Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219110 | A0A072TS56 | 97.626 | 337 | 8 | 0 | 1 | 337 | 50 | 386 | 0.0 | 688 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1219110 | -0.818048 | 2.401740e-52 | -8.615850e-47 |
| Msa0032610 | Msa1219110 | 0.806382 | 8.453158e-50 | -8.615850e-47 |
| Msa0609970 | Msa1219110 | 0.825635 | 4.210938e-54 | -8.615850e-47 |
| Msa0638280 | Msa1219110 | 0.814384 | 1.583960e-51 | -8.615850e-47 |
| Msa0638320 | Msa1219110 | 0.811057 | 8.468522e-51 | -8.615850e-47 |
| Msa0643250 | Msa1219110 | 0.815718 | 8.008183e-52 | -8.615850e-47 |
| Msa0650620 | Msa1219110 | 0.815469 | 9.101050e-52 | -8.615850e-47 |
| Msa0664760 | Msa1219110 | 0.818392 | 2.007921e-52 | -8.615850e-47 |
| Msa0669850 | Msa1219110 | 0.808140 | 3.585506e-50 | -8.615850e-47 |
| Msa0677270 | Msa1219110 | 0.810382 | 1.185289e-50 | -8.615850e-47 |
| Msa0682950 | Msa1219110 | 0.814061 | 1.865884e-51 | -8.615850e-47 |
| Msa0694250 | Msa1219110 | 0.813228 | 2.846952e-51 | -8.615850e-47 |
| Msa0705600 | Msa1219110 | 0.801702 | 7.949572e-49 | -8.615850e-47 |
| Msa0743260 | Msa1219110 | 0.815692 | 8.116899e-52 | -8.615850e-47 |
| Msa0754720 | Msa1219110 | -0.807089 | 5.994050e-50 | -8.615850e-47 |
| Msa0790390 | Msa1219110 | -0.825141 | 5.509314e-54 | -8.615850e-47 |
| Msa0148120 | Msa1219110 | 0.815119 | 1.088256e-51 | -8.615850e-47 |
| Msa0156650 | Msa1219110 | -0.809316 | 2.010175e-50 | -8.615850e-47 |
| Msa0165970 | Msa1219110 | 0.802158 | 6.406384e-49 | -8.615850e-47 |
| Msa0170560 | Msa1219110 | -0.806795 | 6.914973e-50 | -8.615850e-47 |
| Msa0188630 | Msa1219110 | 0.808048 | 3.750718e-50 | -8.615850e-47 |
| Msa0188680 | Msa1219110 | -0.823573 | 1.288241e-53 | -8.615850e-47 |
| Msa0196020 | Msa1219110 | -0.800478 | 1.414575e-48 | -8.615850e-47 |
| Msa0208810 | Msa1219110 | 0.808641 | 2.802886e-50 | -8.615850e-47 |
| Msa0223100 | Msa1219110 | 0.808807 | 2.583162e-50 | -8.615850e-47 |
| Msa0223290 | Msa1219110 | 0.831042 | 2.088086e-55 | -8.615850e-47 |
| Msa0223380 | Msa1219110 | 0.817411 | 3.344437e-52 | -8.615850e-47 |
| Msa0365490 | Msa1219110 | 0.824092 | 9.734496e-54 | -8.615850e-47 |
| Msa0380040 | Msa1219110 | 0.821373 | 4.179970e-53 | -8.615850e-47 |
| Msa0414950 | Msa1219110 | -0.822347 | 2.486863e-53 | -8.615850e-47 |
| Msa0420000 | Msa1219110 | 0.818361 | 2.040409e-52 | -8.615850e-47 |
| Msa0423360 | Msa1219110 | -0.811018 | 8.635632e-51 | -8.615850e-47 |
| Msa0429290 | Msa1219110 | 0.800737 | 1.252697e-48 | -8.615850e-47 |
| Msa0460930 | Msa1219110 | 0.801136 | 1.037936e-48 | -8.615850e-47 |
| Msa0464900 | Msa1219110 | 0.823281 | 1.507167e-53 | -8.615850e-47 |
| Msa0469910 | Msa1219110 | -0.827979 | 1.159678e-54 | -8.615850e-47 |
| Msa0475580 | Msa1219110 | 0.803426 | 3.506362e-49 | -8.615850e-47 |
| Msa0480320 | Msa1219110 | 0.832382 | 9.758339e-56 | -8.615850e-47 |
| Msa0993530 | Msa1219110 | 0.813319 | 2.718303e-51 | -8.615850e-47 |
| Msa1015060 | Msa1219110 | 0.819779 | 9.709487e-53 | -8.615850e-47 |
| Msa1040890 | Msa1219110 | 0.809379 | 1.948608e-50 | -8.615850e-47 |
| Msa1092820 | Msa1219110 | 0.804512 | 2.085240e-49 | -8.615850e-47 |
| Msa0270220 | Msa1219110 | -0.828785 | 7.410168e-55 | -8.615850e-47 |
| Msa0275400 | Msa1219110 | -0.824398 | 8.249981e-54 | -8.615850e-47 |
| Msa0276920 | Msa1219110 | 0.801889 | 7.276063e-49 | -8.615850e-47 |
| Msa0288240 | Msa1219110 | 0.803098 | 4.098799e-49 | -8.615850e-47 |
| Msa0288730 | Msa1219110 | 0.806516 | 7.919513e-50 | -8.615850e-47 |
| Msa0302650 | Msa1219110 | 0.834069 | 3.708924e-56 | -8.615850e-47 |
| Msa0307830 | Msa1219110 | -0.829004 | 6.560283e-55 | -8.615850e-47 |
| Msa0315240 | Msa1219110 | 0.824886 | 6.331731e-54 | -8.615850e-47 |
| Msa0320100 | Msa1219110 | 0.808081 | 3.690986e-50 | -8.615850e-47 |
| Msa0328210 | Msa1219110 | 0.805012 | 1.638875e-49 | -8.615850e-47 |
| Msa1113200 | Msa1219110 | 0.808433 | 3.104690e-50 | -8.615850e-47 |
| Msa1127830 | Msa1219110 | 0.807778 | 4.281365e-50 | -8.615850e-47 |
| Msa1130210 | Msa1219110 | -0.824597 | 7.406521e-54 | -8.615850e-47 |
| Msa1171770 | Msa1219110 | -0.807301 | 5.404634e-50 | -8.615850e-47 |
| Msa1193950 | Msa1219110 | -0.852398 | 4.740543e-61 | -8.615850e-47 |
| Msa1197170 | Msa1219110 | 0.851973 | 6.258291e-61 | -8.615850e-47 |
| Msa1217860 | Msa1219110 | 0.822992 | 1.760407e-53 | -8.615850e-47 |
| Msa1219110 | Msa1219520 | 0.815792 | 7.707876e-52 | -8.615850e-47 |
| Msa1219110 | Msa1249920 | 0.912241 | 2.439047e-83 | -8.615850e-47 |
| Msa1219110 | Msa1269580 | -0.804159 | 2.468844e-49 | -8.615850e-47 |
| Msa1219110 | Msa1291350 | 0.944305 | 2.486721e-103 | -8.615850e-47 |
| Msa1219110 | Msa1300860 | 0.845929 | 2.988908e-59 | -8.615850e-47 |
| Msa1219110 | Msa1403580 | -0.835016 | 2.144662e-56 | -8.615850e-47 |
| Msa1219110 | Msa1403930 | -0.841984 | 3.410865e-58 | -8.615850e-47 |
| Msa1219110 | Msa1409350 | 0.816277 | 6.007550e-52 | -8.615850e-47 |
| Msa1219110 | Msa1415130 | 0.811209 | 7.848703e-51 | -8.615850e-47 |
| Msa1219110 | Msa1439960 | 0.827559 | 1.463677e-54 | -8.615850e-47 |
| Msa1219110 | Msa1442220 | -0.816988 | 4.163885e-52 | -8.615850e-47 |
| Msa1219110 | Msa1443290 | -0.828438 | 8.991551e-55 | -8.615850e-47 |
| Msa1219110 | Msa1466090 | 0.802559 | 5.296826e-49 | -8.615850e-47 |
| Msa0505060 | Msa1219110 | 0.856585 | 2.913311e-62 | -8.615850e-47 |
| Msa0519220 | Msa1219110 | 0.807149 | 5.819962e-50 | -8.615850e-47 |
| Msa0526890 | Msa1219110 | 0.804180 | 2.444378e-49 | -8.615850e-47 |
| Msa0535030 | Msa1219110 | 0.808034 | 3.775471e-50 | -8.615850e-47 |
| Msa0535060 | Msa1219110 | 0.809143 | 2.188793e-50 | -8.615850e-47 |
| Msa0547400 | Msa1219110 | 0.823388 | 1.423060e-53 | -8.615850e-47 |
| Msa0553220 | Msa1219110 | -0.805868 | 1.084327e-49 | -8.615850e-47 |
| Msa0578090 | Msa1219110 | 0.800062 | 1.719189e-48 | -8.615850e-47 |
| Msa0579340 | Msa1219110 | 0.807201 | 5.674319e-50 | -8.615850e-47 |
| Msa0581920 | Msa1219110 | 0.830479 | 2.870206e-55 | -8.615850e-47 |
| Msa0591770 | Msa1219110 | 0.818742 | 1.672234e-52 | -8.615850e-47 |
| Msa0598460 | Msa1219110 | 0.800161 | 1.641184e-48 | -8.615850e-47 |
| Msa0602120 | Msa1219110 | 0.821943 | 3.085836e-53 | -8.615850e-47 |
| Msa0874500 | Msa1219110 | 0.813749 | 2.186429e-51 | -8.615850e-47 |
| Msa0908170 | Msa1219110 | 0.817720 | 2.849210e-52 | -8.615850e-47 |
| Msa0959010 | Msa1219110 | 0.813663 | 2.283968e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219110 | MtrunA17_Chr8g0365771 | 97.626 | 337 | 8 | 0 | 1 | 337 | 50 | 386 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1219110 | AT1G70480.1 | 60.129 | 311 | 109 | 6 | 13 | 320 | 7 | 305 | 3.65e-126 | 364 |
| Msa1219110 | AT1G70480.2 | 60.129 | 311 | 109 | 6 | 13 | 320 | 25 | 323 | 5.99e-126 | 364 |
| Msa1219110 | AT1G23560.1 | 50.388 | 258 | 127 | 1 | 33 | 289 | 30 | 287 | 1.58e-93 | 282 |
| Msa1219110 | AT1G23560.2 | 50.388 | 258 | 127 | 1 | 33 | 289 | 30 | 287 | 1.58e-93 | 282 |
| Msa1219110 | AT1G23690.1 | 40.367 | 218 | 117 | 5 | 71 | 276 | 44 | 260 | 2.87e-52 | 174 |
| Msa1219110 | AT1G23520.1 | 40.541 | 222 | 120 | 6 | 78 | 288 | 42 | 262 | 4.33e-52 | 173 |
| Msa1219110 | AT1G23600.1 | 38.333 | 240 | 131 | 7 | 63 | 287 | 28 | 265 | 4.80e-52 | 173 |
| Msa1219110 | AT1G23690.2 | 38.532 | 218 | 116 | 5 | 71 | 276 | 44 | 255 | 7.19e-49 | 165 |
| Msa1219110 | AT1G23520.4 | 39.640 | 222 | 116 | 7 | 78 | 288 | 42 | 256 | 2.39e-48 | 163 |
| Msa1219110 | AT1G23640.1 | 38.565 | 223 | 123 | 6 | 77 | 287 | 42 | 262 | 4.37e-46 | 157 |
| Msa1219110 | AT1G23670.2 | 40.171 | 234 | 124 | 8 | 69 | 288 | 32 | 263 | 5.64e-46 | 157 |
| Msa1219110 | AT1G23660.1 | 37.104 | 221 | 127 | 5 | 78 | 287 | 43 | 262 | 4.27e-45 | 155 |
| Msa1219110 | AT1G23690.4 | 40.000 | 175 | 96 | 3 | 111 | 276 | 1 | 175 | 3.47e-42 | 145 |
| Msa1219110 | AT2G27670.1 | 35.345 | 232 | 137 | 5 | 60 | 279 | 49 | 279 | 1.31e-40 | 144 |
| Msa1219110 | AT1G23645.1 | 45.395 | 152 | 77 | 3 | 140 | 287 | 75 | 224 | 7.82e-39 | 137 |
| Msa1219110 | AT1G23590.1 | 39.785 | 186 | 94 | 5 | 78 | 250 | 31 | 211 | 5.94e-38 | 135 |
| Msa1219110 | AT1G23600.2 | 42.667 | 150 | 84 | 2 | 140 | 287 | 70 | 219 | 1.17e-37 | 134 |
| Msa1219110 | AT1G23590.2 | 39.362 | 188 | 96 | 5 | 76 | 250 | 7 | 189 | 1.18e-37 | 134 |
| Msa1219110 | AT1G23670.1 | 43.506 | 154 | 82 | 4 | 140 | 288 | 65 | 218 | 1.58e-33 | 123 |
| Msa1219110 | AT1G23570.3 | 42.361 | 144 | 77 | 3 | 140 | 279 | 1 | 142 | 7.04e-33 | 120 |
| Msa1219110 | AT1G23690.3 | 33.649 | 211 | 93 | 6 | 71 | 276 | 44 | 212 | 1.03e-32 | 121 |
| Msa1219110 | AT1G23570.2 | 42.361 | 144 | 77 | 3 | 140 | 279 | 78 | 219 | 2.54e-32 | 121 |
| Msa1219110 | AT1G23570.1 | 42.657 | 143 | 76 | 3 | 141 | 279 | 77 | 217 | 7.18e-32 | 120 |
| Msa1219110 | AT1G23580.1 | 41.176 | 153 | 84 | 3 | 140 | 288 | 47 | 197 | 5.47e-31 | 117 |
| Msa1219110 | AT1G23520.2 | 38.333 | 120 | 64 | 4 | 78 | 188 | 42 | 160 | 2.94e-19 | 84.3 |
| Msa1219110 | AT1G23510.1 | 34.058 | 138 | 79 | 4 | 78 | 203 | 46 | 183 | 8.30e-17 | 78.2 |
| Msa1219110 | AT1G23510.3 | 33.577 | 137 | 79 | 4 | 79 | 203 | 1 | 137 | 3.24e-16 | 75.1 |
| Msa1219110 | AT1G23510.2 | 33.577 | 137 | 79 | 4 | 79 | 203 | 1 | 137 | 3.24e-16 | 75.1 |
Find 83 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTTGTTACAGGTTTAA+AGG | 0.168931 | 8_1:-81898283 | None:intergenic |
| CACTATTTCGATTAATGTTT+TGG | 0.189652 | 8_1:+81897703 | Msa1219110:CDS |
| TCTGGCATCTAAGCTGAATT+TGG | 0.201313 | 8_1:-81896428 | None:intergenic |
| AGTTGTTCAGATCACTTTAA+AGG | 0.213726 | 8_1:+81898682 | Msa1219110:three_prime_UTR |
| TTGTAATCTTCCTTTGTTAC+AGG | 0.228127 | 8_1:-81898291 | None:intergenic |
| TCCTCTCAAATACCATGATA+TGG | 0.256091 | 8_1:-81898397 | None:intergenic |
| ATCTTCAGCAAGCAGCTATT+TGG | 0.282634 | 8_1:+81897660 | Msa1219110:CDS |
| CTCATATCCTCCTCTGATTC+TGG | 0.288664 | 8_1:-81898472 | None:intergenic |
| CAGCTATTTGGAGATTTCTT+TGG | 0.298357 | 8_1:+81897672 | Msa1219110:CDS |
| AGTGATATCCAGAAAAGTTT+TGG | 0.302534 | 8_1:+81897610 | Msa1219110:CDS |
| CATGGAAAGAAAATCCTTCT+TGG | 0.315393 | 8_1:+81896735 | Msa1219110:CDS |
| CTTTCCTTGAATCTCTTCCT+TGG | 0.317797 | 8_1:-81898505 | None:intergenic |
| ATTGCAGGATCCAATCGTTT+TGG | 0.317967 | 8_1:-81896472 | None:intergenic |
| TCCTTTGTTACAGGTTTAAA+GGG | 0.337081 | 8_1:-81898282 | None:intergenic |
| CAAAACATGAAGGAATGAAT+TGG | 0.343925 | 8_1:+81896639 | Msa1219110:CDS |
| TGGAGATTTCTTTGGTGGTC+TGG | 0.348608 | 8_1:+81897680 | Msa1219110:CDS |
| AAAACATGAAGGAATGAATT+GGG | 0.369792 | 8_1:+81896640 | Msa1219110:CDS |
| GTTGCTTCGTCGACAAATAA+AGG | 0.370008 | 8_1:-81898252 | None:intergenic |
| GGGAGATCTGTTCAGAGAAA+TGG | 0.373735 | 8_1:+81896662 | Msa1219110:CDS |
| GAGGTTGCAAAGAGAACCTT+TGG | 0.374024 | 8_1:-81897248 | None:intergenic |
| TAAAGTGATCTGAACAACTA+TGG | 0.377847 | 8_1:-81898678 | None:intergenic |
| ACAAGAGGAAAAGGAAGAAT+TGG | 0.378739 | 8_1:+81898321 | Msa1219110:CDS |
| GAGAACTTGCCTTCAAAGTT+GGG | 0.380206 | 8_1:-81895327 | None:intergenic |
| ACTATATTATACACTGCATC+AGG | 0.392598 | 8_1:-81897298 | None:intergenic |
| TTGAAAACTCTTCTATTGTC+AGG | 0.399953 | 8_1:-81897328 | None:intergenic |
| GGCATGCCTTGTTATGTTAT+CGG | 0.418487 | 8_1:-81898792 | None:intergenic |
| TGAGAACTTGCCTTCAAAGT+TGG | 0.420746 | 8_1:-81895328 | None:intergenic |
| CTATTTGGAGATTTCTTTGG+TGG | 0.430423 | 8_1:+81897675 | Msa1219110:CDS |
| ATGGAAAGAAAATCCTTCTT+GGG | 0.431591 | 8_1:+81896736 | Msa1219110:CDS |
| TATAAGCATTTCAGTTGTCT+TGG | 0.439312 | 8_1:-81898427 | None:intergenic |
| AGTTAGGTTTCCAAAACGAT+TGG | 0.453278 | 8_1:+81896462 | Msa1219110:CDS |
| GGAGGTGGAGGGACAATGGC+TGG | 0.454095 | 8_1:-81898375 | None:intergenic |
| GGAGATCTGTTCAGAGAAAT+GGG | 0.464902 | 8_1:+81896663 | Msa1219110:CDS |
| AATATGTGTACAAGAGGAAA+AGG | 0.468904 | 8_1:+81898312 | Msa1219110:CDS |
| AGGAAAGCATGGTGAAAACT+TGG | 0.474837 | 8_1:+81898521 | Msa1219110:CDS |
| CCTCTCAAATACCATGATAT+GGG | 0.484566 | 8_1:-81898396 | None:intergenic |
| CTGATCCTCACCTCTACTAC+TGG | 0.485206 | 8_1:-81896770 | None:intergenic |
| TACCATGATATGGGAGGTGG+AGG | 0.496174 | 8_1:-81898387 | None:intergenic |
| TGTTATTCGTGTTAGCTATG+AGG | 0.499997 | 8_1:-81898545 | None:intergenic |
| CAGAATCAGAGGAGGATATG+AGG | 0.500535 | 8_1:+81898473 | Msa1219110:CDS |
| CTCGATGTAGAAGTTGATGT+TGG | 0.500638 | 8_1:+81897268 | Msa1219110:CDS |
| TCCCTTTAAACCTGTAACAA+AGG | 0.503671 | 8_1:+81898281 | Msa1219110:CDS |
| TCCCTCCACCTCCCATATCA+TGG | 0.510199 | 8_1:+81898385 | Msa1219110:CDS |
| TCGATGTAGAAGTTGATGTT+GGG | 0.514333 | 8_1:+81897269 | Msa1219110:CDS |
| AAGTTCAAGCAAACCAAGAC+AGG | 0.515646 | 8_1:+81898192 | Msa1219110:CDS |
| CAAGTTTCAAAATATTGTAA+AGG | 0.517134 | 8_1:+81896522 | Msa1219110:CDS |
| TGAAGGAGCAAGTGCAAGCA+TGG | 0.518952 | 8_1:+81896717 | Msa1219110:CDS |
| CGAATAACATTAAAGAGAGA+TGG | 0.528311 | 8_1:+81898559 | Msa1219110:CDS |
| AAATACCATGATATGGGAGG+TGG | 0.553944 | 8_1:-81898390 | None:intergenic |
| TTGAGAATTGAAAGGTATGG+AGG | 0.554883 | 8_1:-81895264 | None:intergenic |
| AAGTCCAAGGAAGAGATTCA+AGG | 0.560700 | 8_1:+81898501 | Msa1219110:CDS |
| TGCTTCTGAAGCTGAACTGA+AGG | 0.567738 | 8_1:+81896700 | Msa1219110:CDS |
| TGGCAGGTGACTGTTCCCAA+AGG | 0.577991 | 8_1:+81897232 | Msa1219110:intron |
| ATCCTCACCTCTACTACTGG+TGG | 0.584673 | 8_1:-81896767 | None:intergenic |
| ATCTTGAGAATTGAAAGGTA+TGG | 0.587078 | 8_1:-81895267 | None:intergenic |
| TATGGGAGGTGGAGGGACAA+TGG | 0.588925 | 8_1:-81898379 | None:intergenic |
| GAAGAGATTCAAGGAAAGCA+TGG | 0.592914 | 8_1:+81898510 | Msa1219110:CDS |
| GATTACAATATGTGTACAAG+AGG | 0.593335 | 8_1:+81898306 | Msa1219110:CDS |
| ACAATATCTTGAGAATTGAA+AGG | 0.596320 | 8_1:-81895272 | None:intergenic |
| CTATATTATACACTGCATCA+GGG | 0.597087 | 8_1:-81897297 | None:intergenic |
| TTTATGATGGGTGAATCAGA+GGG | 0.604683 | 8_1:+81896403 | Msa1219110:exon |
| TGAGAATTGAAAGGTATGGA+GGG | 0.605112 | 8_1:-81895263 | None:intergenic |
| CCCATATCATGGTATTTGAG+AGG | 0.605593 | 8_1:+81898396 | Msa1219110:CDS |
| AGTAGATTAGCAAAACATGA+AGG | 0.605643 | 8_1:+81896629 | Msa1219110:CDS |
| GGTGGCTTATCAACCCAAGA+AGG | 0.614982 | 8_1:-81896749 | None:intergenic |
| TGATAAGCCACCAGTAGTAG+AGG | 0.615534 | 8_1:+81896760 | Msa1219110:CDS |
| GCAGAAACTTCCAGAATCAG+AGG | 0.615549 | 8_1:+81898462 | Msa1219110:CDS |
| AGGTTGCAAAGAGAACCTTT+GGG | 0.616863 | 8_1:-81897247 | None:intergenic |
| TGGCTCAATGCATTCCAGTG+TGG | 0.617523 | 8_1:+81898753 | Msa1219110:three_prime_UTR |
| CAAACAATCTAAAACTACAA+TGG | 0.619354 | 8_1:-81898813 | None:intergenic |
| TATATTATACACTGCATCAG+GGG | 0.621873 | 8_1:-81897296 | None:intergenic |
| AAACATGAAGGAATGAATTG+GGG | 0.624768 | 8_1:+81896641 | Msa1219110:CDS |
| AAAATTTGAGGGCTGCTGGA+GGG | 0.625928 | 8_1:+81898224 | Msa1219110:CDS |
| CTCAAATACCATGATATGGG+AGG | 0.639863 | 8_1:-81898393 | None:intergenic |
| ATATGAGGCTGAAAAGTCCA+AGG | 0.654650 | 8_1:+81898488 | Msa1219110:CDS |
| ATATTATACACTGCATCAGG+GGG | 0.666209 | 8_1:-81897295 | None:intergenic |
| AACATGAAGGAATGAATTGG+GGG | 0.686683 | 8_1:+81896642 | Msa1219110:CDS |
| GTATCAAGAATTGACCACAC+TGG | 0.695140 | 8_1:-81898767 | None:intergenic |
| TGATGAGGGTCATAGGCAAG+TGG | 0.696850 | 8_1:+81897634 | Msa1219110:CDS |
| ATACATCCGATAACATAACA+AGG | 0.699983 | 8_1:+81898786 | Msa1219110:three_prime_UTR |
| GAAACTTCCAGAATCAGAGG+AGG | 0.702560 | 8_1:+81898465 | Msa1219110:CDS |
| ACCATGATATGGGAGGTGGA+GGG | 0.711287 | 8_1:-81898386 | None:intergenic |
| CAACATCAACTTCTACATCG+AGG | 0.754735 | 8_1:-81897267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTATTTTGAAAACT+CGG | + | chr8_1:81895608-81895627 | Msa1219110:intron | 10.0% |
| !!! | AACTATTTTTATAACTTTAA+AGG | + | chr8_1:81898649-81898668 | Msa1219110:three_prime_UTR | 10.0% |
| !! | TATGTTATAGGTTTAAAAAT+AGG | - | chr8_1:81896126-81896145 | None:intergenic | 15.0% |
| !! | ATATTCTAGGTTTAAAAAAT+AGG | - | chr8_1:81896252-81896271 | None:intergenic | 15.0% |
| !! | ATTATGTATTTGTAATATGA+AGG | + | chr8_1:81896347-81896366 | Msa1219110:intron | 15.0% |
| !!! | TCTAAATGATGTTTTTTTTT+TGG | + | chr8_1:81897581-81897600 | Msa1219110:intron | 15.0% |
| !!! | AATTCTAATTCTTCAATTTT+AGG | - | chr8_1:81897907-81897926 | None:intergenic | 15.0% |
| !!! | TAAAGACTTTTATATAACCA+TGG | + | chr8_1:81895896-81895915 | Msa1219110:intron | 20.0% |
| !! | TAAAACCTTGGTTTAAAAAT+GGG | - | chr8_1:81896015-81896034 | None:intergenic | 20.0% |
| !! | TTAAAACCTTGGTTTAAAAA+TGG | - | chr8_1:81896016-81896035 | None:intergenic | 20.0% |
| !! | AACCTATAACATAATAACAA+CGG | + | chr8_1:81896133-81896152 | Msa1219110:intron | 20.0% |
| !!! | CTATCTTCAGATAAATTTTA+AGG | - | chr8_1:81896316-81896335 | None:intergenic | 20.0% |
| !!! | CATTTTTCTTAAAAAATTCC+AGG | + | chr8_1:81896378-81896397 | Msa1219110:intron | 20.0% |
| !! | ACAAAAAATTTAGATATTGC+AGG | - | chr8_1:81896490-81896509 | None:intergenic | 20.0% |
| !! | CAAGTTTCAAAATATTGTAA+AGG | + | chr8_1:81896522-81896541 | Msa1219110:CDS | 20.0% |
| !! | TTACTGAAACATAAGATTAT+TGG | + | chr8_1:81896831-81896850 | Msa1219110:intron | 20.0% |
| !! | CTCAAAAAGTTTAAATCAAT+AGG | - | chr8_1:81897066-81897085 | None:intergenic | 20.0% |
| !!! | CATAAATGAAGTATCTAATA+AGG | + | chr8_1:81897100-81897119 | Msa1219110:intron | 20.0% |
| !! | AATTATTTCAATTCTTCTGA+AGG | - | chr8_1:81897177-81897196 | None:intergenic | 20.0% |
| !!! | TCTCAGTAAATGTTTTTTTT+TGG | + | chr8_1:81897212-81897231 | Msa1219110:intron | 20.0% |
| !!! | GTTTTCAAAAATATCAAAGT+AGG | + | chr8_1:81897343-81897362 | Msa1219110:intron | 20.0% |
| !!! | ATCCTTTTTCTTATAATGAA+TGG | + | chr8_1:81897762-81897781 | Msa1219110:intron | 20.0% |
| !! | ATCCATTCATTATAAGAAAA+AGG | - | chr8_1:81897767-81897786 | None:intergenic | 20.0% |
| !!! | ATCATACACACATTTTTTAA+CGG | + | chr8_1:81897934-81897953 | Msa1219110:intron | 20.0% |
| ! | ACAATATCTTGAGAATTGAA+AGG | - | chr8_1:81895275-81895294 | None:intergenic | 25.0% |
| ! | TTCAAATGAAGATACTTACA+AGG | - | chr8_1:81895375-81895394 | None:intergenic | 25.0% |
| ! | ATAATGGTTTCAGCATAATA+AGG | - | chr8_1:81895589-81895608 | None:intergenic | 25.0% |
| ! | TTGTGAGCAAAACATAATAA+CGG | - | chr8_1:81895737-81895756 | None:intergenic | 25.0% |
| !! | TTATTATGTTTTGCTCACAA+AGG | + | chr8_1:81895737-81895756 | Msa1219110:intron | 25.0% |
| ! | AATAAATTGCAGCTAACATA+TGG | - | chr8_1:81895770-81895789 | None:intergenic | 25.0% |
| ! | GGTATTAACTGTATTCAATT+AGG | + | chr8_1:81895817-81895836 | Msa1219110:intron | 25.0% |
| !! | AACCGTTGTTATTATGTTAT+AGG | - | chr8_1:81896138-81896157 | None:intergenic | 25.0% |
| ! | TAGAAAATCACAGTTAAATG+TGG | + | chr8_1:81896198-81896217 | Msa1219110:intron | 25.0% |
| ! | TTGTCATAAATTTCTCAACT+TGG | - | chr8_1:81896286-81896305 | None:intergenic | 25.0% |
| !! | AAAATTCCAGGTTTTTATGA+TGG | + | chr8_1:81896390-81896409 | Msa1219110:intron | 25.0% |
| !! | AAATTCCAGGTTTTTATGAT+GGG | + | chr8_1:81896391-81896410 | Msa1219110:intron | 25.0% |
| !!! | ACAATATTTTGAAACTTGTG+AGG | - | chr8_1:81896520-81896539 | None:intergenic | 25.0% |
| ! | AAAACATGAAGGAATGAATT+GGG | + | chr8_1:81896640-81896659 | Msa1219110:CDS | 25.0% |
| !!! | TGAATAGGATTGATTTTCTT+TGG | + | chr8_1:81896794-81896813 | Msa1219110:intron | 25.0% |
| !!! | AGTAAATGTTTTTTTTTGGC+AGG | + | chr8_1:81897216-81897235 | Msa1219110:intron | 25.0% |
| !!! | ATGATGTTTTTTTTTTGGTC+AGG | + | chr8_1:81897586-81897605 | Msa1219110:intron | 25.0% |
| !! | CACTATTTCGATTAATGTTT+TGG | + | chr8_1:81897703-81897722 | Msa1219110:CDS | 25.0% |
| !! | TGAATGGATTTCATATTTGT+TGG | + | chr8_1:81897778-81897797 | Msa1219110:intron | 25.0% |
| !!! | ATATTTGTTGGACAATTTTG+AGG | + | chr8_1:81897790-81897809 | Msa1219110:intron | 25.0% |
| !!! | ATTCTTCAATTTTAGGTAGT+TGG | - | chr8_1:81897900-81897919 | None:intergenic | 25.0% |
| !! | TACTTTTCATCCAACAAAAA+AGG | + | chr8_1:81898133-81898152 | Msa1219110:intron | 25.0% |
| !!! | AGATATACATCCTTTTTTGT+TGG | - | chr8_1:81898146-81898165 | None:intergenic | 25.0% |
| !!! | ATCTTACTGCTACTTAATTT+TGG | + | chr8_1:81898162-81898181 | Msa1219110:intron | 25.0% |
| ! | AGGATTCATGAAAAAATTTG+AGG | + | chr8_1:81898212-81898231 | Msa1219110:CDS | 25.0% |
| ! | GGATTCATGAAAAAATTTGA+GGG | + | chr8_1:81898213-81898232 | Msa1219110:CDS | 25.0% |
| !!! | TTAAAGAGAGATGGATTTTA+AGG | + | chr8_1:81898568-81898587 | Msa1219110:CDS | 25.0% |
| !!! | TGTTGATGTCACTAATTTTT+TGG | + | chr8_1:81898733-81898752 | Msa1219110:three_prime_UTR | 25.0% |
| !! | CAAACAATCTAAAACTACAA+TGG | - | chr8_1:81898816-81898835 | None:intergenic | 25.0% |
| !!! | CATTGTAGTTTTAGATTGTT+TGG | + | chr8_1:81898814-81898833 | Msa1219110:three_prime_UTR | 25.0% |
| ATCTTGAGAATTGAAAGGTA+TGG | - | chr8_1:81895270-81895289 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTCCCAACTTTGA+AGG | + | chr8_1:81895318-81895337 | Msa1219110:five_prime_UTR | 30.0% |
| !! | GTCATGCTTGTTCTAAATTT+TGG | + | chr8_1:81895487-81895506 | Msa1219110:intron | 30.0% |
| !!! | TGGTTTTTTTTCTTCATGTG+TGG | - | chr8_1:81895560-81895579 | None:intergenic | 30.0% |
| !! | TATTTTGAAAACTCGGTATC+CGG | + | chr8_1:81895615-81895634 | Msa1219110:intron | 30.0% |
| GGATCAATTGAAACTATGTA+TGG | + | chr8_1:81895679-81895698 | Msa1219110:intron | 30.0% | |
| !! | CTCATGAACTAACTTGTTAT+CGG | + | chr8_1:81895793-81895812 | Msa1219110:intron | 30.0% |
| !! | TCATGAACTAACTTGTTATC+GGG | + | chr8_1:81895794-81895813 | Msa1219110:intron | 30.0% |
| GTATTCAATTAGGATTTCGA+AGG | + | chr8_1:81895827-81895846 | Msa1219110:intron | 30.0% | |
| ! | TGCGTTCTAATTTAAAACCA+TGG | - | chr8_1:81895916-81895935 | None:intergenic | 30.0% |
| CAAGAAACAACAGTTAAATG+TGG | + | chr8_1:81895961-81895980 | Msa1219110:intron | 30.0% | |
| ! | TGTATCACGATTTAAAACCT+TGG | - | chr8_1:81896027-81896046 | None:intergenic | 30.0% |
| TGTGACAATGTACAATATCA+AGG | - | chr8_1:81896064-81896083 | None:intergenic | 30.0% | |
| AATTGTGTTTGAGGATGTAT+TGG | - | chr8_1:81896224-81896243 | None:intergenic | 30.0% | |
| TAAATTTCTCAACTTGGTAG+AGG | - | chr8_1:81896280-81896299 | None:intergenic | 30.0% | |
| !!! | CCTAACTTTTTCATTCTTTC+TGG | - | chr8_1:81896449-81896468 | None:intergenic | 30.0% |
| CCAGAAAGAATGAAAAAGTT+AGG | + | chr8_1:81896446-81896465 | Msa1219110:CDS | 30.0% | |
| ! | TAAACTTTTAGCCATAGGAT+TGG | - | chr8_1:81896555-81896574 | None:intergenic | 30.0% |
| AGTAGATTAGCAAAACATGA+AGG | + | chr8_1:81896629-81896648 | Msa1219110:CDS | 30.0% | |
| CAAAACATGAAGGAATGAAT+TGG | + | chr8_1:81896639-81896658 | Msa1219110:CDS | 30.0% | |
| AAACATGAAGGAATGAATTG+GGG | + | chr8_1:81896641-81896660 | Msa1219110:CDS | 30.0% | |
| ATGGAAAGAAAATCCTTCTT+GGG | + | chr8_1:81896736-81896755 | Msa1219110:CDS | 30.0% | |
| AAGGCATATGAAAGTTAAGT+TGG | - | chr8_1:81897158-81897177 | None:intergenic | 30.0% | |
| TATATTATACACTGCATCAG+GGG | - | chr8_1:81897299-81897318 | None:intergenic | 30.0% | |
| CTATATTATACACTGCATCA+GGG | - | chr8_1:81897300-81897319 | None:intergenic | 30.0% | |
| ACTATATTATACACTGCATC+AGG | - | chr8_1:81897301-81897320 | None:intergenic | 30.0% | |
| TTGAAAACTCTTCTATTGTC+AGG | - | chr8_1:81897331-81897350 | None:intergenic | 30.0% | |
| ! | AGTGATATCCAGAAAAGTTT+TGG | + | chr8_1:81897610-81897629 | Msa1219110:CDS | 30.0% |
| !!! | AGAAAAGTTTTGGTTGATGA+GGG | + | chr8_1:81897620-81897639 | Msa1219110:CDS | 30.0% |
| !!! | TTTTTTCATGAATCCTGTCT+TGG | - | chr8_1:81898208-81898227 | None:intergenic | 30.0% |
| TCCTTTGTTACAGGTTTAAA+GGG | - | chr8_1:81898285-81898304 | None:intergenic | 30.0% | |
| TTCCTTTGTTACAGGTTTAA+AGG | - | chr8_1:81898286-81898305 | None:intergenic | 30.0% | |
| TTGTAATCTTCCTTTGTTAC+AGG | - | chr8_1:81898294-81898313 | None:intergenic | 30.0% | |
| GATTACAATATGTGTACAAG+AGG | + | chr8_1:81898306-81898325 | Msa1219110:CDS | 30.0% | |
| AATATGTGTACAAGAGGAAA+AGG | + | chr8_1:81898312-81898331 | Msa1219110:CDS | 30.0% | |
| TATAAGCATTTCAGTTGTCT+TGG | - | chr8_1:81898430-81898449 | None:intergenic | 30.0% | |
| CGAATAACATTAAAGAGAGA+TGG | + | chr8_1:81898559-81898578 | Msa1219110:CDS | 30.0% | |
| TAAAGTGATCTGAACAACTA+TGG | - | chr8_1:81898681-81898700 | None:intergenic | 30.0% | |
| AGTTGTTCAGATCACTTTAA+AGG | + | chr8_1:81898682-81898701 | Msa1219110:three_prime_UTR | 30.0% | |
| ATACATCCGATAACATAACA+AGG | + | chr8_1:81898786-81898805 | Msa1219110:three_prime_UTR | 30.0% | |
| ! | TGAGAATTGAAAGGTATGGA+GGG | - | chr8_1:81895266-81895285 | None:intergenic | 35.0% |
| ! | TTGAGAATTGAAAGGTATGG+AGG | - | chr8_1:81895267-81895286 | None:intergenic | 35.0% |
| TCAGCATAATAAGGTGAAAC+TGG | - | chr8_1:81895580-81895599 | None:intergenic | 35.0% | |
| !! | CATGAACTAACTTGTTATCG+GGG | + | chr8_1:81895795-81895814 | Msa1219110:intron | 35.0% |
| !! | ATGAACTAACTTGTTATCGG+GGG | + | chr8_1:81895796-81895815 | Msa1219110:intron | 35.0% |
| TTTGCGATGAAAAAGTCTTG+TGG | + | chr8_1:81895866-81895885 | Msa1219110:intron | 35.0% | |
| ! | TAAAAATGGGTCTGGAATCA+CGG | - | chr8_1:81896002-81896021 | None:intergenic | 35.0% |
| GGTAGAGGTAGTTATATTCT+AGG | - | chr8_1:81896265-81896284 | None:intergenic | 35.0% | |
| ATTCACCCATCATAAAAACC+TGG | - | chr8_1:81896399-81896418 | None:intergenic | 35.0% | |
| !!! | TTTTATGATGGGTGAATCAG+AGG | + | chr8_1:81896402-81896421 | Msa1219110:exon | 35.0% |
| !! | TTTATGATGGGTGAATCAGA+GGG | + | chr8_1:81896403-81896422 | Msa1219110:exon | 35.0% |
| AGTTAGGTTTCCAAAACGAT+TGG | + | chr8_1:81896462-81896481 | Msa1219110:CDS | 35.0% | |
| AACATGAAGGAATGAATTGG+GGG | + | chr8_1:81896642-81896661 | Msa1219110:CDS | 35.0% | |
| CATGGAAAGAAAATCCTTCT+TGG | + | chr8_1:81896735-81896754 | Msa1219110:CDS | 35.0% | |
| GTACTCATAAGTGTTAGTGT+CGG | + | chr8_1:81896994-81897013 | Msa1219110:intron | 35.0% | |
| !! | TCGATGTAGAAGTTGATGTT+GGG | + | chr8_1:81897269-81897288 | Msa1219110:CDS | 35.0% |
| ATATTATACACTGCATCAGG+GGG | - | chr8_1:81897298-81897317 | None:intergenic | 35.0% | |
| TGCTCAATGTGTTTAGTTAC+AGG | + | chr8_1:81897388-81897407 | Msa1219110:intron | 35.0% | |
| GCTCAATGTGTTTAGTTACA+GGG | + | chr8_1:81897389-81897408 | Msa1219110:intron | 35.0% | |
| TGAAACAGAAACGTTCAGTT+TGG | + | chr8_1:81897465-81897484 | Msa1219110:intron | 35.0% | |
| ! | CTCATCAACCAAAACTTTTC+TGG | - | chr8_1:81897621-81897640 | None:intergenic | 35.0% |
| !!! | CAGAAAAGTTTTGGTTGATG+AGG | + | chr8_1:81897619-81897638 | Msa1219110:CDS | 35.0% |
| CAGCTATTTGGAGATTTCTT+TGG | + | chr8_1:81897672-81897691 | Msa1219110:CDS | 35.0% | |
| CTATTTGGAGATTTCTTTGG+TGG | + | chr8_1:81897675-81897694 | Msa1219110:CDS | 35.0% | |
| ACAGAAATGACTACTCTGTA+AGG | + | chr8_1:81897735-81897754 | Msa1219110:intron | 35.0% | |
| !! | ATTTGTTTCTACGACACCAA+GGG | - | chr8_1:81898042-81898061 | None:intergenic | 35.0% |
| !! | TTGGTGTCGTAGAAACAAAT+GGG | + | chr8_1:81898042-81898061 | Msa1219110:intron | 35.0% |
| TCGTAGTAACAAACAAGCAA+CGG | - | chr8_1:81898068-81898087 | None:intergenic | 35.0% | |
| TCCCTTTAAACCTGTAACAA+AGG | + | chr8_1:81898281-81898300 | Msa1219110:CDS | 35.0% | |
| ACAAGAGGAAAAGGAAGAAT+TGG | + | chr8_1:81898321-81898340 | Msa1219110:CDS | 35.0% | |
| CCTCTCAAATACCATGATAT+GGG | - | chr8_1:81898399-81898418 | None:intergenic | 35.0% | |
| TCCTCTCAAATACCATGATA+TGG | - | chr8_1:81898400-81898419 | None:intergenic | 35.0% | |
| TGTTATTCGTGTTAGCTATG+AGG | - | chr8_1:81898548-81898567 | None:intergenic | 35.0% | |
| GAGAACTTGCCTTCAAAGTT+GGG | - | chr8_1:81895330-81895349 | None:intergenic | 40.0% | |
| TGAGAACTTGCCTTCAAAGT+TGG | - | chr8_1:81895331-81895350 | None:intergenic | 40.0% | |
| AATTGATCCCTGCTAGTGAA+AGG | - | chr8_1:81895668-81895687 | None:intergenic | 40.0% | |
| ! | ATTAGAACGCACTCGTGTTT+TGG | + | chr8_1:81895925-81895944 | Msa1219110:intron | 40.0% |
| CCTTGGTTTAAAAATGGGTC+TGG | - | chr8_1:81896010-81896029 | None:intergenic | 40.0% | |
| !! | CCAGACCCATTTTTAAACCA+AGG | + | chr8_1:81896007-81896026 | Msa1219110:intron | 40.0% |
| TAGGTGTGCAATTGTGTTTG+AGG | - | chr8_1:81896233-81896252 | None:intergenic | 40.0% | |
| TCTGGCATCTAAGCTGAATT+TGG | - | chr8_1:81896431-81896450 | None:intergenic | 40.0% | |
| ! | ATTGCAGGATCCAATCGTTT+TGG | - | chr8_1:81896475-81896494 | None:intergenic | 40.0% |
| ! | CGTGCTAAACTTTTAGCCAT+AGG | - | chr8_1:81896560-81896579 | None:intergenic | 40.0% |
| GGAGATCTGTTCAGAGAAAT+GGG | + | chr8_1:81896663-81896682 | Msa1219110:CDS | 40.0% | |
| TCTTTAACCTGTTCCTGTCT+AGG | + | chr8_1:81896889-81896908 | Msa1219110:intron | 40.0% | |
| !! | TCGTTTTAGGTCCTTGTATG+TGG | - | chr8_1:81896923-81896942 | None:intergenic | 40.0% |
| AGGTTGCAAAGAGAACCTTT+GGG | - | chr8_1:81897250-81897269 | None:intergenic | 40.0% | |
| CAACATCAACTTCTACATCG+AGG | - | chr8_1:81897270-81897289 | None:intergenic | 40.0% | |
| !! | CTCGATGTAGAAGTTGATGT+TGG | + | chr8_1:81897268-81897287 | Msa1219110:CDS | 40.0% |
| !!! | TTTTGGTTGATGAGGGTCAT+AGG | + | chr8_1:81897627-81897646 | Msa1219110:CDS | 40.0% |
| ATCTTCAGCAAGCAGCTATT+TGG | + | chr8_1:81897660-81897679 | Msa1219110:CDS | 40.0% | |
| ! | CCAAGAGAGTCTTATAAGAG+AGG | - | chr8_1:81897828-81897847 | None:intergenic | 40.0% |
| CCTCTCTTATAAGACTCTCT+TGG | + | chr8_1:81897825-81897844 | Msa1219110:intron | 40.0% | |
| !! | CATTTGTTTCTACGACACCA+AGG | - | chr8_1:81898043-81898062 | None:intergenic | 40.0% |
| !! | CTTGGTGTCGTAGAAACAAA+TGG | + | chr8_1:81898041-81898060 | Msa1219110:intron | 40.0% |
| AAGTTCAAGCAAACCAAGAC+AGG | + | chr8_1:81898192-81898211 | Msa1219110:CDS | 40.0% | |
| TGAAAAAATTTGAGGGCTGC+TGG | + | chr8_1:81898220-81898239 | Msa1219110:CDS | 40.0% | |
| GTTGCTTCGTCGACAAATAA+AGG | - | chr8_1:81898255-81898274 | None:intergenic | 40.0% | |
| AAATACCATGATATGGGAGG+TGG | - | chr8_1:81898393-81898412 | None:intergenic | 40.0% | |
| CTCAAATACCATGATATGGG+AGG | - | chr8_1:81898396-81898415 | None:intergenic | 40.0% | |
| CCCATATCATGGTATTTGAG+AGG | + | chr8_1:81898396-81898415 | Msa1219110:CDS | 40.0% | |
| ATATGAGGCTGAAAAGTCCA+AGG | + | chr8_1:81898488-81898507 | Msa1219110:CDS | 40.0% | |
| AAGTCCAAGGAAGAGATTCA+AGG | + | chr8_1:81898501-81898520 | Msa1219110:CDS | 40.0% | |
| CTTTCCTTGAATCTCTTCCT+TGG | - | chr8_1:81898508-81898527 | None:intergenic | 40.0% | |
| GAAGAGATTCAAGGAAAGCA+TGG | + | chr8_1:81898510-81898529 | Msa1219110:CDS | 40.0% | |
| ! | AGGAAAGCATGGTGAAAACT+TGG | + | chr8_1:81898521-81898540 | Msa1219110:CDS | 40.0% |
| GTATCAAGAATTGACCACAC+TGG | - | chr8_1:81898770-81898789 | None:intergenic | 40.0% | |
| ! | GGCATGCCTTGTTATGTTAT+CGG | - | chr8_1:81898795-81898814 | None:intergenic | 40.0% |
| AATCCCACCTTTCACTAGCA+GGG | + | chr8_1:81895658-81895677 | Msa1219110:intron | 45.0% | |
| TAACAATTCCCGTGTTGGGT+CGG | - | chr8_1:81895706-81895725 | None:intergenic | 45.0% | |
| AGCCTAACAATTCCCGTGTT+GGG | - | chr8_1:81895710-81895729 | None:intergenic | 45.0% | |
| CAGCTGATGCAGTCTCAATT+GGG | + | chr8_1:81896092-81896111 | Msa1219110:intron | 45.0% | |
| AAGGTCAGTCACCAATCCTA+TGG | + | chr8_1:81896541-81896560 | Msa1219110:intron | 45.0% | |
| GGGAGATCTGTTCAGAGAAA+TGG | + | chr8_1:81896662-81896681 | Msa1219110:CDS | 45.0% | |
| !! | TGCTTCTGAAGCTGAACTGA+AGG | + | chr8_1:81896700-81896719 | Msa1219110:CDS | 45.0% |
| TGATAAGCCACCAGTAGTAG+AGG | + | chr8_1:81896760-81896779 | Msa1219110:CDS | 45.0% | |
| GAGGTGAGGATCAGTTGAAT+AGG | + | chr8_1:81896779-81896798 | Msa1219110:intron | 45.0% | |
| ! | AGTGTTAGTGTCGGACACTT+AGG | + | chr8_1:81897003-81897022 | Msa1219110:intron | 45.0% |
| ! | ACACCGACAATCTGAAGTGT+CGG | + | chr8_1:81897027-81897046 | Msa1219110:intron | 45.0% |
| GAGGTTGCAAAGAGAACCTT+TGG | - | chr8_1:81897251-81897270 | None:intergenic | 45.0% | |
| ! | TGGAGATTTCTTTGGTGGTC+TGG | + | chr8_1:81897680-81897699 | Msa1219110:CDS | 45.0% |
| AAAAATTTGAGGGCTGCTGG+AGG | + | chr8_1:81898223-81898242 | Msa1219110:CDS | 45.0% | |
| AAAATTTGAGGGCTGCTGGA+GGG | + | chr8_1:81898224-81898243 | Msa1219110:CDS | 45.0% | |
| GCAGAAACTTCCAGAATCAG+AGG | + | chr8_1:81898462-81898481 | Msa1219110:CDS | 45.0% | |
| GAAACTTCCAGAATCAGAGG+AGG | + | chr8_1:81898465-81898484 | Msa1219110:CDS | 45.0% | |
| CTCATATCCTCCTCTGATTC+TGG | - | chr8_1:81898475-81898494 | None:intergenic | 45.0% | |
| CAGAATCAGAGGAGGATATG+AGG | + | chr8_1:81898473-81898492 | Msa1219110:CDS | 45.0% | |
| !! | TTTCAAAATAATAATAATAA+TGG | - | chr8_1:81895605-81895624 | None:intergenic | 5.0% |
| CTGCTAGTGAAAGGTGGGAT+TGG | - | chr8_1:81895659-81895678 | None:intergenic | 50.0% | |
| CAATCCCACCTTTCACTAGC+AGG | + | chr8_1:81895657-81895676 | Msa1219110:intron | 50.0% | |
| GATCCCTGCTAGTGAAAGGT+GGG | - | chr8_1:81895664-81895683 | None:intergenic | 50.0% | |
| TGATCCCTGCTAGTGAAAGG+TGG | - | chr8_1:81895665-81895684 | None:intergenic | 50.0% | |
| ATGTATGGACCGACCCAACA+CGG | + | chr8_1:81895694-81895713 | Msa1219110:intron | 50.0% | |
| GACCCAACACGGGAATTGTT+AGG | + | chr8_1:81895705-81895724 | Msa1219110:intron | 50.0% | |
| CAGCCTAACAATTCCCGTGT+TGG | - | chr8_1:81895711-81895730 | None:intergenic | 50.0% | |
| GCAGCTGATGCAGTCTCAAT+TGG | + | chr8_1:81896091-81896110 | Msa1219110:intron | 50.0% | |
| TGAAGGAGCAAGTGCAAGCA+TGG | + | chr8_1:81896717-81896736 | Msa1219110:CDS | 50.0% | |
| GGTGGCTTATCAACCCAAGA+AGG | - | chr8_1:81896752-81896771 | None:intergenic | 50.0% | |
| ATCCTCACCTCTACTACTGG+TGG | - | chr8_1:81896770-81896789 | None:intergenic | 50.0% | |
| CTGATCCTCACCTCTACTAC+TGG | - | chr8_1:81896773-81896792 | None:intergenic | 50.0% | |
| AGTGCTTCCTAGACAGGAAC+AGG | - | chr8_1:81896899-81896918 | None:intergenic | 50.0% | |
| !! | AGGAAGCACTGCCACATACA+AGG | + | chr8_1:81896909-81896928 | Msa1219110:intron | 50.0% |
| !!! | CTGCGTGTCTGTGTCGTTTT+AGG | - | chr8_1:81896936-81896955 | None:intergenic | 50.0% |
| CTAAAACGACACAGACACGC+AGG | + | chr8_1:81896934-81896953 | Msa1219110:intron | 50.0% | |
| ! | GCACCGACACTTCAGATTGT+CGG | - | chr8_1:81897033-81897052 | None:intergenic | 50.0% |
| !! | CTGAAGTGTCGGTGCTTCAT+AGG | + | chr8_1:81897038-81897057 | Msa1219110:intron | 50.0% |
| TGATGAGGGTCATAGGCAAG+TGG | + | chr8_1:81897634-81897653 | Msa1219110:CDS | 50.0% | |
| CCAAGGGACGATGTTGTGAT+TGG | - | chr8_1:81898026-81898045 | None:intergenic | 50.0% | |
| CCAATCACAACATCGTCCCT+TGG | + | chr8_1:81898023-81898042 | Msa1219110:intron | 50.0% | |
| ACCATGATATGGGAGGTGGA+GGG | - | chr8_1:81898389-81898408 | None:intergenic | 50.0% | |
| TACCATGATATGGGAGGTGG+AGG | - | chr8_1:81898390-81898409 | None:intergenic | 50.0% | |
| TGGCTCAATGCATTCCAGTG+TGG | + | chr8_1:81898753-81898772 | Msa1219110:three_prime_UTR | 50.0% | |
| GGTATCCGGCCTGACTAATC+CGG | + | chr8_1:81895629-81895648 | Msa1219110:intron | 55.0% | |
| GTATCCGGCCTGACTAATCC+GGG | + | chr8_1:81895630-81895649 | Msa1219110:intron | 55.0% | |
| TATCCGGCCTGACTAATCCG+GGG | + | chr8_1:81895631-81895650 | Msa1219110:intron | 55.0% | |
| !! | ATTGGTCCCCCGGATTAGTC+AGG | - | chr8_1:81895641-81895660 | None:intergenic | 55.0% |
| TGTATGGACCGACCCAACAC+GGG | + | chr8_1:81895695-81895714 | Msa1219110:intron | 55.0% | |
| ! | TGGGTCTGGAATCACGGTTG+AGG | - | chr8_1:81895996-81896015 | None:intergenic | 55.0% |
| AGCCACCAGTAGTAGAGGTG+AGG | + | chr8_1:81896765-81896784 | Msa1219110:intron | 55.0% | |
| TGTGGCAGTGCTTCCTAGAC+AGG | - | chr8_1:81896905-81896924 | None:intergenic | 55.0% | |
| TGGCAGGTGACTGTTCCCAA+AGG | + | chr8_1:81897232-81897251 | Msa1219110:intron | 55.0% | |
| TATGGGAGGTGGAGGGACAA+TGG | - | chr8_1:81898382-81898401 | None:intergenic | 55.0% | |
| TCCCTCCACCTCCCATATCA+TGG | + | chr8_1:81898385-81898404 | Msa1219110:CDS | 55.0% | |
| ATCCGGCCTGACTAATCCGG+GGG | + | chr8_1:81895632-81895651 | Msa1219110:intron | 60.0% | |
| !! | GAAAGGTGGGATTGGTCCCC+CGG | - | chr8_1:81895651-81895670 | None:intergenic | 60.0% |
| ACGACACAGACACGCAGGCA+TGG | + | chr8_1:81896939-81896958 | Msa1219110:intron | 60.0% | |
| CGACACAGACACGCAGGCAT+GGG | + | chr8_1:81896940-81896959 | Msa1219110:intron | 60.0% | |
| !! | GTCCCCCGGATTAGTCAGGC+CGG | - | chr8_1:81895637-81895656 | None:intergenic | 65.0% |
| GGAGGTGGAGGGACAATGGC+TGG | - | chr8_1:81898378-81898397 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 81895248 | 81898843 | 81895248 | ID=Msa1219110;Name=Msa1219110 |
| chr8_1 | mRNA | 81895248 | 81898843 | 81895248 | ID=Msa1219110-mRNA-1;Parent=Msa1219110;Name=Msa1219110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=134|1|1|1|0.8|0.83|6|208|337 |
| chr8_1 | exon | 81895248 | 81895375 | 81895248 | ID=Msa1219110-mRNA-1:exon:29030;Parent=Msa1219110-mRNA-1 |
| chr8_1 | exon | 81896400 | 81896543 | 81896400 | ID=Msa1219110-mRNA-1:exon:29031;Parent=Msa1219110-mRNA-1 |
| chr8_1 | exon | 81896620 | 81896781 | 81896620 | ID=Msa1219110-mRNA-1:exon:29032;Parent=Msa1219110-mRNA-1 |
| chr8_1 | exon | 81897238 | 81897360 | 81897238 | ID=Msa1219110-mRNA-1:exon:29033;Parent=Msa1219110-mRNA-1 |
| chr8_1 | exon | 81897608 | 81897751 | 81897608 | ID=Msa1219110-mRNA-1:exon:29034;Parent=Msa1219110-mRNA-1 |
| chr8_1 | exon | 81898189 | 81898843 | 81898189 | ID=Msa1219110-mRNA-1:exon:29035;Parent=Msa1219110-mRNA-1 |
| chr8_1 | five_prime_UTR | 81895248 | 81895375 | 81895248 | ID=Msa1219110-mRNA-1:five_prime_utr;Parent=Msa1219110-mRNA-1 |
| chr8_1 | five_prime_UTR | 81896400 | 81896405 | 81896400 | ID=Msa1219110-mRNA-1:five_prime_utr;Parent=Msa1219110-mRNA-1 |
| chr8_1 | CDS | 81896406 | 81896543 | 81896406 | ID=Msa1219110-mRNA-1:cds;Parent=Msa1219110-mRNA-1 |
| chr8_1 | CDS | 81896620 | 81896781 | 81896620 | ID=Msa1219110-mRNA-1:cds;Parent=Msa1219110-mRNA-1 |
| chr8_1 | CDS | 81897238 | 81897360 | 81897238 | ID=Msa1219110-mRNA-1:cds;Parent=Msa1219110-mRNA-1 |
| chr8_1 | CDS | 81897608 | 81897751 | 81897608 | ID=Msa1219110-mRNA-1:cds;Parent=Msa1219110-mRNA-1 |
| chr8_1 | CDS | 81898189 | 81898635 | 81898189 | ID=Msa1219110-mRNA-1:cds;Parent=Msa1219110-mRNA-1 |
| chr8_1 | three_prime_UTR | 81898636 | 81898843 | 81898636 | ID=Msa1219110-mRNA-1:three_prime_utr;Parent=Msa1219110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
