AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1160770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160770 MtrunA17_Chr7g0255971 99.296 426 3 0 1 426 1 426 0.0 882
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160770 AT1G05055.1 75.186 403 95 2 25 426 22 420 0.0 643

Find 144 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTGTTGTTTGCATTT+TGG 0.110115 7_4:-50850559 None:intergenic
TAATTAACTGCTGCATCTTT+TGG 0.192887 7_4:+50847890 Msa1160770:five_prime_UTR
CGCAAAGCATTTACTGCTTA+AGG 0.211646 7_4:-50850839 None:intergenic
CCAAATGGGGCGAAGAAATA+AGG 0.217199 7_4:-50849410 None:intergenic
AATACGTTCCTCCAGTTTCT+TGG 0.246278 7_4:-50849039 None:intergenic
CGCGGAGGCGTCTACGATAC+TGG 0.254751 7_4:-50848105 None:intergenic
AGCAGGTTGAGTTATTTATC+AGG 0.265498 7_4:+50848666 Msa1160770:CDS
ATGAATGGCTGTCGTATCTA+TGG 0.319191 7_4:-50848077 None:intergenic
GCAATTAGCTACCCCATCTT+TGG 0.320025 7_4:-50848735 None:intergenic
CCTTATTTCTTCGCCCCATT+TGG 0.328190 7_4:+50849410 Msa1160770:CDS
GGATGCAACATCACAATAAC+AGG 0.332868 7_4:-50850735 None:intergenic
ATCTCAGCAAATGGCACTAT+AGG 0.336549 7_4:-50849456 None:intergenic
TGTTGGTCAGTCCCGTTTCA+TGG 0.342585 7_4:-50850787 None:intergenic
GCAAAGCATTTACTGCTTAA+GGG 0.354182 7_4:-50850838 None:intergenic
ATTGCTGGGAGACCACTTAA+TGG 0.357088 7_4:+50847932 Msa1160770:CDS
TTAAGCAGTAAATGCTTTGC+GGG 0.358488 7_4:+50850841 Msa1160770:three_prime_UTR
CAGACACGAACTTTGCATCT+TGG 0.370022 7_4:-50849351 None:intergenic
TTGACAACCAAAACAAGTAT+TGG 0.372545 7_4:-50849517 None:intergenic
ACTGTTGCAGCTTCTTCGTT+TGG 0.374824 7_4:+50847866 Msa1160770:intron
TGACAACCAAAACAAGTATT+GGG 0.384714 7_4:-50849516 None:intergenic
TCCACTTAGTCATGTTGGTT+TGG 0.385857 7_4:+50848706 Msa1160770:CDS
AAAGCTTTGATATGTGATTC+AGG 0.388836 7_4:-50848779 None:intergenic
TACGGCTAATTTGATTAAGA+TGG 0.391974 7_4:+50849245 Msa1160770:CDS
TTAGTGGCGGCAAGGGCGAC+GGG 0.395842 7_4:-50846889 None:intergenic
TTAGTGATATTATTTATATG+AGG 0.397548 7_4:+50850874 Msa1160770:three_prime_UTR
GCTAATTGCTTGACAGATCT+TGG 0.398261 7_4:+50848749 Msa1160770:CDS
TCAACAAAGTCTCCTTAGTC+AGG 0.400238 7_4:+50849536 Msa1160770:CDS
TAGATCATGGGAGTCTTTGC+AGG 0.400865 7_4:+50848030 Msa1160770:CDS
TGTCATGAAGAGGCCAAAAC+TGG 0.406378 7_4:+50849312 Msa1160770:CDS
AACAAGTATTGGGAAAACTA+TGG 0.408053 7_4:-50849506 None:intergenic
GAAATCATGAATAACATTGC+TGG 0.411953 7_4:+50847917 Msa1160770:exon
AGCATAGGGCTGAAAATCAT+TGG 0.418688 7_4:-50850669 None:intergenic
GCAGTAAATGCTTTGCGGGC+TGG 0.419918 7_4:+50850845 Msa1160770:three_prime_UTR
GTAGCATACTCTGCTATTGC+TGG 0.426986 7_4:-50849225 None:intergenic
AAGCATCTTTGCCAAGAAAC+TGG 0.430517 7_4:+50849028 Msa1160770:CDS
TTGTTCATGAGTCCGGTAGA+TGG 0.432629 7_4:-50850756 None:intergenic
TCTCAGCAAATGGCACTATA+GGG 0.432960 7_4:-50849455 None:intergenic
CTTAGTGGCGGCAAGGGCGA+CGG 0.433601 7_4:-50846890 None:intergenic
AAGCTCTCTCCCATGCTTCA+AGG 0.434199 7_4:-50847997 None:intergenic
GCAATAACAGCCATTCTACT+TGG 0.435975 7_4:-50848641 None:intergenic
CCGGACTCATGAACAAGTTC+CGG 0.441793 7_4:+50850763 Msa1160770:three_prime_UTR
AGCTACTGCGCGAATTCAAA+AGG 0.444332 7_4:+50848144 Msa1160770:CDS
TGCCTGAAGCTCTCACAGCC+TGG 0.445795 7_4:-50850625 None:intergenic
GTCAGTCCCGTTTCATGGAC+CGG 0.446240 7_4:-50850782 None:intergenic
ATCACATATCAAAGCTTTGA+TGG 0.453412 7_4:+50848784 Msa1160770:CDS
CAAGTTCCGGTCCATGAAAC+GGG 0.454078 7_4:+50850776 Msa1160770:three_prime_UTR
AAAATAAGATGCTCGGTCAT+TGG 0.454904 7_4:+50848980 Msa1160770:CDS
AGGGCGACGGGGCTCAGCGT+TGG 0.460990 7_4:-50846877 None:intergenic
CTTAAGCAGTAAATGCTTTG+CGG 0.464779 7_4:+50850840 Msa1160770:three_prime_UTR
ATGATATGACCTTGCCAAAT+GGG 0.468641 7_4:-50849424 None:intergenic
CTTATACAGAAGATAGATCA+TGG 0.469908 7_4:+50848017 Msa1160770:CDS
TCTGCTATTGCTGGAGGTGG+TGG 0.474873 7_4:-50849216 None:intergenic
CAGAATCCACTTAGTCATGT+TGG 0.477460 7_4:+50848701 Msa1160770:CDS
GAACCCTCAGCTGCTCTTTG+CGG 0.478027 7_4:-50849273 None:intergenic
AATTTAATGTCGAGAGCATA+GGG 0.480867 7_4:-50850683 None:intergenic
CAAGAATTAACTCTTTAAAG+TGG 0.481614 7_4:-50849185 None:intergenic
AAATTGCAAGGGAGACATGC+TGG 0.484045 7_4:-50851019 None:intergenic
CTAAATCAAATCCCATCATA+TGG 0.484909 7_4:+50848869 Msa1160770:CDS
CAAATGGGGCGAAGAAATAA+GGG 0.486869 7_4:-50849409 None:intergenic
CAGTAGCTGCATTGGAAGCA+AGG 0.488868 7_4:-50848129 None:intergenic
AATGGCTGTTATTGCAAAGC+AGG 0.492810 7_4:+50848649 Msa1160770:CDS
ACTTCTCGATGACCATATGA+TGG 0.494544 7_4:-50848881 None:intergenic
TAGTGATATTATTTATATGA+GGG 0.495841 7_4:+50850875 Msa1160770:three_prime_UTR
ACGGCTAATTTGATTAAGAT+GGG 0.497450 7_4:+50849246 Msa1160770:CDS
AATTCGCGCAGTAGCTGCAT+TGG 0.498951 7_4:-50848137 None:intergenic
TCTTTGCAGGAAGATGAATC+TGG 0.499907 7_4:+50848043 Msa1160770:CDS
CGGTGATCGGAGAAGCTTAG+TGG 0.501668 7_4:-50846905 None:intergenic
ACAAGTTCCGGTCCATGAAA+CGG 0.503143 7_4:+50850775 Msa1160770:three_prime_UTR
TCTTCTAAATCTCCATTAAG+TGG 0.504303 7_4:-50847944 None:intergenic
CCGGAACTTGTTCATGAGTC+CGG 0.506310 7_4:-50850763 None:intergenic
TACTCTGCTATTGCTGGAGG+TGG 0.509837 7_4:-50849219 None:intergenic
TGATGACGGCCTTGAAGCAT+GGG 0.514779 7_4:+50847988 Msa1160770:CDS
GCCCTCAGTACATGTGATCC+TGG 0.517560 7_4:+50848920 Msa1160770:CDS
GCATAGGGCTGAAAATCATT+GGG 0.517731 7_4:-50850668 None:intergenic
AAGAATTAACTCTTTAAAGT+GGG 0.519422 7_4:-50849184 None:intergenic
ATGTGATCCTGGTGATCTCA+TGG 0.524391 7_4:+50848931 Msa1160770:CDS
CAATTTAATGTCGAGAGCAT+AGG 0.527004 7_4:-50850684 None:intergenic
TTCCAGGAAAGAACAAAAGA+AGG 0.527754 7_4:-50850949 None:intergenic
GATGGAGAGATCTCAGCAAA+TGG 0.528431 7_4:-50849465 None:intergenic
GCAGATGCTTACCCTGACTA+AGG 0.531723 7_4:-50849548 None:intergenic
ATGATGACGGCCTTGAAGCA+TGG 0.531905 7_4:+50847987 Msa1160770:CDS
GTTTGGTGACTACCAAAGAT+GGG 0.532066 7_4:+50848723 Msa1160770:CDS
CTGCATTGGAAGCAAGGGCG+CGG 0.534684 7_4:-50848123 None:intergenic
ACGATACTGGGCATGATGAA+TGG 0.537849 7_4:-50848092 None:intergenic
AAATCATGAATAACATTGCT+GGG 0.538852 7_4:+50847918 Msa1160770:exon
ACGATACTTATACATTGTTG+TGG 0.540981 7_4:+50848174 Msa1160770:CDS
GTGATGTTGCATCCATCTAC+CGG 0.542199 7_4:+50850744 Msa1160770:three_prime_UTR
GAGAAGCTTAGTGGCGGCAA+GGG 0.543362 7_4:-50846896 None:intergenic
GGTTTGGTGACTACCAAAGA+TGG 0.543660 7_4:+50848722 Msa1160770:CDS
ACCAAACCAACATGACTAAG+TGG 0.545386 7_4:-50848707 None:intergenic
GTATTGGGAAAACTATGGCT+TGG 0.546635 7_4:-50849501 None:intergenic
GCAGGTTGAGTTATTTATCA+GGG 0.547101 7_4:+50848667 Msa1160770:CDS
ATGGGTAAACTAGAATGCTC+AGG 0.550740 7_4:+50848803 Msa1160770:CDS
GCGGAGGCGTCTACGATACT+GGG 0.551267 7_4:-50848104 None:intergenic
AAATACTTTGCTGGCAACAA+CGG 0.551591 7_4:-50851066 None:intergenic
GAATGTACATGTCACAATCA+AGG 0.551889 7_4:-50850582 None:intergenic
GATGATATGACCTTGCCAAA+TGG 0.554390 7_4:-50849425 None:intergenic
AAAGAGTAAAATAAGATGCT+CGG 0.555283 7_4:+50848973 Msa1160770:CDS
GGACTTTCGACCAAGTAGAA+TGG 0.557663 7_4:+50848631 Msa1160770:CDS
TTTCTTCGCCCCATTTGGCA+AGG 0.558902 7_4:+50849415 Msa1160770:CDS
ACATTAAATTGCTATCTAAG+TGG 0.563697 7_4:+50850696 Msa1160770:three_prime_UTR
GGAGAAGCTTAGTGGCGGCA+AGG 0.566664 7_4:-50846897 None:intergenic
GCTACTGCGCGAATTCAAAA+GGG 0.568436 7_4:+50848145 Msa1160770:CDS
AGTAGCTGCATTGGAAGCAA+GGG 0.572059 7_4:-50848128 None:intergenic
AGCCATACCTCAACGGTGAT+CGG 0.577511 7_4:-50846918 None:intergenic
TCACATATCAAAGCTTTGAT+GGG 0.580406 7_4:+50848785 Msa1160770:CDS
GAAGAGGCCAAAACTGGAGG+GGG 0.581044 7_4:+50849318 Msa1160770:CDS
ATAAAACCAATACCTTGGAC+AGG 0.584168 7_4:-50848198 None:intergenic
TTTCCCGCAAAGAGCAGCTG+AGG 0.588226 7_4:+50849269 Msa1160770:CDS
ATGAAGAGGCCAAAACTGGA+GGG 0.588329 7_4:+50849316 Msa1160770:CDS
ATAGTTTCCATGAGATCACC+AGG 0.588426 7_4:-50848938 None:intergenic
CATTGGAAGCAAGGGCGCGG+AGG 0.590208 7_4:-50848120 None:intergenic
CATTGTTGTGGACCTGTCCA+AGG 0.596446 7_4:+50848186 Msa1160770:CDS
CATGAAGAGGCCAAAACTGG+AGG 0.598041 7_4:+50849315 Msa1160770:CDS
CCACAGACGCGGCATTCAGT+AGG 0.598667 7_4:-50849381 None:intergenic
CTTCTCGATGACCATATGAT+GGG 0.601649 7_4:-50848880 None:intergenic
GAGAGCTTACATAATTGCCC+AGG 0.603317 7_4:+50850607 Msa1160770:CDS
ACCAGGATCACATGTACTGA+GGG 0.609658 7_4:-50848921 None:intergenic
AATTTGTACATGTCATGAAG+AGG 0.609944 7_4:+50849302 Msa1160770:CDS
ATCAGGTGATCAGATGGTGT+TGG 0.610013 7_4:-50850804 None:intergenic
TGAAGAGGCCAAAACTGGAG+GGG 0.611129 7_4:+50849317 Msa1160770:CDS
AGCAATAGCAGAGTATGCTA+CGG 0.612493 7_4:+50849227 Msa1160770:CDS
CAACAAAGTCTCCTTAGTCA+GGG 0.617485 7_4:+50849537 Msa1160770:CDS
TAGTGGCGGCAAGGGCGACG+GGG 0.619705 7_4:-50846888 None:intergenic
AATTGCTTGACAGATCTTGG+TGG 0.623485 7_4:+50848752 Msa1160770:CDS
AGCTTCTCCGATCACCGTTG+AGG 0.627309 7_4:+50846911 Msa1160770:five_prime_UTR
ATGACATGTACAAATTGCAA+CGG 0.627725 7_4:-50849295 None:intergenic
TTCCCGCAAAGAGCAGCTGA+GGG 0.629400 7_4:+50849270 Msa1160770:CDS
GCATACTCTGCTATTGCTGG+AGG 0.629853 7_4:-50849222 None:intergenic
TGTGAAGGCAGCTTCAGAGA+GGG 0.635359 7_4:+50848610 Msa1160770:intron
TGTTGACAGCCATACCTCAA+CGG 0.638022 7_4:-50846925 None:intergenic
TTATACAGAAGATAGATCAT+GGG 0.648110 7_4:+50848018 Msa1160770:CDS
GTATTCAGTTGCACTAGATG+AGG 0.654736 7_4:+50849057 Msa1160770:CDS
TGATATGACCTTGCCAAATG+GGG 0.658745 7_4:-50849423 None:intergenic
GAAGATGAAGCTAATGATGA+CGG 0.672146 7_4:+50847974 Msa1160770:CDS
TGAATGGCTGTCGTATCTAT+GGG 0.676923 7_4:-50848076 None:intergenic
CACCAGGATCACATGTACTG+AGG 0.677082 7_4:-50848922 None:intergenic
TTTGGTGACTACCAAAGATG+GGG 0.677542 7_4:+50848724 Msa1160770:CDS
CATCTTTGCCAAGAAACTGG+AGG 0.685674 7_4:+50849031 Msa1160770:CDS
ATGTGAAGGCAGCTTCAGAG+AGG 0.697264 7_4:+50848609 Msa1160770:intron
TGATCGGAGAAGCTTAGTGG+CGG 0.705543 7_4:-50846902 None:intergenic
TAAGGGTCAATCCACAGACG+CGG 0.726359 7_4:-50849392 None:intergenic
GATGCAACATCACAATAACA+GGG 0.762256 7_4:-50850734 None:intergenic
GCAACATCACAATAACAGGG+AGG 0.778977 7_4:-50850731 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATAAAAAAACTTAAAAA+AGG + chr7_4:50846821-50846840 Msa1160770:five_prime_UTR 10.0%
!! GTAATATAAAAATAACAAAT+AGG + chr7_4:50849695-50849714 Msa1160770:intron 10.0%
!! ATCTAATAAATAAAAAAATC+TGG - chr7_4:50849817-50849836 None:intergenic 10.0%
!! AAATACAAATTATATATCAT+CGG - chr7_4:50850408-50850427 None:intergenic 10.0%
!!! AAAAAGAAAATAATTTGTTA+TGG - chr7_4:50850929-50850948 None:intergenic 10.0%
!!! TTATTTGTTGTATATTTGTT+TGG + chr7_4:50847221-50847240 Msa1160770:intron 15.0%
!! TTATTGAAATACATAAATTG+TGG + chr7_4:50849763-50849782 Msa1160770:intron 15.0%
!! ATATACTATATAGTATAGTT+GGG - chr7_4:50850328-50850347 None:intergenic 15.0%
!! TTAGTGATATTATTTATATG+AGG + chr7_4:50850874-50850893 Msa1160770:three_prime_UTR 15.0%
!! TAGTGATATTATTTATATGA+GGG + chr7_4:50850875-50850894 Msa1160770:three_prime_UTR 15.0%
!! ATTGATTAAAAAAATTGCAA+GGG - chr7_4:50851033-50851052 None:intergenic 15.0%
!!! TTGCAATTTTTTTAATCAAT+GGG + chr7_4:50851033-50851052 Msa1160770:three_prime_UTR 15.0%
!!! TTAAGTTTTTTTATTTGCGT+TGG - chr7_4:50846818-50846837 None:intergenic 20.0%
!! AACATAATACAATCAGTTTA+GGG - chr7_4:50846970-50846989 None:intergenic 20.0%
!!! GCATATTAGAATATTTTACA+CGG - chr7_4:50847004-50847023 None:intergenic 20.0%
!! ATTTGCAAAGTGAAAAATAA+AGG - chr7_4:50847496-50847515 None:intergenic 20.0%
!! TATTTATGCATAGGAAATTA+CGG - chr7_4:50847573-50847592 None:intergenic 20.0%
!! TTCATGATCTTATTATTTCA+CGG + chr7_4:50847661-50847680 Msa1160770:intron 20.0%
!! AATTAATAAAACCAATACCT+TGG - chr7_4:50848206-50848225 None:intergenic 20.0%
!!! TTTTCAAGTAATCAATACAA+TGG - chr7_4:50848268-50848287 None:intergenic 20.0%
!!! TGTATTGATTACTTGAAAAT+TGG + chr7_4:50848269-50848288 Msa1160770:intron 20.0%
!!! GTATTGATTACTTGAAAATT+GGG + chr7_4:50848270-50848289 Msa1160770:intron 20.0%
!!! TATTGATTACTTGAAAATTG+GGG + chr7_4:50848271-50848290 Msa1160770:intron 20.0%
!!! ATTCAAAAAGCATTTGTAAA+AGG - chr7_4:50848358-50848377 None:intergenic 20.0%
!! GCAATTTCATATATAATTAC+AGG - chr7_4:50848482-50848501 None:intergenic 20.0%
!! AATAAGATACTTGTAATTGT+AGG - chr7_4:50848512-50848531 None:intergenic 20.0%
!!! AGAAGTTCTGATTTTATATT+CGG + chr7_4:50848898-50848917 Msa1160770:CDS 20.0%
!!! TTTTACTCTTTTTGCATTTT+TGG - chr7_4:50848964-50848983 None:intergenic 20.0%
!!! AAGAATTAACTCTTTAAAGT+GGG - chr7_4:50849187-50849206 None:intergenic 20.0%
!!! CAAAAATTATTGACTATTAC+AGG - chr7_4:50850043-50850062 None:intergenic 20.0%
!! CATATACTATATAGTATAGT+TGG - chr7_4:50850329-50850348 None:intergenic 20.0%
!!! CATTGATTAAAAAAATTGCA+AGG - chr7_4:50851034-50851053 None:intergenic 20.0%
!!! CTTGCAATTTTTTTAATCAA+TGG + chr7_4:50851032-50851051 Msa1160770:three_prime_UTR 20.0%
!! TGATTATAAAAATACTTTGC+TGG - chr7_4:50851078-50851097 None:intergenic 20.0%
! ACATAATACAATCAGTTTAG+GGG - chr7_4:50846969-50846988 None:intergenic 25.0%
! GAACATAATACAATCAGTTT+AGG - chr7_4:50846971-50846990 None:intergenic 25.0%
!! GTATATTTGTTTGGTTAGTT+AGG + chr7_4:50847230-50847249 Msa1160770:intron 25.0%
! TTAGGTTCAGAAGAATTTAA+GGG + chr7_4:50847248-50847267 Msa1160770:intron 25.0%
! GGATATATATTCATAGGTTT+CGG + chr7_4:50847274-50847293 Msa1160770:intron 25.0%
! ATTTATGCATAGGAAATTAC+GGG - chr7_4:50847572-50847591 None:intergenic 25.0%
! TGAGGTTATTATTTATGCAT+AGG - chr7_4:50847582-50847601 None:intergenic 25.0%
! GTGAAATTAAAAAGAAAACG+AGG - chr7_4:50847612-50847631 None:intergenic 25.0%
! GAATAATTCACACACATAAA+GGG - chr7_4:50847751-50847770 None:intergenic 25.0%
! TGAATAATTCACACACATAA+AGG - chr7_4:50847752-50847771 None:intergenic 25.0%
! AAATCATGAATAACATTGCT+GGG + chr7_4:50847918-50847937 Msa1160770:exon 25.0%
! TTATACAGAAGATAGATCAT+GGG + chr7_4:50848018-50848037 Msa1160770:CDS 25.0%
! AGGAAATATAGATAAGACAT+TGG - chr7_4:50848338-50848357 None:intergenic 25.0%
! AAGTATAGATGTACTTCTAA+AGG - chr7_4:50848392-50848411 None:intergenic 25.0%
! TAGAAACTAGTTATGTTACA+AGG - chr7_4:50848584-50848603 None:intergenic 25.0%
! AAAGAGTAAAATAAGATGCT+CGG + chr7_4:50848973-50848992 Msa1160770:CDS 25.0%
!! CAAGAATTAACTCTTTAAAG+TGG - chr7_4:50849188-50849207 None:intergenic 25.0%
! TACATTTGACATAGCATATT+AGG - chr7_4:50849649-50849668 None:intergenic 25.0%
! TAATTTCATAAATTCTTCCC+AGG + chr7_4:50849722-50849741 Msa1160770:intron 25.0%
! AATTTCATAAATTCTTCCCA+GGG + chr7_4:50849723-50849742 Msa1160770:intron 25.0%
!! AATAGTCAATAATTTTTGCG+AGG + chr7_4:50850045-50850064 Msa1160770:intron 25.0%
!!! TTTTTTCTCATCCATATTTG+GGG - chr7_4:50850154-50850173 None:intergenic 25.0%
!!! CTTTTTTCTCATCCATATTT+GGG - chr7_4:50850155-50850174 None:intergenic 25.0%
!!! ACTTTTTTCTCATCCATATT+TGG - chr7_4:50850156-50850175 None:intergenic 25.0%
!!! AGAATTGTTGTTTGCATTTT+GGG - chr7_4:50850561-50850580 None:intergenic 25.0%
! ACATTAAATTGCTATCTAAG+TGG + chr7_4:50850696-50850715 Msa1160770:three_prime_UTR 25.0%
!!! TTACATGTGTTTTAATTTCC+AGG - chr7_4:50850968-50850987 None:intergenic 25.0%
GAAGAAATCCAAAACGAAAA+GGG - chr7_4:50847040-50847059 None:intergenic 30.0%
AGAAGAAATCCAAAACGAAA+AGG - chr7_4:50847041-50847060 None:intergenic 30.0%
!!! TCTTCTACTTTTGAAATCAG+CGG + chr7_4:50847055-50847074 Msa1160770:intron 30.0%
TTAGTGTACAAAGCGAAATA+GGG - chr7_4:50847099-50847118 None:intergenic 30.0%
TTTAGTGTACAAAGCGAAAT+AGG - chr7_4:50847100-50847119 None:intergenic 30.0%
AATGAATGACTCTCACATTA+AGG - chr7_4:50847139-50847158 None:intergenic 30.0%
GTTAGGTTCAGAAGAATTTA+AGG + chr7_4:50847247-50847266 Msa1160770:intron 30.0%
TGTTGTTACTAGTTGTTTGT+TGG + chr7_4:50847309-50847328 Msa1160770:intron 30.0%
AACACAACTCAATCATAGAA+CGG - chr7_4:50847715-50847734 None:intergenic 30.0%
ATTAATGAATGCCAACACTA+TGG + chr7_4:50847771-50847790 Msa1160770:intron 30.0%
GAAACATCAGCACTTAAAAA+GGG - chr7_4:50847798-50847817 None:intergenic 30.0%
AGAAACATCAGCACTTAAAA+AGG - chr7_4:50847799-50847818 None:intergenic 30.0%
! TAATTAACTGCTGCATCTTT+TGG + chr7_4:50847890-50847909 Msa1160770:five_prime_UTR 30.0%
! AATTAACTGCTGCATCTTTT+GGG + chr7_4:50847891-50847910 Msa1160770:five_prime_UTR 30.0%
GAAATCATGAATAACATTGC+TGG + chr7_4:50847917-50847936 Msa1160770:exon 30.0%
TCTTCTAAATCTCCATTAAG+TGG - chr7_4:50847947-50847966 None:intergenic 30.0%
CTTATACAGAAGATAGATCA+TGG + chr7_4:50848017-50848036 Msa1160770:CDS 30.0%
ACGATACTTATACATTGTTG+TGG + chr7_4:50848174-50848193 Msa1160770:CDS 30.0%
TCAATAAGTTAGCACTTAAC+AGG + chr7_4:50848414-50848433 Msa1160770:intron 30.0%
TAGTTTCTAACATCATGTGA+AGG + chr7_4:50848595-50848614 Msa1160770:intron 30.0%
! AAAGCTTTGATATGTGATTC+AGG - chr7_4:50848782-50848801 None:intergenic 30.0%
! ATCACATATCAAAGCTTTGA+TGG + chr7_4:50848784-50848803 Msa1160770:CDS 30.0%
! TCACATATCAAAGCTTTGAT+GGG + chr7_4:50848785-50848804 Msa1160770:CDS 30.0%
!! AAGTTCTAGTGCATTTTGTA+GGG - chr7_4:50848837-50848856 None:intergenic 30.0%
CTAAATCAAATCCCATCATA+TGG + chr7_4:50848869-50848888 Msa1160770:CDS 30.0%
AAAAATGCTGACACATTCTA+AGG - chr7_4:50849121-50849140 None:intergenic 30.0%
TACGGCTAATTTGATTAAGA+TGG + chr7_4:50849245-50849264 Msa1160770:CDS 30.0%
ACGGCTAATTTGATTAAGAT+GGG + chr7_4:50849246-50849265 Msa1160770:CDS 30.0%
ATGACATGTACAAATTGCAA+CGG - chr7_4:50849298-50849317 None:intergenic 30.0%
AATTTGTACATGTCATGAAG+AGG + chr7_4:50849302-50849321 Msa1160770:CDS 30.0%
!! AACAAGTATTGGGAAAACTA+TGG - chr7_4:50849509-50849528 None:intergenic 30.0%
! AGTTTTCCCAATACTTGTTT+TGG + chr7_4:50849510-50849529 Msa1160770:CDS 30.0%
TGACAACCAAAACAAGTATT+GGG - chr7_4:50849519-50849538 None:intergenic 30.0%
TTGACAACCAAAACAAGTAT+TGG - chr7_4:50849520-50849539 None:intergenic 30.0%
ATCTTCAAGATTAAATCCCT+GGG - chr7_4:50849742-50849761 None:intergenic 30.0%
AATCTTCAAGATTAAATCCC+TGG - chr7_4:50849743-50849762 None:intergenic 30.0%
ATGACCTAACCATTGTAAAA+GGG + chr7_4:50849848-50849867 Msa1160770:intron 30.0%
! TAATCCCTTTTACAATGGTT+AGG - chr7_4:50849855-50849874 None:intergenic 30.0%
AGTATGAAAGCTATGTTTGA+TGG + chr7_4:50850110-50850129 Msa1160770:intron 30.0%
TATGGATGAGAAAAAAGTCA+TGG + chr7_4:50850158-50850177 Msa1160770:intron 30.0%
!! TCATGGTTTGTTAAAGTAAC+AGG + chr7_4:50850175-50850194 Msa1160770:intron 30.0%
AGACACAGTACTCAATTATT+TGG - chr7_4:50850259-50850278 None:intergenic 30.0%
!!! CAGAATTGTTGTTTGCATTT+TGG - chr7_4:50850562-50850581 None:intergenic 30.0%
! AATTTAATGTCGAGAGCATA+GGG - chr7_4:50850686-50850705 None:intergenic 30.0%
ATACAATCAGTTTAGGGGAT+TGG - chr7_4:50846964-50846983 None:intergenic 35.0%
! CTAAGTAACCCTTTTCGTTT+TGG + chr7_4:50847029-50847048 Msa1160770:intron 35.0%
TGCAGAGTGAAAAACAAAGA+AGG - chr7_4:50847168-50847187 None:intergenic 35.0%
TTCAGAAGAATTTAAGGGTG+AGG + chr7_4:50847253-50847272 Msa1160770:intron 35.0%
GGGTGAGGATATATATTCAT+AGG + chr7_4:50847268-50847287 Msa1160770:intron 35.0%
TTAAAAAGGGACCATAGTGT+TGG - chr7_4:50847785-50847804 None:intergenic 35.0%
GAAGATGAAGCTAATGATGA+CGG + chr7_4:50847974-50847993 Msa1160770:CDS 35.0%
ATAAAACCAATACCTTGGAC+AGG - chr7_4:50848201-50848220 None:intergenic 35.0%
GAAAATTGGGGTTCAATTAG+AGG + chr7_4:50848283-50848302 Msa1160770:intron 35.0%
! TAGTCGCACTAATTTTCATG+TGG + chr7_4:50848443-50848462 Msa1160770:intron 35.0%
! AGCAGGTTGAGTTATTTATC+AGG + chr7_4:50848666-50848685 Msa1160770:CDS 35.0%
! GCAGGTTGAGTTATTTATCA+GGG + chr7_4:50848667-50848686 Msa1160770:CDS 35.0%
!! CAAGTTCTAGTGCATTTTGT+AGG - chr7_4:50848838-50848857 None:intergenic 35.0%
AAAATAAGATGCTCGGTCAT+TGG + chr7_4:50848980-50848999 Msa1160770:CDS 35.0%
ATGATATGACCTTGCCAAAT+GGG - chr7_4:50849427-50849446 None:intergenic 35.0%
!!! CTTGGATCATTTTGAGATGA+TGG - chr7_4:50849486-50849505 None:intergenic 35.0%
AGACTCATGATACTGCTTAA+AGG + chr7_4:50849668-50849687 Msa1160770:intron 35.0%
GACTCATGATACTGCTTAAA+GGG + chr7_4:50849669-50849688 Msa1160770:intron 35.0%
CATGACCTAACCATTGTAAA+AGG + chr7_4:50849847-50849866 Msa1160770:intron 35.0%
! GTTGCTAATCCCTTTTACAA+TGG - chr7_4:50849860-50849879 None:intergenic 35.0%
CTCAATGCTAGTATCTTACA+AGG + chr7_4:50849985-50850004 Msa1160770:intron 35.0%
! TATTGACTATTACAGGCTCA+CGG - chr7_4:50850036-50850055 None:intergenic 35.0%
!! TGGTTTGTTAAAGTAACAGG+TGG + chr7_4:50850178-50850197 Msa1160770:intron 35.0%
AACCTGTAAAAGCAGTGTTT+GGG - chr7_4:50850501-50850520 None:intergenic 35.0%
AAACCTGTAAAAGCAGTGTT+TGG - chr7_4:50850502-50850521 None:intergenic 35.0%
!! AACACTGCTTTTACAGGTTT+TGG + chr7_4:50850502-50850521 Msa1160770:intron 35.0%
GAATGTACATGTCACAATCA+AGG - chr7_4:50850585-50850604 None:intergenic 35.0%
! CAATTTAATGTCGAGAGCAT+AGG - chr7_4:50850687-50850706 None:intergenic 35.0%
GATGCAACATCACAATAACA+GGG - chr7_4:50850737-50850756 None:intergenic 35.0%
!! ATTTTGATCAGGTGATCAGA+TGG - chr7_4:50850813-50850832 None:intergenic 35.0%
! GCAAAGCATTTACTGCTTAA+GGG - chr7_4:50850841-50850860 None:intergenic 35.0%
CTTAAGCAGTAAATGCTTTG+CGG + chr7_4:50850840-50850859 Msa1160770:three_prime_UTR 35.0%
TTAAGCAGTAAATGCTTTGC+GGG + chr7_4:50850841-50850860 Msa1160770:three_prime_UTR 35.0%
! TTCCTTCTTTTGTTCTTTCC+TGG + chr7_4:50850947-50850966 Msa1160770:three_prime_UTR 35.0%
TTCCAGGAAAGAACAAAAGA+AGG - chr7_4:50850952-50850971 None:intergenic 35.0%
AAATACTTTGCTGGCAACAA+CGG - chr7_4:50851069-50851088 None:intergenic 35.0%
TCAGTTTAGGGGATTGGATT+TGG - chr7_4:50846958-50846977 None:intergenic 40.0%
! AGTTGTTTGTTGGAACATGC+TGG + chr7_4:50847319-50847338 Msa1160770:intron 40.0%
! GTTGTTTGTTGGAACATGCT+GGG + chr7_4:50847320-50847339 Msa1160770:intron 40.0%
AGTTGCATTGCAATGTCTGA+GGG + chr7_4:50847373-50847392 Msa1160770:intron 40.0%
AGAAAACGAGGTTCAAAGTG+AGG - chr7_4:50847600-50847619 None:intergenic 40.0%
TCTTTGCAGGAAGATGAATC+TGG + chr7_4:50848043-50848062 Msa1160770:CDS 40.0%
TGAATGGCTGTCGTATCTAT+GGG - chr7_4:50848079-50848098 None:intergenic 40.0%
ATGAATGGCTGTCGTATCTA+TGG - chr7_4:50848080-50848099 None:intergenic 40.0%
ATTGGGGTTCAATTAGAGGT+TGG + chr7_4:50848287-50848306 Msa1160770:intron 40.0%
TTGGGGTTCAATTAGAGGTT+GGG + chr7_4:50848288-50848307 Msa1160770:intron 40.0%
CAATTAGAGGTTGGGTATGT+TGG + chr7_4:50848296-50848315 Msa1160770:intron 40.0%
GCAATAACAGCCATTCTACT+TGG - chr7_4:50848644-50848663 None:intergenic 40.0%
AATGGCTGTTATTGCAAAGC+AGG + chr7_4:50848649-50848668 Msa1160770:CDS 40.0%
CAGAATCCACTTAGTCATGT+TGG + chr7_4:50848701-50848720 Msa1160770:CDS 40.0%
! TCCACTTAGTCATGTTGGTT+TGG + chr7_4:50848706-50848725 Msa1160770:CDS 40.0%
ACCAAACCAACATGACTAAG+TGG - chr7_4:50848710-50848729 None:intergenic 40.0%
! GTTTGGTGACTACCAAAGAT+GGG + chr7_4:50848723-50848742 Msa1160770:CDS 40.0%
! TTTGGTGACTACCAAAGATG+GGG + chr7_4:50848724-50848743 Msa1160770:CDS 40.0%
GCTAATTGCTTGACAGATCT+TGG + chr7_4:50848749-50848768 Msa1160770:CDS 40.0%
AATTGCTTGACAGATCTTGG+TGG + chr7_4:50848752-50848771 Msa1160770:CDS 40.0%
ATGGGTAAACTAGAATGCTC+AGG + chr7_4:50848803-50848822 Msa1160770:CDS 40.0%
! TTCTAGTGCATTTTGTAGGG+AGG - chr7_4:50848834-50848853 None:intergenic 40.0%
CTTCTCGATGACCATATGAT+GGG - chr7_4:50848883-50848902 None:intergenic 40.0%
ACTTCTCGATGACCATATGA+TGG - chr7_4:50848884-50848903 None:intergenic 40.0%
ATAGTTTCCATGAGATCACC+AGG - chr7_4:50848941-50848960 None:intergenic 40.0%
AAGCATCTTTGCCAAGAAAC+TGG + chr7_4:50849028-50849047 Msa1160770:CDS 40.0%
AATACGTTCCTCCAGTTTCT+TGG - chr7_4:50849042-50849061 None:intergenic 40.0%
GTATTCAGTTGCACTAGATG+AGG + chr7_4:50849057-50849076 Msa1160770:CDS 40.0%
AGCAATAGCAGAGTATGCTA+CGG + chr7_4:50849227-50849246 Msa1160770:CDS 40.0%
CAAATGGGGCGAAGAAATAA+GGG - chr7_4:50849412-50849431 None:intergenic 40.0%
TGATATGACCTTGCCAAATG+GGG - chr7_4:50849426-50849445 None:intergenic 40.0%
GATGATATGACCTTGCCAAA+TGG - chr7_4:50849428-50849447 None:intergenic 40.0%
TCTCAGCAAATGGCACTATA+GGG - chr7_4:50849458-50849477 None:intergenic 40.0%
ATCTCAGCAAATGGCACTAT+AGG - chr7_4:50849459-50849478 None:intergenic 40.0%
GTATTGGGAAAACTATGGCT+TGG - chr7_4:50849504-50849523 None:intergenic 40.0%
TCAACAAAGTCTCCTTAGTC+AGG + chr7_4:50849536-50849555 Msa1160770:CDS 40.0%
CAACAAAGTCTCCTTAGTCA+GGG + chr7_4:50849537-50849556 Msa1160770:CDS 40.0%
AAGGTGGTTAACAGGGAATA+AGG - chr7_4:50849886-50849905 None:intergenic 40.0%
AACTCACAAGGTGGTTAACA+GGG - chr7_4:50849893-50849912 None:intergenic 40.0%
AACTAGAGCTACAACTCACA+AGG - chr7_4:50849905-50849924 None:intergenic 40.0%
GCATTGAGACACTTTAGCAT+GGG - chr7_4:50849973-50849992 None:intergenic 40.0%
! AGCATTGAGACACTTTAGCA+TGG - chr7_4:50849974-50849993 None:intergenic 40.0%
TTGCGAGGCATAAAAGTCTT+AGG + chr7_4:50850060-50850079 Msa1160770:intron 40.0%
ACACAGTTGTACCCCAAATA+TGG + chr7_4:50850140-50850159 Msa1160770:intron 40.0%
TACTGTATATTCTCAGCAGC+GGG - chr7_4:50850382-50850401 None:intergenic 40.0%
CTACTGTATATTCTCAGCAG+CGG - chr7_4:50850383-50850402 None:intergenic 40.0%
!! TTCCCAAACACTGCTTTTAC+AGG + chr7_4:50850496-50850515 Msa1160770:intron 40.0%
! TTTGCATTTTGGGCAAGAGA+CGG - chr7_4:50850551-50850570 None:intergenic 40.0%
GCATAGGGCTGAAAATCATT+GGG - chr7_4:50850671-50850690 None:intergenic 40.0%
AGCATAGGGCTGAAAATCAT+TGG - chr7_4:50850672-50850691 None:intergenic 40.0%
GGATGCAACATCACAATAAC+AGG - chr7_4:50850738-50850757 None:intergenic 40.0%
!! TAAGGGCTTGCATTTTGATC+AGG - chr7_4:50850824-50850843 None:intergenic 40.0%
! CGCAAAGCATTTACTGCTTA+AGG - chr7_4:50850842-50850861 None:intergenic 40.0%
TGTTGACAGCCATACCTCAA+CGG - chr7_4:50846928-50846947 None:intergenic 45.0%
CAGTTGCATTGCAATGTCTG+AGG + chr7_4:50847372-50847391 Msa1160770:intron 45.0%
TTCCACTACTAGCATAACCC+TGG - chr7_4:50847447-50847466 None:intergenic 45.0%
ACTGTTGCAGCTTCTTCGTT+TGG + chr7_4:50847866-50847885 Msa1160770:intron 45.0%
ATTGCTGGGAGACCACTTAA+TGG + chr7_4:50847932-50847951 Msa1160770:CDS 45.0%
TAGATCATGGGAGTCTTTGC+AGG + chr7_4:50848030-50848049 Msa1160770:CDS 45.0%
ACGATACTGGGCATGATGAA+TGG - chr7_4:50848095-50848114 None:intergenic 45.0%
AGTAGCTGCATTGGAAGCAA+GGG - chr7_4:50848131-50848150 None:intergenic 45.0%
AGCTACTGCGCGAATTCAAA+AGG + chr7_4:50848144-50848163 Msa1160770:CDS 45.0%
GCTACTGCGCGAATTCAAAA+GGG + chr7_4:50848145-50848164 Msa1160770:CDS 45.0%
GGACTTTCGACCAAGTAGAA+TGG + chr7_4:50848631-50848650 Msa1160770:CDS 45.0%
!! GGTTTGGTGACTACCAAAGA+TGG + chr7_4:50848722-50848741 Msa1160770:CDS 45.0%
GCAATTAGCTACCCCATCTT+TGG - chr7_4:50848738-50848757 None:intergenic 45.0%
ACCAGGATCACATGTACTGA+GGG - chr7_4:50848924-50848943 None:intergenic 45.0%
ATGTGATCCTGGTGATCTCA+TGG + chr7_4:50848931-50848950 Msa1160770:CDS 45.0%
CATCTTTGCCAAGAAACTGG+AGG + chr7_4:50849031-50849050 Msa1160770:CDS 45.0%
GACTGCACGAGATGTATACA+TGG - chr7_4:50849165-50849184 None:intergenic 45.0%
GTAGCATACTCTGCTATTGC+TGG - chr7_4:50849228-50849247 None:intergenic 45.0%
TGTCATGAAGAGGCCAAAAC+TGG + chr7_4:50849312-50849331 Msa1160770:CDS 45.0%
ATGAAGAGGCCAAAACTGGA+GGG + chr7_4:50849316-50849335 Msa1160770:CDS 45.0%
CAGACACGAACTTTGCATCT+TGG - chr7_4:50849354-50849373 None:intergenic 45.0%
CCAAATGGGGCGAAGAAATA+AGG - chr7_4:50849413-50849432 None:intergenic 45.0%
! CCTTATTTCTTCGCCCCATT+TGG + chr7_4:50849410-50849429 Msa1160770:CDS 45.0%
GATGGAGAGATCTCAGCAAA+TGG - chr7_4:50849468-50849487 None:intergenic 45.0%
CAACTCACAAGGTGGTTAAC+AGG - chr7_4:50849894-50849913 None:intergenic 45.0%
TAGAGCTACAACTCACAAGG+TGG - chr7_4:50849902-50849921 None:intergenic 45.0%
CAATCCACAATCCAACTGCT+TGG + chr7_4:50849936-50849955 Msa1160770:intron 45.0%
AAGTAACAGGTGGATGACAG+TGG + chr7_4:50850188-50850207 Msa1160770:intron 45.0%
!!! GCTTTTACAGGTTTTGGAGC+AGG + chr7_4:50850508-50850527 Msa1160770:intron 45.0%
!!! AGGTTTTGGAGCAGGAAACA+AGG + chr7_4:50850516-50850535 Msa1160770:intron 45.0%
GAGAGCTTACATAATTGCCC+AGG + chr7_4:50850607-50850626 Msa1160770:CDS 45.0%
GCAACATCACAATAACAGGG+AGG - chr7_4:50850734-50850753 None:intergenic 45.0%
GTGATGTTGCATCCATCTAC+CGG + chr7_4:50850744-50850763 Msa1160770:three_prime_UTR 45.0%
TTGTTCATGAGTCCGGTAGA+TGG - chr7_4:50850759-50850778 None:intergenic 45.0%
ACAAGTTCCGGTCCATGAAA+CGG + chr7_4:50850775-50850794 Msa1160770:three_prime_UTR 45.0%
ATCAGGTGATCAGATGGTGT+TGG - chr7_4:50850807-50850826 None:intergenic 45.0%
AAATTGCAAGGGAGACATGC+TGG - chr7_4:50851022-50851041 None:intergenic 45.0%
TGATCGGAGAAGCTTAGTGG+CGG - chr7_4:50846905-50846924 None:intergenic 50.0%
AGCCATACCTCAACGGTGAT+CGG - chr7_4:50846921-50846940 None:intergenic 50.0%
GGAACATGCTGGGTTGTTTG+TGG + chr7_4:50847330-50847349 Msa1160770:intron 50.0%
TGCAATGTCTGAGGGAACAC+CGG + chr7_4:50847381-50847400 Msa1160770:intron 50.0%
CACTACTAGCATAACCCTGG+CGG - chr7_4:50847444-50847463 None:intergenic 50.0%
!! ATGATGACGGCCTTGAAGCA+TGG + chr7_4:50847987-50848006 Msa1160770:CDS 50.0%
!! TGATGACGGCCTTGAAGCAT+GGG + chr7_4:50847988-50848007 Msa1160770:CDS 50.0%
AAGCTCTCTCCCATGCTTCA+AGG - chr7_4:50848000-50848019 None:intergenic 50.0%
CAGTAGCTGCATTGGAAGCA+AGG - chr7_4:50848132-50848151 None:intergenic 50.0%
AATTCGCGCAGTAGCTGCAT+TGG - chr7_4:50848140-50848159 None:intergenic 50.0%
CATTGTTGTGGACCTGTCCA+AGG + chr7_4:50848186-50848205 Msa1160770:CDS 50.0%
TGTGGACCTGTCCAAGGTAT+TGG + chr7_4:50848192-50848211 Msa1160770:intron 50.0%
ATGTGAAGGCAGCTTCAGAG+AGG + chr7_4:50848609-50848628 Msa1160770:intron 50.0%
TGTGAAGGCAGCTTCAGAGA+GGG + chr7_4:50848610-50848629 Msa1160770:intron 50.0%
CACCAGGATCACATGTACTG+AGG - chr7_4:50848925-50848944 None:intergenic 50.0%
TACTCTGCTATTGCTGGAGG+TGG - chr7_4:50849222-50849241 None:intergenic 50.0%
GCATACTCTGCTATTGCTGG+AGG - chr7_4:50849225-50849244 None:intergenic 50.0%
CATGAAGAGGCCAAAACTGG+AGG + chr7_4:50849315-50849334 Msa1160770:CDS 50.0%
TGAAGAGGCCAAAACTGGAG+GGG + chr7_4:50849317-50849336 Msa1160770:CDS 50.0%
! AGTGTATCCCCCTCCAGTTT+TGG - chr7_4:50849328-50849347 None:intergenic 50.0%
TAAGGGTCAATCCACAGACG+CGG - chr7_4:50849395-50849414 None:intergenic 50.0%
TTTCTTCGCCCCATTTGGCA+AGG + chr7_4:50849415-50849434 Msa1160770:CDS 50.0%
GCAGATGCTTACCCTGACTA+AGG - chr7_4:50849551-50849570 None:intergenic 50.0%
CTTTAGCATGGGCACATTGC+AGG - chr7_4:50849962-50849981 None:intergenic 50.0%
! CCGGAACTTGTTCATGAGTC+CGG - chr7_4:50850766-50850785 None:intergenic 50.0%
CCGGACTCATGAACAAGTTC+CGG + chr7_4:50850763-50850782 Msa1160770:three_prime_UTR 50.0%
CAAGTTCCGGTCCATGAAAC+GGG + chr7_4:50850776-50850795 Msa1160770:three_prime_UTR 50.0%
TGTTGGTCAGTCCCGTTTCA+TGG - chr7_4:50850790-50850809 None:intergenic 50.0%
GAGAAGCTTAGTGGCGGCAA+GGG - chr7_4:50846899-50846918 None:intergenic 55.0%
CGGTGATCGGAGAAGCTTAG+TGG - chr7_4:50846908-50846927 None:intergenic 55.0%
AGCTTCTCCGATCACCGTTG+AGG + chr7_4:50846911-50846930 Msa1160770:five_prime_UTR 55.0%
CTCCGATCACCGTTGAGGTA+TGG + chr7_4:50846916-50846935 Msa1160770:intron 55.0%
ATGTCTGAGGGAACACCGGT+TGG + chr7_4:50847385-50847404 Msa1160770:intron 55.0%
! TGTCTGAGGGAACACCGGTT+GGG + chr7_4:50847386-50847405 Msa1160770:intron 55.0%
!!! GCAGGGCAGGTGGTTTTATG+AGG + chr7_4:50847410-50847429 Msa1160770:intron 55.0%
TATGAGGCAAAGACACCGCC+AGG + chr7_4:50847426-50847445 Msa1160770:intron 55.0%
ATGAGGCAAAGACACCGCCA+GGG + chr7_4:50847427-50847446 Msa1160770:intron 55.0%
CGCCAGGGTTATGCTAGTAG+TGG + chr7_4:50847442-50847461 Msa1160770:intron 55.0%
GCCCTCAGTACATGTGATCC+TGG + chr7_4:50848920-50848939 Msa1160770:CDS 55.0%
TCTGCTATTGCTGGAGGTGG+TGG - chr7_4:50849219-50849238 None:intergenic 55.0%
TTTCCCGCAAAGAGCAGCTG+AGG + chr7_4:50849269-50849288 Msa1160770:CDS 55.0%
TTCCCGCAAAGAGCAGCTGA+GGG + chr7_4:50849270-50849289 Msa1160770:CDS 55.0%
AACCCTCAGCTGCTCTTTGC+GGG - chr7_4:50849275-50849294 None:intergenic 55.0%
GAACCCTCAGCTGCTCTTTG+CGG - chr7_4:50849276-50849295 None:intergenic 55.0%
GAAGAGGCCAAAACTGGAGG+GGG + chr7_4:50849318-50849337 Msa1160770:CDS 55.0%
CAGGCCAAGCAGTTGGATTG+TGG - chr7_4:50849943-50849962 None:intergenic 55.0%
CACATTGCAGGCCAAGCAGT+TGG - chr7_4:50849950-50849969 None:intergenic 55.0%
GTCAGTCCCGTTTCATGGAC+CGG - chr7_4:50850785-50850804 None:intergenic 55.0%
GCAGTAAATGCTTTGCGGGC+TGG + chr7_4:50850845-50850864 Msa1160770:three_prime_UTR 55.0%
GGAGAAGCTTAGTGGCGGCA+AGG - chr7_4:50846900-50846919 None:intergenic 60.0%
! GTCTGAGGGAACACCGGTTG+GGG + chr7_4:50847387-50847406 Msa1160770:intron 60.0%
! TCTGAGGGAACACCGGTTGG+GGG + chr7_4:50847388-50847407 Msa1160770:intron 60.0%
!! GCGGAGGCGTCTACGATACT+GGG - chr7_4:50848107-50848126 None:intergenic 60.0%
CTGCATTGGAAGCAAGGGCG+CGG - chr7_4:50848126-50848145 None:intergenic 60.0%
CCACAGACGCGGCATTCAGT+AGG - chr7_4:50849384-50849403 None:intergenic 60.0%
CCTACTGAATGCCGCGTCTG+TGG + chr7_4:50849381-50849400 Msa1160770:CDS 60.0%
GCCTGAAGCTCTCACAGCCT+GGG - chr7_4:50850627-50850646 None:intergenic 60.0%
TGCCTGAAGCTCTCACAGCC+TGG - chr7_4:50850628-50850647 None:intergenic 60.0%
TTAGTGGCGGCAAGGGCGAC+GGG - chr7_4:50846892-50846911 None:intergenic 65.0%
CTTAGTGGCGGCAAGGGCGA+CGG - chr7_4:50846893-50846912 None:intergenic 65.0%
!! CGCGGAGGCGTCTACGATAC+TGG - chr7_4:50848108-50848127 None:intergenic 65.0%
! CATTGGAAGCAAGGGCGCGG+AGG - chr7_4:50848123-50848142 None:intergenic 65.0%
GCCCAGGCTGTGAGAGCTTC+AGG + chr7_4:50850623-50850642 Msa1160770:CDS 65.0%
TAGTGGCGGCAAGGGCGACG+GGG - chr7_4:50846891-50846910 None:intergenic 70.0%
! AGGGAACACCGGTTGGGGGC+AGG + chr7_4:50847392-50847411 Msa1160770:intron 70.0%
! GGGAACACCGGTTGGGGGCA+GGG + chr7_4:50847393-50847412 Msa1160770:intron 70.0%
AGGGCGACGGGGCTCAGCGT+TGG - chr7_4:50846880-50846899 None:intergenic 75.0%
! ACACCGGTTGGGGGCAGGGC+AGG + chr7_4:50847397-50847416 Msa1160770:intron 75.0%
CCACCTGCCCTGCCCCCAAC+CGG - chr7_4:50847403-50847422 None:intergenic 75.0%
! CCGGTTGGGGGCAGGGCAGG+TGG + chr7_4:50847400-50847419 Msa1160770:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 50846813 50851101 50846813 ID=Msa1160770;Name=Msa1160770
chr7_4 mRNA 50846813 50851101 50846813 ID=Msa1160770-mRNA-1;Parent=Msa1160770;Name=Msa1160770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=167|1|1|1|0.75|0.8|5|426|426
chr7_4 exon 50846813 50846932 50846813 ID=Msa1160770-mRNA-1:exon:14214;Parent=Msa1160770-mRNA-1
chr7_4 exon 50847876 50848207 50847876 ID=Msa1160770-mRNA-1:exon:14215;Parent=Msa1160770-mRNA-1
chr7_4 exon 50848617 50849078 50848617 ID=Msa1160770-mRNA-1:exon:14216;Parent=Msa1160770-mRNA-1
chr7_4 exon 50849183 50849558 50849183 ID=Msa1160770-mRNA-1:exon:14217;Parent=Msa1160770-mRNA-1
chr7_4 exon 50850518 50851101 50850518 ID=Msa1160770-mRNA-1:exon:14218;Parent=Msa1160770-mRNA-1
chr7_4 five_prime_UTR 50846813 50846932 50846813 ID=Msa1160770-mRNA-1:five_prime_utr;Parent=Msa1160770-mRNA-1
chr7_4 five_prime_UTR 50847876 50847922 50847876 ID=Msa1160770-mRNA-1:five_prime_utr;Parent=Msa1160770-mRNA-1
chr7_4 CDS 50847923 50848207 50847923 ID=Msa1160770-mRNA-1:cds;Parent=Msa1160770-mRNA-1
chr7_4 CDS 50848617 50849078 50848617 ID=Msa1160770-mRNA-1:cds;Parent=Msa1160770-mRNA-1
chr7_4 CDS 50849183 50849558 50849183 ID=Msa1160770-mRNA-1:cds;Parent=Msa1160770-mRNA-1
chr7_4 CDS 50850518 50850675 50850518 ID=Msa1160770-mRNA-1:cds;Parent=Msa1160770-mRNA-1
chr7_4 three_prime_UTR 50850676 50851101 50850676 ID=Msa1160770-mRNA-1:three_prime_utr;Parent=Msa1160770-mRNA-1
Gene Sequence

>Msa1160770

ATGAATAACATTGCTGGGAGACCACTTAATGGAGATTTAGAAGATGATGATGAAGATGAAGCTAATGATGACGGCCTTGAAGCATGGGAGAGAGCTTATACAGAAGATAGATCATGGGAGTCTTTGCAGGAAGATGAATCTGGACTTCTTCGTCCCATAGATACGACAGCCATTCATCATGCCCAGTATCGTAGACGCCTCCGCGCCCTTGCTTCCAATGCAGCTACTGCGCGAATTCAAAAGGGTTTGATACGATACTTATACATTGTTGTGGACCTGTCCAAGGCAGCTTCAGAGAGGGACTTTCGACCAAGTAGAATGGCTGTTATTGCAAAGCAGGTTGAGTTATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGTTTGGTGACTACCAAAGATGGGGTAGCTAATTGCTTGACAGATCTTGGTGGCAGTCCTGAATCACATATCAAAGCTTTGATGGGTAAACTAGAATGCTCAGGTGATGCCTCCCTACAAAATGCACTAGAACTTGTTCATAGCAATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATTTTATATTCGGCCCTCAGTACATGTGATCCTGGTGATCTCATGGAAACTATCCAAAAATGCAAAAAGAGTAAAATAAGATGCTCGGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAGCATCTTTGCCAAGAAACTGGAGGAACGTATTCAGTTGCACTAGATGAGTCCCACTTTAAAGAGTTAATTCTTGAGCATTCTCCACCACCTCCAGCAATAGCAGAGTATGCTACGGCTAATTTGATTAAGATGGGTTTCCCGCAAAGAGCAGCTGAGGGTTCCGTTGCAATTTGTACATGTCATGAAGAGGCCAAAACTGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGCCGCGTCTGTGGATTGACCCTTATTTCTTCGCCCCATTTGGCAAGGTCATATCATCATCTCTTCCCTATAGTGCCATTTGCTGAGATCTCTCCATCATCTCAAAATGATCCAAGCCATAGTTTTCCCAATACTTGTTTTGGTTGTCAACAAAGTCTCCTTAGTCAGGGTTTTGGAGCAGGAAACAAGGCTGAACTTTCCGTCTCTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGTGACATGTACATTCATGAGAGCTTACATAATTGCCCAGGCTGTGAGAGCTTCAGGCATTCTAAGTCAGTTACTACTGCCCAATGA
Protein sequence

>Msa1160770

MNNIAGRPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPSHSFPNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSKSVTTAQ*