AlfalfaGEDB | Msa1197170

M. sativa cultivar zhongmu-4 / Msa1197170

KEGG: -
GO: -
PFAM: PF02713.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197170	XP_013445999.1	93.367	392	20	1	1	392	1	386	0.0	759

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197170	A0A072TS56	93.367	392	20	1	1	392	1	386	0.0	759

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1197170	-0.800841	1.192460e-48	-8.615850e-47
Msa0223100	Msa1197170	0.828905	6.931237e-55	-8.615850e-47
Msa0223290	Msa1197170	0.821846	3.250019e-53	-8.615850e-47
Msa0223380	Msa1197170	0.800892	1.164199e-48	-8.615850e-47
Msa0275400	Msa1197170	-0.830695	2.541203e-55	-8.615850e-47
Msa0302650	Msa1197170	0.837244	5.826434e-57	-8.615850e-47
Msa0469910	Msa1197170	-0.801844	7.432904e-49	-8.615850e-47
Msa0505060	Msa1197170	0.826138	3.197012e-54	-8.615850e-47
Msa0575990	Msa1197170	-0.805576	1.248935e-49	-8.615850e-47
Msa0576100	Msa1197170	-0.803344	3.645825e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197170	MtrunA17_Chr8g0365771	93.367	392	20	1	1	392	1	386	0.0	759

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197170	AT1G70480.2	57.357	333	127	6	46	375	3	323	1.35e-126	368
Msa1197170	AT1G70480.1	60.129	311	109	6	68	375	7	305	6.65e-126	366
Msa1197170	AT1G23560.1	50.775	258	126	1	88	344	30	287	1.24e-93	284
Msa1197170	AT1G23560.2	50.775	258	126	1	88	344	30	287	1.24e-93	284
Msa1197170	AT1G23600.1	38.750	240	130	7	118	342	28	265	3.30e-52	175
Msa1197170	AT1G23690.1	40.367	218	117	5	126	331	44	260	4.95e-52	175
Msa1197170	AT1G23520.1	40.090	222	121	6	133	343	42	262	7.58e-51	172
Msa1197170	AT1G23690.2	38.532	218	116	5	126	331	44	255	1.71e-48	166
Msa1197170	AT1G23520.4	39.189	222	117	7	133	343	42	256	4.09e-47	162
Msa1197170	AT1G23640.1	39.013	223	122	6	132	342	42	262	3.56e-46	159

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Find 87 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGAAGGAATGAATT+GGG	0.369792	8_1:-47405899	Msa1197170:CDS
AAAATTTGAGGGCTGCTGGA+GGG	0.625928	8_1:-47404334	Msa1197170:CDS
AAACATGAAGGAATGAATTG+GGG	0.624768	8_1:-47405898	Msa1197170:CDS
AAATACCATGATATGGGAGG+TGG	0.553944	8_1:+47404168	None:intergenic
AACATGAAGGAATGAATTGG+GGG	0.686683	8_1:-47405897	Msa1197170:CDS
AAGATAGATAAGTAAGAAGA+AGG	0.492352	8_1:+47407325	None:intergenic
AAGTCCAAGGAAGAGATTCA+AGG	0.560700	8_1:-47404057	Msa1197170:CDS
AAGTTCAAGCAAACCAAGAC+AGG	0.515646	8_1:-47404366	Msa1197170:CDS
AATATGTGTACAAGAGGAAA+AGG	0.468904	8_1:-47404246	Msa1197170:CDS
ACAAGAGGAAAAGGAAGAAT+TGG	0.378739	8_1:-47404237	Msa1197170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAATGGTTTCAGCATAATA+AGG	+	chr8_1:47404112-47404131	None:intergenic	30.0%
GTATTCAATTAGGATTTCGA+AGG	-	chr8_1:47404351-47404370	Msa1197170:CDS	30.0%
TGTGACAATGTACAATATCA+AGG	+	chr8_1:47404589-47404608	None:intergenic	30.0%
GATAGAGGTAGTTATATTCT+AGG	+	chr8_1:47404799-47404818	None:intergenic	30.0%
CTACTACTATTACTATCTTC+AGG	+	chr8_1:47404862-47404881	None:intergenic	30.0%
CCAGAAAGAATGAAAAAGTT+AGG	-	chr8_1:47404980-47404999	Msa1197170:intron	30.0%
GAAAAAGTTAGGTTTCGAAA+AGG	-	chr8_1:47404991-47405010	Msa1197170:intron	30.0%
AGTAGATTAGCAAAACATGA+AGG	-	chr8_1:47405161-47405180	Msa1197170:intron	30.0%
CAAAACATGAAGGAATGAAT+TGG	-	chr8_1:47405171-47405190	Msa1197170:intron	30.0%
AAACATGAAGGAATGAATTG+GGG	-	chr8_1:47405173-47405192	Msa1197170:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	47403737	47407356	47403737	ID=Msa1197170;Name=Msa1197170
chr8_1	mRNA	47403737	47407356	47403737	ID=Msa1197170-mRNA-1;Parent=Msa1197170;Name=Msa1197170-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0.8\|0.83\|1\|0.8\|0.66\|6\|208\|392
chr8_1	exon	47403737	47404391	47403737	ID=Msa1197170-mRNA-1:exon:15022;Parent=Msa1197170-mRNA-1
chr8_1	exon	47404822	47404965	47404822	ID=Msa1197170-mRNA-1:exon:15021;Parent=Msa1197170-mRNA-1
chr8_1	exon	47405211	47405333	47405211	ID=Msa1197170-mRNA-1:exon:15020;Parent=Msa1197170-mRNA-1
chr8_1	exon	47405780	47405941	47405780	ID=Msa1197170-mRNA-1:exon:15019;Parent=Msa1197170-mRNA-1
chr8_1	exon	47406016	47406159	47406016	ID=Msa1197170-mRNA-1:exon:15018;Parent=Msa1197170-mRNA-1
chr8_1	exon	47407198	47407356	47407198	ID=Msa1197170-mRNA-1:exon:15017;Parent=Msa1197170-mRNA-1
chr8_1	CDS	47407198	47407356	47407198	ID=Msa1197170-mRNA-1:cds;Parent=Msa1197170-mRNA-1
chr8_1	CDS	47406016	47406159	47406016	ID=Msa1197170-mRNA-1:cds;Parent=Msa1197170-mRNA-1
chr8_1	CDS	47405780	47405941	47405780	ID=Msa1197170-mRNA-1:cds;Parent=Msa1197170-mRNA-1
chr8_1	CDS	47405211	47405333	47405211	ID=Msa1197170-mRNA-1:cds;Parent=Msa1197170-mRNA-1
chr8_1	CDS	47404822	47404965	47404822	ID=Msa1197170-mRNA-1:cds;Parent=Msa1197170-mRNA-1
chr8_1	CDS	47403945	47404391	47403945	ID=Msa1197170-mRNA-1:cds;Parent=Msa1197170-mRNA-1
chr8_1	three_prime_UTR	47403737	47403944	47403737	ID=Msa1197170-mRNA-1:three_prime_utr;Parent=Msa1197170-mRNA-1

Gene Sequence

>Msa1197170

ATGCACGTGCCTTCTTCTTACTTATCTATCTTCATCGCTCATCCTCCATACCTTTTCAATTCTCAATATTGTACAGTTGTAAGAGATATTACTTTTTCCCATTTCCAACTTCCAACTTTGAAGGCAAGTTCTCAAAACTTAATCATATCATTTTATCTTGTTTTTATGATGGGTGAATCAGAGGGTACCAAATTCAGCTTAGATGCCAGAAAGAATGAAAAAGTTAGGTTTCGAAAAGGATTGGATCCTGCAATATCTAAATTTTTTGTGCAGCTACCTCACAAGTTTCAAAATATTGTAAAGAATCAGATGAGTAGATTAGCAAAACATGAAGGAATGAATTGGGGGAGATCTGTTCAGAGAAATGGAAGTGTAGCTTTTAGTGCTTCTGAAGCTGAACTGAAGGAGCAAGTGCAAGCATGGAAAGAAAATCCTTCTTGGGTTGATAAGCCACCAGTAGTAGAGGTGACTGTTCCCAAAGGTTCTCTTTGCAACCTCAATGTAGAAGTTGATGTTGGGCTTCCCCCTGATGCAGTATATAATATAGTGATAGATCCTGATAATAGAAGAGTTTTCAAAAATATCAAAGAAGTGATATCCAGAAAAGTTTTGGTTGATGAGGGCCATAGGCAAGTGGTTGATCTTCAGCAAGCAGCTATTTGGAGATTTCTTTGGTGGTCTGGCACTATTTCCATTAATGTTTTGGTCGATCAAAACAGAAATGATTACTCTATGAAGTTCAAGCAAACCAAGACAGGATTCATGAAAAAATTTGAGGGCTGCTGGAGGGTAGAGCCTTTATTTGTCGACGAAGCAACATGTTATCCCTTTAAACCCGTAACAAAGGAAGATTACAATATGTGTACAAGAGGAAAAGGAAGAATTGGATCTAAAGTTCGCTTACAACAAATACTTCAGCCAGCCATTGTCCCTCCACCTCCCATATCATGGTATTTGAGAGGAATCACTTCCAAGACAACTGAAATGCTTATAACTGATCTACTTGCAGAAACTTCCAGAATCAGAGGAGGATATGAGGCTGAAAAGTCCAAGGAAGAGATTCAAGGAAAGCATGGTGAAAACTTGGACCTCATAGCTAACACGAATAACATTAAAGAGAGATGGATTTTAAGGAGAAAAAATGTGAAGCAGAGTCATAGAAGACTGTTAGACTGCTAA

Protein sequence

>Msa1197170

MHVPSSYLSIFIAHPPYLFNSQYCTVVRDITFSHFQLPTLKASSQNLIISFYLVFMMGESEGTKFSLDARKNEKVRFRKGLDPAISKFFVQLPHKFQNIVKNQMSRLAKHEGMNWGRSVQRNGSVAFSASEAELKEQVQAWKENPSWVDKPPVVEVTVPKGSLCNLNVEVDVGLPPDAVYNIVIDPDNRRVFKNIKEVISRKVLVDEGHRQVVDLQQAAIWRFLWWSGTISINVLVDQNRNDYSMKFKQTKTGFMKKFEGCWRVEPLFVDEATCYPFKPVTKEDYNMCTRGKGRIGSKVRLQQILQPAIVPPPPISWYLRGITSKTTEMLITDLLAETSRIRGGYEAEKSKEEIQGKHGENLDLIANTNNIKERWILRRKNVKQSHRRLLDC*