AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222610 MtrunA17_Chr4g0073661 99.429 175 1 0 1 175 1 175 2.61e-130 362
Msa1222610 MtrunA17_Chr2g0333301 70.286 175 52 0 1 175 1 175 1.35e-91 264
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222610 AT3G18430.1 69.714 175 53 0 1 175 1 175 1.64e-92 267
Msa1222610 AT3G18430.3 69.714 175 53 0 1 175 1 175 1.64e-92 267
Msa1222610 AT3G18430.2 69.714 175 53 0 1 175 1 175 1.64e-92 267

Find 77 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAACTGCCAACTGTTTC+TGG 0.003447 8_1:-86862805 None:intergenic
ATCAATCAATACCTTCATTT+TGG 0.187469 8_1:-86862776 None:intergenic
ATGAGGGAGTTTCTTGATTC+TGG 0.207485 8_1:+86866661 Msa1222610:three_prime_UTR
CCAGAAACAGTTGGCAGTTT+GGG 0.243614 8_1:+86862805 Msa1222610:five_prime_UTR
GAGAGGATTGACGGCGAATT+CGG 0.282242 8_1:-86863183 None:intergenic
CTCTCTGAGTCTGAGGGGTT+TGG 0.284352 8_1:+86862853 Msa1222610:five_prime_UTR
CCAAACTGCCAACTGTTTCT+GGG 0.320093 8_1:-86862804 None:intergenic
CCCAGAAACAGTTGGCAGTT+TGG 0.320709 8_1:+86862804 Msa1222610:five_prime_UTR
CTCTCTGTCATGCCTTACTT+TGG 0.321336 8_1:+86866633 Msa1222610:three_prime_UTR
CTGTTAGATTCTTGGCAATT+CGG 0.336457 8_1:+86866535 Msa1222610:intron
AGAGGATTGACGGCGAATTC+GGG 0.339160 8_1:-86863182 None:intergenic
TCTCTGTCATGCCTTACTTT+GGG 0.358275 8_1:+86866634 Msa1222610:three_prime_UTR
TTTGTACATACAGGAAGTTC+TGG 0.363741 8_1:+86864838 Msa1222610:intron
CAACTGTGGTTTCATTCCTT+CGG 0.404084 8_1:+86863142 Msa1222610:CDS
GAAGATGGAAGCCGAGGTTC+CGG 0.410334 8_1:+86866562 Msa1222610:CDS
GCTAGATGGCTTTAACTTCA+AGG 0.416601 8_1:+86863310 Msa1222610:CDS
CGCCGTCAATCCTCTCTCTC+AGG 0.441146 8_1:+86863190 Msa1222610:CDS
TGACAGAGAGGTTTCTTTGA+GGG 0.446930 8_1:-86866620 None:intergenic
CATTACATCTGAGGAGGAAA+AGG 0.447830 8_1:-86866938 None:intergenic
GCATTGTAATCTTCCTAGAC+AGG 0.453549 8_1:+86862729 None:intergenic
TCAAAGTCAATGAGCCCATT+GGG 0.457045 8_1:+86862753 Msa1222610:five_prime_UTR
CCTTACTTTGGGTTTGATGA+GGG 0.461597 8_1:+86866645 Msa1222610:three_prime_UTR
TGTGGAGCCTCGAGCCTTGT+AGG 0.464094 8_1:+86862886 Msa1222610:five_prime_UTR
AACCAGCTTCTTCAAGAACC+TGG 0.477438 8_1:-86864862 None:intergenic
CATTGACTTTGACCCTGTCT+AGG 0.480472 8_1:-86862742 None:intergenic
GTCAAAGTCAATGAGCCCAT+TGG 0.480963 8_1:+86862752 Msa1222610:five_prime_UTR
GCCTTACTTTGGGTTTGATG+AGG 0.489581 8_1:+86866644 Msa1222610:three_prime_UTR
AGTTTGCTGAGAATGCTAGA+TGG 0.491782 8_1:+86863296 Msa1222610:CDS
GCCCAGGTTCTTGAAGAAGC+TGG 0.498841 8_1:+86864860 Msa1222610:CDS
GGGTTTGGAGTTGAATGTTG+TGG 0.499471 8_1:+86862868 Msa1222610:five_prime_UTR
GACCTGAGAGAGAGGATTGA+CGG 0.500526 8_1:-86863192 None:intergenic
CCCTCATCAAACCCAAAGTA+AGG 0.500705 8_1:-86866645 None:intergenic
TGGCAATTCGGATTTGAAGA+TGG 0.512548 8_1:+86866547 Msa1222610:CDS
AGCCCATTGGGCCAAAATGA+AGG 0.515998 8_1:+86862765 Msa1222610:five_prime_UTR
CATTTGCAAAGGGAAGAAAT+AGG 0.519095 8_1:+86867012 Msa1222610:three_prime_UTR
CACTCACTCACTCACCTACA+AGG 0.521543 8_1:-86862900 None:intergenic
ATTGACGGCGAATTCGGGAA+TGG 0.526501 8_1:-86863177 None:intergenic
TATGTCTGAACATCAAAGAA+AGG 0.529659 8_1:+86863569 Msa1222610:CDS
CTATCCTCATTCTAATCCAC+CGG 0.535553 8_1:-86866581 None:intergenic
AGCTCGGTGGCATTTGCAAA+GGG 0.540739 8_1:+86867002 Msa1222610:three_prime_UTR
ATGACAGAGAGGTTTCTTTG+AGG 0.544805 8_1:-86866621 None:intergenic
GTTTATGATACGGATTGCAA+TGG 0.548032 8_1:+86863492 Msa1222610:CDS
TGAGGAGGAAAAGGAGTAGG+AGG 0.553268 8_1:-86866929 None:intergenic
AGTCTTGTCTGACTTCATGA+AGG 0.561332 8_1:+86864904 Msa1222610:CDS
ATTCTAATCCACCGGAACCT+CGG 0.566807 8_1:-86866573 None:intergenic
GAGCTCGGTGGCATTTGCAA+AGG 0.573914 8_1:+86867001 Msa1222610:three_prime_UTR
GAGGGAGAGACCTGAGAGAG+AGG 0.574191 8_1:-86863200 None:intergenic
TGAAGAAGCTGGTTATACAA+AGG 0.577059 8_1:+86864871 Msa1222610:CDS
ATCTGAGGAGGAAAAGGAGT+AGG 0.582494 8_1:-86866932 None:intergenic
GAAATAGGAAAACATGCTGA+AGG 0.585155 8_1:+86867027 Msa1222610:three_prime_UTR
ATAGAAATAAACATCGCTGA+AGG 0.586713 8_1:-86866764 None:intergenic
ACCAGCTTCTTCAAGAACCT+GGG 0.593590 8_1:-86864861 None:intergenic
CATACAGGAAGTTCTGGCCC+AGG 0.597067 8_1:+86864844 Msa1222610:intron
GATGGAAGCCGAGGTTCCGG+TGG 0.604419 8_1:+86866565 Msa1222610:CDS
ATGGAGAGAAATTCATCCGA+AGG 0.604732 8_1:-86863158 None:intergenic
GGTTTCTTTGAGGGTACTCG+AGG 0.606994 8_1:-86866611 None:intergenic
CATTGTAATCTTCCTAGACA+GGG 0.607353 8_1:+86862730 None:intergenic
CAGAAACAGTTGGCAGTTTG+GGG 0.608920 8_1:+86862806 Msa1222610:five_prime_UTR
TTTACAGTACATTACATCTG+AGG 0.610548 8_1:-86866947 None:intergenic
GTGAGTGAGTGATCGATCGA+TGG 0.613535 8_1:+86862912 Msa1222610:exon
AATGTCGTACTGTGTGAGCA+TGG 0.625820 8_1:-86862947 None:intergenic
ACAGTACATTACATCTGAGG+AGG 0.626144 8_1:-86866944 None:intergenic
GATCGAGTTGACAGAAACGC+TGG 0.627666 8_1:-86863115 None:intergenic
ACGAGCAGATAAAACGAGCT+CGG 0.634511 8_1:+86866986 Msa1222610:three_prime_UTR
GGTTCCGGTGGATTAGAATG+AGG 0.636783 8_1:+86866577 Msa1222610:exon
AATGAAGGTATTGATTGATG+TGG 0.646000 8_1:+86862780 Msa1222610:five_prime_UTR
GGATTTGAAGATGGAAGCCG+AGG 0.649425 8_1:+86866556 Msa1222610:CDS
GTTTCTTTGAGGGTACTCGA+GGG 0.652377 8_1:-86866610 None:intergenic
CAACTCGATCGCAACAACTG+TGG 0.660071 8_1:+86863128 Msa1222610:CDS
AGCAGATAAAACGAGCTCGG+TGG 0.660784 8_1:+86866989 Msa1222610:three_prime_UTR
TCTCTCTCTCTGAGTCTGAG+GGG 0.662779 8_1:+86862848 Msa1222610:five_prime_UTR
CAAAGTAAGGCATGACAGAG+AGG 0.664183 8_1:-86866632 None:intergenic
ATGAAGGTATTGATTGATGT+GGG 0.670887 8_1:+86862781 Msa1222610:five_prime_UTR
TGAGTGAGTGATCGATCGAT+GGG 0.670985 8_1:+86862913 Msa1222610:exon
GATGTGGGCCCAGAAACAGT+TGG 0.675310 8_1:+86862796 Msa1222610:five_prime_UTR
TCACTCACCTACAAGGCTCG+AGG 0.682931 8_1:-86862893 None:intergenic
TTGTGTTGAAGAGTGGCGCG+TGG 0.694317 8_1:-86863362 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAATTACAAAAAAAA+GGG - chr8_1:86864229-86864248 None:intergenic 10.0%
!!! TATTTTCAATTACAAAAAAA+AGG - chr8_1:86864230-86864249 None:intergenic 10.0%
!!! TCTATATATTTTTTTTGAAT+CGG + chr8_1:86865108-86865127 Msa1222610:intron 10.0%
!! GTTAATTATATTCATATAAA+CGG + chr8_1:86866053-86866072 Msa1222610:intron 10.0%
!!! TCAACATTTAATTAATTTTA+GGG - chr8_1:86867072-86867091 None:intergenic 10.0%
!!! TTCAACATTTAATTAATTTT+AGG - chr8_1:86867073-86867092 None:intergenic 10.0%
!! ACAATCAAATAATAACATAA+GGG + chr8_1:86863810-86863829 Msa1222610:intron 15.0%
!! TAATTGAAAATATGTAAATG+AGG + chr8_1:86864238-86864257 Msa1222610:intron 15.0%
!! AAATTGTCAAAATTACAATT+GGG - chr8_1:86864320-86864339 None:intergenic 15.0%
!! AAAATTGTCAAAATTACAAT+TGG - chr8_1:86864321-86864340 None:intergenic 15.0%
!! TAATTGTTTATCATTATAAG+TGG - chr8_1:86864374-86864393 None:intergenic 15.0%
!! AAATATATAGATAAATGTTC+AGG - chr8_1:86865099-86865118 None:intergenic 15.0%
!!! TTTACAATGCTTTTTTTTTT+TGG - chr8_1:86865282-86865301 None:intergenic 15.0%
!! CCATATATAGATAAATATTT+CGG - chr8_1:86865671-86865690 None:intergenic 15.0%
!!! AACATTATTTTGGATTTTTA+TGG - chr8_1:86866016-86866035 None:intergenic 15.0%
!! TATATATGCTAAATCAAATT+AGG - chr8_1:86866311-86866330 None:intergenic 15.0%
!!! TTTTGAACTATAGTAATAAT+CGG + chr8_1:86866885-86866904 Msa1222610:intron 15.0%
!! TTTCAATTCAAAATGCAAAA+TGG + chr8_1:86863250-86863269 Msa1222610:intron 20.0%
!! TTCAATTCAAAATGCAAAAT+GGG + chr8_1:86863251-86863270 Msa1222610:intron 20.0%
!! AAATAACTACAAGAAACAAA+AGG - chr8_1:86863467-86863486 None:intergenic 20.0%
!!! TATTTTCAAGGTTTATGATA+CGG + chr8_1:86863482-86863501 Msa1222610:CDS 20.0%
!! CACAATCAAATAATAACATA+AGG + chr8_1:86863809-86863828 Msa1222610:intron 20.0%
!!! TCAATGAGTATATTTTAAAG+GGG - chr8_1:86863963-86863982 None:intergenic 20.0%
!!! CTCAATGAGTATATTTTAAA+GGG - chr8_1:86863964-86863983 None:intergenic 20.0%
!!! ACTCAATGAGTATATTTTAA+AGG - chr8_1:86863965-86863984 None:intergenic 20.0%
!!! TAACTTGCATTAATGATTTT+AGG - chr8_1:86865073-86865092 None:intergenic 20.0%
!! TAAAATCATTAATGCAAGTT+AGG + chr8_1:86865072-86865091 Msa1222610:intron 20.0%
!! TGGACAAAATAAAATACAAA+TGG + chr8_1:86865170-86865189 Msa1222610:intron 20.0%
!!! AAAAAAAAGCATTGTAAACA+CGG + chr8_1:86865284-86865303 Msa1222610:intron 20.0%
!! ATATAGATAAATATTTCGGT+GGG - chr8_1:86865667-86865686 None:intergenic 20.0%
!! TATATAGATAAATATTTCGG+TGG - chr8_1:86865668-86865687 None:intergenic 20.0%
!! CCGAAATATTTATCTATATA+TGG + chr8_1:86865668-86865687 Msa1222610:intron 20.0%
!!! TGTTTGAATTAAAAGCTTTT+TGG + chr8_1:86866083-86866102 Msa1222610:intron 20.0%
!!! TCTTTATTTGAAACATACAT+AGG + chr8_1:86866284-86866303 Msa1222610:intron 20.0%
!! TATGTTTATCTTAGAAACTT+AGG + chr8_1:86866336-86866355 Msa1222610:intron 20.0%
!!! CATTTTTTTCAAATGAAAGA+TGG - chr8_1:86866497-86866516 None:intergenic 20.0%
!!! AATATGATTGTTTTAGCTAT+TGG + chr8_1:86866808-86866827 Msa1222610:three_prime_UTR 20.0%
!!! ACATTTAATTAATTTTAGGG+TGG - chr8_1:86867069-86867088 None:intergenic 20.0%
!! ATCAATCAATACCTTCATTT+TGG - chr8_1:86862779-86862798 None:intergenic 25.0%
! GTTAAAGGAAATAGAAATGA+AGG - chr8_1:86863046-86863065 None:intergenic 25.0%
! AAAGAAAACGAAGAAGTTAA+AGG - chr8_1:86863061-86863080 None:intergenic 25.0%
! TGCTTGCATAAATTCATAAT+TGG + chr8_1:86863423-86863442 Msa1222610:intron 25.0%
!!! GTTTCTTGTAGTTATTTTCA+AGG + chr8_1:86863470-86863489 Msa1222610:intron 25.0%
!!! TAGTTTTGATGATATGTTGA+CGG + chr8_1:86863521-86863540 Msa1222610:CDS 25.0%
! AGAAAAAACAAATGCATAAC+AGG - chr8_1:86863615-86863634 None:intergenic 25.0%
!!! AATTCCCAAATCAGTTTTAA+AGG - chr8_1:86863733-86863752 None:intergenic 25.0%
! CCTTAAAACATCATATTGTT+GGG - chr8_1:86863785-86863804 None:intergenic 25.0%
!!! CCAACAATATGATGTTTTAA+GGG + chr8_1:86863783-86863802 Msa1222610:intron 25.0%
! TCAAATAATAACATAAGGGT+AGG + chr8_1:86863814-86863833 Msa1222610:intron 25.0%
! TGTGTAATTGAAAATATGTG+AGG + chr8_1:86864029-86864048 Msa1222610:intron 25.0%
! GTGTAATTGAAAATATGTGA+GGG + chr8_1:86864030-86864049 Msa1222610:intron 25.0%
! TGTAATTGAAAATATGTGAG+GGG + chr8_1:86864031-86864050 Msa1222610:intron 25.0%
!! GTTGAGAATGAAGATTTTAT+TGG + chr8_1:86864260-86864279 Msa1222610:intron 25.0%
! TATGAACAATGAATAATCGA+CGG + chr8_1:86864499-86864518 Msa1222610:intron 25.0%
!!! AATAAATGTCATTTTTCCGT+AGG - chr8_1:86864551-86864570 None:intergenic 25.0%
! TCAAATATTTGTAAGGATAG+GGG - chr8_1:86864650-86864669 None:intergenic 25.0%
! CTCAAATATTTGTAAGGATA+GGG - chr8_1:86864651-86864670 None:intergenic 25.0%
! TGCACTAAAATACTTAAGTT+TGG + chr8_1:86864959-86864978 Msa1222610:intron 25.0%
!! TTTTAATATGCAATTGCAAG+TGG + chr8_1:86864988-86865007 Msa1222610:intron 25.0%
!!! TTTTTTTTGGAGTCTGTTTT+AGG - chr8_1:86865269-86865288 None:intergenic 25.0%
!! ATCTTGAGAAGAGTATAATA+TGG + chr8_1:86865842-86865861 Msa1222610:intron 25.0%
! CTTAAATACTGTCTGTTTAA+AGG - chr8_1:86865981-86866000 None:intergenic 25.0%
!!! AGCTTTTAATTCAAACAAGT+TGG - chr8_1:86866080-86866099 None:intergenic 25.0%
!! TTTAACTTATTGGCAGTAAA+GGG - chr8_1:86866252-86866271 None:intergenic 25.0%
! TCAAATAAAGATACTGAAGT+TGG - chr8_1:86866275-86866294 None:intergenic 25.0%
! AATCTAACAGTAAAAAGGAA+CGG - chr8_1:86866525-86866544 None:intergenic 25.0%
! TTGATTGCAAAACAAAAACT+CGG + chr8_1:86866720-86866739 Msa1222610:three_prime_UTR 25.0%
!! AATGAAGGTATTGATTGATG+TGG + chr8_1:86862780-86862799 Msa1222610:five_prime_UTR 30.0%
!! ATGAAGGTATTGATTGATGT+GGG + chr8_1:86862781-86862800 Msa1222610:five_prime_UTR 30.0%
! TTCAATTTTGTGTTGAAGAG+TGG - chr8_1:86863372-86863391 None:intergenic 30.0%
TATGTCTGAACATCAAAGAA+AGG + chr8_1:86863569-86863588 Msa1222610:CDS 30.0%
! TATGCGTTTTGTGTATGAAT+TGG + chr8_1:86863646-86863665 Msa1222610:intron 30.0%
ATTCTCTATGGTAGATAACT+AGG - chr8_1:86863689-86863708 None:intergenic 30.0%
TAGAAATTGAGCATTCTCTA+TGG - chr8_1:86863701-86863720 None:intergenic 30.0%
AGAATGCTCAATTTCTATTC+TGG + chr8_1:86863704-86863723 Msa1222610:intron 30.0%
GAATGCTCAATTTCTATTCT+GGG + chr8_1:86863705-86863724 Msa1222610:intron 30.0%
!! GGTTCCTTTAAAACTGATTT+GGG + chr8_1:86863726-86863745 Msa1222610:intron 30.0%
! CCCAACAATATGATGTTTTA+AGG + chr8_1:86863782-86863801 Msa1222610:intron 30.0%
CCCTTAAAACATCATATTGT+TGG - chr8_1:86863786-86863805 None:intergenic 30.0%
!! GTATATTTTAAAGGGGTGAA+GGG - chr8_1:86863956-86863975 None:intergenic 30.0%
!! AGTATATTTTAAAGGGGTGA+AGG - chr8_1:86863957-86863976 None:intergenic 30.0%
TTGTGTCTGTTGAAAATATG+AGG + chr8_1:86863989-86864008 Msa1222610:intron 30.0%
TGTGTCTGTTGAAAATATGA+GGG + chr8_1:86863990-86864009 Msa1222610:intron 30.0%
TACAATACACCAATAATGGT+GGG + chr8_1:86864155-86864174 Msa1222610:intron 30.0%
! GAGAATGAAGATTTTATTGG+AGG + chr8_1:86864263-86864282 Msa1222610:intron 30.0%
! TATTGACAGATTTTGTCTGT+AGG + chr8_1:86864567-86864586 Msa1222610:intron 30.0%
CCTCAAATATTTGTAAGGAT+AGG - chr8_1:86864652-86864671 None:intergenic 30.0%
CCTATCCTTACAAATATTTG+AGG + chr8_1:86864649-86864668 Msa1222610:intron 30.0%
! GTATTCTGTTTTGTACATAC+AGG + chr8_1:86864829-86864848 Msa1222610:intron 30.0%
TGAGAAAAACCAAAAAGACT+TGG - chr8_1:86865032-86865051 None:intergenic 30.0%
!!! GTTTGGGAGTTTTATTTTGA+GGG - chr8_1:86865352-86865371 None:intergenic 30.0%
!!! TTTGACTCAAGTTGGTTTTT+GGG - chr8_1:86865481-86865500 None:intergenic 30.0%
ACTATAGTACCAAATTAGCA+GGG + chr8_1:86865544-86865563 Msa1222610:intron 30.0%
! AATCTTTGTTCGACTTGATT+TGG - chr8_1:86865601-86865620 None:intergenic 30.0%
! TTGATTTGAGAAAAAATGCC+AGG - chr8_1:86865772-86865791 None:intergenic 30.0%
!!! TGGCATTTTTTCTCAAATCA+AGG + chr8_1:86865771-86865790 Msa1222610:intron 30.0%
ATTATACTCTTCTCAAGATC+AGG - chr8_1:86865841-86865860 None:intergenic 30.0%
! TTAACCCTTATTTAGTAGCT+AGG + chr8_1:86866155-86866174 Msa1222610:intron 30.0%
! GTTTAACTTATTGGCAGTAA+AGG - chr8_1:86866253-86866272 None:intergenic 30.0%
! CTGAAGTTGGTTTAACTTAT+TGG - chr8_1:86866262-86866281 None:intergenic 30.0%
CCAAGAATCTAACAGTAAAA+AGG - chr8_1:86866530-86866549 None:intergenic 30.0%
! CCTTTTTACTGTTAGATTCT+TGG + chr8_1:86866527-86866546 Msa1222610:intron 30.0%
TGATTGCAAAACAAAAACTC+GGG + chr8_1:86866721-86866740 Msa1222610:three_prime_UTR 30.0%
ATAGAAATAAACATCGCTGA+AGG - chr8_1:86866767-86866786 None:intergenic 30.0%
GAACTATAGTAATAATCGGA+AGG + chr8_1:86866889-86866908 Msa1222610:intron 30.0%
TTTACAGTACATTACATCTG+AGG - chr8_1:86866950-86866969 None:intergenic 30.0%
! GTTTATGATACGGATTGCAA+TGG + chr8_1:86863492-86863511 Msa1222610:CDS 35.0%
! ATGATATGTTGACGGTTTTG+AGG + chr8_1:86863529-86863548 Msa1222610:CDS 35.0%
!! TGATATGTTGACGGTTTTGA+GGG + chr8_1:86863530-86863549 Msa1222610:CDS 35.0%
ACACAAAACGCATAAAGCAT+AGG - chr8_1:86863640-86863659 None:intergenic 35.0%
TCTATGGTAGATAACTAGGA+AGG - chr8_1:86863685-86863704 None:intergenic 35.0%
!! GGGTTCCTTTAAAACTGATT+TGG + chr8_1:86863725-86863744 Msa1222610:intron 35.0%
!! GATTTGGGAATTTGATTTGC+TGG + chr8_1:86863741-86863760 Msa1222610:intron 35.0%
CCAATTTATGGAGTTATTCC+CGG + chr8_1:86863847-86863866 Msa1222610:intron 35.0%
AAAAGACAGTATGTAACCTC+AGG + chr8_1:86863889-86863908 Msa1222610:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG + chr8_1:86864072-86864091 Msa1222610:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG + chr8_1:86864122-86864141 Msa1222610:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr8_1:86864127-86864146 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr8_1:86864127-86864146 Msa1222610:intron 35.0%
TGCGTACAATACACCAATAA+TGG + chr8_1:86864151-86864170 Msa1222610:intron 35.0%
GTACAATACACCAATAATGG+TGG + chr8_1:86864154-86864173 Msa1222610:intron 35.0%
TTACAAAAAAAAGGGCAACC+CGG - chr8_1:86864221-86864240 None:intergenic 35.0%
! ATGAAGATTTTATTGGAGGC+AGG + chr8_1:86864267-86864286 Msa1222610:intron 35.0%
! TGAAGATTTTATTGGAGGCA+GGG + chr8_1:86864268-86864287 Msa1222610:intron 35.0%
! TTTTTCCGTAGGTAAAAGTC+CGG - chr8_1:86864540-86864559 None:intergenic 35.0%
! TATTTGAGGCCTCCATAAAT+TGG + chr8_1:86864663-86864682 Msa1222610:intron 35.0%
AAAACTGATATCCTCCAATC+AGG - chr8_1:86864733-86864752 None:intergenic 35.0%
TTCAATCGCACAAGATAATG+AGG + chr8_1:86864774-86864793 Msa1222610:intron 35.0%
TCAATCGCACAAGATAATGA+GGG + chr8_1:86864775-86864794 Msa1222610:intron 35.0%
CAAGATAATGAGGGATGATT+TGG + chr8_1:86864784-86864803 Msa1222610:intron 35.0%
TTTGTACATACAGGAAGTTC+TGG + chr8_1:86864838-86864857 Msa1222610:intron 35.0%
TGAAGAAGCTGGTTATACAA+AGG + chr8_1:86864871-86864890 Msa1222610:CDS 35.0%
AATATGCAATTGCAAGTGGT+AGG + chr8_1:86864992-86865011 Msa1222610:intron 35.0%
! GATTATGCACCAAGTCTTTT+TGG + chr8_1:86865020-86865039 Msa1222610:intron 35.0%
!!! TTATCTTCAGGGGTGTTTTT+AGG - chr8_1:86865225-86865244 None:intergenic 35.0%
!!! TTTTGGTGGGTTTATCTTCA+GGG - chr8_1:86865236-86865255 None:intergenic 35.0%
!! TTTTAGGTGGTGATGTGTTT+TGG - chr8_1:86865253-86865272 None:intergenic 35.0%
!!! TTTTTGGAGTCTGTTTTAGG+TGG - chr8_1:86865266-86865285 None:intergenic 35.0%
!!! GGTTTGGGAGTTTTATTTTG+AGG - chr8_1:86865353-86865372 None:intergenic 35.0%
!!! CTTTGACTCAAGTTGGTTTT+TGG - chr8_1:86865482-86865501 None:intergenic 35.0%
!! ATCACTTTTGATTCGAGATC+GGG - chr8_1:86865513-86865532 None:intergenic 35.0%
!! GATCACTTTTGATTCGAGAT+CGG - chr8_1:86865514-86865533 None:intergenic 35.0%
GATCTCGAATCAAAAGTGAT+CGG + chr8_1:86865513-86865532 Msa1222610:intron 35.0%
ATTTGGTACTATAGTCTGGT+GGG - chr8_1:86865539-86865558 None:intergenic 35.0%
AATTTGGTACTATAGTCTGG+TGG - chr8_1:86865540-86865559 None:intergenic 35.0%
GCTAATTTGGTACTATAGTC+TGG - chr8_1:86865543-86865562 None:intergenic 35.0%
GACTATAGTACCAAATTAGC+AGG + chr8_1:86865543-86865562 Msa1222610:intron 35.0%
!!! GACTTGATTTGGTTTTTCTC+TGG - chr8_1:86865590-86865609 None:intergenic 35.0%
TGGTTTCACACATAATAGCT+TGG + chr8_1:86865688-86865707 Msa1222610:intron 35.0%
TCAGTTAAACTAAACTGACC+TGG + chr8_1:86865751-86865770 Msa1222610:intron 35.0%
TAAATTGAGCTTATAGCTCC+AGG + chr8_1:86865929-86865948 Msa1222610:intron 35.0%
! CAGGCCTAAGATTTTATGTA+GGG + chr8_1:86865948-86865967 Msa1222610:intron 35.0%
! AGGCCTAAGATTTTATGTAG+GGG + chr8_1:86865949-86865968 Msa1222610:intron 35.0%
TGACCCCTACATAAAATCTT+AGG - chr8_1:86865955-86865974 None:intergenic 35.0%
AATGTATTAGGCATTAGGCA+GGG - chr8_1:86866181-86866200 None:intergenic 35.0%
AAATGTATTAGGCATTAGGC+AGG - chr8_1:86866182-86866201 None:intergenic 35.0%
CCTGAAATGTATTAGGCATT+AGG - chr8_1:86866186-86866205 None:intergenic 35.0%
CCTAATGCCTAATACATTTC+AGG + chr8_1:86866183-86866202 Msa1222610:intron 35.0%
CCTATGACCTGAAATGTATT+AGG - chr8_1:86866193-86866212 None:intergenic 35.0%
! CCTAATACATTTCAGGTCAT+AGG + chr8_1:86866190-86866209 Msa1222610:intron 35.0%
!! CCATGCTCATGATTGTTTTA+GGG + chr8_1:86866389-86866408 Msa1222610:intron 35.0%
CTGTTAGATTCTTGGCAATT+CGG + chr8_1:86866535-86866554 Msa1222610:intron 35.0%
!!! GATTGTTTTAGCTATTGGTG+TGG + chr8_1:86866813-86866832 Msa1222610:three_prime_UTR 35.0%
CATTTGCAAAGGGAAGAAAT+AGG + chr8_1:86867012-86867031 Msa1222610:three_prime_UTR 35.0%
GAAATAGGAAAACATGCTGA+AGG + chr8_1:86867027-86867046 Msa1222610:three_prime_UTR 35.0%
TCAAAGTCAATGAGCCCATT+GGG + chr8_1:86862753-86862772 Msa1222610:five_prime_UTR 40.0%
!! TACCTTCATTTTGGCCCAAT+GGG - chr8_1:86862770-86862789 None:intergenic 40.0%
!! ATACCTTCATTTTGGCCCAA+TGG - chr8_1:86862771-86862790 None:intergenic 40.0%
CAACTGTGGTTTCATTCCTT+CGG + chr8_1:86863142-86863161 Msa1222610:CDS 40.0%
ATGGAGAGAAATTCATCCGA+AGG - chr8_1:86863161-86863180 None:intergenic 40.0%
!! AGTTTGCTGAGAATGCTAGA+TGG + chr8_1:86863296-86863315 Msa1222610:CDS 40.0%
!! GCTAGATGGCTTTAACTTCA+AGG + chr8_1:86863310-86863329 Msa1222610:CDS 40.0%
AACAAATGCATAACAGGAGC+AGG - chr8_1:86863609-86863628 None:intergenic 40.0%
ACTAGGAAGGAAACAGTGAA+AGG - chr8_1:86863672-86863691 None:intergenic 40.0%
AACATAAGGGTAGGAGAGTA+TGG + chr8_1:86863823-86863842 Msa1222610:intron 40.0%
! ACATAAGGGTAGGAGAGTAT+GGG + chr8_1:86863824-86863843 Msa1222610:intron 40.0%
CCGGGAATAACTCCATAAAT+TGG - chr8_1:86863850-86863869 None:intergenic 40.0%
!!! TTTAGTTTTCCAGCTTCTCC+GGG - chr8_1:86863868-86863887 None:intergenic 40.0%
!!! GTTTAGTTTTCCAGCTTCTC+CGG - chr8_1:86863869-86863888 None:intergenic 40.0%
! AAGCTTTATCTCATCTCCTG+AGG - chr8_1:86863908-86863927 None:intergenic 40.0%
AAATATGTGAGGGGTAACCT+TGG + chr8_1:86864040-86864059 Msa1222610:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG + chr8_1:86864121-86864140 Msa1222610:intron 40.0%
AATTGGGCCTCTAAATTGTC+GGG - chr8_1:86864304-86864323 None:intergenic 40.0%
CAATTGGGCCTCTAAATTGT+CGG - chr8_1:86864305-86864324 None:intergenic 40.0%
! GGATAGGGGTATAATTGTTG+CGG - chr8_1:86864636-86864655 None:intergenic 40.0%
GGAGGCCTCAAATATTTGTA+AGG - chr8_1:86864657-86864676 None:intergenic 40.0%
! AGTCTTGTCTGACTTCATGA+AGG + chr8_1:86864904-86864923 Msa1222610:CDS 40.0%
CAATTGCAAGTGGTAGGTTA+GGG + chr8_1:86864998-86865017 Msa1222610:intron 40.0%
CAAATGGTACCGCATATAGA+CGG + chr8_1:86865186-86865205 Msa1222610:intron 40.0%
TATGGTGTACCGTCTATATG+CGG - chr8_1:86865198-86865217 None:intergenic 40.0%
!! TTTGGTGGGTTTATCTTCAG+GGG - chr8_1:86865235-86865254 None:intergenic 40.0%
!!! GTTTTGGTGGGTTTATCTTC+AGG - chr8_1:86865237-86865256 None:intergenic 40.0%
!!! ATTTTGAGGGCGTTCTTTGT+GGG - chr8_1:86865339-86865358 None:intergenic 40.0%
!!! TATTTTGAGGGCGTTCTTTG+TGG - chr8_1:86865340-86865359 None:intergenic 40.0%
TTCGAAATGTGGCTCAGTTT+GGG - chr8_1:86865382-86865401 None:intergenic 40.0%
GTGATAGCTACATGATCCTT+CGG - chr8_1:86865415-86865434 None:intergenic 40.0%
TTTGTGTTGTACTCTTTCGG+TGG - chr8_1:86865457-86865476 None:intergenic 40.0%
! GGCTTTGTGTTGTACTCTTT+CGG - chr8_1:86865460-86865479 None:intergenic 40.0%
GTCAGTTCTTTGACTCAAGT+TGG - chr8_1:86865489-86865508 None:intergenic 40.0%
!! TTGGTTTTTCTCTGGTGTAC+CGG - chr8_1:86865582-86865601 None:intergenic 40.0%
AGATAAATATTTCGGTGGGC+CGG - chr8_1:86865663-86865682 None:intergenic 40.0%
CATAATAGCTTGGAGTGACA+AGG + chr8_1:86865698-86865717 Msa1222610:intron 40.0%
TGAACAATTTCCATGCTCCA+TGG - chr8_1:86865734-86865753 None:intergenic 40.0%
CCTACATAAAATCTTAGGCC+TGG - chr8_1:86865950-86865969 None:intergenic 40.0%
! CCAGGCCTAAGATTTTATGT+AGG + chr8_1:86865947-86865966 Msa1222610:intron 40.0%
AGGGCCTAGCTACTAAATAA+GGG - chr8_1:86866162-86866181 None:intergenic 40.0%
AACTTATTGGCAGTAAAGGG+CGG - chr8_1:86866249-86866268 None:intergenic 40.0%
AACTTAGGTCCTACTGTTTG+AGG + chr8_1:86866351-86866370 Msa1222610:intron 40.0%
ACTTAGGTCCTACTGTTTGA+GGG + chr8_1:86866352-86866371 Msa1222610:intron 40.0%
TTGTATCACCCTCAAACAGT+AGG - chr8_1:86866363-86866382 None:intergenic 40.0%
! GCCATGCTCATGATTGTTTT+AGG + chr8_1:86866388-86866407 Msa1222610:intron 40.0%
CCCTAAAACAATCATGAGCA+TGG - chr8_1:86866392-86866411 None:intergenic 40.0%
TGGCAATTCGGATTTGAAGA+TGG + chr8_1:86866547-86866566 Msa1222610:CDS 40.0%
CTATCCTCATTCTAATCCAC+CGG - chr8_1:86866584-86866603 None:intergenic 40.0%
TGACAGAGAGGTTTCTTTGA+GGG - chr8_1:86866623-86866642 None:intergenic 40.0%
ATGACAGAGAGGTTTCTTTG+AGG - chr8_1:86866624-86866643 None:intergenic 40.0%
TCTCTGTCATGCCTTACTTT+GGG + chr8_1:86866634-86866653 Msa1222610:three_prime_UTR 40.0%
! CCTTACTTTGGGTTTGATGA+GGG + chr8_1:86866645-86866664 Msa1222610:three_prime_UTR 40.0%
ATGAGGGAGTTTCTTGATTC+TGG + chr8_1:86866661-86866680 Msa1222610:three_prime_UTR 40.0%
CATTACATCTGAGGAGGAAA+AGG - chr8_1:86866941-86866960 None:intergenic 40.0%
ACAGTACATTACATCTGAGG+AGG - chr8_1:86866947-86866966 None:intergenic 40.0%
!! CATTGACTTTGACCCTGTCT+AGG - chr8_1:86862745-86862764 None:intergenic 45.0%
GTCAAAGTCAATGAGCCCAT+TGG + chr8_1:86862752-86862771 Msa1222610:five_prime_UTR 45.0%
! CCAAACTGCCAACTGTTTCT+GGG - chr8_1:86862807-86862826 None:intergenic 45.0%
CCAGAAACAGTTGGCAGTTT+GGG + chr8_1:86862805-86862824 Msa1222610:five_prime_UTR 45.0%
CAGAAACAGTTGGCAGTTTG+GGG + chr8_1:86862806-86862825 Msa1222610:five_prime_UTR 45.0%
! GGGTTTGGAGTTGAATGTTG+TGG + chr8_1:86862868-86862887 Msa1222610:five_prime_UTR 45.0%
TGAGTGAGTGATCGATCGAT+GGG + chr8_1:86862913-86862932 Msa1222610:exon 45.0%
AATGTCGTACTGTGTGAGCA+TGG - chr8_1:86862950-86862969 None:intergenic 45.0%
TCGATTTATAGCAGCTTGCG+AGG - chr8_1:86863230-86863249 None:intergenic 45.0%
!!! ACGGTTTTGAGGGATTTGAC+TGG + chr8_1:86863540-86863559 Msa1222610:CDS 45.0%
AACAGGAGCAGGAGAAAGAT+TGG - chr8_1:86863598-86863617 None:intergenic 45.0%
! GGAGAGTATGGGCCAATTTA+TGG + chr8_1:86863835-86863854 Msa1222610:intron 45.0%
GTTGTTGTCATGTGACTGGA+AGG + chr8_1:86864076-86864095 Msa1222610:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr8_1:86864116-86864135 None:intergenic 45.0%
ATTGGGCCTCTAAATTGTCG+GGG - chr8_1:86864303-86864322 None:intergenic 45.0%
ACGGCAAAACTGTTGTCTTC+CGG + chr8_1:86864518-86864537 Msa1222610:intron 45.0%
! GTCTTCCGGACTTTTACCTA+CGG + chr8_1:86864532-86864551 Msa1222610:intron 45.0%
TTGAGGCCTCCATAAATTGG+AGG + chr8_1:86864666-86864685 Msa1222610:intron 45.0%
ACCAGCTTCTTCAAGAACCT+GGG - chr8_1:86864864-86864883 None:intergenic 45.0%
AACCAGCTTCTTCAAGAACC+TGG - chr8_1:86864865-86864884 None:intergenic 45.0%
GCAATTGCAAGTGGTAGGTT+AGG + chr8_1:86864997-86865016 Msa1222610:intron 45.0%
!!! GGGGTGTTTTTAGGTGGTTA+TGG - chr8_1:86865216-86865235 None:intergenic 45.0%
!!! TCTTCAGGGGTGTTTTTAGG+TGG - chr8_1:86865222-86865241 None:intergenic 45.0%
!!! AGGTGGTGATGTGTTTTGGT+GGG - chr8_1:86865249-86865268 None:intergenic 45.0%
!! TAGGTGGTGATGTGTTTTGG+TGG - chr8_1:86865250-86865269 None:intergenic 45.0%
CTTCGAAATGTGGCTCAGTT+TGG - chr8_1:86865383-86865402 None:intergenic 45.0%
GTTAGGTGCTCTTCGAAATG+TGG - chr8_1:86865393-86865412 None:intergenic 45.0%
AGCTACATGATCCTTCGGTT+AGG - chr8_1:86865410-86865429 None:intergenic 45.0%
GTTGTACTCTTTCGGTGGAT+CGG - chr8_1:86865452-86865471 None:intergenic 45.0%
! TGGTTTTTCTCTGGTGTACC+GGG - chr8_1:86865581-86865600 None:intergenic 45.0%
! GTTCATTTGGCTTCGAGATC+GGG - chr8_1:86865641-86865660 None:intergenic 45.0%
! GGTTCATTTGGCTTCGAGAT+CGG - chr8_1:86865642-86865661 None:intergenic 45.0%
GATCTCGAAGCCAAATGAAC+CGG + chr8_1:86865641-86865660 Msa1222610:intron 45.0%
ATCAAGGCCTAAGATTGTCC+TGG + chr8_1:86865787-86865806 Msa1222610:intron 45.0%
! GATTGGTCCAGGACAATCTT+AGG - chr8_1:86865797-86865816 None:intergenic 45.0%
GGAAATGAGTCTACGCAGAT+TGG - chr8_1:86865814-86865833 None:intergenic 45.0%
CTCTTCTCAAGATCAGGCAA+TGG - chr8_1:86865835-86865854 None:intergenic 45.0%
CAGGGCCTAGCTACTAAATA+AGG - chr8_1:86866163-86866182 None:intergenic 45.0%
ACTTATTGGCAGTAAAGGGC+GGG - chr8_1:86866248-86866267 None:intergenic 45.0%
GTTTGAGGGTGATACAACTG+AGG + chr8_1:86866366-86866385 Msa1222610:intron 45.0%
ATTCTAATCCACCGGAACCT+CGG - chr8_1:86866576-86866595 None:intergenic 45.0%
!! GTTTCTTTGAGGGTACTCGA+GGG - chr8_1:86866613-86866632 None:intergenic 45.0%
CAAAGTAAGGCATGACAGAG+AGG - chr8_1:86866635-86866654 None:intergenic 45.0%
CTCTCTGTCATGCCTTACTT+TGG + chr8_1:86866633-86866652 Msa1222610:three_prime_UTR 45.0%
! GCCTTACTTTGGGTTTGATG+AGG + chr8_1:86866644-86866663 Msa1222610:three_prime_UTR 45.0%
CCCTCATCAAACCCAAAGTA+AGG - chr8_1:86866648-86866667 None:intergenic 45.0%
ATCTGAGGAGGAAAAGGAGT+AGG - chr8_1:86866935-86866954 None:intergenic 45.0%
ACGAGCAGATAAAACGAGCT+CGG + chr8_1:86866986-86867005 Msa1222610:three_prime_UTR 45.0%
!!! TATTTTTATTAACATTATTT+TGG - chr8_1:86866026-86866045 None:intergenic 5.0%
AGCCCATTGGGCCAAAATGA+AGG + chr8_1:86862765-86862784 Msa1222610:five_prime_UTR 50.0%
CCCAGAAACAGTTGGCAGTT+TGG + chr8_1:86862804-86862823 Msa1222610:five_prime_UTR 50.0%
CCCAAACTGCCAACTGTTTC+TGG - chr8_1:86862808-86862827 None:intergenic 50.0%
TCTCTCTCTCTCTGAGTCTG+AGG + chr8_1:86862846-86862865 Msa1222610:five_prime_UTR 50.0%
CTCTCTCTCTCTGAGTCTGA+GGG + chr8_1:86862847-86862866 Msa1222610:five_prime_UTR 50.0%
TCTCTCTCTCTGAGTCTGAG+GGG + chr8_1:86862848-86862867 Msa1222610:five_prime_UTR 50.0%
CACTCACTCACTCACCTACA+AGG - chr8_1:86862903-86862922 None:intergenic 50.0%
GTGAGTGAGTGATCGATCGA+TGG + chr8_1:86862912-86862931 Msa1222610:exon 50.0%
!! GATCGAGTTGACAGAAACGC+TGG - chr8_1:86863118-86863137 None:intergenic 50.0%
CAACTCGATCGCAACAACTG+TGG + chr8_1:86863128-86863147 Msa1222610:CDS 50.0%
ATTGACGGCGAATTCGGGAA+TGG - chr8_1:86863180-86863199 None:intergenic 50.0%
AGAGGATTGACGGCGAATTC+GGG - chr8_1:86863185-86863204 None:intergenic 50.0%
GAGAGGATTGACGGCGAATT+CGG - chr8_1:86863186-86863205 None:intergenic 50.0%
GACCTGAGAGAGAGGATTGA+CGG - chr8_1:86863195-86863214 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr8_1:86864060-86864079 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG + chr8_1:86864082-86864101 Msa1222610:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG + chr8_1:86864083-86864102 Msa1222610:intron 50.0%
ACTAAAGCTCCCGCATATGC+GGG - chr8_1:86864195-86864214 None:intergenic 50.0%
CACTAAAGCTCCCGCATATG+CGG - chr8_1:86864196-86864215 None:intergenic 50.0%
! GATTTTATTGGAGGCAGGGC+CGG + chr8_1:86864272-86864291 Msa1222610:intron 50.0%
! ATTTTATTGGAGGCAGGGCC+GGG + chr8_1:86864273-86864292 Msa1222610:intron 50.0%
GCAAAGAGCAAGGAGCTCTA+TGG - chr8_1:86864699-86864718 None:intergenic 50.0%
!! CTGTTCTAGGGCAAAGAGCA+AGG - chr8_1:86864709-86864728 None:intergenic 50.0%
CTTGCTCTTTGCCCTAGAAC+AGG + chr8_1:86864707-86864726 Msa1222610:intron 50.0%
CTCCAATCAGGCCTGTTCTA+GGG - chr8_1:86864721-86864740 None:intergenic 50.0%
TCCATACCTTGCGTCTTGCA+GGG - chr8_1:86865154-86865173 None:intergenic 50.0%
TGTGGGTGAGTAGTGACGAT+GGG - chr8_1:86865322-86865341 None:intergenic 50.0%
TTGTGGGTGAGTAGTGACGA+TGG - chr8_1:86865323-86865342 None:intergenic 50.0%
!! CAGTTTGGGTGTTGGGGTTT+GGG - chr8_1:86865368-86865387 None:intergenic 50.0%
!! TCAGTTTGGGTGTTGGGGTT+TGG - chr8_1:86865369-86865388 None:intergenic 50.0%
TGTGGCTCAGTTTGGGTGTT+GGG - chr8_1:86865375-86865394 None:intergenic 50.0%
ATGTGGCTCAGTTTGGGTGT+TGG - chr8_1:86865376-86865395 None:intergenic 50.0%
!! TTCGAAGAGCACCTAACCGA+AGG + chr8_1:86865396-86865415 Msa1222610:intron 50.0%
! GTTTTTCTCTGGTGTACCGG+GGG - chr8_1:86865579-86865598 None:intergenic 50.0%
! GGTTTTTCTCTGGTGTACCG+GGG - chr8_1:86865580-86865599 None:intergenic 50.0%
TCAGGTCATAGGTTCGTGAC+AGG + chr8_1:86866201-86866220 Msa1222610:intron 50.0%
GGATTTGAAGATGGAAGCCG+AGG + chr8_1:86866556-86866575 Msa1222610:CDS 50.0%
!! GGTTCCGGTGGATTAGAATG+AGG + chr8_1:86866577-86866596 Msa1222610:exon 50.0%
!! GGTTTCTTTGAGGGTACTCG+AGG - chr8_1:86866614-86866633 None:intergenic 50.0%
TGAGGAGGAAAAGGAGTAGG+AGG - chr8_1:86866932-86866951 None:intergenic 50.0%
AGCAGATAAAACGAGCTCGG+TGG + chr8_1:86866989-86867008 Msa1222610:three_prime_UTR 50.0%
! AGCTCGGTGGCATTTGCAAA+GGG + chr8_1:86867002-86867021 Msa1222610:three_prime_UTR 50.0%
GATGTGGGCCCAGAAACAGT+TGG + chr8_1:86862796-86862815 Msa1222610:five_prime_UTR 55.0%
CTCTCTGAGTCTGAGGGGTT+TGG + chr8_1:86862853-86862872 Msa1222610:five_prime_UTR 55.0%
TCACTCACCTACAAGGCTCG+AGG - chr8_1:86862896-86862915 None:intergenic 55.0%
AGCAGCTTGCGAGGAAGAGA+GGG - chr8_1:86863221-86863240 None:intergenic 55.0%
TAGCAGCTTGCGAGGAAGAG+AGG - chr8_1:86863222-86863241 None:intergenic 55.0%
TTGTGTTGAAGAGTGGCGCG+TGG - chr8_1:86863365-86863384 None:intergenic 55.0%
GGAGTTATTCCCGGAGAAGC+TGG + chr8_1:86863856-86863875 Msa1222610:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr8_1:86864095-86864114 Msa1222610:intron 55.0%
GGAAGGGGTCCCACCATTAT+TGG - chr8_1:86864167-86864186 None:intergenic 55.0%
! ATAATGGTGGGACCCCTTCC+CGG + chr8_1:86864167-86864186 Msa1222610:intron 55.0%
CTAAAGCTCCCGCATATGCG+GGG - chr8_1:86864194-86864213 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr8_1:86864199-86864218 Msa1222610:intron 55.0%
GGCCTCTAAATTGTCGGGGA+CGG - chr8_1:86864299-86864318 None:intergenic 55.0%
GCCTCCATAAATTGGAGGCC+CGG + chr8_1:86864671-86864690 Msa1222610:intron 55.0%
AGCAAGGAGCTCTATGGAGC+CGG - chr8_1:86864693-86864712 None:intergenic 55.0%
TGCCCTAGAACAGGCCTGAT+TGG + chr8_1:86864716-86864735 Msa1222610:intron 55.0%
CCTCCAATCAGGCCTGTTCT+AGG - chr8_1:86864722-86864741 None:intergenic 55.0%
CCTAGAACAGGCCTGATTGG+AGG + chr8_1:86864719-86864738 Msa1222610:intron 55.0%
! CATACAGGAAGTTCTGGCCC+AGG + chr8_1:86864844-86864863 Msa1222610:intron 55.0%
GCCCAGGTTCTTGAAGAAGC+TGG + chr8_1:86864860-86864879 Msa1222610:CDS 55.0%
TCCCTGCAAGACGCAAGGTA+TGG + chr8_1:86865150-86865169 Msa1222610:intron 55.0%
GTCCATACCTTGCGTCTTGC+AGG - chr8_1:86865155-86865174 None:intergenic 55.0%
! GTGGCTCAGTTTGGGTGTTG+GGG - chr8_1:86865374-86865393 None:intergenic 55.0%
GTACTCTTTCGGTGGATCGG+AGG - chr8_1:86865449-86865468 None:intergenic 55.0%
!! TGAGGGGTGCCCTGCTAATT+TGG - chr8_1:86865556-86865575 None:intergenic 55.0%
TTGGCTTCGAGATCGGGAGT+CGG - chr8_1:86865635-86865654 None:intergenic 55.0%
! TTTCGGTGGGCCGGTTCATT+TGG - chr8_1:86865654-86865673 None:intergenic 55.0%
! GACAAGGTCACTGACTGCCA+TGG + chr8_1:86865714-86865733 Msa1222610:intron 55.0%
! TCACTGACTGCCATGGAGCA+TGG + chr8_1:86865721-86865740 Msa1222610:intron 55.0%
! GAGTCTACGCAGATTGGTCC+AGG - chr8_1:86865808-86865827 None:intergenic 55.0%
GAAGATGGAAGCCGAGGTTC+CGG + chr8_1:86866562-86866581 Msa1222610:CDS 55.0%
! GAGCTCGGTGGCATTTGCAA+AGG + chr8_1:86867001-86867020 Msa1222610:three_prime_UTR 55.0%
! TGTGGAGCCTCGAGCCTTGT+AGG + chr8_1:86862886-86862905 Msa1222610:five_prime_UTR 60.0%
CGCCGTCAATCCTCTCTCTC+AGG + chr8_1:86863190-86863209 Msa1222610:CDS 60.0%
GAGGGAGAGACCTGAGAGAG+AGG - chr8_1:86863203-86863222 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr8_1:86864049-86864068 Msa1222610:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr8_1:86864200-86864219 Msa1222610:intron 60.0%
CTAAATTGTCGGGGACGGCC+CGG - chr8_1:86864294-86864313 None:intergenic 60.0%
GGCCGTCCCCGACAATTTAG+AGG + chr8_1:86864294-86864313 Msa1222610:intron 60.0%
GCCGGGCCTCCAATTTATGG+AGG - chr8_1:86864675-86864694 None:intergenic 60.0%
GGAGCCGGGCCTCCAATTTA+TGG - chr8_1:86864678-86864697 None:intergenic 60.0%
GCAAGGAGCTCTATGGAGCC+GGG - chr8_1:86864692-86864711 None:intergenic 60.0%
CGTCATCCCTGCAAGACGCA+AGG + chr8_1:86865145-86865164 Msa1222610:intron 60.0%
TGAGTAGTGACGATGGGCGG+GGG - chr8_1:86865316-86865335 None:intergenic 60.0%
GTGAGTAGTGACGATGGGCG+GGG - chr8_1:86865317-86865336 None:intergenic 60.0%
GGTGAGTAGTGACGATGGGC+GGG - chr8_1:86865318-86865337 None:intergenic 60.0%
GGGTGAGTAGTGACGATGGG+CGG - chr8_1:86865319-86865338 None:intergenic 60.0%
TGGCTTCGAGATCGGGAGTC+GGG - chr8_1:86865634-86865653 None:intergenic 60.0%
CATATGCGGGGTCCGGGAAG+GGG - chr8_1:86864182-86864201 None:intergenic 65.0%
GCATATGCGGGGTCCGGGAA+GGG - chr8_1:86864183-86864202 None:intergenic 65.0%
CTTCCCGGACCCCGCATATG+CGG + chr8_1:86864182-86864201 Msa1222610:intron 65.0%
TTCCCGGACCCCGCATATGC+GGG + chr8_1:86864183-86864202 Msa1222610:intron 65.0%
TGGATCGGAGGTCGCGAGGT+TGG - chr8_1:86865437-86865456 None:intergenic 65.0%
TCTGGTGTACCGGGGGTGAG+GGG - chr8_1:86865572-86865591 None:intergenic 65.0%
CTCTGGTGTACCGGGGGTGA+GGG - chr8_1:86865573-86865592 None:intergenic 65.0%
TCTCTGGTGTACCGGGGGTG+AGG - chr8_1:86865574-86865593 None:intergenic 65.0%
GGCTTCGAGATCGGGAGTCG+GGG - chr8_1:86865633-86865652 None:intergenic 65.0%
GATGGAAGCCGAGGTTCCGG+TGG + chr8_1:86866565-86866584 Msa1222610:CDS 65.0%
CGCATATGCGGGGTCCGGGA+AGG - chr8_1:86864184-86864203 None:intergenic 70.0%
CTCCCGCATATGCGGGGTCC+GGG - chr8_1:86864188-86864207 None:intergenic 70.0%
GCTCCCGCATATGCGGGGTC+CGG - chr8_1:86864189-86864208 None:intergenic 70.0%
GTAGTGACGATGGGCGGGGG+TGG - chr8_1:86865313-86865332 None:intergenic 70.0%
TCGGTGGATCGGAGGTCGCG+AGG - chr8_1:86865441-86865460 None:intergenic 70.0%
! AGCAGGGCACCCCTCACCCC+CGG + chr8_1:86865560-86865579 Msa1222610:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 86862738 86867137 86862738 ID=Msa1222610;Name=Msa1222610
chr8_1 mRNA 86862738 86867137 86862738 ID=Msa1222610-mRNA-1;Parent=Msa1222610;Name=Msa1222610-mRNA-1;_AED=0.14;_eAED=0.14;_QI=193|1|1|1|0.83|0.71|7|493|175
chr8_1 exon 86862738 86863000 86862738 ID=Msa1222610-mRNA-1:exon:31283;Parent=Msa1222610-mRNA-1
chr8_1 exon 86863087 86863211 86863087 ID=Msa1222610-mRNA-1:exon:31284;Parent=Msa1222610-mRNA-1
chr8_1 exon 86863296 86863392 86863296 ID=Msa1222610-mRNA-1:exon:31285;Parent=Msa1222610-mRNA-1
chr8_1 exon 86863481 86863590 86863481 ID=Msa1222610-mRNA-1:exon:31286;Parent=Msa1222610-mRNA-1
chr8_1 exon 86864851 86864925 86864851 ID=Msa1222610-mRNA-1:exon:31287;Parent=Msa1222610-mRNA-1
chr8_1 exon 86866542 86866857 86866542 ID=Msa1222610-mRNA-1:exon:31288;Parent=Msa1222610-mRNA-1
chr8_1 exon 86866910 86867137 86866910 ID=Msa1222610-mRNA-1:exon:31289;Parent=Msa1222610-mRNA-1
chr8_1 five_prime_UTR 86862738 86862930 86862738 ID=Msa1222610-mRNA-1:five_prime_utr;Parent=Msa1222610-mRNA-1
chr8_1 CDS 86862931 86863000 86862931 ID=Msa1222610-mRNA-1:cds;Parent=Msa1222610-mRNA-1
chr8_1 CDS 86863087 86863211 86863087 ID=Msa1222610-mRNA-1:cds;Parent=Msa1222610-mRNA-1
chr8_1 CDS 86863296 86863392 86863296 ID=Msa1222610-mRNA-1:cds;Parent=Msa1222610-mRNA-1
chr8_1 CDS 86863481 86863590 86863481 ID=Msa1222610-mRNA-1:cds;Parent=Msa1222610-mRNA-1
chr8_1 CDS 86864851 86864925 86864851 ID=Msa1222610-mRNA-1:cds;Parent=Msa1222610-mRNA-1
chr8_1 CDS 86866542 86866592 86866542 ID=Msa1222610-mRNA-1:cds;Parent=Msa1222610-mRNA-1
chr8_1 three_prime_UTR 86866593 86866857 86866593 ID=Msa1222610-mRNA-1:three_prime_utr;Parent=Msa1222610-mRNA-1
chr8_1 three_prime_UTR 86866910 86867137 86866910 ID=Msa1222610-mRNA-1:three_prime_utr;Parent=Msa1222610-mRNA-1
Gene Sequence

>Msa1222610

ATGGGTAACACATCTTCCATGCTCACACAGTACGACATTGAAGAAGTTCAACAACACTGCAAACACGCATTTACTCAGCAAGAGATCGTTTCACTTTACCAGCGTTTCTGTCAACTCGATCGCAACAACTGTGGTTTCATTCCTTCGGATGAATTTCTCTCCATTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGTTTGCTGAGAATGCTAGATGGCTTTAACTTCAAGGAATTTATAGCTTTCTTGTCTGCATTTAGTCCACGCGCCACTCTTCAACACAAAATTGAATTTATTTTCAAGGTTTATGATACGGATTGCAATGGAAAAGTTAGTTTTGATGATATGTTGACGGTTTTGAGGGATTTGACTGGACAATATATGTCTGAACATCAAAGAAAGGAAGTTCTGGCCCAGGTTCTTGAAGAAGCTGGTTATACAAAGGATTCTTTCTTAGTCTTGTCTGACTTCATGAAGATTCTTGGCAATTCGGATTTGAAGATGGAAGCCGAGGTTCCGGTGGATTAG
Protein sequence

>Msa1222610

MGNTSSMLTQYDIEEVQQHCKHAFTQQEIVSLYQRFCQLDRNNCGFIPSDEFLSIPEFAVNPLSQSLLRMLDGFNFKEFIAFLSAFSPRATLQHKIEFIFKVYDTDCNGKVSFDDMLTVLRDLTGQYMSEHQRKEVLAQVLEEAGYTKDSFLVLSDFMKILGNSDLKMEAEVPVD*