Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1174980 | sp|P0DO12|FLZ18_ARATH | 51.261 | 119 | 53 | 4 | 1 | 116 | 4 | 120 | 1.54e-32 | 114 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1174980 | G7L953 | 97.521 | 121 | 3 | 0 | 1 | 121 | 1 | 121 | 4.38e-79 | 238 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0054310 | Msa1174980 | 0.810275 | 1.249755e-50 | -8.615850e-47 |
Msa0135820 | Msa1174980 | 0.811418 | 7.072174e-51 | -8.615850e-47 |
Msa0136070 | Msa1174980 | 0.802839 | 4.636340e-49 | -8.615850e-47 |
Msa0148720 | Msa1174980 | 0.801767 | 7.709800e-49 | -8.615850e-47 |
Msa0183300 | Msa1174980 | -0.809541 | 1.797972e-50 | -8.615850e-47 |
Msa0212310 | Msa1174980 | 0.807145 | 5.830161e-50 | -8.615850e-47 |
Msa0222890 | Msa1174980 | 0.803260 | 3.795475e-49 | -8.615850e-47 |
Msa0243890 | Msa1174980 | 0.825805 | 3.835869e-54 | -8.615850e-47 |
Msa1174980 | Msa1175000 | 0.895950 | 5.884424e-76 | -8.615850e-47 |
Msa1174980 | Msa1249490 | 0.801271 | 9.742288e-49 | -8.615850e-47 |
Msa1174980 | Msa1344010 | 0.815168 | 1.061468e-51 | -8.615850e-47 |
Msa1174980 | Msa1344130 | 0.800804 | 1.213495e-48 | -8.615850e-47 |
Msa0483650 | Msa1174980 | 0.803140 | 4.017770e-49 | -8.615850e-47 |
Msa0868020 | Msa1174980 | 0.800167 | 1.636192e-48 | -8.615850e-47 |
Msa0935910 | Msa1174980 | 0.800860 | 1.182077e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1174980 | MtrunA17_Chr8g0344991 | 97.521 | 121 | 3 | 0 | 1 | 121 | 1 | 121 | 8.44e-83 | 238 |
Msa1174980 | MtrunA17_Chr3g0124361 | 42.105 | 76 | 44 | 0 | 7 | 82 | 92 | 167 | 8.49e-16 | 69.7 |
Msa1174980 | MtrunA17_Chr2g0295651 | 41.892 | 74 | 43 | 0 | 6 | 79 | 31 | 104 | 1.09e-14 | 65.9 |
Msa1174980 | MtrunA17_Chr4g0055191 | 63.636 | 44 | 16 | 0 | 39 | 82 | 73 | 116 | 2.02e-14 | 65.5 |
Msa1174980 | MtrunA17_Chr4g0067541 | 40.000 | 80 | 37 | 2 | 17 | 89 | 33 | 108 | 4.65e-14 | 63.5 |
Msa1174980 | MtrunA17_Chr4g0070221 | 46.377 | 69 | 23 | 2 | 39 | 107 | 178 | 232 | 2.20e-13 | 64.3 |
Msa1174980 | MtrunA17_Chr8g0336591 | 53.571 | 56 | 24 | 1 | 39 | 92 | 38 | 93 | 9.34e-13 | 60.1 |
Msa1174980 | MtrunA17_Chr3g0115551 | 54.545 | 44 | 20 | 0 | 39 | 82 | 90 | 133 | 1.28e-12 | 60.8 |
Msa1174980 | MtrunA17_Chr7g0260011 | 54.348 | 46 | 21 | 0 | 39 | 84 | 215 | 260 | 8.45e-12 | 60.1 |
Msa1174980 | MtrunA17_Chr5g0400051 | 61.364 | 44 | 16 | 1 | 39 | 82 | 85 | 127 | 2.33e-11 | 57.8 |
Msa1174980 | MtrunA17_Chr2g0301141 | 59.091 | 44 | 17 | 1 | 39 | 82 | 186 | 228 | 5.35e-11 | 57.8 |
Msa1174980 | MtrunA17_Chr1g0148411 | 52.941 | 51 | 22 | 1 | 39 | 89 | 275 | 323 | 7.61e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1174980 | AT1G53885.1 | 51.261 | 119 | 53 | 4 | 1 | 116 | 4 | 120 | 1.57e-33 | 114 |
Msa1174980 | AT1G53903.1 | 51.261 | 119 | 53 | 4 | 1 | 116 | 4 | 120 | 1.57e-33 | 114 |
Msa1174980 | AT5G65040.1 | 65.116 | 43 | 15 | 0 | 39 | 81 | 57 | 99 | 5.61e-15 | 66.2 |
Msa1174980 | AT1G22160.1 | 59.091 | 44 | 18 | 0 | 39 | 82 | 78 | 121 | 2.14e-14 | 65.5 |
Msa1174980 | AT5G49120.1 | 54.167 | 48 | 22 | 0 | 36 | 83 | 65 | 112 | 3.60e-14 | 65.1 |
Msa1174980 | AT1G78020.1 | 59.091 | 44 | 18 | 0 | 39 | 82 | 89 | 132 | 5.47e-14 | 64.7 |
Msa1174980 | AT2G44670.1 | 59.091 | 44 | 18 | 0 | 39 | 82 | 16 | 59 | 2.51e-13 | 61.2 |
Msa1174980 | AT4G39795.1 | 55.814 | 43 | 19 | 0 | 39 | 81 | 73 | 115 | 9.22e-13 | 60.8 |
Msa1174980 | AT4G17670.1 | 55.357 | 56 | 21 | 1 | 39 | 90 | 76 | 131 | 1.84e-12 | 60.8 |
Msa1174980 | AT5G47060.2 | 61.364 | 44 | 17 | 0 | 39 | 82 | 97 | 140 | 6.47e-12 | 59.7 |
Msa1174980 | AT5G47060.1 | 61.364 | 44 | 17 | 0 | 39 | 82 | 97 | 140 | 6.47e-12 | 59.7 |
Find 15 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTCTTTGAGCTGATAATT+TGG | 0.208127 | 8_1:+6215645 | None:intergenic |
CAGGAACAGACAAATAGTTT+TGG | 0.346572 | 8_1:-6214661 | Msa1174980:CDS |
TACATGTAAATATCTTTGTC+TGG | 0.359115 | 8_1:+6215518 | None:intergenic |
TTAAGGAAGCAGAAATCAAT+AGG | 0.365984 | 8_1:+6215572 | None:intergenic |
AGAAATCAATAGGTATGGTT+TGG | 0.393389 | 8_1:+6215582 | None:intergenic |
TTATTATGCAGGGGTGATCA+AGG | 0.486797 | 8_1:-6214702 | Msa1174980:intron |
ACAAAGATATTTACATGTAC+AGG | 0.496534 | 8_1:-6215514 | Msa1174980:intron |
TATAGTATCACCATGGAAGT+TGG | 0.509119 | 8_1:-6215683 | None:intergenic |
TTGAGCTGATAATTTGGAGA+AGG | 0.510013 | 8_1:+6215651 | None:intergenic |
GAAGCAGAAATCAATAGGTA+TGG | 0.532981 | 8_1:+6215577 | None:intergenic |
GAGACTTAGACCAACTTCCA+TGG | 0.574855 | 8_1:+6215673 | None:intergenic |
ACATGTAAATATCTTTGTCT+GGG | 0.575313 | 8_1:+6215519 | None:intergenic |
GTTTCTGCAGTATAGAGTGC+AGG | 0.581254 | 8_1:-6214680 | Msa1174980:CDS |
TTATAGACAATGTAGTAATG+AGG | 0.609088 | 8_1:-6214592 | Msa1174980:CDS |
AGAGACACGTCTTATACTTG+AGG | 0.618514 | 8_1:-6214562 | Msa1174980:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGAGCAAATATATTATTTTT+TGG | - | chr8_1:6214769-6214788 | Msa1174980:intron | 15.0% |
!!! | GAGCAAATATATTATTTTTT+GGG | - | chr8_1:6214770-6214789 | Msa1174980:intron | 15.0% |
!!! | ATATCATCTTATTTTTAGTA+TGG | + | chr8_1:6215374-6215393 | None:intergenic | 15.0% |
!!! | AGAGCAAATATATTATTTTT+TGG | - | chr8_1:6214769-6214788 | Msa1174980:intron | 15.0% |
!!! | GAGCAAATATATTATTTTTT+GGG | - | chr8_1:6214770-6214789 | Msa1174980:intron | 15.0% |
!!! | ATATCATCTTATTTTTAGTA+TGG | + | chr8_1:6215374-6215393 | None:intergenic | 15.0% |
!!! | AAAATAGTATCGATCAAAAT+CGG | + | chr8_1:6215131-6215150 | None:intergenic | 20.0% |
!!! | ATAACATTGTACCATTTTTT+TGG | + | chr8_1:6215590-6215609 | None:intergenic | 20.0% |
!!! | AAAATAGTATCGATCAAAAT+CGG | + | chr8_1:6215131-6215150 | None:intergenic | 20.0% |
!!! | ATAACATTGTACCATTTTTT+TGG | + | chr8_1:6215590-6215609 | None:intergenic | 20.0% |
! | ACATGTAAATATCTTTGTCT+GGG | + | chr8_1:6214682-6214701 | None:intergenic | 25.0% |
! | TACATGTAAATATCTTTGTC+TGG | + | chr8_1:6214683-6214702 | None:intergenic | 25.0% |
! | ACAAAGATATTTACATGTAC+AGG | - | chr8_1:6214684-6214703 | Msa1174980:CDS | 25.0% |
! | TGGAATAAAAAAAGAGAGTA+TGG | + | chr8_1:6214728-6214747 | None:intergenic | 25.0% |
! | CTAAAGCAATTTCAATTTAC+TGG | - | chr8_1:6215052-6215071 | Msa1174980:intron | 25.0% |
! | TTTACAATACAACCTCAATT+GGG | + | chr8_1:6215263-6215282 | None:intergenic | 25.0% |
! | ATTAAGAAAGGTTAGATCAT+GGG | + | chr8_1:6215341-6215360 | None:intergenic | 25.0% |
! | AATTAAGAAAGGTTAGATCA+TGG | + | chr8_1:6215342-6215361 | None:intergenic | 25.0% |
! | GGATTTGATAGAATTAAGAA+AGG | + | chr8_1:6215353-6215372 | None:intergenic | 25.0% |
!!! | TATGTTGGTAATTATTATGC+AGG | - | chr8_1:6215485-6215504 | Msa1174980:intron | 25.0% |
!!! | ATGTTGGTAATTATTATGCA+GGG | - | chr8_1:6215486-6215505 | Msa1174980:intron | 25.0% |
! | TTATAGACAATGTAGTAATG+AGG | - | chr8_1:6215606-6215625 | Msa1174980:CDS | 25.0% |
! | ACATGTAAATATCTTTGTCT+GGG | + | chr8_1:6214682-6214701 | None:intergenic | 25.0% |
! | TACATGTAAATATCTTTGTC+TGG | + | chr8_1:6214683-6214702 | None:intergenic | 25.0% |
! | ACAAAGATATTTACATGTAC+AGG | - | chr8_1:6214684-6214703 | Msa1174980:CDS | 25.0% |
! | TGGAATAAAAAAAGAGAGTA+TGG | + | chr8_1:6214728-6214747 | None:intergenic | 25.0% |
! | CTAAAGCAATTTCAATTTAC+TGG | - | chr8_1:6215052-6215071 | Msa1174980:intron | 25.0% |
! | TTTACAATACAACCTCAATT+GGG | + | chr8_1:6215263-6215282 | None:intergenic | 25.0% |
! | ATTAAGAAAGGTTAGATCAT+GGG | + | chr8_1:6215341-6215360 | None:intergenic | 25.0% |
! | AATTAAGAAAGGTTAGATCA+TGG | + | chr8_1:6215342-6215361 | None:intergenic | 25.0% |
! | GGATTTGATAGAATTAAGAA+AGG | + | chr8_1:6215353-6215372 | None:intergenic | 25.0% |
!!! | TATGTTGGTAATTATTATGC+AGG | - | chr8_1:6215485-6215504 | Msa1174980:intron | 25.0% |
!!! | ATGTTGGTAATTATTATGCA+GGG | - | chr8_1:6215486-6215505 | Msa1174980:intron | 25.0% |
! | TTATAGACAATGTAGTAATG+AGG | - | chr8_1:6215606-6215625 | Msa1174980:CDS | 25.0% |
TACTCTTTGAGCTGATAATT+TGG | + | chr8_1:6214556-6214575 | None:intergenic | 30.0% | |
AGAAATCAATAGGTATGGTT+TGG | + | chr8_1:6214619-6214638 | None:intergenic | 30.0% | |
TTAAGGAAGCAGAAATCAAT+AGG | + | chr8_1:6214629-6214648 | None:intergenic | 30.0% | |
! | TACACAGATTGCAAGTTTTA+AGG | + | chr8_1:6214646-6214665 | None:intergenic | 30.0% |
TTGCTCTATACTTAAGAAGT+TGG | + | chr8_1:6214756-6214775 | None:intergenic | 30.0% | |
!!! | ATTTTTTGGGTGAGCTAATT+AGG | - | chr8_1:6214783-6214802 | Msa1174980:intron | 30.0% |
!! | CTTCATTAGTCTTGATGATT+TGG | - | chr8_1:6214837-6214856 | Msa1174980:intron | 30.0% |
TTATAGTTTCAAATTAGCCG+CGG | - | chr8_1:6214976-6214995 | Msa1174980:intron | 30.0% | |
! | CACATTTTATTGCAGTATCA+TGG | + | chr8_1:6215031-6215050 | None:intergenic | 30.0% |
GTTTACAATACAACCTCAAT+TGG | + | chr8_1:6215264-6215283 | None:intergenic | 30.0% | |
TTAAGAAAGGTTAGATCATG+GGG | + | chr8_1:6215340-6215359 | None:intergenic | 30.0% | |
CATAATGTTTCATCAGATCA+AGG | + | chr8_1:6215469-6215488 | None:intergenic | 30.0% | |
GATCTGATGAAACATTATGT+TGG | - | chr8_1:6215470-6215489 | Msa1174980:intron | 30.0% | |
!! | TGTTGGTAATTATTATGCAG+GGG | - | chr8_1:6215487-6215506 | Msa1174980:intron | 30.0% |
AGAGACATCTACCAAAAAAA+TGG | - | chr8_1:6215576-6215595 | Msa1174980:CDS | 30.0% | |
TACTCTTTGAGCTGATAATT+TGG | + | chr8_1:6214556-6214575 | None:intergenic | 30.0% | |
AGAAATCAATAGGTATGGTT+TGG | + | chr8_1:6214619-6214638 | None:intergenic | 30.0% | |
TTAAGGAAGCAGAAATCAAT+AGG | + | chr8_1:6214629-6214648 | None:intergenic | 30.0% | |
! | TACACAGATTGCAAGTTTTA+AGG | + | chr8_1:6214646-6214665 | None:intergenic | 30.0% |
TTGCTCTATACTTAAGAAGT+TGG | + | chr8_1:6214756-6214775 | None:intergenic | 30.0% | |
!!! | ATTTTTTGGGTGAGCTAATT+AGG | - | chr8_1:6214783-6214802 | Msa1174980:intron | 30.0% |
!! | CTTCATTAGTCTTGATGATT+TGG | - | chr8_1:6214837-6214856 | Msa1174980:intron | 30.0% |
TTATAGTTTCAAATTAGCCG+CGG | - | chr8_1:6214976-6214995 | Msa1174980:intron | 30.0% | |
! | CACATTTTATTGCAGTATCA+TGG | + | chr8_1:6215031-6215050 | None:intergenic | 30.0% |
GTTTACAATACAACCTCAAT+TGG | + | chr8_1:6215264-6215283 | None:intergenic | 30.0% | |
TTAAGAAAGGTTAGATCATG+GGG | + | chr8_1:6215340-6215359 | None:intergenic | 30.0% | |
CATAATGTTTCATCAGATCA+AGG | + | chr8_1:6215469-6215488 | None:intergenic | 30.0% | |
GATCTGATGAAACATTATGT+TGG | - | chr8_1:6215470-6215489 | Msa1174980:intron | 30.0% | |
!! | TGTTGGTAATTATTATGCAG+GGG | - | chr8_1:6215487-6215506 | Msa1174980:intron | 30.0% |
AGAGACATCTACCAAAAAAA+TGG | - | chr8_1:6215576-6215595 | Msa1174980:CDS | 30.0% | |
TTGAGCTGATAATTTGGAGA+AGG | + | chr8_1:6214550-6214569 | None:intergenic | 35.0% | |
! | TTTTCACTGCAGATTTGACA+AGG | + | chr8_1:6214589-6214608 | None:intergenic | 35.0% |
GAAGCAGAAATCAATAGGTA+TGG | + | chr8_1:6214624-6214643 | None:intergenic | 35.0% | |
TACTTAAGAAGTTGGCAAGT+TGG | + | chr8_1:6214748-6214767 | None:intergenic | 35.0% | |
GTATCATGGATCATTTCATG+AGG | + | chr8_1:6215017-6215036 | None:intergenic | 35.0% | |
!! | TAGTATCGATCAAAATCGGA+TGG | + | chr8_1:6215127-6215146 | None:intergenic | 35.0% |
! | TGCGTGACTTCATCATTTTA+TGG | - | chr8_1:6215220-6215239 | Msa1174980:intron | 35.0% |
! | TGACTTCATCATTTTATGGC+AGG | - | chr8_1:6215224-6215243 | Msa1174980:intron | 35.0% |
GTAAATCCAAATCCCAATTG+AGG | - | chr8_1:6215248-6215267 | Msa1174980:intron | 35.0% | |
ATACAACCTCAATTGGGATT+TGG | + | chr8_1:6215257-6215276 | None:intergenic | 35.0% | |
! | CAGGAACAGACAAATAGTTT+TGG | - | chr8_1:6215537-6215556 | Msa1174980:CDS | 35.0% |
TTGAGCTGATAATTTGGAGA+AGG | + | chr8_1:6214550-6214569 | None:intergenic | 35.0% | |
! | TTTTCACTGCAGATTTGACA+AGG | + | chr8_1:6214589-6214608 | None:intergenic | 35.0% |
GAAGCAGAAATCAATAGGTA+TGG | + | chr8_1:6214624-6214643 | None:intergenic | 35.0% | |
TACTTAAGAAGTTGGCAAGT+TGG | + | chr8_1:6214748-6214767 | None:intergenic | 35.0% | |
GTATCATGGATCATTTCATG+AGG | + | chr8_1:6215017-6215036 | None:intergenic | 35.0% | |
!! | TAGTATCGATCAAAATCGGA+TGG | + | chr8_1:6215127-6215146 | None:intergenic | 35.0% |
! | TGCGTGACTTCATCATTTTA+TGG | - | chr8_1:6215220-6215239 | Msa1174980:intron | 35.0% |
! | TGACTTCATCATTTTATGGC+AGG | - | chr8_1:6215224-6215243 | Msa1174980:intron | 35.0% |
GTAAATCCAAATCCCAATTG+AGG | - | chr8_1:6215248-6215267 | Msa1174980:intron | 35.0% | |
ATACAACCTCAATTGGGATT+TGG | + | chr8_1:6215257-6215276 | None:intergenic | 35.0% | |
! | CAGGAACAGACAAATAGTTT+TGG | - | chr8_1:6215537-6215556 | Msa1174980:CDS | 35.0% |
! | TATGTCTAGGACTGCATTCT+TGG | + | chr8_1:6215316-6215335 | None:intergenic | 40.0% |
TAGATCATGGGGTTATGTCT+AGG | + | chr8_1:6215329-6215348 | None:intergenic | 40.0% | |
TTATTATGCAGGGGTGATCA+AGG | - | chr8_1:6215496-6215515 | Msa1174980:intron | 40.0% | |
AGAGACACGTCTTATACTTG+AGG | - | chr8_1:6215636-6215655 | Msa1174980:CDS | 40.0% | |
! | TATGTCTAGGACTGCATTCT+TGG | + | chr8_1:6215316-6215335 | None:intergenic | 40.0% |
TAGATCATGGGGTTATGTCT+AGG | + | chr8_1:6215329-6215348 | None:intergenic | 40.0% | |
TTATTATGCAGGGGTGATCA+AGG | - | chr8_1:6215496-6215515 | Msa1174980:intron | 40.0% | |
AGAGACACGTCTTATACTTG+AGG | - | chr8_1:6215636-6215655 | Msa1174980:CDS | 40.0% | |
GTTTCTGCAGTATAGAGTGC+AGG | - | chr8_1:6215518-6215537 | Msa1174980:CDS | 45.0% | |
GTTTCTGCAGTATAGAGTGC+AGG | - | chr8_1:6215518-6215537 | Msa1174980:CDS | 45.0% | |
!! | AAAAATTAAAAGATATAAAT+AGG | + | chr8_1:6215421-6215440 | None:intergenic | 5.0% |
!! | AAAAATTAAAAGATATAAAT+AGG | + | chr8_1:6215421-6215440 | None:intergenic | 5.0% |
GGCATGTGTGATAGTTACCG+CGG | + | chr8_1:6214996-6215015 | None:intergenic | 50.0% | |
TCGATCAAAATCGGATGGCC+AGG | + | chr8_1:6215122-6215141 | None:intergenic | 50.0% | |
GGCATGTGTGATAGTTACCG+CGG | + | chr8_1:6214996-6215015 | None:intergenic | 50.0% | |
TCGATCAAAATCGGATGGCC+AGG | + | chr8_1:6215122-6215141 | None:intergenic | 50.0% | |
CACACTGCTCGTGAATCTCC+TGG | - | chr8_1:6215101-6215120 | Msa1174980:intron | 55.0% | |
CACACTGCTCGTGAATCTCC+TGG | - | chr8_1:6215101-6215120 | Msa1174980:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 6214527 | 6215693 | 6214527 | ID=Msa1174980;Name=Msa1174980 |
chr8_1 | mRNA | 6214527 | 6215693 | 6214527 | ID=Msa1174980-mRNA-1;Parent=Msa1174980;Name=Msa1174980-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|1|1|2|0|121 |
chr8_1 | exon | 6215515 | 6215693 | 6215515 | ID=Msa1174980-mRNA-1:exon:2184;Parent=Msa1174980-mRNA-1 |
chr8_1 | exon | 6214527 | 6214713 | 6214527 | ID=Msa1174980-mRNA-1:exon:2183;Parent=Msa1174980-mRNA-1 |
chr8_1 | CDS | 6215515 | 6215693 | 6215515 | ID=Msa1174980-mRNA-1:cds;Parent=Msa1174980-mRNA-1 |
chr8_1 | CDS | 6214527 | 6214713 | 6214527 | ID=Msa1174980-mRNA-1:cds;Parent=Msa1174980-mRNA-1 |
Gene Sequence |
Protein sequence |