AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1406450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406450 MtrunA17_Chr4g0061881 45.149 536 245 13 79 582 71 589 9.46e-137 414
Msa1406450 MtrunA17_Chr2g0307851 41.808 531 271 9 79 583 84 602 2.42e-126 387
Msa1406450 MtrunA17_Chr4g0069071 39.628 376 207 6 130 494 5 371 1.99e-74 243
Msa1406450 MtrunA17_Chr4g0073611 35.197 304 160 8 149 445 2 275 4.32e-46 164
Msa1406450 MtrunA17_Chr5g0408331 31.856 361 159 12 76 429 32 312 4.22e-40 149
Msa1406450 MtrunA17_Chr4g0061841 33.660 306 110 8 148 442 8 231 3.05e-37 139
Msa1406450 MtrunA17_Chr4g0076561 37.255 204 100 3 337 539 10 186 1.04e-34 130
Msa1406450 MtrunA17_Chr5g0437391 30.460 348 179 9 210 553 12 300 1.52e-34 134
Msa1406450 MtrunA17_Chr8g0344851 41.885 191 95 6 411 594 1 182 2.36e-34 129
Msa1406450 MtrunA17_Chr4g0061831 52.294 109 51 1 473 581 9 116 9.59e-32 119
Msa1406450 MtrunA17_Chr4g0064001 43.537 147 68 3 436 582 4 135 6.00e-25 103
Msa1406450 MtrunA17_Chr4g0076571 55.128 78 26 1 144 221 1 69 4.26e-21 88.6
Msa1406450 MtrunA17_Chr8g0344821 44.444 99 53 1 484 582 11 107 8.20e-21 88.2
Msa1406450 MtrunA17_Chr5g0437441 51.648 91 38 3 107 194 7 94 1.27e-20 87.4
Msa1406450 MtrunA17_Chr8g0344831 43.750 112 58 2 326 432 7 118 3.13e-18 80.9
Msa1406450 MtrunA17_Chr5g0437451 35.507 138 68 4 443 578 30 148 1.37e-16 77.4
Msa1406450 MtrunA17_Chr4g0073621 61.017 59 21 1 526 582 1 59 3.76e-16 73.6
Msa1406450 MtrunA17_Chr4g0069081 44.706 85 47 0 506 590 1 85 3.96e-16 74.7
Msa1406450 MtrunA17_Chr5g0408341 63.462 52 19 0 531 582 1 52 2.87e-14 70.5
Msa1406450 MtrunA17_Chr4g0063991 49.254 67 33 1 338 403 1 67 2.27e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406450 AT1G73990.1 38.475 590 320 13 22 582 32 607 9.84e-119 369
Msa1406450 AT1G73990.2 37.448 478 261 9 79 530 90 555 1.35e-92 298

Find 178 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATTTCGTCCCGCATTC+TGG 0.209844 tig0023210:+6922 Msa1406450:CDS
GAAGATGAGCGGATCATAAA+TGG 0.215556 tig0023210:+8170 Msa1406450:CDS
TGTGCTAAGAGCTTGCTTTA+AGG 0.216377 tig0023210:-10444 None:intergenic
GCTTGACTCTGCTGTTTAAA+TGG 0.219189 tig0023210:+10281 Msa1406450:three_prime_UTR
ATAGATTGTAGGTTACTTTC+AGG 0.236540 tig0023210:+7606 Msa1406450:CDS
GATAGGCAAAATCACATTAT+AGG 0.245255 tig0023210:-10587 None:intergenic
TTGTGAATGTGAGGGGTTTC+GGG 0.245290 tig0023210:-6751 None:intergenic
TTTGTGAATGTGAGGGGTTT+CGG 0.257624 tig0023210:-6752 None:intergenic
TATTAGCATGTAGATGATTT+AGG 0.257669 tig0023210:+10187 Msa1406450:three_prime_UTR
TTGGTATAAGTACCCATTTC+CGG 0.263741 tig0023210:-10048 None:intergenic
CTCACTTATACATGTCAAAT+TGG 0.274908 tig0023210:+8020 Msa1406450:CDS
CCATTGGTTGATGTGCATTC+AGG 0.286389 tig0023210:+10112 Msa1406450:exon
GAGAGTTCAACCAGATTAAT+AGG 0.304701 tig0023210:-8392 None:intergenic
AACAGCTCCTTCTTCCAATC+AGG 0.317463 tig0023210:-10072 None:intergenic
AGATTGCCCAAGGGCGGCTT+TGG 0.320112 tig0023210:+8267 Msa1406450:CDS
TACTTAGACATGACTTAGTT+TGG 0.326609 tig0023210:+10343 Msa1406450:three_prime_UTR
ATGACTTAGTTTGGCCAAAC+TGG 0.336189 tig0023210:+10352 Msa1406450:three_prime_UTR
TTGTATAACTTCTCAGTGTT+TGG 0.338375 tig0023210:-8059 None:intergenic
TAGGTTACTTTCAGGGTTGA+TGG 0.343659 tig0023210:+7614 Msa1406450:CDS
AGGTATATTAGCCTTCAATT+TGG 0.345021 tig0023210:-8360 None:intergenic
CATCACTGTTCAAATTTGAT+AGG 0.347256 tig0023210:-10604 None:intergenic
GGGCTATCAATACTTGTATC+TGG 0.347744 tig0023210:-7354 None:intergenic
AACTGGACAAAGCCCGGAAA+TGG 0.348893 tig0023210:+10035 Msa1406450:CDS
CTGGTATGCTTTGTTTGTCC+TGG 0.349003 tig0023210:+10647 Msa1406450:three_prime_UTR
TAGAAAATTGGATAGATTGT+AGG 0.350787 tig0023210:+7595 Msa1406450:CDS
GTGCTAAGAGCTTGCTTTAA+GGG 0.353149 tig0023210:-10443 None:intergenic
TAACAGAAGGGAAGCCAGTT+TGG 0.364170 tig0023210:-10366 None:intergenic
ACCAGTTGGCACTGACTCTA+AGG 0.365682 tig0023210:+7047 Msa1406450:CDS
TGTAGATGATTTAGGCCATT+TGG 0.369425 tig0023210:+10195 Msa1406450:three_prime_UTR
TCCCGGTCCAAAGCCGCCCT+TGG 0.369925 tig0023210:-8274 None:intergenic
TTGTTATGGTTTCTTCTTCA+AGG 0.372590 tig0023210:+7517 Msa1406450:CDS
ATTGAGATTATCCGTGGGGC+TGG 0.376386 tig0023210:+7804 Msa1406450:CDS
ATCGGTGTTATTAGAGTTTG+TGG 0.378619 tig0023210:+7750 Msa1406450:CDS
TGGTATAAGTACCCATTTCC+GGG 0.381711 tig0023210:-10047 None:intergenic
AAGATGTAACTGGCTTGTTA+TGG 0.382012 tig0023210:+7503 Msa1406450:CDS
TCTTCTTCCACTTCAGGTAA+TGG 0.382352 tig0023210:+6871 Msa1406450:CDS
ATTGTCGTGAAGTAGAAAAT+TGG 0.383838 tig0023210:+7583 Msa1406450:CDS
TCATCTTCATGTGGCATGAT+TGG 0.388034 tig0023210:-8155 None:intergenic
ACGGGTCTCAGTAGGAGATT+TGG 0.389865 tig0023210:+7654 Msa1406450:CDS
GCCCAAGGGCGGCTTTGGAC+CGG 0.392493 tig0023210:+8272 Msa1406450:CDS
TCAAAATAGACCTATTAATC+TGG 0.409814 tig0023210:+8382 Msa1406450:CDS
CTTATCAGAACACAACAAAC+TGG 0.418408 tig0023210:+10018 Msa1406450:CDS
CTCCTCCTGGACTGTCAATC+CGG 0.422871 tig0023210:-7857 None:intergenic
AAGTAAAGATCGATGACAAT+AGG 0.426110 tig0023210:-10325 None:intergenic
CCCAAGGGCGGCTTTGGACC+GGG 0.429403 tig0023210:+8273 Msa1406450:CDS
TATGTTTGTGCATTATTGTC+TGG 0.433909 tig0023210:+10628 Msa1406450:three_prime_UTR
GATGTGCATTCAGGAATAAC+AGG 0.437794 tig0023210:+10121 Msa1406450:exon
GGTGCATATTTGATTGCAAC+TGG 0.441687 tig0023210:+7972 Msa1406450:CDS
CCCGGTCCAAAGCCGCCCTT+GGG 0.444189 tig0023210:-8273 None:intergenic
GTAAAACAACAGTCCTTTGA+AGG 0.445649 tig0023210:-9996 None:intergenic
GAAGTTTACAAAGTCTTTGT+GGG 0.446335 tig0023210:+8200 Msa1406450:CDS
GATCAAATGCGGCTTTCATA+AGG 0.449687 tig0023210:-7098 None:intergenic
GGAATCGATGAAGGCAGTTA+AGG 0.451737 tig0023210:+7473 Msa1406450:CDS
TATTTGATTGCAACTGGAGC+AGG 0.455192 tig0023210:+7978 Msa1406450:CDS
AACACGGTCCACAATGGAAA+TGG 0.473603 tig0023210:-6803 None:intergenic
TAAATACAATCCGTGTTCAC+AGG 0.476299 tig0023210:-7375 None:intergenic
TAGTGTGCGGTAGAATTTGA+GGG 0.478545 tig0023210:-6776 None:intergenic
CACATCTACACTTAACGATC+TGG 0.479653 tig0023210:-8237 None:intergenic
GACGAAATCAAACTCACCCT+TGG 0.479725 tig0023210:-6911 None:intergenic
ACCTTAGAGTCAGTGCCAAC+TGG 0.479839 tig0023210:-7048 None:intergenic
ATGAATTGCACCTTCATTGT+GGG 0.482660 tig0023210:-7775 None:intergenic
AGAAGTTTACAAAGTCTTTG+TGG 0.483301 tig0023210:+8199 Msa1406450:CDS
ACCGTTACCATTACCTGAAG+TGG 0.483377 tig0023210:-6878 None:intergenic
TTGAGATTATCCGTGGGGCT+GGG 0.490077 tig0023210:+7805 Msa1406450:CDS
ACAACAAACTGGACAAAGCC+CGG 0.491518 tig0023210:+10029 Msa1406450:CDS
CTTCAAGAAATTTATTGTGA+AGG 0.493765 tig0023210:+6945 Msa1406450:CDS
ACTGGACAAAGCCCGGAAAT+GGG 0.496394 tig0023210:+10036 Msa1406450:CDS
CTATCTTCACACCATAATAC+AGG 0.496409 tig0023210:-7264 None:intergenic
ATCTTGTTGAAGTGCAGTAT+AGG 0.498853 tig0023210:+7403 Msa1406450:CDS
AACTAGCATATAAAACCAAA+TGG 0.499171 tig0023210:-10210 None:intergenic
TAGATTGTAGGTTACTTTCA+GGG 0.501518 tig0023210:+7607 Msa1406450:CDS
GTACTTATACCAACCCTGAT+TGG 0.505029 tig0023210:+10058 Msa1406450:CDS
CTTCTGTTAAAGCAAGCTCT+TGG 0.507466 tig0023210:+10380 Msa1406450:three_prime_UTR
ATAGTGTGCGGTAGAATTTG+AGG 0.507587 tig0023210:-6777 None:intergenic
CTTGTATCTGGAGAATCATC+CGG 0.508155 tig0023210:-7342 None:intergenic
AGGATGATATAAGATGTAAC+TGG 0.510806 tig0023210:+7493 Msa1406450:CDS
GAAGTGCAGTATAGGACAGC+GGG 0.512732 tig0023210:+7411 Msa1406450:CDS
TGTTGCTATAGCCAAATTGA+AGG 0.514181 tig0023210:+8349 Msa1406450:CDS
ACAGCGGGGAAATACAAATC+TGG 0.516542 tig0023210:+7426 Msa1406450:CDS
CAAGAGCTTGCTTTAACAGA+AGG 0.519724 tig0023210:-10379 None:intergenic
CAAGCGCGTCAACCAACATA+TGG 0.522040 tig0023210:-8310 None:intergenic
ATGTTGGTTGACGCGCTTGG+TGG 0.522308 tig0023210:+8314 Msa1406450:CDS
CGTTTCTTCATTATCAGACA+AGG 0.522976 tig0023210:+7941 Msa1406450:CDS
TGCACTGTTGGTATGTCAAA+TGG 0.523328 tig0023210:+7717 Msa1406450:CDS
CTCCTTCTTCCAATCAGGGT+TGG 0.525262 tig0023210:-10067 None:intergenic
ATTTCTTGAAGCCAGAATGC+GGG 0.525455 tig0023210:-6933 None:intergenic
TCAACATCAGTGTACTCCAT+TGG 0.529318 tig0023210:+10096 Msa1406450:CDS
ACGAAATCAAACTCACCCTT+GGG 0.529474 tig0023210:-6910 None:intergenic
GTTTGAAGGCTGTAATCCTC+CGG 0.530693 tig0023210:+7838 Msa1406450:CDS
TTACAAGGAAATATTTCCGA+TGG 0.530898 tig0023210:+7024 Msa1406450:CDS
TTACAAAGTCTTTGTGGGCA+AGG 0.531876 tig0023210:+8205 Msa1406450:CDS
AAGATGAGCGGATCATAAAT+GGG 0.535057 tig0023210:+8171 Msa1406450:CDS
TAAATATGCAGAATTATTTG+AGG 0.535075 tig0023210:+8121 Msa1406450:CDS
GTCAGTGCCAACTGGTCCAT+CGG 0.538824 tig0023210:-7040 None:intergenic
TGAAGGATGGGAATCGATGA+AGG 0.539636 tig0023210:+7464 Msa1406450:CDS
GGACATTTAACCACAGATGA+AGG 0.540268 tig0023210:+7447 Msa1406450:CDS
ACTATCTTCCATTTCCATTG+TGG 0.545148 tig0023210:+6795 Msa1406450:CDS
GTTGTTTGAGATGAAGATGA+AGG 0.549690 tig0023210:-6707 None:intergenic
GCCTCGGAGCATGTGGAACA+TGG 0.549933 tig0023210:+6982 Msa1406450:CDS
CTCAAAACAGTATCAAATCC+AGG 0.550202 tig0023210:-10254 None:intergenic
AGATTATCACGGGTCTCAGT+AGG 0.550801 tig0023210:+7646 Msa1406450:CDS
CATGAATTGCACCTTCATTG+TGG 0.551816 tig0023210:-7776 None:intergenic
GCGGCTTTGGACCGGGAAGG+CGG 0.553063 tig0023210:+8280 Msa1406450:CDS
ACTAACGTTGGTTCTTGAGT+AGG 0.554396 tig0023210:-6841 None:intergenic
TTCAAGGAAAATAAGAGAAG+AGG 0.555199 tig0023210:+7533 Msa1406450:CDS
GTTTGTGGATCCCACAATGA+AGG 0.556262 tig0023210:+7765 Msa1406450:CDS
AGGGCGGCTTTGGACCGGGA+AGG 0.558400 tig0023210:+8277 Msa1406450:CDS
GATTTGATTGAGATTATCCG+TGG 0.559731 tig0023210:+7798 Msa1406450:CDS
CTGTTGGTATGTCAAATGGC+AGG 0.562620 tig0023210:+7721 Msa1406450:CDS
TCCACTTCAGGTAATGGTAA+CGG 0.563991 tig0023210:+6877 Msa1406450:CDS
TCTGTTAGCCTCGGAGCATG+TGG 0.564327 tig0023210:+6975 Msa1406450:CDS
ACAGGTTCACAGATAGCTCC+AGG 0.568791 tig0023210:-10665 None:intergenic
TCTGATAATGAAGAAACGAC+TGG 0.568882 tig0023210:-7936 None:intergenic
ATTTAACCACAGATGAAGGA+TGG 0.568911 tig0023210:+7451 Msa1406450:CDS
GAGAAGTTATACAAATACAT+TGG 0.571158 tig0023210:+8068 Msa1406450:CDS
ATAACACAGTTCAAAACTGA+TGG 0.572477 tig0023210:-10531 None:intergenic
TACCAACCCTGATTGGAAGA+AGG 0.572792 tig0023210:+10065 Msa1406450:CDS
GGGGTTTCGGGAAGATGAAG+AGG 0.574598 tig0023210:-6739 None:intergenic
AAATACAATCCGTGTTCACA+GGG 0.575360 tig0023210:-7374 None:intergenic
ATTACTAATGTAGAGAGTGA+AGG 0.576126 tig0023210:-10481 None:intergenic
TTCAGGAATAACAGGAGGGA+TGG 0.577523 tig0023210:+10129 Msa1406450:three_prime_UTR
ATATTGAGAATCAATTTACA+AGG 0.578147 tig0023210:+7009 Msa1406450:CDS
TGAGGGATTTGTGAATGTGA+GGG 0.580001 tig0023210:-6759 None:intergenic
GCTAGTGATAAGATTATCAC+GGG 0.582665 tig0023210:+7636 Msa1406450:CDS
ACAGCTCCTTCTTCCAATCA+GGG 0.583747 tig0023210:-10071 None:intergenic
GTGGTTGACGAGATTGCCCA+AGG 0.585641 tig0023210:+8257 Msa1406450:CDS
AATTATTTGAGGCTGATCAT+CGG 0.586001 tig0023210:+8132 Msa1406450:CDS
TTGACGAGATTGCCCAAGGG+CGG 0.586860 tig0023210:+8261 Msa1406450:CDS
ATCCTCCGGATTGACAGTCC+AGG 0.587117 tig0023210:+7852 Msa1406450:CDS
TATTGATAGCCCTGTGAACA+CGG 0.587964 tig0023210:+7365 Msa1406450:CDS
CATATGTTGGTTGACGCGCT+TGG 0.589554 tig0023210:+8311 Msa1406450:CDS
AAGAGCTTGCTTTAACAGAA+GGG 0.590552 tig0023210:-10378 None:intergenic
CGATTCCCATCCTTCATCTG+TGG 0.594942 tig0023210:-7457 None:intergenic
TGGATGCTGTATGCCTTCAA+AGG 0.595183 tig0023210:+9983 Msa1406450:CDS
GGCGGCACTGAACCATATGT+TGG 0.595357 tig0023210:+8298 Msa1406450:CDS
GGCTAGTGATAAGATTATCA+CGG 0.596190 tig0023210:+7635 Msa1406450:CDS
GGTTAAGACTCTGTTAGCCT+CGG 0.596334 tig0023210:+6966 Msa1406450:CDS
AATATTTCCGATGGACCAGT+TGG 0.597583 tig0023210:+7033 Msa1406450:CDS
TCTGGAGAATCATCCGGAGG+GGG 0.598601 tig0023210:-7336 None:intergenic
TTTAACCACAGATGAAGGAT+GGG 0.605296 tig0023210:+7452 Msa1406450:CDS
TTGAGGGATTTGTGAATGTG+AGG 0.606072 tig0023210:-6760 None:intergenic
GAGGGATTTGTGAATGTGAG+GGG 0.607039 tig0023210:-6758 None:intergenic
CTTTGTGGGCAAGGTAGCGA+CGG 0.609032 tig0023210:+8214 Msa1406450:CDS
CTCCTGGACTGTCAATCCGG+AGG 0.612922 tig0023210:-7854 None:intergenic
CAGATCGTTAAGTGTAGATG+TGG 0.613543 tig0023210:+8238 Msa1406450:CDS
TGTTGGTATGTCAAATGGCA+GGG 0.616785 tig0023210:+7722 Msa1406450:CDS
AATTTCTTGAAGCCAGAATG+CGG 0.621440 tig0023210:-6934 None:intergenic
TTCAAAAGTTGACAGAGTGA+AGG 0.622058 tig0023210:-10564 None:intergenic
TGCTGCAACACGGTCCACAA+TGG 0.622831 tig0023210:-6809 None:intergenic
TATCTGGAGAATCATCCGGA+GGG 0.623341 tig0023210:-7338 None:intergenic
TCAAATGGCAGGGAAAAGAT+CGG 0.628546 tig0023210:+7732 Msa1406450:CDS
AAGGAGGTTCTTCACAGAGG+TGG 0.630578 tig0023210:+8098 Msa1406450:CDS
GAAGATGAAAACACTAACGT+TGG 0.631994 tig0023210:-6853 None:intergenic
ATGATCCGCTCATCTTCATG+TGG 0.633308 tig0023210:-8164 None:intergenic
ATCTGGAGAATCATCCGGAG+GGG 0.638622 tig0023210:-7337 None:intergenic
TTATCAGACAAGGCAACTAG+TGG 0.639169 tig0023210:+7951 Msa1406450:CDS
GTGCATTCAGGAATAACAGG+AGG 0.649237 tig0023210:+10124 Msa1406450:three_prime_UTR
CCTGAATGCACATCAACCAA+TGG 0.649333 tig0023210:-10112 None:intergenic
ATAATAAACTCAACTCACAC+AGG 0.658801 tig0023210:-10683 None:intergenic
GTATCTGGAGAATCATCCGG+AGG 0.659830 tig0023210:-7339 None:intergenic
ATTTGATTGAGATTATCCGT+GGG 0.666741 tig0023210:+7799 Msa1406450:CDS
AGAAACACAGCGGACACACG+AGG 0.666748 tig0023210:-7120 None:intergenic
TGCATTCAGGAATAACAGGA+GGG 0.668569 tig0023210:+10125 Msa1406450:three_prime_UTR
TTTCGGGAAGATGAAGAGGA+TGG 0.668798 tig0023210:-6735 None:intergenic
TCATGCCACATGAAGATGAG+CGG 0.671782 tig0023210:+8159 Msa1406450:CDS
AAGAAGGAGGTTCTTCACAG+AGG 0.681303 tig0023210:+8095 Msa1406450:CDS
CTCCGGATTGACAGTCCAGG+AGG 0.681617 tig0023210:+7855 Msa1406450:CDS
TGGTTGACGAGATTGCCCAA+GGG 0.693802 tig0023210:+8258 Msa1406450:CDS
GAAGTAAAGATGCTGCAACA+CGG 0.695209 tig0023210:-6819 None:intergenic
TCCATGTTCCACATGCTCCG+AGG 0.700945 tig0023210:-6983 None:intergenic
CTTTAAGGGAAGCCTAACAG+TGG 0.711846 tig0023210:-10429 None:intergenic
TATGCTTTGAAATCGAGCAG+TGG 0.712517 tig0023210:-7678 None:intergenic
TGGAAATGGAAGATAGTGTG+CGG 0.715103 tig0023210:-6789 None:intergenic
TGAAGTGCAGTATAGGACAG+CGG 0.718438 tig0023210:+7410 Msa1406450:CDS
AACTATATTAAGAAACACAG+CGG 0.726464 tig0023210:-7130 None:intergenic
AAGTGCAGTATAGGACAGCG+GGG 0.749747 tig0023210:+7412 Msa1406450:CDS
TTTGATTGAGATTATCCGTG+GGG 0.755479 tig0023210:+7800 Msa1406450:CDS
GGACACACGAGGATCAAATG+CGG 0.763717 tig0023210:-7109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCAAATTTTAAAAAATC+TGG + tig0023210:7198-7217 Msa1406450:CDS 10.0%
!!! AATATAGTTGATTTTTATTG+TGG + tig0023210:7144-7163 Msa1406450:CDS 15.0%
!!! TTTTAAAAAATCTGGTAAAA+AGG + tig0023210:7206-7225 Msa1406450:CDS 15.0%
!! ATATTGAGAATCAATTTACA+AGG + tig0023210:7009-7028 Msa1406450:CDS 20.0%
!!! TAAAAAGGTTATAGCTTTTA+TGG + tig0023210:7221-7240 Msa1406450:CDS 20.0%
!! TAAATATGCAGAATTATTTG+AGG + tig0023210:8121-8140 Msa1406450:CDS 20.0%
!!! ACTATTTTTCTTTCTTTTAC+TGG + tig0023210:8448-8467 Msa1406450:intron 20.0%
!! GAAAAAAACCTTACAAAATT+GGG - tig0023210:8582-8601 None:intergenic 20.0%
!! AGAAAAAAACCTTACAAAAT+TGG - tig0023210:8583-8602 None:intergenic 20.0%
!!! TTTGTAAGGTTTTTTTCTTT+TGG + tig0023210:8585-8604 Msa1406450:intron 20.0%
!! AATTTAATATTCTTCCTTCA+AGG + tig0023210:8931-8950 Msa1406450:intron 20.0%
!!! ATTTTCTTTGAGAACTAAAA+AGG + tig0023210:9041-9060 Msa1406450:intron 20.0%
!!! TTTTTAAAGTAATTAGCGTA+TGG - tig0023210:9248-9267 None:intergenic 20.0%
!!! AATTTTCTAAAATCAAGGAA+TGG - tig0023210:9873-9892 None:intergenic 20.0%
!!! ATTCCTTGATTTTAGAAAAT+TGG + tig0023210:9872-9891 Msa1406450:intron 20.0%
!!! TAAGTCTAAAATTTACAAAC+CGG - tig0023210:9930-9949 None:intergenic 20.0%
!!! GTTTGTAAATTTTAGACTTA+TGG + tig0023210:9930-9949 Msa1406450:intron 20.0%
! CTTCAAGAAATTTATTGTGA+AGG + tig0023210:6945-6964 Msa1406450:CDS 25.0%
! AACTATATTAAGAAACACAG+CGG - tig0023210:7133-7152 None:intergenic 25.0%
!!! TAGTTGATTTTTATTGTGGT+TGG + tig0023210:7148-7167 Msa1406450:CDS 25.0%
!!! AGTTGATTTTTATTGTGGTT+GGG + tig0023210:7149-7168 Msa1406450:CDS 25.0%
! TAGAAAATTGGATAGATTGT+AGG + tig0023210:7595-7614 Msa1406450:CDS 25.0%
! GAGAAGTTATACAAATACAT+TGG + tig0023210:8068-8087 Msa1406450:CDS 25.0%
!!! CAAATACATTGGTTTTAAGA+AGG + tig0023210:8079-8098 Msa1406450:CDS 25.0%
!! AGATTAATAGGTCTATTTTG+AGG - tig0023210:8383-8402 None:intergenic 25.0%
! TCAAAATAGACCTATTAATC+TGG + tig0023210:8382-8401 Msa1406450:CDS 25.0%
!!! AACTTTTTCCCAATTTTGTA+AGG + tig0023210:8571-8590 Msa1406450:intron 25.0%
! GGGAAAAAACAAACAAAAAA+GGG - tig0023210:8760-8779 None:intergenic 25.0%
! AAAAACAGAGAATTCAAAAC+AGG - tig0023210:9483-9502 None:intergenic 25.0%
!!! TTACCAGTAATTTTTTTGCT+AGG + tig0023210:9818-9837 Msa1406450:intron 25.0%
! AATCCTAGCAAAAAAATTAC+TGG - tig0023210:9824-9843 None:intergenic 25.0%
!!! AGTAATTTTTTTGCTAGGAT+TGG + tig0023210:9823-9842 Msa1406450:intron 25.0%
!!! GAACCAATTTTCTAAAATCA+AGG - tig0023210:9878-9897 None:intergenic 25.0%
! TGCAGAAAAAAGAAAACAAA+TGG - tig0023210:9960-9979 None:intergenic 25.0%
! TATTAGCATGTAGATGATTT+AGG + tig0023210:10187-10206 Msa1406450:three_prime_UTR 25.0%
! AACTAGCATATAAAACCAAA+TGG - tig0023210:10213-10232 None:intergenic 25.0%
!!! TATATGCTAGTTTTTTAGTG+TGG + tig0023210:10221-10240 Msa1406450:three_prime_UTR 25.0%
!!! ATATGCTAGTTTTTTAGTGT+GGG + tig0023210:10222-10241 Msa1406450:three_prime_UTR 25.0%
TTACAAGGAAATATTTCCGA+TGG + tig0023210:7024-7043 Msa1406450:CDS 30.0%
! TAGCTTTTATGGCTTCATTT+TGG + tig0023210:7232-7251 Msa1406450:CDS 30.0%
AGGATGATATAAGATGTAAC+TGG + tig0023210:7493-7512 Msa1406450:CDS 30.0%
TTGTTATGGTTTCTTCTTCA+AGG + tig0023210:7517-7536 Msa1406450:CDS 30.0%
TTCAAGGAAAATAAGAGAAG+AGG + tig0023210:7533-7552 Msa1406450:CDS 30.0%
!!! GAGGAGATTCTAACTTTTTT+TGG + tig0023210:7552-7571 Msa1406450:CDS 30.0%
!!! TCTAACTTTTTTTGGTAGTG+AGG + tig0023210:7560-7579 Msa1406450:CDS 30.0%
ATTGTCGTGAAGTAGAAAAT+TGG + tig0023210:7583-7602 Msa1406450:CDS 30.0%
! ATAGATTGTAGGTTACTTTC+AGG + tig0023210:7606-7625 Msa1406450:CDS 30.0%
! TAGATTGTAGGTTACTTTCA+GGG + tig0023210:7607-7626 Msa1406450:CDS 30.0%
CAAGTTAAAAAATGCACTGT+TGG + tig0023210:7705-7724 Msa1406450:CDS 30.0%
ATTTGATTGAGATTATCCGT+GGG + tig0023210:7799-7818 Msa1406450:CDS 30.0%
!! TTTTGTTGGCTGATCAATTA+TGG + tig0023210:7883-7902 Msa1406450:CDS 30.0%
CTCACTTATACATGTCAAAT+TGG + tig0023210:8020-8039 Msa1406450:CDS 30.0%
TTGTATAACTTCTCAGTGTT+TGG - tig0023210:8062-8081 None:intergenic 30.0%
!!! ATACATTGGTTTTAAGAAGG+AGG + tig0023210:8082-8101 Msa1406450:CDS 30.0%
! AATTATTTGAGGCTGATCAT+CGG + tig0023210:8132-8151 Msa1406450:CDS 30.0%
AGAAGTTTACAAAGTCTTTG+TGG + tig0023210:8199-8218 Msa1406450:CDS 30.0%
GAAGTTTACAAAGTCTTTGT+GGG + tig0023210:8200-8219 Msa1406450:CDS 30.0%
!! AGGTATATTAGCCTTCAATT+TGG - tig0023210:8363-8382 None:intergenic 30.0%
!! TTTTACTGGTTGAACTCTTT+GGG + tig0023210:8462-8481 Msa1406450:intron 30.0%
!!! TATGTTTTTTTGCCGAAAAG+TGG + tig0023210:8489-8508 Msa1406450:intron 30.0%
!! TGCATTAAAAGTCCACTTTT+CGG - tig0023210:8504-8523 None:intergenic 30.0%
!!! GGTTTTTTTCTTTTGGAAAG+TGG + tig0023210:8592-8611 Msa1406450:intron 30.0%
! GACTTTTACATTGGATAGTT+TGG + tig0023210:8614-8633 Msa1406450:intron 30.0%
ACGTTCTACAAATGATTCAT+TGG - tig0023210:8729-8748 None:intergenic 30.0%
GGGGAAAAAACAAACAAAAA+AGG - tig0023210:8761-8780 None:intergenic 30.0%
! AAGCAAAGAGAATTCAAGTT+TGG - tig0023210:8883-8902 None:intergenic 30.0%
TTCTCTTTGCTTTGCAATAT+TGG + tig0023210:8891-8910 Msa1406450:intron 30.0%
TTGAATGAGATTTCAACAAG+TGG + tig0023210:8981-9000 Msa1406450:intron 30.0%
TGAATGAGATTTCAACAAGT+GGG + tig0023210:8982-9001 Msa1406450:intron 30.0%
AATAAATGCAAACAAGAGCT+TGG - tig0023210:9135-9154 None:intergenic 30.0%
! AGCTCTTGTTTGCATTTATT+TGG + tig0023210:9135-9154 Msa1406450:intron 30.0%
GACTTAAACATTCTCAAAAC+TGG - tig0023210:9179-9198 None:intergenic 30.0%
! AGTTTTTGTATGACACATAC+CGG + tig0023210:9409-9428 Msa1406450:intron 30.0%
TGACATAACACTATAATGAC+CGG - tig0023210:9431-9450 None:intergenic 30.0%
! TTTTATGCTCAACTTGTACA+TGG + tig0023210:9502-9521 Msa1406450:intron 30.0%
! AGGGATACACAAATTTTACA+TGG - tig0023210:9616-9635 None:intergenic 30.0%
!! ATGGATTAGTTAGGAATAGA+GGG - tig0023210:9635-9654 None:intergenic 30.0%
TATTCCTAACTAATCCATGA+AGG + tig0023210:9637-9656 Msa1406450:intron 30.0%
AATGATATTGTCAACCTTCA+TGG - tig0023210:9654-9673 None:intergenic 30.0%
! GCATTGACACTTAAATTGAA+TGG - tig0023210:9752-9771 None:intergenic 30.0%
! ACTGTTTGATGTATTTCTGT+CGG + tig0023210:9901-9920 Msa1406450:intron 30.0%
AAGTAAAGATCGATGACAAT+AGG - tig0023210:10328-10347 None:intergenic 30.0%
TACTTAGACATGACTTAGTT+TGG + tig0023210:10343-10362 Msa1406450:three_prime_UTR 30.0%
ATTACTAATGTAGAGAGTGA+AGG - tig0023210:10484-10503 None:intergenic 30.0%
ATAACACAGTTCAAAACTGA+TGG - tig0023210:10534-10553 None:intergenic 30.0%
GATAGGCAAAATCACATTAT+AGG - tig0023210:10590-10609 None:intergenic 30.0%
CATCACTGTTCAAATTTGAT+AGG - tig0023210:10607-10626 None:intergenic 30.0%
TATGTTTGTGCATTATTGTC+TGG + tig0023210:10628-10647 Msa1406450:three_prime_UTR 30.0%
ATAATAAACTCAACTCACAC+AGG - tig0023210:10686-10705 None:intergenic 30.0%
! GTTGTTTGAGATGAAGATGA+AGG - tig0023210:6710-6729 None:intergenic 35.0%
ACTATCTTCCATTTCCATTG+TGG + tig0023210:6795-6814 Msa1406450:CDS 35.0%
GAAGATGAAAACACTAACGT+TGG - tig0023210:6856-6875 None:intergenic 35.0%
! TTTTCATCTTCTTCCACTTC+AGG + tig0023210:6865-6884 Msa1406450:CDS 35.0%
AATTTCTTGAAGCCAGAATG+CGG - tig0023210:6937-6956 None:intergenic 35.0%
! ATAAGGTTTTCACTTAGCTG+AGG - tig0023210:7084-7103 None:intergenic 35.0%
CTATCTTCACACCATAATAC+AGG - tig0023210:7267-7286 None:intergenic 35.0%
AAATACAATCCGTGTTCACA+GGG - tig0023210:7377-7396 None:intergenic 35.0%
TAAATACAATCCGTGTTCAC+AGG - tig0023210:7378-7397 None:intergenic 35.0%
ATCTTGTTGAAGTGCAGTAT+AGG + tig0023210:7403-7422 Msa1406450:CDS 35.0%
ATTTAACCACAGATGAAGGA+TGG + tig0023210:7451-7470 Msa1406450:CDS 35.0%
TTTAACCACAGATGAAGGAT+GGG + tig0023210:7452-7471 Msa1406450:CDS 35.0%
!! AAGATGTAACTGGCTTGTTA+TGG + tig0023210:7503-7522 Msa1406450:CDS 35.0%
GGCTAGTGATAAGATTATCA+CGG + tig0023210:7635-7654 Msa1406450:CDS 35.0%
GCTAGTGATAAGATTATCAC+GGG + tig0023210:7636-7655 Msa1406450:CDS 35.0%
!! ATCGGTGTTATTAGAGTTTG+TGG + tig0023210:7750-7769 Msa1406450:CDS 35.0%
ATGAATTGCACCTTCATTGT+GGG - tig0023210:7778-7797 None:intergenic 35.0%
GATTTGATTGAGATTATCCG+TGG + tig0023210:7798-7817 Msa1406450:CDS 35.0%
TTTGATTGAGATTATCCGTG+GGG + tig0023210:7800-7819 Msa1406450:CDS 35.0%
TGGGTCATCAAAAAGTTTGA+AGG + tig0023210:7824-7843 Msa1406450:CDS 35.0%
! TCTGATAATGAAGAAACGAC+TGG - tig0023210:7939-7958 None:intergenic 35.0%
CGTTTCTTCATTATCAGACA+AGG + tig0023210:7941-7960 Msa1406450:CDS 35.0%
AAGATGAGCGGATCATAAAT+GGG + tig0023210:8171-8190 Msa1406450:CDS 35.0%
TGTTGCTATAGCCAAATTGA+AGG + tig0023210:8349-8368 Msa1406450:CDS 35.0%
GAGAGTTCAACCAGATTAAT+AGG - tig0023210:8395-8414 None:intergenic 35.0%
! CGTAATTTGAGGTTTAAACG+AGG + tig0023210:8417-8436 Msa1406450:intron 35.0%
!! CTTTTACTGGTTGAACTCTT+TGG + tig0023210:8461-8480 Msa1406450:intron 35.0%
!! TGGAAAGTGGACTTTTACAT+TGG + tig0023210:8605-8624 Msa1406450:intron 35.0%
TTGGATAGTTTGGATAGTCA+TGG + tig0023210:8624-8643 Msa1406450:intron 35.0%
!!! GTTTGTTTTTTCCCCTTTTC+TGG + tig0023210:8766-8785 Msa1406450:intron 35.0%
!! GTGATCAAATTTTAGTCCAG+CGG - tig0023210:8801-8820 None:intergenic 35.0%
AGTAACAAGTGCTTAGTTGT+TGG - tig0023210:8847-8866 None:intergenic 35.0%
TCTTTGCTTTGCAATATTGG+TGG + tig0023210:8894-8913 Msa1406450:intron 35.0%
! GCAATATTGGTGGTATCTAA+TGG + tig0023210:8904-8923 Msa1406450:intron 35.0%
AATATTCTTCCTTCAAGGAC+AGG + tig0023210:8936-8955 Msa1406450:intron 35.0%
TCCAAATAACACTGCACTAT+CGG - tig0023210:9288-9307 None:intergenic 35.0%
TATGTACGTGAAGAATCGTT+TGG - tig0023210:9344-9363 None:intergenic 35.0%
! CGCTAACTGATTAACTTGAT+AGG + tig0023210:9372-9391 Msa1406450:intron 35.0%
GATTCTCTCATATTCCATGT+AGG + tig0023210:9578-9597 Msa1406450:intron 35.0%
!! CATGGATTAGTTAGGAATAG+AGG - tig0023210:9636-9655 None:intergenic 35.0%
!! TCAACCTTCATGGATTAGTT+AGG - tig0023210:9644-9663 None:intergenic 35.0%
GGAATGGCATTAGTAGTTTA+CGG - tig0023210:9857-9876 None:intergenic 35.0%
! GTTTTCTTTTTTCTGCAGTC+TGG + tig0023210:9963-9982 Msa1406450:intron 35.0%
GTAAAACAACAGTCCTTTGA+AGG - tig0023210:9999-10018 None:intergenic 35.0%
CTTATCAGAACACAACAAAC+TGG + tig0023210:10018-10037 Msa1406450:CDS 35.0%
TTGGTATAAGTACCCATTTC+CGG - tig0023210:10051-10070 None:intergenic 35.0%
TGTAGATGATTTAGGCCATT+TGG + tig0023210:10195-10214 Msa1406450:three_prime_UTR 35.0%
CTCAAAACAGTATCAAATCC+AGG - tig0023210:10257-10276 None:intergenic 35.0%
! AAGAGCTTGCTTTAACAGAA+GGG - tig0023210:10381-10400 None:intergenic 35.0%
! GTTGACATTTTACCACTGTT+AGG + tig0023210:10417-10436 Msa1406450:three_prime_UTR 35.0%
TTCAAAAGTTGACAGAGTGA+AGG - tig0023210:10567-10586 None:intergenic 35.0%
TTTGTGAATGTGAGGGGTTT+CGG - tig0023210:6755-6774 None:intergenic 40.0%
TGAGGGATTTGTGAATGTGA+GGG - tig0023210:6762-6781 None:intergenic 40.0%
TTGAGGGATTTGTGAATGTG+AGG - tig0023210:6763-6782 None:intergenic 40.0%
TAGTGTGCGGTAGAATTTGA+GGG - tig0023210:6779-6798 None:intergenic 40.0%
ATAGTGTGCGGTAGAATTTG+AGG - tig0023210:6780-6799 None:intergenic 40.0%
TGGAAATGGAAGATAGTGTG+CGG - tig0023210:6792-6811 None:intergenic 40.0%
GAAGTAAAGATGCTGCAACA+CGG - tig0023210:6822-6841 None:intergenic 40.0%
!! ACTAACGTTGGTTCTTGAGT+AGG - tig0023210:6844-6863 None:intergenic 40.0%
TCTTCTTCCACTTCAGGTAA+TGG + tig0023210:6871-6890 Msa1406450:CDS 40.0%
! TCCACTTCAGGTAATGGTAA+CGG + tig0023210:6877-6896 Msa1406450:CDS 40.0%
!!! TAACGGTGTTGATTTTCCCA+AGG + tig0023210:6894-6913 Msa1406450:CDS 40.0%
!!! AACGGTGTTGATTTTCCCAA+GGG + tig0023210:6895-6914 Msa1406450:CDS 40.0%
ACGAAATCAAACTCACCCTT+GGG - tig0023210:6913-6932 None:intergenic 40.0%
ATTTCTTGAAGCCAGAATGC+GGG - tig0023210:6936-6955 None:intergenic 40.0%
AATATTTCCGATGGACCAGT+TGG + tig0023210:7033-7052 Msa1406450:CDS 40.0%
GATCAAATGCGGCTTTCATA+AGG - tig0023210:7101-7120 None:intergenic 40.0%
!!! GGAGTTTTGAGCCTGTATTA+TGG + tig0023210:7253-7272 Msa1406450:CDS 40.0%
CTTGTATCTGGAGAATCATC+CGG - tig0023210:7345-7364 None:intergenic 40.0%
GGGCTATCAATACTTGTATC+TGG - tig0023210:7357-7376 None:intergenic 40.0%
! TATTGATAGCCCTGTGAACA+CGG + tig0023210:7365-7384 Msa1406450:CDS 40.0%
GGACATTTAACCACAGATGA+AGG + tig0023210:7447-7466 Msa1406450:CDS 40.0%
! TAGGTTACTTTCAGGGTTGA+TGG + tig0023210:7614-7633 Msa1406450:CDS 40.0%
!! TATGCTTTGAAATCGAGCAG+TGG - tig0023210:7681-7700 None:intergenic 40.0%
TGCACTGTTGGTATGTCAAA+TGG + tig0023210:7717-7736 Msa1406450:CDS 40.0%
TGTTGGTATGTCAAATGGCA+GGG + tig0023210:7722-7741 Msa1406450:CDS 40.0%
TCAAATGGCAGGGAAAAGAT+CGG + tig0023210:7732-7751 Msa1406450:CDS 40.0%
CATGAATTGCACCTTCATTG+TGG - tig0023210:7779-7798 None:intergenic 40.0%
! TCCAGGAGGAGAATTTTTGT+TGG + tig0023210:7869-7888 Msa1406450:CDS 40.0%
TTATCAGACAAGGCAACTAG+TGG + tig0023210:7951-7970 Msa1406450:CDS 40.0%
GGTGCATATTTGATTGCAAC+TGG + tig0023210:7972-7991 Msa1406450:CDS 40.0%
TATTTGATTGCAACTGGAGC+AGG + tig0023210:7978-7997 Msa1406450:CDS 40.0%
TCATCTTCATGTGGCATGAT+TGG - tig0023210:8158-8177 None:intergenic 40.0%
GAAGATGAGCGGATCATAAA+TGG + tig0023210:8170-8189 Msa1406450:CDS 40.0%
TTACAAAGTCTTTGTGGGCA+AGG + tig0023210:8205-8224 Msa1406450:CDS 40.0%
CACATCTACACTTAACGATC+TGG - tig0023210:8240-8259 None:intergenic 40.0%
CAGATCGTTAAGTGTAGATG+TGG + tig0023210:8238-8257 Msa1406450:CDS 40.0%
TGAACTCTCTGCGTAATTTG+AGG + tig0023210:8406-8425 Msa1406450:intron 40.0%
TGGTTTCTTGCTGAAAAGTG+TGG + tig0023210:8644-8663 Msa1406450:intron 40.0%
AAGTGCTTAGTTGTTGGCAA+AGG - tig0023210:8841-8860 None:intergenic 40.0%
TGTTAATGTCCTGTCCTTGA+AGG - tig0023210:8948-8967 None:intergenic 40.0%
ATGCAAACAAGAGCTTGGAA+AGG - tig0023210:9130-9149 None:intergenic 40.0%
! GCATTTATTTGGCTCACACA+TGG + tig0023210:9146-9165 Msa1406450:intron 40.0%
CAGCATGTAGCTGATATATC+TGG + tig0023210:9212-9231 Msa1406450:intron 40.0%
! TCCGATAGTGCAGTGTTATT+TGG + tig0023210:9284-9303 Msa1406450:intron 40.0%
TGGTATAAGTACCCATTTCC+GGG - tig0023210:10050-10069 None:intergenic 40.0%
GTACTTATACCAACCCTGAT+TGG + tig0023210:10058-10077 Msa1406450:CDS 40.0%
TCAACATCAGTGTACTCCAT+TGG + tig0023210:10096-10115 Msa1406450:CDS 40.0%
GATGTGCATTCAGGAATAAC+AGG + tig0023210:10121-10140 Msa1406450:exon 40.0%
TGCATTCAGGAATAACAGGA+GGG + tig0023210:10125-10144 Msa1406450:three_prime_UTR 40.0%
! TAGTGTGGGTTTTTATGTCC+TGG + tig0023210:10236-10255 Msa1406450:three_prime_UTR 40.0%
! GCTTGACTCTGCTGTTTAAA+TGG + tig0023210:10281-10300 Msa1406450:three_prime_UTR 40.0%
! ATGACTTAGTTTGGCCAAAC+TGG + tig0023210:10352-10371 Msa1406450:three_prime_UTR 40.0%
! CAAGAGCTTGCTTTAACAGA+AGG - tig0023210:10382-10401 None:intergenic 40.0%
CTTCTGTTAAAGCAAGCTCT+TGG + tig0023210:10380-10399 Msa1406450:three_prime_UTR 40.0%
! GTGCTAAGAGCTTGCTTTAA+GGG - tig0023210:10446-10465 None:intergenic 40.0%
! TGTGCTAAGAGCTTGCTTTA+AGG - tig0023210:10447-10466 None:intergenic 40.0%
TTTCGGGAAGATGAAGAGGA+TGG - tig0023210:6738-6757 None:intergenic 45.0%
TTGTGAATGTGAGGGGTTTC+GGG - tig0023210:6754-6773 None:intergenic 45.0%
GAGGGATTTGTGAATGTGAG+GGG - tig0023210:6761-6780 None:intergenic 45.0%
AACACGGTCCACAATGGAAA+TGG - tig0023210:6806-6825 None:intergenic 45.0%
ACCGTTACCATTACCTGAAG+TGG - tig0023210:6881-6900 None:intergenic 45.0%
GACGAAATCAAACTCACCCT+TGG - tig0023210:6914-6933 None:intergenic 45.0%
! TTTGATTTCGTCCCGCATTC+TGG + tig0023210:6922-6941 Msa1406450:CDS 45.0%
! GGTTAAGACTCTGTTAGCCT+CGG + tig0023210:6966-6985 Msa1406450:CDS 45.0%
TATCTGGAGAATCATCCGGA+GGG - tig0023210:7341-7360 None:intergenic 45.0%
TGAAGTGCAGTATAGGACAG+CGG + tig0023210:7410-7429 Msa1406450:CDS 45.0%
ACAGCGGGGAAATACAAATC+TGG + tig0023210:7426-7445 Msa1406450:CDS 45.0%
TGAAGGATGGGAATCGATGA+AGG + tig0023210:7464-7483 Msa1406450:CDS 45.0%
GGAATCGATGAAGGCAGTTA+AGG + tig0023210:7473-7492 Msa1406450:CDS 45.0%
AGATTATCACGGGTCTCAGT+AGG + tig0023210:7646-7665 Msa1406450:CDS 45.0%
CTGTTGGTATGTCAAATGGC+AGG + tig0023210:7721-7740 Msa1406450:CDS 45.0%
GTTTGTGGATCCCACAATGA+AGG + tig0023210:7765-7784 Msa1406450:CDS 45.0%
GTTTGAAGGCTGTAATCCTC+CGG + tig0023210:7838-7857 Msa1406450:CDS 45.0%
GCCAACAAAAATTCTCCTCC+TGG - tig0023210:7873-7892 None:intergenic 45.0%
AAGAAGGAGGTTCTTCACAG+AGG + tig0023210:8095-8114 Msa1406450:CDS 45.0%
TCATGCCACATGAAGATGAG+CGG + tig0023210:8159-8178 Msa1406450:CDS 45.0%
ATGATCCGCTCATCTTCATG+TGG - tig0023210:8167-8186 None:intergenic 45.0%
GTTAATCAGTTAGCGCACTC+AGG - tig0023210:9367-9386 None:intergenic 45.0%
GGTGATATTGTCGACCTACA+TGG - tig0023210:9595-9614 None:intergenic 45.0%
!! GATGTATTTCTGTCGGCTTC+CGG + tig0023210:9908-9927 Msa1406450:intron 45.0%
TGGATGCTGTATGCCTTCAA+AGG + tig0023210:9983-10002 Msa1406450:CDS 45.0%
ACAACAAACTGGACAAAGCC+CGG + tig0023210:10029-10048 Msa1406450:CDS 45.0%
TACCAACCCTGATTGGAAGA+AGG + tig0023210:10065-10084 Msa1406450:CDS 45.0%
ACAGCTCCTTCTTCCAATCA+GGG - tig0023210:10074-10093 None:intergenic 45.0%
AACAGCTCCTTCTTCCAATC+AGG - tig0023210:10075-10094 None:intergenic 45.0%
CCTGAATGCACATCAACCAA+TGG - tig0023210:10115-10134 None:intergenic 45.0%
! CCATTGGTTGATGTGCATTC+AGG + tig0023210:10112-10131 Msa1406450:exon 45.0%
GTGCATTCAGGAATAACAGG+AGG + tig0023210:10124-10143 Msa1406450:three_prime_UTR 45.0%
TTCAGGAATAACAGGAGGGA+TGG + tig0023210:10129-10148 Msa1406450:three_prime_UTR 45.0%
TAACAGAAGGGAAGCCAGTT+TGG - tig0023210:10369-10388 None:intergenic 45.0%
! CTTTAAGGGAAGCCTAACAG+TGG - tig0023210:10432-10451 None:intergenic 45.0%
!! CTGGTATGCTTTGTTTGTCC+TGG + tig0023210:10647-10666 Msa1406450:three_prime_UTR 45.0%
!!! TCTTATAAATTTAATTTAAT+CGG - tig0023210:8542-8561 None:intergenic 5.0%
!! ACCAGTTGGCACTGACTCTA+AGG + tig0023210:7047-7066 Msa1406450:CDS 50.0%
ACCTTAGAGTCAGTGCCAAC+TGG - tig0023210:7051-7070 None:intergenic 50.0%
GGACACACGAGGATCAAATG+CGG - tig0023210:7112-7131 None:intergenic 50.0%
ATCTGGAGAATCATCCGGAG+GGG - tig0023210:7340-7359 None:intergenic 50.0%
GTATCTGGAGAATCATCCGG+AGG - tig0023210:7342-7361 None:intergenic 50.0%
GAAGTGCAGTATAGGACAGC+GGG + tig0023210:7411-7430 Msa1406450:CDS 50.0%
AAGTGCAGTATAGGACAGCG+GGG + tig0023210:7412-7431 Msa1406450:CDS 50.0%
CGATTCCCATCCTTCATCTG+TGG - tig0023210:7460-7479 None:intergenic 50.0%
ACGGGTCTCAGTAGGAGATT+TGG + tig0023210:7654-7673 Msa1406450:CDS 50.0%
ATTGAGATTATCCGTGGGGC+TGG + tig0023210:7804-7823 Msa1406450:CDS 50.0%
TTGAGATTATCCGTGGGGCT+GGG + tig0023210:7805-7824 Msa1406450:CDS 50.0%
!! TTTTTGATGACCCAGCCCCA+CGG - tig0023210:7818-7837 None:intergenic 50.0%
AAGGAGGTTCTTCACAGAGG+TGG + tig0023210:8098-8117 Msa1406450:CDS 50.0%
TGGTTGACGAGATTGCCCAA+GGG + tig0023210:8258-8277 Msa1406450:CDS 50.0%
CAAGCGCGTCAACCAACATA+TGG - tig0023210:8313-8332 None:intergenic 50.0%
! CATATGTTGGTTGACGCGCT+TGG + tig0023210:8311-8330 Msa1406450:CDS 50.0%
GGCACTAGCATCCAGAAAAG+GGG - tig0023210:8780-8799 None:intergenic 50.0%
CGGCACTAGCATCCAGAAAA+GGG - tig0023210:8781-8800 None:intergenic 50.0%
ACTTCAGTCCCCTGTGCTTA+AGG + tig0023210:9777-9796 Msa1406450:intron 50.0%
AACCTCTGCCTTAAGCACAG+GGG - tig0023210:9788-9807 None:intergenic 50.0%
GAACCTCTGCCTTAAGCACA+GGG - tig0023210:9789-9808 None:intergenic 50.0%
AGAACCTCTGCCTTAAGCAC+AGG - tig0023210:9790-9809 None:intergenic 50.0%
AACTGGACAAAGCCCGGAAA+TGG + tig0023210:10035-10054 Msa1406450:CDS 50.0%
ACTGGACAAAGCCCGGAAAT+GGG + tig0023210:10036-10055 Msa1406450:CDS 50.0%
CTCCTTCTTCCAATCAGGGT+TGG - tig0023210:10070-10089 None:intergenic 50.0%
ACAGGTTCACAGATAGCTCC+AGG - tig0023210:10668-10687 None:intergenic 50.0%
GGGGTTTCGGGAAGATGAAG+AGG - tig0023210:6742-6761 None:intergenic 55.0%
TGCTGCAACACGGTCCACAA+TGG - tig0023210:6812-6831 None:intergenic 55.0%
! TCTGTTAGCCTCGGAGCATG+TGG + tig0023210:6975-6994 Msa1406450:CDS 55.0%
TCCATGTTCCACATGCTCCG+AGG - tig0023210:6986-7005 None:intergenic 55.0%
GTCAGTGCCAACTGGTCCAT+CGG - tig0023210:7043-7062 None:intergenic 55.0%
AGAAACACAGCGGACACACG+AGG - tig0023210:7123-7142 None:intergenic 55.0%
! GAATCATCCGGAGGGGGTTT+TGG - tig0023210:7333-7352 None:intergenic 55.0%
TCTGGAGAATCATCCGGAGG+GGG - tig0023210:7339-7358 None:intergenic 55.0%
ATCCTCCGGATTGACAGTCC+AGG + tig0023210:7852-7871 Msa1406450:CDS 55.0%
CTCCTCCTGGACTGTCAATC+CGG - tig0023210:7860-7879 None:intergenic 55.0%
CTTTGTGGGCAAGGTAGCGA+CGG + tig0023210:8214-8233 Msa1406450:CDS 55.0%
GTGGTTGACGAGATTGCCCA+AGG + tig0023210:8257-8276 Msa1406450:CDS 55.0%
TTGACGAGATTGCCCAAGGG+CGG + tig0023210:8261-8280 Msa1406450:CDS 55.0%
! GGCGGCACTGAACCATATGT+TGG + tig0023210:8298-8317 Msa1406450:CDS 55.0%
! ATGTTGGTTGACGCGCTTGG+TGG + tig0023210:8314-8333 Msa1406450:CDS 55.0%
GCGGCACTAGCATCCAGAAA+AGG - tig0023210:8782-8801 None:intergenic 55.0%
TTTCTGGATGCTAGTGCCGC+TGG + tig0023210:8782-8801 Msa1406450:intron 55.0%
GCCTCGGAGCATGTGGAACA+TGG + tig0023210:6982-7001 Msa1406450:CDS 60.0%
TGCACCTCCAAAACCCCCTC+CGG + tig0023210:7323-7342 Msa1406450:CDS 60.0%
!! TCATCCGGAGGGGGTTTTGG+AGG - tig0023210:7330-7349 None:intergenic 60.0%
CTCCTGGACTGTCAATCCGG+AGG - tig0023210:7857-7876 None:intergenic 60.0%
CTCCGGATTGACAGTCCAGG+AGG + tig0023210:7855-7874 Msa1406450:CDS 60.0%
AGATTGCCCAAGGGCGGCTT+TGG + tig0023210:8267-8286 Msa1406450:CDS 60.0%
ATGGTTCAGTGCCGCCTTCC+CGG - tig0023210:8294-8313 None:intergenic 60.0%
GTCCCCTGTGCTTAAGGCAG+AGG + tig0023210:9783-9802 Msa1406450:intron 60.0%
!! GCCCAAGGGCGGCTTTGGAC+CGG + tig0023210:8272-8291 Msa1406450:CDS 70.0%
CCCGGTCCAAAGCCGCCCTT+GGG - tig0023210:8276-8295 None:intergenic 70.0%
!! CCCAAGGGCGGCTTTGGACC+GGG + tig0023210:8273-8292 Msa1406450:CDS 70.0%
TCCCGGTCCAAAGCCGCCCT+TGG - tig0023210:8277-8296 None:intergenic 70.0%
!! AGGGCGGCTTTGGACCGGGA+AGG + tig0023210:8277-8296 Msa1406450:CDS 70.0%
!! GCGGCTTTGGACCGGGAAGG+CGG + tig0023210:8280-8299 Msa1406450:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0023210 gene 6670 10709 6670 ID=Msa1406450;Name=Msa1406450
tig0023210 mRNA 6670 10709 6670 ID=Msa1406450-mRNA-1;Parent=Msa1406450;Name=Msa1406450-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0.5|1|1|1|2|587|629
tig0023210 exon 6670 8417 6670 ID=Msa1406450-mRNA-1:exon:24609;Parent=Msa1406450-mRNA-1
tig0023210 exon 9981 10709 9981 ID=Msa1406450-mRNA-1:exon:24610;Parent=Msa1406450-mRNA-1
tig0023210 CDS 6670 8417 6670 ID=Msa1406450-mRNA-1:cds;Parent=Msa1406450-mRNA-1
tig0023210 CDS 9981 10122 9981 ID=Msa1406450-mRNA-1:cds;Parent=Msa1406450-mRNA-1
tig0023210 three_prime_UTR 10123 10709 10123 ID=Msa1406450-mRNA-1:three_prime_utr;Parent=Msa1406450-mRNA-1
Gene Sequence

>Msa1406450

ATGCTTCGTTACATGTACAGAAAAGCATCACAATCATCCTTCATCTTCATCTCAAACAACTTACGCCATCCTCTTCATCTTCCCGAAACCCCTCACATTCACAAATCCCTCAAATTCTACCGCACACTATCTTCCATTTCCATTGTGGACCGTGTTGCAGCATCTTTACTTCCTACTCAAGAACCAACGTTAGTGTTTTCATCTTCTTCCACTTCAGGTAATGGTAACGGTGTTGATTTTCCCAAGGGTGAGTTTGATTTCGTCCCGCATTCTGGCTTCAAGAAATTTATTGTGAAGGTTAAGACTCTGTTAGCCTCGGAGCATGTGGAACATGGAAGTATATTGAGAATCAATTTACAAGGAAATATTTCCGATGGACCAGTTGGCACTGACTCTAAGGTATTGTCTTTACCTCAGCTAAGTGAAAACCTTATGAAAGCCGCATTTGATCCTCGTGTGTCCGCTGTGTTTCTTAATATAGTTGATTTTTATTGTGGTTGGGCTAAATGTGATGAAATTAGAAGACAAATATCAAATTTTAAAAAATCTGGTAAAAAGGTTATAGCTTTTATGGCTTCATTTTGGAGTTTTGAGCCTGTATTATGGTGTGAAGATAGATCATATTACATAGCTAGTGTATGTGATGAAATATATGCACCTCCAAAACCCCCTCCGGATGATTCTCCAGATACAAGTATTGATAGCCCTGTGAACACGGATTGTATTTATTACAATCTTGTTGAAGTGCAGTATAGGACAGCGGGGAAATACAAATCTGGACATTTAACCACAGATGAAGGATGGGAATCGATGAAGGCAGTTAAGGATGATATAAGATGTAACTGGCTTGTTATGGTTTCTTCTTCAAGGAAAATAAGAGAAGAGGAGATTCTAACTTTTTTTGGTAGTGAGGATTGTCGTGAAGTAGAAAATTGGATAGATTGTAGGTTACTTTCAGGGTTGATGGCTAGTGATAAGATTATCACGGGTCTCAGTAGGAGATTTGGACCACTGCTCGATTTCAAAGCATATTCACAAGTTAAAAAATGCACTGTTGGTATGTCAAATGGCAGGGAAAAGATCGGTGTTATTAGAGTTTGTGGATCCCACAATGAAGGTGCAATTCATGATTTGATTGAGATTATCCGTGGGGCTGGGTCATCAAAAAGTTTGAAGGCTGTAATCCTCCGGATTGACAGTCCAGGAGGAGAATTTTTGTTGGCTGATCAATTATGGAGAGAAGTCAACATTCTTGCTTCAAAGATACCAGTCGTTTCTTCATTATCAGACAAGGCAACTAGTGGTGCATATTTGATTGCAACTGGAGCAGGAACAATTGTTGCTGAGAAACTCACTTATACATGTCAAATTGGAGCGATAAACTCATTTCCAAACACTGAGAAGTTATACAAATACATTGGTTTTAAGAAGGAGGTTCTTCACAGAGGTGGTAAATATGCAGAATTATTTGAGGCTGATCATCGGCCAATCATGCCACATGAAGATGAGCGGATCATAAATGGGTTAGAAGAAGTTTACAAAGTCTTTGTGGGCAAGGTAGCGACGGCCAGATCGTTAAGTGTAGATGTGGTTGACGAGATTGCCCAAGGGCGGCTTTGGACCGGGAAGGCGGCACTGAACCATATGTTGGTTGACGCGCTTGGTGGTTTTTCACGCGCTGTTGCTATAGCCAAATTGAAGGCTAATATACCTCAAAATAGACCTATTAATCTGGTTGAACTCTCTGCTCTGGATGCTGTATGCCTTCAAAGGACTGTTGTTTTACTTATCAGAACACAACAAACTGGACAAAGCCCGGAAATGGGTACTTATACCAACCCTGATTGGAAGAAGGAGCTGTTGTCAACATCAGTGTACTCCATTGGTTGA
Protein sequence

>Msa1406450

MLRYMYRKASQSSFIFISNNLRHPLHLPETPHIHKSLKFYRTLSSISIVDRVAASLLPTQEPTLVFSSSSTSGNGNGVDFPKGEFDFVPHSGFKKFIVKVKTLLASEHVEHGSILRINLQGNISDGPVGTDSKVLSLPQLSENLMKAAFDPRVSAVFLNIVDFYCGWAKCDEIRRQISNFKKSGKKVIAFMASFWSFEPVLWCEDRSYYIASVCDEIYAPPKPPPDDSPDTSIDSPVNTDCIYYNLVEVQYRTAGKYKSGHLTTDEGWESMKAVKDDIRCNWLVMVSSSRKIREEEILTFFGSEDCREVENWIDCRLLSGLMASDKIITGLSRRFGPLLDFKAYSQVKKCTVGMSNGREKIGVIRVCGSHNEGAIHDLIEIIRGAGSSKSLKAVILRIDSPGGEFLLADQLWREVNILASKIPVVSSLSDKATSGAYLIATGAGTIVAEKLTYTCQIGAINSFPNTEKLYKYIGFKKEVLHRGGKYAELFEADHRPIMPHEDERIINGLEEVYKVFVGKVATARSLSVDVVDEIAQGRLWTGKAALNHMLVDALGGFSRAVAIAKLKANIPQNRPINLVELSALDAVCLQRTVVLLIRTQQTGQSPEMGTYTNPDWKKELLSTSVYSIG*