTATCACATT+AGG - chr4_1:71971466-71971485 Msa0569930:intron 20.0%
!! AACATCAATAATATTTGAGA+AGG - chr4_1:71971544-71971563 Msa0569930:intron 20.0%
!!! GTACTTTTTTGTTAGAAATT+TGG - chr4_1:71971840-71971859 Msa0569930:intron 20.0%
!! ATTGTTAGAAATTTGGAAAA+AGG + chr4_1:71972255-71972274 None:intergenic 20.0%
!!! TTATATTTTTGTATTGTGGA+AGG - chr4_1:71972718-71972737 Msa0569930:intron 20.0%
!! TCTAAAAAAATATGCTGATA+TGG + chr4_1:71972884-71972903 None:intergenic 20.0%
!!! GTATCTAAAGCATTTTTATT+TGG - chr4_1:71973415-71973434 Msa0569930:CDS 20.0%
!! AAAAGAGATAGAGTTTAAAA+AGG - chr4_1:71973534-71973553 Msa0569930:CDS 20.0%
!! AAAGAGATAGAGTTTAAAAA+GGG - chr4_1:71973535-71973554 Msa0569930:CDS 20.0%
!! AATTTGGGTTTAAAAGTGAA+AGG - chr4_1:71969184-71969203 Msa0569930:three_prime_UTR 25.0%
!! ATTTGGGTTTAAAAGTGAAA+GGG - chr4_1:71969185-71969204 Msa0569930:three_prime_UTR 25.0%
!! AAAACTTTTCACCATAGTTA+GGG + chr4_1:71969308-71969327 None:intergenic 25.0%
!! TAACTATGGTGAAAAGTTTT+GGG - chr4_1:71969308-71969327 Msa0569930:three_prime_UTR 25.0%
! GTTGAAGTTATTGAATGTAA+TGG - chr4_1:71969764-71969783 Msa0569930:CDS 25.0%
!!! TTACAAGCTTGTTATATCAA+CGG + chr4_1:71969852-71969871 None:intergenic 25.0%
! TCTTGAATAAACTTTAACCT+TGG - chr4_1:71970334-71970353 Msa0569930:intron 25.0%
! CATGATTTCAAAGGAAAAAT+TGG + chr4_1:71970448-71970467 None:intergenic 25.0%
! ATTGAAAATTGTGGATAAAG+TGG + chr4_1:71970510-71970529 None:intergenic 25.0%
! CCGAAAGTTAGATAATAAAT+TGG + chr4_1:71970618-71970637 None:intergenic 25.0%
! TTCGGTTGTGAATTATTTAT+TGG - chr4_1:71970633-71970652 Msa0569930:intron 25.0%
! TTACTCTGTTTGATTAACTT+AGG - chr4_1:71970951-71970970 Msa0569930:intron 25.0%
! TTTGATTAACTTAGGCAATT+GGG - chr4_1:71970959-71970978 Msa0569930:intron 25.0%
!! CAACTTCGTTTATCTTTTAT+AGG - chr4_1:71971024-71971043 Msa0569930:CDS 25.0%
!! TATAGGTTTCGTTGTATTTT+TGG - chr4_1:71971041-71971060 Msa0569930:CDS 25.0%
! TTTCAGCAAAAAATTATTGG+CGG + chr4_1:71971098-71971117 None:intergenic 25.0%
! GTAGCAATTGAAAAAATCAA+GGG + chr4_1:71971127-71971146 None:intergenic 25.0%
! TGTAGCAATTGAAAAAATCA+AGG + chr4_1:71971128-71971147 None:intergenic 25.0%
! ATATTAGGAATAGAAAATGG+TGG + chr4_1:71971195-71971214 None:intergenic 25.0%
! CGAATATTAGGAATAGAAAA+TGG + chr4_1:71971198-71971217 None:intergenic 25.0%
!!! TGGTTTAATTTGCGAATATT+AGG + chr4_1:71971210-71971229 None:intergenic 25.0%
! TAAACATTATACCATAAGCT+TGG + chr4_1:71971919-71971938 None:intergenic 25.0%
! ACAAACTGTTCAGAATATTA+TGG + chr4_1:71972003-71972022 None:intergenic 25.0%
! ATTATTGTCTCATCTGTATA+GGG + chr4_1:71972328-71972347 None:intergenic 25.0%
! AATTATTGTCTCATCTGTAT+AGG + chr4_1:71972329-71972348 None:intergenic 25.0%
! ATGAGACAATAATTGAACTT+GGG - chr4_1:71972335-71972354 Msa0569930:CDS 25.0%
! AATAATTGAACTTGGGAAAA+AGG - chr4_1:71972342-71972361 Msa0569930:CDS 25.0%
! ATAATTGAACTTGGGAAAAA+GGG - chr4_1:71972343-71972362 Msa0569930:CDS 25.0%
!! TAGAATCTGGAATAGAAAAT+TGG - chr4_1:71972558-71972577 Msa0569930:intron 25.0%
!! AGAATCTGGAATAGAAAATT+GGG - chr4_1:71972559-71972578 Msa0569930:intron 25.0%
!! TGTGATCTAACAAAAAGTTT+TGG - chr4_1:71972962-71972981 Msa0569930:intron 25.0%
!! ATTCAAGTTCACCTAAATAA+GGG + chr4_1:71973209-71973228 None:intergenic 25.0%
!! TATTCAAGTTCACCTAAATA+AGG + chr4_1:71973210-71973229 None:intergenic 25.0%
! TTTGGGTTTAAAAGTGAAAG+GGG - chr4_1:71969186-71969205 Msa0569930:three_prime_UTR 30.0%
! CAAAACTTTTCACCATAGTT+AGG + chr4_1:71969309-71969328 None:intergenic 30.0%
! CTAACTATGGTGAAAAGTTT+TGG - chr4_1:71969307-71969326 Msa0569930:three_prime_UTR 30.0%
! AACTATGGTGAAAAGTTTTG+GGG - chr4_1:71969309-71969328 Msa0569930:three_prime_UTR 30.0%
!! GCATGAAATTTGTTGTCTAA+AGG - chr4_1:71969461-71969480 Msa0569930:three_prime_UTR 30.0%
AAATGTTGCAAGATTGCTAT+AGG - chr4_1:71969504-71969523 Msa0569930:three_prime_UTR 30.0%
AAGGAAAAATTGGTCATGAT+TGG + chr4_1:71970438-71970457 None:intergenic 30.0%
ATCATGTAGATTAAAAGGGA+TGG - chr4_1:71970462-71970481 Msa0569930:CDS 30.0%
TAGTCAGTATCAGATATTTC+TGG - chr4_1:71970895-71970914 Msa0569930:intron 30.0%
!! AGTATCAGATATTTCTGGTT+AGG - chr4_1:71970900-71970919 Msa0569930:intron 30.0%
GTTTGATTAACTTAGGCAAT+TGG - chr4_1:71970958-71970977 Msa0569930:intron 30.0%
!!! TATTTTTGGTCCTGCTATTA+TGG - chr4_1:71971055-71971074 Msa0569930:CDS 30.0%
TTCAGCAAAAAATTATTGGC+GGG + chr4_1:71971097-71971116 None:intergenic 30.0%
AAAAAGCTAATGAAAGGAGT+TGG + chr4_1:71971152-71971171 None:intergenic 30.0%
GATGGAAAAAAGCTAATGAA+AGG + chr4_1:71971158-71971177 None:intergenic 30.0%
GTGGATTTGAATATTTCAGA+TGG + chr4_1:71971176-71971195 None:intergenic 30.0%
! GTGAGGTTAAATTTTCAAAG+AGG + chr4_1:71971315-71971334 None:intergenic 30.0%
TGCAACAAAAATTAGTCACT+AGG + chr4_1:71971666-71971685 None:intergenic 30.0%
! TAGTGACTAATTTTTGTTGC+AGG - chr4_1:71971665-71971684 Msa0569930:intron 30.0%
! TTAATACTTCTAGAAACCGA+GGG + chr4_1:71971868-71971887 None:intergenic 30.0%
! ATTAATACTTCTAGAAACCG+AGG + chr4_1:71971869-71971888 None:intergenic 30.0%
!! ATATTATGGCCTTGTTGATA+GGG + chr4_1:71971989-71972008 None:intergenic 30.0%
!! AATATTATGGCCTTGTTGAT+AGG + chr4_1:71971990-71972009 None:intergenic 30.0%
GATGAGACAATAATTGAACT+TGG - chr4_1:71972334-71972353 Msa0569930:CDS 30.0%
GGTTGAGTGATACTAATATT+TGG - chr4_1:71972449-71972468 Msa0569930:intron 30.0%
TGATGTTGAGTACAAAGAAT+TGG - chr4_1:71972532-71972551 Msa0569930:intron 30.0%
!! AAAGAATTGGCTTTAGAATC+TGG - chr4_1:71972545-71972564 Msa0569930:intron 30.0%
! GAATCTGGAATAGAAAATTG+GGG - chr4_1:71972560-71972579 Msa0569930:intron 30.0%
TGCTAATGGTATACATATAC+AGG + chr4_1:71973278-71973297 None:intergenic 30.0%
! ATGCTTTAGATACATACAAG+AGG + chr4_1:71973408-71973427 None:intergenic 30.0%
!!! TTCAGACTTGGTTTTGTTTT+TGG - chr4_1:71973618-71973637 Msa0569930:CDS 30.0%
TTGGGTTTAAAAGTGAAAGG+GGG - chr4_1:71969187-71969206 Msa0569930:three_prime_UTR 35.0%
CGAATTCGAAAATGTTCATG+TGG - chr4_1:71969243-71969262 Msa0569930:three_prime_UTR 35.0%
! ATGTTCATGTGGTGAGTTTT+TGG - chr4_1:71969254-71969273 Msa0569930:three_prime_UTR 35.0%
GATGAAAGTAACCCTAACTA+TGG - chr4_1:71969294-71969313 Msa0569930:three_prime_UTR 35.0%
GCAAAGCAGAAGAAGAAAAA+TGG - chr4_1:71969429-71969448 Msa0569930:three_prime_UTR 35.0%
!!! TGTTAGTTTTGGGTTGAACT+TGG - chr4_1:71969536-71969555 Msa0569930:three_prime_UTR 35.0%
! GTATGTGTCTTTAGTGTTGA+AGG - chr4_1:71969630-71969649 Msa0569930:CDS 35.0%
! TTTAGTGCTGAAGGTAGTAT+GGG - chr4_1:71969666-71969685 Msa0569930:CDS 35.0%
CTGGTCGAAATTGAAAATTG+TGG + chr4_1:71970519-71970538 None:intergenic 35.0%
! CAATTTTCAATTTCGACCAG+TGG - chr4_1:71970519-71970538 Msa0569930:CDS 35.0%
CTAGATACTCATCTTCTCTA+AGG + chr4_1:71970661-71970680 None:intergenic 35.0%
TGAAGGATACATAAAGGCAA+TGG - chr4_1:71970721-71970740 Msa0569930:intron 35.0%
AAATGAAGTAGTACCTTCTC+TGG + chr4_1:71970785-71970804 None:intergenic 35.0%
TCAGATATGACCATAATAGC+AGG + chr4_1:71971068-71971087 None:intergenic 35.0%
TCAGCAAAAAATTATTGGCG+GGG + chr4_1:71971096-71971115 None:intergenic 35.0%
! CAGGGTTAAAAAGGTACATT+TGG + chr4_1:71971230-71971249 None:intergenic 35.0%
CAACTTTCACCCAAAATTGT+GGG - chr4_1:71971272-71971291 Msa0569930:intron 35.0%
AACTTTCACCCAAAATTGTG+GGG - chr4_1:71971273-71971292 Msa0569930:intron 35.0%
! TCAAGATTCCCCACAATTTT+GGG + chr4_1:71971284-71971303 None:intergenic 35.0%
! TTCAAGATTCCCCACAATTT+TGG + chr4_1:71971285-71971304 None:intergenic 35.0%
AATTGTGGGGAATCTTGAAA+AGG - chr4_1:71971286-71971305 Msa0569930:intron 35.0%
ACTAATTTAGCGACACTTGA+AGG + chr4_1:71971341-71971360 None:intergenic 35.0%
TTGAGAATTTGTGCAATGCT+CGG - chr4_1:71971362-71971381 Msa0569930:intron 35.0%
CGAGTTTCGGAAAAACTTTA+TGG + chr4_1:71971580-71971599 None:intergenic 35.0%
ATAAGCAAGTGTGTATGCAT+TGG + chr4_1:71971817-71971836 None:intergenic 35.0%
TACTTTGGTGAATACCATAC+TGG + chr4_1:71971953-71971972 None:intergenic 35.0%
GTATTCACCAAAGTAGCAAT+TGG - chr4_1:71971958-71971977 Msa0569930:intron 35.0%
! GGAAATACCAATTGCTACTT+TGG + chr4_1:71971968-71971987 None:intergenic 35.0%
TTGGTATTTCCCTATCAACA+AGG - chr4_1:71971977-71971996 Msa0569930:intron 35.0%
CGTTTAGTCATCAAGTCAAT+AGG - chr4_1:71972140-71972159 Msa0569930:CDS 35.0%
TTAGTCATCAAGTCAATAGG+TGG - chr4_1:71972143-71972162 Msa0569930:CDS 35.0%
! TAAAAGCAGTTGCCACATTT+TGG + chr4_1:71972225-71972244 None:intergenic 35.0%
ATGCTTATACAGAGTAGAGT+TGG - chr4_1:71972283-71972302 Msa0569930:CDS 35.0%
AAAGGGAGTAAAAAGTTTGC+TGG - chr4_1:71972360-71972379 Msa0569930:intron 35.0%
CTGATGTTACCTAATTGGTA+CGG + chr4_1:71972386-71972405 None:intergenic 35.0%
CAAAGCTGATGTTACCTAAT+TGG + chr4_1:71972391-71972410 None:intergenic 35.0%
! ACATGTGTGTATCCTTTTTC+CGG + chr4_1:71972852-71972871 None:intergenic 35.0%
!! TTTGGTTTGTTGACAGTCTT+TGG - chr4_1:71972980-71972999 Msa0569930:intron 35.0%
!!! TTGTTTTTAGAAGTCACCAC+TGG - chr4_1:71973152-71973171 Msa0569930:intron 35.0%
TAAATTCCATTGCCATTGTG+TGG + chr4_1:71973249-71973268 None:intergenic 35.0%
TAGTTTAGACACAGCATTTG+TGG - chr4_1:71973351-71973370 Msa0569930:CDS 35.0%
AAGTCTCTCATAAGTTCACA+AGG + chr4_1:71973490-71973509 None:intergenic 35.0%
AAAAGTGAAAGGGGGTTATC+TGG - chr4_1:71969195-71969214 Msa0569930:three_prime_UTR 40.0%
AGGATGAGTTGTTTAGCAGT+AGG - chr4_1:71969481-71969500 Msa0569930:three_prime_UTR 40.0%
!!! GCTTTGCCACTGTTAGTTTT+GGG - chr4_1:71969526-71969545 Msa0569930:three_prime_UTR 40.0%
GTTCAACCCAAAACTAACAG+TGG + chr4_1:71969535-71969554 None:intergenic 40.0%
! CTTTAGTGCTGAAGGTAGTA+TGG - chr4_1:71969665-71969684 Msa0569930:CDS 40.0%
! GTAGTATGGGAGTGCAATTA+AGG - chr4_1:71969679-71969698 Msa0569930:CDS 40.0%
TTAACCTTGGAACAGACTCA+TGG - chr4_1:71970347-71970366 Msa0569930:intron 40.0%
TAACCTTGGAACAGACTCAT+GGG - chr4_1:71970348-71970367 Msa0569930:intron 40.0%
CCTTTATGTATCCTTCACGT+TGG + chr4_1:71970718-71970737 None:intergenic 40.0%
CCAACGTGAAGGATACATAA+AGG - chr4_1:71970715-71970734 Msa0569930:intron 40.0%
!!! AGGTTTTGACTTACCAGAGA+AGG - chr4_1:71970769-71970788 Msa0569930:intron 40.0%
! CTTTTTAACCCTGTTCCACT+CGG - chr4_1:71971237-71971256 Msa0569930:intron 40.0%
TTTAAATGCCGAGTGGAACA+GGG + chr4_1:71971248-71971267 None:intergenic 40.0%
! TTTTAAATGCCGAGTGGAAC+AGG + chr4_1:71971249-71971268 None:intergenic 40.0%
!! CCACAATTTTGGGTGAAAGT+TGG + chr4_1:71971274-71971293 None:intergenic 40.0%
CCAACTTTCACCCAAAATTG+TGG - chr4_1:71971271-71971290 Msa0569930:intron 40.0%
TGAGAATTTGTGCAATGCTC+GGG - chr4_1:71971363-71971382 Msa0569930:intron 40.0%
CTTATAAGGAGCTCGAGTTT+CGG + chr4_1:71971593-71971612 None:intergenic 40.0%
TCGAGCTCCTTATAAGCTTA+AGG - chr4_1:71971597-71971616 Msa0569930:intron 40.0%
GCTCCTTATAAGCTTAAGGT+TGG - chr4_1:71971601-71971620 Msa0569930:intron 40.0%
CCACCAACCTTAAGCTTATA+AGG + chr4_1:71971607-71971626 None:intergenic 40.0%
CCTTATAAGCTTAAGGTTGG+TGG - chr4_1:71971604-71971623 Msa0569930:intron 40.0%
!! ATAAGCTTAAGGTTGGTGGT+TGG - chr4_1:71971608-71971627 Msa0569930:intron 40.0%
!! TAAGCTTAAGGTTGGTGGTT+GGG - chr4_1:71971609-71971628 Msa0569930:intron 40.0%
ATGATATTCTTCAGCGCACA+TGG - chr4_1:71971690-71971709 Msa0569930:intron 40.0%
TGATATTCTTCAGCGCACAT+GGG - chr4_1:71971691-71971710 Msa0569930:intron 40.0%
TGATCCATACAAAGCAGAGA+TGG - chr4_1:71971743-71971762 Msa0569930:intron 40.0%
GGAGTGTGTGGATTTAATCA+TGG - chr4_1:71971767-71971786 Msa0569930:intron 40.0%
TGCATACACACTTGCTTATC+AGG - chr4_1:71971818-71971837 Msa0569930:intron 40.0%
! TGTTAGAAATTTGGGACCCT+CGG - chr4_1:71971849-71971868 Msa0569930:intron 40.0%
!! TTACCTTAGTTCTGCCAGTA+TGG - chr4_1:71971936-71971955 Msa0569930:intron 40.0%
ATACCATACTGGCAGAACTA+AGG + chr4_1:71971942-71971961 None:intergenic 40.0%
TAGTCTTTGCATGGTTCTTC+GGG + chr4_1:71972094-71972113 None:intergenic 40.0%
GTAGTCTTTGCATGGTTCTT+CGG + chr4_1:71972095-71972114 None:intergenic 40.0%
TGATGACTAAACGTAGTCCT+CGG + chr4_1:71972133-71972152 None:intergenic 40.0%
!! TAGGGTTTTAACCATTCCAC+AGG + chr4_1:71972310-71972329 None:intergenic 40.0%
AAAGCTGTGAGTGCATAAAG+AGG + chr4_1:71972480-71972499 None:intergenic 40.0%
ACCCACTTTCATTTCAGACT+TGG - chr4_1:71972607-71972626 Msa0569930:intron 40.0%
! GCCAAGTCTGAAATGAAAGT+GGG + chr4_1:71972611-71972630 None:intergenic 40.0%
! TGCCAAGTCTGAAATGAAAG+TGG + chr4_1:71972612-71972631 None:intergenic 40.0%
ATTGAGAGTCTCCCATATGT+TGG - chr4_1:71972641-71972660 Msa0569930:intron 40.0%
TCGAGCTTCAAGGTTTGAAA+CGG + chr4_1:71972675-71972694 None:intergenic 40.0%
GACAATGACATTTGACAACG+TGG + chr4_1:71972770-71972789 None:intergenic 40.0%
AGCATATGACTCACAACGTA+GGG - chr4_1:71973034-71973053 Msa0569930:intron 40.0%
ACCAATATTGGTGTGGGAAT+GGG - chr4_1:71973067-71973086 Msa0569930:intron 40.0%
!! AAGAGTGCTGAAACTTGGAA+TGG - chr4_1:71973098-71973117 Msa0569930:intron 40.0%
! GGGGAATATTGCCCTTATTT+AGG - chr4_1:71973195-71973214 Msa0569930:intron 40.0%
AGCAGCATATGTGATGCTAA+TGG + chr4_1:71973292-71973311 None:intergenic 40.0%
ATCGAAGTCATGCACTAAGA+AGG - chr4_1:71973316-71973335 Msa0569930:CDS 40.0%
TTAGACACAGCATTTGTGGA+TGG - chr4_1:71973355-71973374 Msa0569930:CDS 40.0%
GGAAGCAAACAAAATGAGCA+AGG + chr4_1:71973570-71973589 None:intergenic 40.0%
!! TGCTCATTTTGTTTGCTTCC+CGG - chr4_1:71973570-71973589 Msa0569930:CDS 40.0%
! TGTCAACAACACAAGAGTAC+TGG - chr4_1:71973595-71973614 Msa0569930:CDS 40.0%
GCAGAAGCAGCAACGAATTT+GGG - chr4_1:71969169-71969188 Msa0569930:three_prime_UTR 45.0%
TTATCTGGATCTGTGGGTTC+TGG - chr4_1:71969210-71969229 Msa0569930:three_prime_UTR 45.0%
!!! GTGAAAAGTTTTGGGGCTGT+AGG - chr4_1:71969316-71969335 Msa0569930:three_prime_UTR 45.0%
!!! AGTTTTGGGGCTGTAGGAAT+TGG - chr4_1:71969322-71969341 Msa0569930:three_prime_UTR 45.0%
!! TGGAGGAACCGAGTTGATAA+TGG - chr4_1:71969342-71969361 Msa0569930:three_prime_UTR 45.0%
GGTTGCAGCCATTATCAACT+CGG + chr4_1:71969353-71969372 None:intergenic 45.0%
ATGGCTGCAACCATTTCCAA+TGG - chr4_1:71969361-71969380 Msa0569930:three_prime_UTR 45.0%
TGGCTGCAACCATTTCCAAT+GGG - chr4_1:71969362-71969381 Msa0569930:three_prime_UTR 45.0%
CGTTCTCTACCCATTGGAAA+TGG + chr4_1:71969374-71969393 None:intergenic 45.0%
TTTCCAATGGGTAGAGAACG+AGG - chr4_1:71969374-71969393 Msa0569930:three_prime_UTR 45.0%
!! TTGTTGATGACCGTGATGTG+AGG - chr4_1:71969403-71969422 Msa0569930:three_prime_UTR 45.0%
GCTTTGCAATCCTCACATCA+CGG + chr4_1:71969416-71969435 None:intergenic 45.0%
!! GGCTTTGCCACTGTTAGTTT+TGG - chr4_1:71969525-71969544 Msa0569930:three_prime_UTR 45.0%
! GTGTGTGTCTTTAGTGCTGA+AGG - chr4_1:71969657-71969676 Msa0569930:CDS 45.0%
TAACCCATGAGTCTGTTCCA+AGG + chr4_1:71970354-71970373 None:intergenic 45.0%
! TGGTTCAAGTTTGCGTCTCT+TGG - chr4_1:71970539-71970558 Msa0569930:intron 45.0%
! GTCTCTTGGAGAGCATATTC+CGG - chr4_1:71970553-71970572 Msa0569930:intron 45.0%
TCTAGTCAACATGCAGCACA+CGG - chr4_1:71970676-71970695 Msa0569930:intron 45.0%
CGAGTGGAACAGGGTTAAAA+AGG + chr4_1:71971239-71971258 None:intergenic 45.0%
!! TTGGCGTTTTAAATGCCGAG+TGG + chr4_1:71971255-71971274 None:intergenic 45.0%
GAGAATTTGTGCAATGCTCG+GGG - chr4_1:71971364-71971383 Msa0569930:intron 45.0%
GATATTCTTCAGCGCACATG+GGG - chr4_1:71971692-71971711 Msa0569930:intron 45.0%
TCCATACAAAGCAGAGATGG+AGG - chr4_1:71971746-71971765 Msa0569930:intron 45.0%
TCCTCCATCTCTGCTTTGTA+TGG + chr4_1:71971750-71971769 None:intergenic 45.0%
AGTGCGCAAATCCAAGCTTA+TGG - chr4_1:71971905-71971924 Msa0569930:intron 45.0%
GCTGTTGAGTAGTCTTTGCA+TGG + chr4_1:71972103-71972122 None:intergenic 45.0%
TTGTACCACCAATCTCCCTA+TGG - chr4_1:71972199-71972218 Msa0569930:intron 45.0%
!! CATTTTGGCCATAGGGAGAT+TGG + chr4_1:71972210-71972229 None:intergenic 45.0%
ATCTCCCTATGGCCAAAATG+TGG - chr4_1:71972210-71972229 Msa0569930:intron 45.0%
!! GTTGCCACATTTTGGCCATA+GGG + chr4_1:71972217-71972236 None:intergenic 45.0%
!! AGTTGCCACATTTTGGCCAT+AGG + chr4_1:71972218-71972237 None:intergenic 45.0%
AGTATCACTCAACCTAGTGC+AGG + chr4_1:71972443-71972462 None:intergenic 45.0%
TTCAAACCTTGAAGCTCGAC+AGG - chr4_1:71972676-71972695 Msa0569930:intron 45.0%
TAACTCTTCTACACTGCCCA+GGG + chr4_1:71973009-71973028 None:intergenic 45.0%
ATAACTCTTCTACACTGCCC+AGG + chr4_1:71973010-71973029 None:intergenic 45.0%
GGGCAGTGTAGAAGAGTTAT+TGG - chr4_1:71973010-71973029 Msa0569930:intron 45.0%
CAGCATATGACTCACAACGT+AGG - chr4_1:71973033-71973052 Msa0569930:intron 45.0%
CATTCCCACACCAATATTGG+TGG + chr4_1:71973068-71973087 None:intergenic 45.0%
CACCAATATTGGTGTGGGAA+TGG - chr4_1:71973066-71973085 Msa0569930:intron 45.0%
CCAATATTGGTGTGGGAATG+GGG - chr4_1:71973068-71973087 Msa0569930:intron 45.0%
!! GGACAAAGAGTGCTGAAACT+TGG - chr4_1:71973093-71973112 Msa0569930:intron 45.0%
TTTAGAAGTCACCACTGGAG+AGG - chr4_1:71973157-71973176 Msa0569930:intron 45.0%
TTAGAAGTCACCACTGGAGA+GGG - chr4_1:71973158-71973177 Msa0569930:intron 45.0%
! AGAGGGATTTTTGCACCAGT+GGG - chr4_1:71973175-71973194 Msa0569930:intron 45.0%
ATAAGGGCAATATTCCCCAC+TGG + chr4_1:71973193-71973212 None:intergenic 45.0%
TTCCATTGCCATTGTGTGGA+GGG + chr4_1:71973245-71973264 None:intergenic 45.0%
ATTCCATTGCCATTGTGTGG+AGG + chr4_1:71973246-71973265 None:intergenic 45.0%
! TCTTGTGTTGTTGACAAGCC+GGG + chr4_1:71973591-71973610 None:intergenic 45.0%
! CTCTTGTGTTGTTGACAAGC+CGG + chr4_1:71973592-71973611 None:intergenic 45.0%
!! CAAGAGTACTGGTTCAGACT+TGG - chr4_1:71973606-71973625 Msa0569930:CDS 45.0%
CGCAGAAGCAGCAACGAATT+TGG - chr4_1:71969168-71969187 Msa0569930:three_prime_UTR 50.0%
AAGGGGGTTATCTGGATCTG+TGG - chr4_1:71969203-71969222 Msa0569930:three_prime_UTR 50.0%
AGGGGGTTATCTGGATCTGT+GGG - chr4_1:71969204-71969223 Msa0569930:three_prime_UTR 50.0%
! TTTGGGGCTGTAGGAATTGG+AGG - chr4_1:71969325-71969344 Msa0569930:three_prime_UTR 50.0%
CATCCTCGTTCTCTACCCAT+TGG + chr4_1:71969380-71969399 None:intergenic 50.0%
GAGACGCAAACTTGAACCAC+TGG + chr4_1:71970538-71970557 None:intergenic 50.0%
AGCACACGGTAATACCTTCG+TGG - chr4_1:71970690-71970709 Msa0569930:intron 50.0%
TCCAGTTGCGTATGTCGAAG+AGG - chr4_1:71971716-71971735 Msa0569930:intron 50.0%
TTTGGCCATAGGGAGATTGG+TGG + chr4_1:71972207-71972226 None:intergenic 50.0%
ACAGAGTAGAGTTGGACCTG+TGG - chr4_1:71972291-71972310 Msa0569930:CDS 50.0%
GTAGAGTTGGACCTGTGGAA+TGG - chr4_1:71972296-71972315 Msa0569930:CDS 50.0%
! GTTTGCTGGCCGTACCAATT+AGG - chr4_1:71972374-71972393 Msa0569930:intron 50.0%
ATTCCTCTCTGACCTGCACT+AGG - chr4_1:71972428-71972447 Msa0569930:intron 50.0%
CACATCCAAGAGCAGGAACA+CGG + chr4_1:71972586-71972605 None:intergenic 50.0%
TCTCCCATATGTTGGTGCGA+TGG - chr4_1:71972649-71972668 Msa0569930:intron 50.0%
!! AGCGATTAGTCTCCGACTCT+TGG - chr4_1:71972799-71972818 Msa0569930:intron 50.0%
! ATTAGTCTCCGACTCTTGGC+CGG - chr4_1:71972803-71972822 Msa0569930:intron 50.0%
CTCAGGGTTATCCTTATCCC+CGG + chr4_1:71972825-71972844 None:intergenic 50.0%
AAGGATAACCCTGAGCTCAC+CGG - chr4_1:71972830-71972849 Msa0569930:intron 50.0%
! TCCTTTTTCCGGTGAGCTCA+GGG + chr4_1:71972841-71972860 None:intergenic 50.0%
! ATCCTTTTTCCGGTGAGCTC+AGG + chr4_1:71972842-71972861 None:intergenic 50.0%
! TTGACAGTCTTTGGTTCCCC+TGG - chr4_1:71972989-71973008 Msa0569930:intron 50.0%
! TGACAGTCTTTGGTTCCCCT+GGG - chr4_1:71972990-71973009 Msa0569930:intron 50.0%
AACTCTTCTACACTGCCCAG+GGG + chr4_1:71973008-71973027 None:intergenic 50.0%
GGAGTTGCCACCACCAATAT+TGG - chr4_1:71973055-71973074 Msa0569930:intron 50.0%
TGCCACCACCAATATTGGTG+TGG - chr4_1:71973060-71973079 Msa0569930:intron 50.0%
GCCACCACCAATATTGGTGT+GGG - chr4_1:71973061-71973080 Msa0569930:intron 50.0%
TCCCACACCAATATTGGTGG+TGG + chr4_1:71973065-71973084 None:intergenic 50.0%
CCCCATTCCCACACCAATAT+TGG + chr4_1:71973071-71973090 None:intergenic 50.0%
TATTGGTGTGGGAATGGGGA+TGG - chr4_1:71973072-71973091 Msa0569930:intron 50.0%
GTGCAAAAATCCCTCTCCAG+TGG + chr4_1:71973171-71973190 None:intergenic 50.0%
! GAGAGGGATTTTTGCACCAG+TGG - chr4_1:71973174-71973193 Msa0569930:intron 50.0%
! GAGGGATTTTTGCACCAGTG+GGG - chr4_1:71973176-71973195 Msa0569930:intron 50.0%
TACCCTCCACACAATGGCAA+TGG - chr4_1:71973240-71973259 Msa0569930:intron 50.0%
CCTTCACGTTGGTACCACGA+AGG + chr4_1:71970707-71970726 None:intergenic 55.0%
CCTTCGTGGTACCAACGTGA+AGG - chr4_1:71970704-71970723 Msa0569930:intron 55.0%
GCGACACTTGAAGGCTTGTG+AGG + chr4_1:71971332-71971351 None:intergenic 55.0%
GCCTCTTCGACATACGCAAC+TGG + chr4_1:71971720-71971739 None:intergenic 55.0%
GTTGCGTATGTCGAAGAGGC+TGG - chr4_1:71971720-71971739 Msa0569930:intron 55.0%
! AGCAGAGATGGAGGAGTGTG+TGG - chr4_1:71971755-71971774 Msa0569930:intron 55.0%
CAACCTAGTGCAGGTCAGAG+AGG + chr4_1:71972434-71972453 None:intergenic 55.0%
GTGGGTTCACATCCAAGAGC+AGG + chr4_1:71972593-71972612 None:intergenic 55.0%
CGGCCATCGCACCAACATAT+GGG + chr4_1:71972655-71972674 None:intergenic 55.0%
ACGGCCATCGCACCAACATA+TGG + chr4_1:71972656-71972675 None:intergenic 55.0%
AGCGTACCTGTCGAGCTTCA+AGG + chr4_1:71972685-71972704 None:intergenic 55.0%
AGTCGGAGACTAATCGCTCG+AGG + chr4_1:71972797-71972816 None:intergenic 55.0%
TTAGTCTCCGACTCTTGGCC+GGG - chr4_1:71972804-71972823 Msa0569930:intron 55.0%
ACCCTGAGCTCACCGGAAAA+AGG - chr4_1:71972837-71972856 Msa0569930:intron 55.0%
CATTGTGTGGAGGGTAGCGT+AGG + chr4_1:71973236-71973255 None:intergenic 55.0%
CTACGCTACCCTCCACACAA+TGG - chr4_1:71973234-71973253 Msa0569930:intron 55.0%
ACTCAACAGCGTTCTCGCCG+AGG - chr4_1:71972113-71972132 Msa0569930:CDS 60.0%
TAGTCTCCGACTCTTGGCCG+GGG - chr4_1:71972805-71972824 Msa0569930:intron 60.0%
CCTTATCCCCGGCCAAGAGT+CGG + chr4_1:71972814-71972833 None:intergenic 60.0%
TGGGGCCGTGTTCCTGCTCT+TGG - chr4_1:71972578-71972597 Msa0569930:intron 65.0%
CCGACTCTTGGCCGGGGATA+AGG - chr4_1:71972811-71972830 Msa0569930:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 71969141 71973695 71969141 ID=Msa0569930;Name=Msa0569930
chr4_1 mRNA 71969141 71973695 71969141 ID=Msa0569930-mRNA-1;Parent=Msa0569930;Name=Msa0569930-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.83|0.71|1|1|1|7|475|435
chr4_1 exon 71969141 71969840 71969141 ID=Msa0569930-mRNA-1:exon:24529;Parent=Msa0569930-mRNA-1
chr4_1 exon 71970139 71970340 71970139 ID=Msa0569930-mRNA-1:exon:24528;Parent=Msa0569930-mRNA-1
chr4_1 exon 71970441 71970541 71970441 ID=Msa0569930-mRNA-1:exon:24527;Parent=Msa0569930-mRNA-1
chr4_1 exon 71970997 71971149 71970997 ID=Msa0569930-mRNA-1:exon:24526;Parent=Msa0569930-mRNA-1
chr4_1 exon 71972046 71972172 71972046 ID=Msa0569930-mRNA-1:exon:24525;Parent=Msa0569930-mRNA-1
chr4_1 exon 71972262 71972365 71972262 ID=Msa0569930-mRNA-1:exon:24524;Parent=Msa0569930-mRNA-1
chr4_1 exon 71973300 71973695 71973300 ID=Msa0569930-mRNA-1:exon:24523;Parent=Msa0569930-mRNA-1
chr4_1 CDS 71973300 71973695 71973300 ID=Msa0569930-mRNA-1:cds;Parent=Msa0569930-mRNA-1
chr4_1 CDS 71972262 71972365 71972262 ID=Msa0569930-mRNA-1:cds;Parent=Msa0569930-mRNA-1
chr4_1 CDS 71972046 71972172 71972046 ID=Msa0569930-mRNA-1:cds;Parent=Msa0569930-mRNA-1
chr4_1 CDS 71970997 71971149 71970997 ID=Msa0569930-mRNA-1:cds;Parent=Msa0569930-mRNA-1
chr4_1 CDS 71970441 71970541 71970441 ID=Msa0569930-mRNA-1:cds;Parent=Msa0569930-mRNA-1
chr4_1 CDS 71970139 71970340 71970139 ID=Msa0569930-mRNA-1:cds;Parent=Msa0569930-mRNA-1
chr4_1 CDS 71969616 71969840 71969616 ID=Msa0569930-mRNA-1:cds;Parent=Msa0569930-mRNA-1
chr4_1 three_prime_UTR 71969141 71969615 71969141 ID=Msa0569930-mRNA-1:three_prime_utr;Parent=Msa0569930-mRNA-1
Gene Sequence

>Msa0569930

ATGTCAAGTGCAACATCTCGTTTTAATCGCAGAAGCAGCAACGAATTTGGGTTTAAAAGTGAAAGGGGGTTATCTGGATCTGTGGGTTCTGGTGTTAGAAGACGAATTCGAAAATGTTCATGTGGTGAGTTTTTGGTTTTGAGAACTGTCACTGATGAAAGTAACCCTAACTATGGTGAAAAGTTTTGGGGCTGTAGGAATTGGAGGAACCGAGTTGATAATGGCTGCAACCATTTCCAATGGGTAGAGAACGAGGATGATGTTGTTGATGACCGTGATGTGAGGATTGCAAAGCAGAAGAAGAAAAATGGCAAGCTGAAGCATGAAATTTGTTGTCTAAAGGATGAGTTGTTTAGCAGTAGGAAATGTTGCAAGATTGCTATAGGCTTTGCCACTATTAAAAGGGATGGAATTACAAAGCTTGTTGTGCTTCCACTTTATCCACAATTTTCAATTTCGACCAGTGGTTCAAGTTTGCGTCTCTTGGAGAGCATATTCCGAGAAGATGAGTATCTAGTCAACATGCAGCACACGGTAATACCTTCGTGGTACCAACGTGAAGGATACATAAAGGCAATGGCAAATTTAATTGAAAATGAGCTAAAAGGTTTTGACTTACCAGAGAAGGTCATGATATTCTTCAGCGCACATGGGGTTCCAGTTGCGTATGTCGAAGAGGCTGGTGATCCATACAAAGCAGAGATGGAGGAGTGTGTGGATTTAATCATGGAAGAGCTTGAGAAAAGAAAGATAACCAATGCATACACACTTGCTTATCAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAATTGAACTTGGGAAAAAGGGAGTAAAAAGTTTGCTGGCCGTACCAATTAGCTTTGTCAGTGAACATATTGAAACACTAGAAGAAATTGATGTTGAGTACAAAGAATTGGCTTTAGAATCTGGAATAGAAAATTGGGGCCGTGTTCCTGCTCTTGGATGTGAACCCACTTTCATTTCAGACTTGGCAGATGCTGTAATTGAGAGTCTCCCATATGTTGGTGCGATGGCCGTTTCAAACCTTGAAGCTCGACAGTCTTTGGTTCCCCTGGGCAGTGTAGAAGAGTTATTGGCAGCATATGACTCACAACGTAGGGAGTTGCCACCACCAATATTGGTGTGGGAATGGGGATGGACAAAGAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGATTGCTGTGTTGCTTCTGTTGTTTTTAGAAGTCACCACTGGAGAGGGATTTTTGCACCAGTGGGGAATATTGCCCTTATTTAGGTGA

Protein sequence

>Msa0569930

MSSATSRFNRRSSNEFGFKSERGLSGSVGSGVRRRIRKCSCGEFLVLRTVTDESNPNYGEKFWGCRNWRNRVDNGCNHFQWVENEDDVVDDRDVRIAKQKKKNGKLKHEICCLKDELFSSRKCCKIAIGFATIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIENELKGFDLPEKVMIFFSAHGVPVAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIELGKKGVKSLLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPILVWEWGWTKSAETWNGRAAMIAVLLLLFLEVTTGEGFLHQWGILPLFR*