AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1416540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416540 MtrunA17_Chr4g0061881 44.815 540 249 13 75 582 67 589 5.25e-136 413
Msa1416540 MtrunA17_Chr2g0307851 41.996 531 270 9 79 583 84 602 4.58e-127 390
Msa1416540 MtrunA17_Chr4g0069071 39.894 376 206 6 130 494 5 371 6.08e-75 244
Msa1416540 MtrunA17_Chr4g0073611 35.197 304 160 8 149 445 2 275 1.18e-46 166
Msa1416540 MtrunA17_Chr5g0408331 31.856 361 159 12 76 429 32 312 2.88e-40 149
Msa1416540 MtrunA17_Chr4g0061841 33.007 306 112 7 148 442 8 231 5.30e-37 138
Msa1416540 MtrunA17_Chr4g0076561 37.255 204 100 3 337 539 10 186 2.74e-35 131
Msa1416540 MtrunA17_Chr5g0437391 30.460 348 179 9 210 553 12 300 7.91e-35 135
Msa1416540 MtrunA17_Chr8g0344851 41.885 191 95 6 411 594 1 182 2.10e-34 129
Msa1416540 MtrunA17_Chr4g0061831 52.294 109 51 1 473 581 9 116 2.18e-32 121
Msa1416540 MtrunA17_Chr4g0064001 43.537 147 68 3 436 582 4 135 1.63e-25 105
Msa1416540 MtrunA17_Chr8g0344821 44.444 99 53 1 484 582 11 107 2.60e-21 89.7
Msa1416540 MtrunA17_Chr4g0076571 55.128 78 26 1 144 221 1 69 5.02e-21 88.2
Msa1416540 MtrunA17_Chr5g0437441 52.222 90 37 3 107 193 7 93 1.56e-20 87.0
Msa1416540 MtrunA17_Chr8g0344831 43.750 112 58 2 326 432 7 118 1.71e-18 82.0
Msa1416540 MtrunA17_Chr4g0069081 47.500 80 42 0 506 585 1 80 1.21e-16 76.3
Msa1416540 MtrunA17_Chr5g0437451 35.507 138 68 4 443 578 30 148 1.72e-16 77.4
Msa1416540 MtrunA17_Chr4g0073621 61.017 59 21 1 526 582 1 59 3.31e-16 73.9
Msa1416540 MtrunA17_Chr5g0408341 63.462 52 19 0 531 582 1 52 2.92e-14 70.5
Msa1416540 MtrunA17_Chr4g0063991 49.254 67 33 1 338 403 1 67 1.50e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416540 AT1G73990.1 38.644 590 319 13 22 582 32 607 7.71e-120 372
Msa1416540 AT1G73990.2 37.657 478 260 9 79 530 90 555 6.75e-94 302

Find 176 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATTTCGTCCCGCATTC+TGG 0.209844 tig0024372:+14414 Msa1416540:CDS
GAAGATGAGCGGATCATAAA+TGG 0.215556 tig0024372:+15662 Msa1416540:CDS
TGTGCTAAGAGCTTGCTTTA+AGG 0.216377 tig0024372:-18202 None:intergenic
GCTTGACTCTGCTGTTTAAA+TGG 0.219189 tig0024372:+18039 Msa1416540:three_prime_UTR
ATAGATTGTAAGTTACTTTC+AGG 0.238367 tig0024372:+15098 Msa1416540:CDS
GATAGGCAAAATCACATTAT+AGG 0.245255 tig0024372:-18345 None:intergenic
TTGTGAATGTGAGGGGTTTC+GGG 0.245290 tig0024372:-14243 None:intergenic
TTTGTGAATGTGAGGGGTTT+CGG 0.257624 tig0024372:-14244 None:intergenic
TATTAGCATGTAGATGATTT+AGG 0.257669 tig0024372:+17945 Msa1416540:three_prime_UTR
TTGGTATAAGTACCCATTTC+GGG 0.263338 tig0024372:-17806 None:intergenic
CTCACTTATACATGTCAAAT+TGG 0.274908 tig0024372:+15512 Msa1416540:CDS
CCATTGGTTGATGTGCATTC+AGG 0.286389 tig0024372:+17870 Msa1416540:CDS
GAGAGTTCAACCAGATTAAT+AGG 0.304701 tig0024372:-15884 None:intergenic
AACAGCTCCTTCTTCCAATC+AGG 0.317463 tig0024372:-17830 None:intergenic
AGATTGCCCAAGGGCGGCTT+TGG 0.320112 tig0024372:+15759 Msa1416540:CDS
TACTTAGACATGACTTAGTT+TGG 0.326609 tig0024372:+18101 Msa1416540:three_prime_UTR
ATGGTTTAGTGCCGCCTTCC+CGG 0.326877 tig0024372:-15783 None:intergenic
ATGACTTAGTTTGGCCAAAC+TGG 0.336189 tig0024372:+18110 Msa1416540:three_prime_UTR
TTGTATAACTTCTCAGTGTT+TGG 0.338375 tig0024372:-15551 None:intergenic
AGGTATATTAGCCTTCAATT+TGG 0.345021 tig0024372:-15852 None:intergenic
CATCACTGTTCAAATTTGAT+AGG 0.347256 tig0024372:-18362 None:intergenic
GGGCTATCAATACTTGTATC+TGG 0.347744 tig0024372:-14846 None:intergenic
TAAGTTACTTTCAGGGTTGA+TGG 0.351095 tig0024372:+15106 Msa1416540:CDS
GTGCTAAGAGCTTGCTTTAA+GGG 0.353149 tig0024372:-18201 None:intergenic
TAACAGAAGGGAAGCCAGTT+TGG 0.364170 tig0024372:-18124 None:intergenic
ACCAGTTGGCACTGACTCTA+AGG 0.365682 tig0024372:+14539 Msa1416540:CDS
TGTAGATGATTTAGGCCATT+TGG 0.369425 tig0024372:+17953 Msa1416540:three_prime_UTR
TCCCGGTCCAAAGCCGCCCT+TGG 0.369925 tig0024372:-15766 None:intergenic
TTGTTATGGTTTCTTCTTCA+AGG 0.372590 tig0024372:+15009 Msa1416540:CDS
ATTGAGATTATCCGTGGGGC+TGG 0.376386 tig0024372:+15296 Msa1416540:CDS
ATCGGTGTTATTAGAGTTTG+TGG 0.378619 tig0024372:+15242 Msa1416540:CDS
CTGGTATGATTTGTTTGTCC+TGG 0.379188 tig0024372:+18405 Msa1416540:three_prime_UTR
AAGATGTAACTGGCTTGTTA+TGG 0.382012 tig0024372:+14995 Msa1416540:CDS
TCTTCTTCCACTTCAGGTAA+TGG 0.382352 tig0024372:+14363 Msa1416540:CDS
ATTGTCGTGAAGTAGAAAAT+TGG 0.383838 tig0024372:+15075 Msa1416540:CDS
TCATCTTCATGTGGCATGAT+TGG 0.388034 tig0024372:-15647 None:intergenic
ACGGGTCTCAGTAGGAGATT+TGG 0.389865 tig0024372:+15146 Msa1416540:CDS
GCCCAAGGGCGGCTTTGGAC+CGG 0.392493 tig0024372:+15764 Msa1416540:CDS
TCAAAATAGACCTATTAATC+TGG 0.409814 tig0024372:+15874 Msa1416540:CDS
AAACTGGACAAAGCCCGAAA+TGG 0.415642 tig0024372:+17793 Msa1416540:CDS
GTTGGTATAAGTACCCATTT+CGG 0.416903 tig0024372:-17807 None:intergenic
CTTATCAGAACACAACAAAC+TGG 0.418408 tig0024372:+17777 Msa1416540:CDS
CTCCTCCTGGACTGTCAATC+CGG 0.422871 tig0024372:-15349 None:intergenic
ATGAATTGCACTTTCATTGT+GGG 0.423524 tig0024372:-15267 None:intergenic
AAGTAAAGATCGATGACAAT+AGG 0.426110 tig0024372:-18083 None:intergenic
CCCAAGGGCGGCTTTGGACC+GGG 0.429403 tig0024372:+15765 Msa1416540:CDS
TATGTTTGTGCATTATTGTC+TGG 0.433909 tig0024372:+18386 Msa1416540:three_prime_UTR
GATGTGCATTCAGGAATAAC+AGG 0.437794 tig0024372:+17879 Msa1416540:CDS
GGTGCATATTTGATTGCAAC+TGG 0.441687 tig0024372:+15464 Msa1416540:CDS
CCCGGTCCAAAGCCGCCCTT+GGG 0.444189 tig0024372:-15765 None:intergenic
GTAAAACAACAGTCCTTTGA+AGG 0.445649 tig0024372:-17755 None:intergenic
GAAGTTTACAAAGTCTTTGT+GGG 0.446335 tig0024372:+15692 Msa1416540:CDS
AACTGGACAAAGCCCGAAAT+GGG 0.447850 tig0024372:+17794 Msa1416540:CDS
GATCAAATGCGGCTTTCATA+AGG 0.449687 tig0024372:-14590 None:intergenic
GGAATCGATGAAGGCAGTTA+AGG 0.451737 tig0024372:+14965 Msa1416540:CDS
TATTTGATTGCAACTGGAGC+AGG 0.455192 tig0024372:+15470 Msa1416540:CDS
AACACGGTCCACAATGGAAA+TGG 0.473603 tig0024372:-14295 None:intergenic
TAAATACAATCCGTGTTCAC+AGG 0.476299 tig0024372:-14867 None:intergenic
TAGTGTGCGGTAGAATTTGA+GGG 0.478545 tig0024372:-14268 None:intergenic
CACATCTACACTTAACGATC+TGG 0.479653 tig0024372:-15729 None:intergenic
GACGAAATCAAACTCACCCT+TGG 0.479725 tig0024372:-14403 None:intergenic
ACCTTAGAGTCAGTGCCAAC+TGG 0.479839 tig0024372:-14540 None:intergenic
TAGATTGTAAGTTACTTTCA+GGG 0.480160 tig0024372:+15099 Msa1416540:CDS
AGAAGTTTACAAAGTCTTTG+TGG 0.483301 tig0024372:+15691 Msa1416540:CDS
ACCGTTACCATTACCTGAAG+TGG 0.483377 tig0024372:-14370 None:intergenic
TTGAGATTATCCGTGGGGCT+GGG 0.490077 tig0024372:+15297 Msa1416540:CDS
CTTCAAGAAATTTATTGTGA+AGG 0.493765 tig0024372:+14437 Msa1416540:CDS
CATGAATTGCACTTTCATTG+TGG 0.495107 tig0024372:-15268 None:intergenic
CTATCTTCACACCATAATAC+AGG 0.496409 tig0024372:-14756 None:intergenic
ATCTTGTTGAAGTGCAGTAT+AGG 0.498853 tig0024372:+14895 Msa1416540:CDS
AACTAGCATATAAAACCAAA+TGG 0.499171 tig0024372:-17968 None:intergenic
GTACTTATACCAACCCTGAT+TGG 0.505029 tig0024372:+17816 Msa1416540:CDS
CTTCTGTTAAAGCAAGCTCT+TGG 0.507466 tig0024372:+18138 Msa1416540:three_prime_UTR
ATAGTGTGCGGTAGAATTTG+AGG 0.507587 tig0024372:-14269 None:intergenic
CTTGTATCTGGAGAATCATC+CGG 0.508155 tig0024372:-14834 None:intergenic
AGGATGATATAAGATGTAAC+TGG 0.510806 tig0024372:+14985 Msa1416540:CDS
GAAGTGCAGTATAGGACAGC+GGG 0.512732 tig0024372:+14903 Msa1416540:CDS
TGTTGCTATAGCCAAATTGA+AGG 0.514181 tig0024372:+15841 Msa1416540:CDS
ACAGCGGGGAAATACAAATC+TGG 0.516542 tig0024372:+14918 Msa1416540:CDS
CAAGAGCTTGCTTTAACAGA+AGG 0.519724 tig0024372:-18137 None:intergenic
CAAGCGCGTCAACCAACATA+TGG 0.522040 tig0024372:-15802 None:intergenic
ATGTTGGTTGACGCGCTTGG+TGG 0.522308 tig0024372:+15806 Msa1416540:CDS
CGTTTCTTCATTATCAGACA+AGG 0.522976 tig0024372:+15433 Msa1416540:CDS
TGCACTGTTGGTATGTCAAA+TGG 0.523328 tig0024372:+15209 Msa1416540:CDS
CTCCTTCTTCCAATCAGGGT+TGG 0.525262 tig0024372:-17825 None:intergenic
ATTTCTTGAAGCCAGAATGC+GGG 0.525455 tig0024372:-14425 None:intergenic
TCAACATCAGTGTACTCCAT+TGG 0.529318 tig0024372:+17854 Msa1416540:CDS
ACGAAATCAAACTCACCCTT+GGG 0.529474 tig0024372:-14402 None:intergenic
GTTTGAAGGCTGTAATCCTC+CGG 0.530693 tig0024372:+15330 Msa1416540:CDS
TTACAAGGAAATATTTCCGA+TGG 0.530898 tig0024372:+14516 Msa1416540:CDS
TTACAAAGTCTTTGTGGGCA+AGG 0.531876 tig0024372:+15697 Msa1416540:CDS
AAGATGAGCGGATCATAAAT+GGG 0.535057 tig0024372:+15663 Msa1416540:CDS
TAAATATGCAGAATTATTTG+AGG 0.535075 tig0024372:+15613 Msa1416540:CDS
GTCAGTGCCAACTGGTCCAT+CGG 0.538824 tig0024372:-14532 None:intergenic
TGAAGGATGGGAATCGATGA+AGG 0.539636 tig0024372:+14956 Msa1416540:CDS
GGACATTTAACCACAGATGA+AGG 0.540268 tig0024372:+14939 Msa1416540:CDS
ACTATCTTCCATTTCCATTG+TGG 0.545148 tig0024372:+14287 Msa1416540:CDS
GTTGTTTGAGATGAAGATGA+AGG 0.549690 tig0024372:-14199 None:intergenic
GCCTCGGAGCATGTGGAACA+TGG 0.549933 tig0024372:+14474 Msa1416540:CDS
CTCAAAACAGTATCAAATCC+AGG 0.550202 tig0024372:-18012 None:intergenic
AGATTATCACGGGTCTCAGT+AGG 0.550801 tig0024372:+15138 Msa1416540:CDS
GCGGCTTTGGACCGGGAAGG+CGG 0.553063 tig0024372:+15772 Msa1416540:CDS
ACTAACGTTGGTTCTTGAGT+AGG 0.554396 tig0024372:-14333 None:intergenic
TTCAAGGAAAATAAGAGAAG+AGG 0.555199 tig0024372:+15025 Msa1416540:CDS
AGGGCGGCTTTGGACCGGGA+AGG 0.558400 tig0024372:+15769 Msa1416540:CDS
GATTTGATTGAGATTATCCG+TGG 0.559731 tig0024372:+15290 Msa1416540:CDS
CTGTTGGTATGTCAAATGGC+AGG 0.562620 tig0024372:+15213 Msa1416540:CDS
TCCACTTCAGGTAATGGTAA+CGG 0.563991 tig0024372:+14369 Msa1416540:CDS
TCTGTTAGCCTCGGAGCATG+TGG 0.564327 tig0024372:+14467 Msa1416540:CDS
ACAGGTTCACAGATAGCTCC+AGG 0.568791 tig0024372:-18423 None:intergenic
TCTGATAATGAAGAAACGAC+TGG 0.568882 tig0024372:-15428 None:intergenic
ATTTAACCACAGATGAAGGA+TGG 0.568911 tig0024372:+14943 Msa1416540:CDS
GAGAAGTTATACAAATACAT+TGG 0.571158 tig0024372:+15560 Msa1416540:CDS
ATAACACAGTTCAAAACTGA+TGG 0.572477 tig0024372:-18289 None:intergenic
TACCAACCCTGATTGGAAGA+AGG 0.572792 tig0024372:+17823 Msa1416540:CDS
GGGGTTTCGGGAAGATGAAG+AGG 0.574598 tig0024372:-14231 None:intergenic
AAATACAATCCGTGTTCACA+GGG 0.575360 tig0024372:-14866 None:intergenic
ATTACTAATGTAGAGAGTGA+AGG 0.576126 tig0024372:-18239 None:intergenic
TTCAGGAATAACAGGAGGGA+TGG 0.577523 tig0024372:+17887 Msa1416540:CDS
ATATTGAGAATCAATTTACA+AGG 0.578147 tig0024372:+14501 Msa1416540:CDS
TGAGGGATTTGTGAATGTGA+GGG 0.580001 tig0024372:-14251 None:intergenic
GCTAGTGATAAGATTATCAC+GGG 0.582665 tig0024372:+15128 Msa1416540:CDS
ACAGCTCCTTCTTCCAATCA+GGG 0.583747 tig0024372:-17829 None:intergenic
GTGGTTGACGAGATTGCCCA+AGG 0.585641 tig0024372:+15749 Msa1416540:CDS
AATTATTTGAGGCTGATCAT+CGG 0.586001 tig0024372:+15624 Msa1416540:CDS
TTGACGAGATTGCCCAAGGG+CGG 0.586860 tig0024372:+15753 Msa1416540:CDS
ATCCTCCGGATTGACAGTCC+AGG 0.587117 tig0024372:+15344 Msa1416540:CDS
TATTGATAGCCCTGTGAACA+CGG 0.587964 tig0024372:+14857 Msa1416540:CDS
CTTTGTGGGCAAGGTAGCGA+TGG 0.589923 tig0024372:+15706 Msa1416540:CDS
AAGAGCTTGCTTTAACAGAA+GGG 0.590552 tig0024372:-18136 None:intergenic
TGGATGTTGTATGCCTTCAA+AGG 0.592887 tig0024372:+17742 Msa1416540:CDS
CGATTCCCATCCTTCATCTG+TGG 0.594942 tig0024372:-14949 None:intergenic
GGCGGCACTAAACCATATGT+TGG 0.595197 tig0024372:+15790 Msa1416540:CDS
GGCTAGTGATAAGATTATCA+CGG 0.596190 tig0024372:+15127 Msa1416540:CDS
GGTTAAGACTCTGTTAGCCT+CGG 0.596334 tig0024372:+14458 Msa1416540:CDS
AATATTTCCGATGGACCAGT+TGG 0.597583 tig0024372:+14525 Msa1416540:CDS
TCTGGAGAATCATCCGGAGG+GGG 0.598601 tig0024372:-14828 None:intergenic
CATATGTTGGTTGACGCGCT+TGG 0.602640 tig0024372:+15803 Msa1416540:CDS
TTTAACCACAGATGAAGGAT+GGG 0.605296 tig0024372:+14944 Msa1416540:CDS
TTGAGGGATTTGTGAATGTG+AGG 0.606072 tig0024372:-14252 None:intergenic
GAGGGATTTGTGAATGTGAG+GGG 0.607039 tig0024372:-14250 None:intergenic
CTCCTGGACTGTCAATCCGG+AGG 0.612922 tig0024372:-15346 None:intergenic
TGTTGGTATGTCAAATGGCA+GGG 0.616785 tig0024372:+15214 Msa1416540:CDS
AATTTCTTGAAGCCAGAATG+CGG 0.621440 tig0024372:-14426 None:intergenic
TTCAAAAGTTGACAGAGTGA+AGG 0.622058 tig0024372:-18322 None:intergenic
TGCTGCAACACGGTCCACAA+TGG 0.622831 tig0024372:-14301 None:intergenic
TATCTGGAGAATCATCCGGA+GGG 0.623341 tig0024372:-14830 None:intergenic
TCAAATGGCAGGGAAAAGAT+CGG 0.628546 tig0024372:+15224 Msa1416540:CDS
AAGGAGGTTCTTCACAGAGG+TGG 0.630578 tig0024372:+15590 Msa1416540:CDS
GAAGATGAAAACACTAACGT+TGG 0.631994 tig0024372:-14345 None:intergenic
ATGATCCGCTCATCTTCATG+TGG 0.633308 tig0024372:-15656 None:intergenic
ATCTGGAGAATCATCCGGAG+GGG 0.638622 tig0024372:-14829 None:intergenic
TTATCAGACAAGGCAACTAG+TGG 0.639169 tig0024372:+15443 Msa1416540:CDS
GTGCATTCAGGAATAACAGG+AGG 0.649237 tig0024372:+17882 Msa1416540:CDS
CCTGAATGCACATCAACCAA+TGG 0.649333 tig0024372:-17870 None:intergenic
ATAATAAACTCAACTCACAC+AGG 0.658801 tig0024372:-18441 None:intergenic
CAGATCGTTAAGTGTAGATG+TGG 0.659544 tig0024372:+15730 Msa1416540:CDS
GTATCTGGAGAATCATCCGG+AGG 0.659830 tig0024372:-14831 None:intergenic
ATTTGATTGAGATTATCCGT+GGG 0.666741 tig0024372:+15291 Msa1416540:CDS
AGAAACACAGCGGACACACG+AGG 0.667158 tig0024372:-14612 None:intergenic
TGCATTCAGGAATAACAGGA+GGG 0.668569 tig0024372:+17883 Msa1416540:CDS
TTTCGGGAAGATGAAGAGGA+TGG 0.668798 tig0024372:-14227 None:intergenic
TCATGCCACATGAAGATGAG+CGG 0.671782 tig0024372:+15651 Msa1416540:CDS
AAGAAGGAGGTTCTTCACAG+AGG 0.681303 tig0024372:+15587 Msa1416540:CDS
CTCCGGATTGACAGTCCAGG+AGG 0.681617 tig0024372:+15347 Msa1416540:CDS
TGGTTGACGAGATTGCCCAA+GGG 0.693802 tig0024372:+15750 Msa1416540:CDS
GAAGTAAAGATGCTGCAACA+CGG 0.695209 tig0024372:-14311 None:intergenic
TCCATGTTCCACATGCTCCG+AGG 0.700945 tig0024372:-14475 None:intergenic
CTTTAAGGGAAGCCTAACAG+TGG 0.711846 tig0024372:-18187 None:intergenic
TATGCTTTGAAATCGAGCAG+TGG 0.712517 tig0024372:-15170 None:intergenic
TGGAAATGGAAGATAGTGTG+CGG 0.715103 tig0024372:-14281 None:intergenic
TGAAGTGCAGTATAGGACAG+CGG 0.718438 tig0024372:+14902 Msa1416540:CDS
AACTATGTTAAGAAACACAG+CGG 0.736652 tig0024372:-14622 None:intergenic
AAGTGCAGTATAGGACAGCG+GGG 0.749747 tig0024372:+14904 Msa1416540:CDS
TTTGATTGAGATTATCCGTG+GGG 0.755479 tig0024372:+15292 Msa1416540:CDS
GGACACACGAGGATCAAATG+CGG 0.763717 tig0024372:-14601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCAAATTTTAAAAAATC+TGG + tig0024372:14690-14709 Msa1416540:CDS 10.0%
!!! TTTTAAAAAATCTGGTAAAA+AGG + tig0024372:14698-14717 Msa1416540:CDS 15.0%
!! ATATTGAGAATCAATTTACA+AGG + tig0024372:14501-14520 Msa1416540:CDS 20.0%
!!! AACATAGTTGATTTTTATTG+TGG + tig0024372:14636-14655 Msa1416540:CDS 20.0%
!!! TAAAAAGGTTATAGCTTTTA+TGG + tig0024372:14713-14732 Msa1416540:CDS 20.0%
!! TAAATATGCAGAATTATTTG+AGG + tig0024372:15613-15632 Msa1416540:CDS 20.0%
!!! ACTATTTTTCTTTCTTTTAC+TGG + tig0024372:15940-15959 Msa1416540:intron 20.0%
!! GAAAAAAACCTTACAAAATT+GGG - tig0024372:16074-16093 None:intergenic 20.0%
!! AGAAAAAAACCTTACAAAAT+TGG - tig0024372:16075-16094 None:intergenic 20.0%
!!! TTTGTAAGGTTTTTTTCTTT+TGG + tig0024372:16077-16096 Msa1416540:intron 20.0%
!! AATTTAATATTCTTCCTTCA+AGG + tig0024372:16423-16442 Msa1416540:intron 20.0%
!!! TTTTTAAAGTAATTAGCGTA+TGG - tig0024372:16740-16759 None:intergenic 20.0%
!! AAAAACATAGAATTCAAAAC+AGG - tig0024372:16975-16994 None:intergenic 20.0%
!!! AATTTTCTAAAATCAAGGAA+TGG - tig0024372:17369-17388 None:intergenic 20.0%
!!! ATTCCTTGATTTTAGAAAAT+TGG + tig0024372:17368-17387 Msa1416540:intron 20.0%
!!! AATTTTCTAAAATCAAGGAA+TGG - tig0024372:17369-17388 None:intergenic 20.0%
!!! ATTCCTTGATTTTAGAAAAT+TGG + tig0024372:17368-17387 Msa1416540:intron 20.0%
!!! GTTTGTAAATTTTAGACTTA+TGG + tig0024372:17689-17708 Msa1416540:intron 20.0%
! CTTCAAGAAATTTATTGTGA+AGG + tig0024372:14437-14456 Msa1416540:CDS 25.0%
!!! TAGTTGATTTTTATTGTGGT+TGG + tig0024372:14640-14659 Msa1416540:CDS 25.0%
!!! AGTTGATTTTTATTGTGGTT+GGG + tig0024372:14641-14660 Msa1416540:CDS 25.0%
!! ATAGATTGTAAGTTACTTTC+AGG + tig0024372:15098-15117 Msa1416540:CDS 25.0%
!! TAGATTGTAAGTTACTTTCA+GGG + tig0024372:15099-15118 Msa1416540:CDS 25.0%
! GAGAAGTTATACAAATACAT+TGG + tig0024372:15560-15579 Msa1416540:CDS 25.0%
!!! CAAATACATTGGTTTTAAGA+AGG + tig0024372:15571-15590 Msa1416540:CDS 25.0%
!! AGATTAATAGGTCTATTTTG+AGG - tig0024372:15875-15894 None:intergenic 25.0%
! TCAAAATAGACCTATTAATC+TGG + tig0024372:15874-15893 Msa1416540:CDS 25.0%
!!! TATGTTTTTTTGCTGAAAAG+TGG + tig0024372:15981-16000 Msa1416540:intron 25.0%
!!! AACTTTTTCCCAATTTTGTA+AGG + tig0024372:16063-16082 Msa1416540:intron 25.0%
!! GACTTTTAAATTGGATAGTT+TGG + tig0024372:16106-16125 Msa1416540:intron 25.0%
! GGGAAAAAACAAACAAAAAA+GGG - tig0024372:16252-16271 None:intergenic 25.0%
!!! ATTTTCTCTGAGAACTAAAA+AGG + tig0024372:16533-16552 Msa1416540:intron 25.0%
! TGAAATAACACTATAATGAC+CGG - tig0024372:16923-16942 None:intergenic 25.0%
!!! TTACCAGTAATTTTTTTGCT+AGG + tig0024372:17314-17333 Msa1416540:intron 25.0%
! AATCCTAGCAAAAAAATTAC+TGG - tig0024372:17320-17339 None:intergenic 25.0%
!!! AGTAATTTTTTTGCTAGGAT+TGG + tig0024372:17319-17338 Msa1416540:intron 25.0%
!!! GAACCAATTTTCTAAAATCA+AGG - tig0024372:17374-17393 None:intergenic 25.0%
!!! TTACCAGTAATTTTTTTGCT+AGG + tig0024372:17314-17333 Msa1416540:intron 25.0%
! AATCCTAGCAAAAAAATTAC+TGG - tig0024372:17320-17339 None:intergenic 25.0%
!!! AGTAATTTTTTTGCTAGGAT+TGG + tig0024372:17319-17338 Msa1416540:intron 25.0%
!!! GAACCAATTTTCTAAAATCA+AGG - tig0024372:17374-17393 None:intergenic 25.0%
! AAAATTTACAAACCAGAAAC+CGG - tig0024372:17682-17701 None:intergenic 25.0%
! TGCAGAAAAAAGAAAACAAA+TGG - tig0024372:17719-17738 None:intergenic 25.0%
! TATTAGCATGTAGATGATTT+AGG + tig0024372:17945-17964 Msa1416540:three_prime_UTR 25.0%
! AACTAGCATATAAAACCAAA+TGG - tig0024372:17971-17990 None:intergenic 25.0%
!!! TATATGCTAGTTTTTTAGTG+TGG + tig0024372:17979-17998 Msa1416540:three_prime_UTR 25.0%
!!! ATATGCTAGTTTTTTAGTGT+GGG + tig0024372:17980-17999 Msa1416540:three_prime_UTR 25.0%
TTACAAGGAAATATTTCCGA+TGG + tig0024372:14516-14535 Msa1416540:CDS 30.0%
AACTATGTTAAGAAACACAG+CGG - tig0024372:14625-14644 None:intergenic 30.0%
! TAGCTTTTATGGCTTCATTT+TGG + tig0024372:14724-14743 Msa1416540:CDS 30.0%
AGGATGATATAAGATGTAAC+TGG + tig0024372:14985-15004 Msa1416540:CDS 30.0%
TTGTTATGGTTTCTTCTTCA+AGG + tig0024372:15009-15028 Msa1416540:CDS 30.0%
TTCAAGGAAAATAAGAGAAG+AGG + tig0024372:15025-15044 Msa1416540:CDS 30.0%
!!! GAGGAGATTCTAACTTTTTT+TGG + tig0024372:15044-15063 Msa1416540:CDS 30.0%
!!! TCTAACTTTTTTTGGTAGTG+AGG + tig0024372:15052-15071 Msa1416540:CDS 30.0%
ATTGTCGTGAAGTAGAAAAT+TGG + tig0024372:15075-15094 Msa1416540:CDS 30.0%
CAAGTTAAAAAATGCACTGT+TGG + tig0024372:15197-15216 Msa1416540:CDS 30.0%
ATGAATTGCACTTTCATTGT+GGG - tig0024372:15270-15289 None:intergenic 30.0%
ATTTGATTGAGATTATCCGT+GGG + tig0024372:15291-15310 Msa1416540:CDS 30.0%
!! TTTTGTTGGCTGATCAATTA+TGG + tig0024372:15375-15394 Msa1416540:CDS 30.0%
CTCACTTATACATGTCAAAT+TGG + tig0024372:15512-15531 Msa1416540:CDS 30.0%
TTGTATAACTTCTCAGTGTT+TGG - tig0024372:15554-15573 None:intergenic 30.0%
!!! ATACATTGGTTTTAAGAAGG+AGG + tig0024372:15574-15593 Msa1416540:CDS 30.0%
! AATTATTTGAGGCTGATCAT+CGG + tig0024372:15624-15643 Msa1416540:CDS 30.0%
AGAAGTTTACAAAGTCTTTG+TGG + tig0024372:15691-15710 Msa1416540:CDS 30.0%
GAAGTTTACAAAGTCTTTGT+GGG + tig0024372:15692-15711 Msa1416540:CDS 30.0%
!! AGGTATATTAGCCTTCAATT+TGG - tig0024372:15855-15874 None:intergenic 30.0%
! CGTAATTTAAGGTTTAAACG+AGG + tig0024372:15909-15928 Msa1416540:intron 30.0%
!! TTTTACTGGTTGAACTCTTT+GGG + tig0024372:15954-15973 Msa1416540:intron 30.0%
ATGCATTCTTGTGTTTGTAT+AGG + tig0024372:16011-16030 Msa1416540:intron 30.0%
!!! GGTTTTTTTCTTTTGGAAAG+TGG + tig0024372:16084-16103 Msa1416540:intron 30.0%
!! TGGAAAGTGGACTTTTAAAT+TGG + tig0024372:16097-16116 Msa1416540:intron 30.0%
ACGTTCTACAAATGATTCAT+TGG - tig0024372:16221-16240 None:intergenic 30.0%
GGGGAAAAAACAAACAAAAA+AGG - tig0024372:16253-16272 None:intergenic 30.0%
! AAGCAAAGAGAATTCAAGTT+TGG - tig0024372:16375-16394 None:intergenic 30.0%
TTCTCTTTGCTTTGCAATAT+TGG + tig0024372:16383-16402 Msa1416540:intron 30.0%
TTGAATGAGATTTCAACAAG+TGG + tig0024372:16473-16492 Msa1416540:intron 30.0%
TGAATGAGATTTCAACAAGT+GGG + tig0024372:16474-16493 Msa1416540:intron 30.0%
AATAAATGCAAACAAGAGCT+TGG - tig0024372:16627-16646 None:intergenic 30.0%
! AGCTCTTGTTTGCATTTATT+TGG + tig0024372:16627-16646 Msa1416540:intron 30.0%
GACTTAAACATTCTCAAAAC+TGG - tig0024372:16671-16690 None:intergenic 30.0%
! AGTTTTTGTATGACACATAC+CGG + tig0024372:16901-16920 Msa1416540:intron 30.0%
! TTTTATGCTCAACTTGTACA+TGG + tig0024372:16993-17012 Msa1416540:intron 30.0%
! AGGGATACACAAATTTTACA+TGG - tig0024372:17107-17126 None:intergenic 30.0%
AATGATATTGTCAACCTTCA+TGG - tig0024372:17144-17163 None:intergenic 30.0%
! GCATTGACACTTAAATTGAA+TGG - tig0024372:17242-17261 None:intergenic 30.0%
! ACTGTTTGATGTATTTCTGT+CGG + tig0024372:17397-17416 Msa1416540:intron 30.0%
! GCATTGACACTTAAATTGAA+TGG - tig0024372:17242-17261 None:intergenic 30.0%
! ACTGTTTGATGTATTTCTGT+CGG + tig0024372:17397-17416 Msa1416540:intron 30.0%
AAGTAAAGATCGATGACAAT+AGG - tig0024372:18086-18105 None:intergenic 30.0%
TACTTAGACATGACTTAGTT+TGG + tig0024372:18101-18120 Msa1416540:three_prime_UTR 30.0%
ATTACTAATGTAGAGAGTGA+AGG - tig0024372:18242-18261 None:intergenic 30.0%
ATAACACAGTTCAAAACTGA+TGG - tig0024372:18292-18311 None:intergenic 30.0%
GATAGGCAAAATCACATTAT+AGG - tig0024372:18348-18367 None:intergenic 30.0%
CATCACTGTTCAAATTTGAT+AGG - tig0024372:18365-18384 None:intergenic 30.0%
TATGTTTGTGCATTATTGTC+TGG + tig0024372:18386-18405 Msa1416540:three_prime_UTR 30.0%
ATAATAAACTCAACTCACAC+AGG - tig0024372:18444-18463 None:intergenic 30.0%
! GTTGTTTGAGATGAAGATGA+AGG - tig0024372:14202-14221 None:intergenic 35.0%
ACTATCTTCCATTTCCATTG+TGG + tig0024372:14287-14306 Msa1416540:CDS 35.0%
GAAGATGAAAACACTAACGT+TGG - tig0024372:14348-14367 None:intergenic 35.0%
! TTTTCATCTTCTTCCACTTC+AGG + tig0024372:14357-14376 Msa1416540:CDS 35.0%
AATTTCTTGAAGCCAGAATG+CGG - tig0024372:14429-14448 None:intergenic 35.0%
! ATAAGGTTTTCACTTAGCTG+AGG - tig0024372:14576-14595 None:intergenic 35.0%
CTATCTTCACACCATAATAC+AGG - tig0024372:14759-14778 None:intergenic 35.0%
AAATACAATCCGTGTTCACA+GGG - tig0024372:14869-14888 None:intergenic 35.0%
TAAATACAATCCGTGTTCAC+AGG - tig0024372:14870-14889 None:intergenic 35.0%
ATCTTGTTGAAGTGCAGTAT+AGG + tig0024372:14895-14914 Msa1416540:CDS 35.0%
ATTTAACCACAGATGAAGGA+TGG + tig0024372:14943-14962 Msa1416540:CDS 35.0%
TTTAACCACAGATGAAGGAT+GGG + tig0024372:14944-14963 Msa1416540:CDS 35.0%
!! AAGATGTAACTGGCTTGTTA+TGG + tig0024372:14995-15014 Msa1416540:CDS 35.0%
! TAAGTTACTTTCAGGGTTGA+TGG + tig0024372:15106-15125 Msa1416540:CDS 35.0%
GGCTAGTGATAAGATTATCA+CGG + tig0024372:15127-15146 Msa1416540:CDS 35.0%
GCTAGTGATAAGATTATCAC+GGG + tig0024372:15128-15147 Msa1416540:CDS 35.0%
!! ATCGGTGTTATTAGAGTTTG+TGG + tig0024372:15242-15261 Msa1416540:CDS 35.0%
CATGAATTGCACTTTCATTG+TGG - tig0024372:15271-15290 None:intergenic 35.0%
GATTTGATTGAGATTATCCG+TGG + tig0024372:15290-15309 Msa1416540:CDS 35.0%
TTTGATTGAGATTATCCGTG+GGG + tig0024372:15292-15311 Msa1416540:CDS 35.0%
TGGGTCATCAAAAAGTTTGA+AGG + tig0024372:15316-15335 Msa1416540:CDS 35.0%
! TCTGATAATGAAGAAACGAC+TGG - tig0024372:15431-15450 None:intergenic 35.0%
CGTTTCTTCATTATCAGACA+AGG + tig0024372:15433-15452 Msa1416540:CDS 35.0%
AAGATGAGCGGATCATAAAT+GGG + tig0024372:15663-15682 Msa1416540:CDS 35.0%
TGTTGCTATAGCCAAATTGA+AGG + tig0024372:15841-15860 Msa1416540:CDS 35.0%
GAGAGTTCAACCAGATTAAT+AGG - tig0024372:15887-15906 None:intergenic 35.0%
TGAACTCTCTGCGTAATTTA+AGG + tig0024372:15898-15917 Msa1416540:intron 35.0%
!! CTTTTACTGGTTGAACTCTT+TGG + tig0024372:15953-15972 Msa1416540:intron 35.0%
TTGGATAGTTTGGATAGTCA+TGG + tig0024372:16116-16135 Msa1416540:intron 35.0%
!!! GTTTGTTTTTTCCCCTTTTC+TGG + tig0024372:16258-16277 Msa1416540:intron 35.0%
!! GTGATCAAATTTTAGTCCAG+CGG - tig0024372:16293-16312 None:intergenic 35.0%
AGTAACAAGTGCTTAGTTGT+TGG - tig0024372:16339-16358 None:intergenic 35.0%
TCTTTGCTTTGCAATATTGG+TGG + tig0024372:16386-16405 Msa1416540:intron 35.0%
! GCAATATTGGTGGTATCTAA+TGG + tig0024372:16396-16415 Msa1416540:intron 35.0%
AATATTCTTCCTTCAAGGAC+AGG + tig0024372:16428-16447 Msa1416540:intron 35.0%
! TCTGATAGTGCAGTGTTATT+TGG + tig0024372:16776-16795 Msa1416540:intron 35.0%
TATGTACGTGAAGAATCGTT+TGG - tig0024372:16836-16855 None:intergenic 35.0%
! CACTGACTGATTAACTTGAT+AGG + tig0024372:16864-16883 Msa1416540:intron 35.0%
CATGGATAGTTAGGAATAGA+GGG - tig0024372:17126-17145 None:intergenic 35.0%
TCATGGATAGTTAGGAATAG+AGG - tig0024372:17127-17146 None:intergenic 35.0%
CTATTCCTAACTATCCATGA+AGG + tig0024372:17127-17146 Msa1416540:intron 35.0%
GGAATGGCATTAGTAGTTTA+CGG - tig0024372:17353-17372 None:intergenic 35.0%
GGAATGGCATTAGTAGTTTA+CGG - tig0024372:17353-17372 None:intergenic 35.0%
! GTTTTCTTTTTTCTGCAGTC+TGG + tig0024372:17722-17741 Msa1416540:intron 35.0%
GTAAAACAACAGTCCTTTGA+AGG - tig0024372:17758-17777 None:intergenic 35.0%
CTTATCAGAACACAACAAAC+TGG + tig0024372:17777-17796 Msa1416540:CDS 35.0%
TTGGTATAAGTACCCATTTC+GGG - tig0024372:17809-17828 None:intergenic 35.0%
GTTGGTATAAGTACCCATTT+CGG - tig0024372:17810-17829 None:intergenic 35.0%
TGTAGATGATTTAGGCCATT+TGG + tig0024372:17953-17972 Msa1416540:three_prime_UTR 35.0%
CTCAAAACAGTATCAAATCC+AGG - tig0024372:18015-18034 None:intergenic 35.0%
! AAGAGCTTGCTTTAACAGAA+GGG - tig0024372:18139-18158 None:intergenic 35.0%
! GTTGACATTTTACCACTGTT+AGG + tig0024372:18175-18194 Msa1416540:three_prime_UTR 35.0%
TTCAAAAGTTGACAGAGTGA+AGG - tig0024372:18325-18344 None:intergenic 35.0%
TTTGTGAATGTGAGGGGTTT+CGG - tig0024372:14247-14266 None:intergenic 40.0%
TGAGGGATTTGTGAATGTGA+GGG - tig0024372:14254-14273 None:intergenic 40.0%
TTGAGGGATTTGTGAATGTG+AGG - tig0024372:14255-14274 None:intergenic 40.0%
TAGTGTGCGGTAGAATTTGA+GGG - tig0024372:14271-14290 None:intergenic 40.0%
ATAGTGTGCGGTAGAATTTG+AGG - tig0024372:14272-14291 None:intergenic 40.0%
TGGAAATGGAAGATAGTGTG+CGG - tig0024372:14284-14303 None:intergenic 40.0%
GAAGTAAAGATGCTGCAACA+CGG - tig0024372:14314-14333 None:intergenic 40.0%
!! ACTAACGTTGGTTCTTGAGT+AGG - tig0024372:14336-14355 None:intergenic 40.0%
TCTTCTTCCACTTCAGGTAA+TGG + tig0024372:14363-14382 Msa1416540:CDS 40.0%
! TCCACTTCAGGTAATGGTAA+CGG + tig0024372:14369-14388 Msa1416540:CDS 40.0%
!!! TAACGGTGTTGATTTTCCCA+AGG + tig0024372:14386-14405 Msa1416540:CDS 40.0%
!!! AACGGTGTTGATTTTCCCAA+GGG + tig0024372:14387-14406 Msa1416540:CDS 40.0%
ACGAAATCAAACTCACCCTT+GGG - tig0024372:14405-14424 None:intergenic 40.0%
ATTTCTTGAAGCCAGAATGC+GGG - tig0024372:14428-14447 None:intergenic 40.0%
AATATTTCCGATGGACCAGT+TGG + tig0024372:14525-14544 Msa1416540:CDS 40.0%
GATCAAATGCGGCTTTCATA+AGG - tig0024372:14593-14612 None:intergenic 40.0%
!!! GGAGTTTTGAGCCTGTATTA+TGG + tig0024372:14745-14764 Msa1416540:CDS 40.0%
CTTGTATCTGGAGAATCATC+CGG - tig0024372:14837-14856 None:intergenic 40.0%
GGGCTATCAATACTTGTATC+TGG - tig0024372:14849-14868 None:intergenic 40.0%
! TATTGATAGCCCTGTGAACA+CGG + tig0024372:14857-14876 Msa1416540:CDS 40.0%
GGACATTTAACCACAGATGA+AGG + tig0024372:14939-14958 Msa1416540:CDS 40.0%
!! TATGCTTTGAAATCGAGCAG+TGG - tig0024372:15173-15192 None:intergenic 40.0%
TGCACTGTTGGTATGTCAAA+TGG + tig0024372:15209-15228 Msa1416540:CDS 40.0%
TGTTGGTATGTCAAATGGCA+GGG + tig0024372:15214-15233 Msa1416540:CDS 40.0%
TCAAATGGCAGGGAAAAGAT+CGG + tig0024372:15224-15243 Msa1416540:CDS 40.0%
! TCCAGGAGGAGAATTTTTGT+TGG + tig0024372:15361-15380 Msa1416540:CDS 40.0%
TTATCAGACAAGGCAACTAG+TGG + tig0024372:15443-15462 Msa1416540:CDS 40.0%
GGTGCATATTTGATTGCAAC+TGG + tig0024372:15464-15483 Msa1416540:CDS 40.0%
TATTTGATTGCAACTGGAGC+AGG + tig0024372:15470-15489 Msa1416540:CDS 40.0%
TCATCTTCATGTGGCATGAT+TGG - tig0024372:15650-15669 None:intergenic 40.0%
GAAGATGAGCGGATCATAAA+TGG + tig0024372:15662-15681 Msa1416540:CDS 40.0%
TTACAAAGTCTTTGTGGGCA+AGG + tig0024372:15697-15716 Msa1416540:CDS 40.0%
CACATCTACACTTAACGATC+TGG - tig0024372:15732-15751 None:intergenic 40.0%
CAGATCGTTAAGTGTAGATG+TGG + tig0024372:15730-15749 Msa1416540:CDS 40.0%
TGGTTTCTTGCTGAAAAGTG+TGG + tig0024372:16136-16155 Msa1416540:intron 40.0%
AAGTGCTTAGTTGTTGGCAA+AGG - tig0024372:16333-16352 None:intergenic 40.0%
TGTTAATGTCCTGTCCTTGA+AGG - tig0024372:16440-16459 None:intergenic 40.0%
ATGCAAACAAGAGCTTGGAA+AGG - tig0024372:16622-16641 None:intergenic 40.0%
! GCATTTATTTGGCTCACACT+TGG + tig0024372:16638-16657 Msa1416540:intron 40.0%
GATGCTCTCATATTCCATGT+AGG + tig0024372:17069-17088 Msa1416540:intron 40.0%
GGTGATATTGTCAACCTACA+TGG - tig0024372:17086-17105 None:intergenic 40.0%
GTCAACCTTCATGGATAGTT+AGG - tig0024372:17135-17154 None:intergenic 40.0%
TGGATGTTGTATGCCTTCAA+AGG + tig0024372:17742-17761 Msa1416540:CDS 40.0%
GTACTTATACCAACCCTGAT+TGG + tig0024372:17816-17835 Msa1416540:CDS 40.0%
TCAACATCAGTGTACTCCAT+TGG + tig0024372:17854-17873 Msa1416540:CDS 40.0%
GATGTGCATTCAGGAATAAC+AGG + tig0024372:17879-17898 Msa1416540:CDS 40.0%
TGCATTCAGGAATAACAGGA+GGG + tig0024372:17883-17902 Msa1416540:CDS 40.0%
! TAGTGTGGGTTTTTATGTCC+TGG + tig0024372:17994-18013 Msa1416540:three_prime_UTR 40.0%
! GCTTGACTCTGCTGTTTAAA+TGG + tig0024372:18039-18058 Msa1416540:three_prime_UTR 40.0%
! ATGACTTAGTTTGGCCAAAC+TGG + tig0024372:18110-18129 Msa1416540:three_prime_UTR 40.0%
! CAAGAGCTTGCTTTAACAGA+AGG - tig0024372:18140-18159 None:intergenic 40.0%
CTTCTGTTAAAGCAAGCTCT+TGG + tig0024372:18138-18157 Msa1416540:three_prime_UTR 40.0%
! GTGCTAAGAGCTTGCTTTAA+GGG - tig0024372:18204-18223 None:intergenic 40.0%
! TGTGCTAAGAGCTTGCTTTA+AGG - tig0024372:18205-18224 None:intergenic 40.0%
!! CTGGTATGATTTGTTTGTCC+TGG + tig0024372:18405-18424 Msa1416540:three_prime_UTR 40.0%
TTTCGGGAAGATGAAGAGGA+TGG - tig0024372:14230-14249 None:intergenic 45.0%
TTGTGAATGTGAGGGGTTTC+GGG - tig0024372:14246-14265 None:intergenic 45.0%
GAGGGATTTGTGAATGTGAG+GGG - tig0024372:14253-14272 None:intergenic 45.0%
AACACGGTCCACAATGGAAA+TGG - tig0024372:14298-14317 None:intergenic 45.0%
ACCGTTACCATTACCTGAAG+TGG - tig0024372:14373-14392 None:intergenic 45.0%
GACGAAATCAAACTCACCCT+TGG - tig0024372:14406-14425 None:intergenic 45.0%
! TTTGATTTCGTCCCGCATTC+TGG + tig0024372:14414-14433 Msa1416540:CDS 45.0%
! GGTTAAGACTCTGTTAGCCT+CGG + tig0024372:14458-14477 Msa1416540:CDS 45.0%
TATCTGGAGAATCATCCGGA+GGG - tig0024372:14833-14852 None:intergenic 45.0%
TGAAGTGCAGTATAGGACAG+CGG + tig0024372:14902-14921 Msa1416540:CDS 45.0%
ACAGCGGGGAAATACAAATC+TGG + tig0024372:14918-14937 Msa1416540:CDS 45.0%
TGAAGGATGGGAATCGATGA+AGG + tig0024372:14956-14975 Msa1416540:CDS 45.0%
GGAATCGATGAAGGCAGTTA+AGG + tig0024372:14965-14984 Msa1416540:CDS 45.0%
AGATTATCACGGGTCTCAGT+AGG + tig0024372:15138-15157 Msa1416540:CDS 45.0%
CTGTTGGTATGTCAAATGGC+AGG + tig0024372:15213-15232 Msa1416540:CDS 45.0%
GTTTGAAGGCTGTAATCCTC+CGG + tig0024372:15330-15349 Msa1416540:CDS 45.0%
GCCAACAAAAATTCTCCTCC+TGG - tig0024372:15365-15384 None:intergenic 45.0%
AAGAAGGAGGTTCTTCACAG+AGG + tig0024372:15587-15606 Msa1416540:CDS 45.0%
TCATGCCACATGAAGATGAG+CGG + tig0024372:15651-15670 Msa1416540:CDS 45.0%
ATGATCCGCTCATCTTCATG+TGG - tig0024372:15659-15678 None:intergenic 45.0%
CAGCACGTAGCTGATATATC+TGG + tig0024372:16704-16723 Msa1416540:intron 45.0%
GTTAATCAGTCAGTGCACTC+AGG - tig0024372:16859-16878 None:intergenic 45.0%
!! GATGTATTTCTGTCGGCTTC+CGG + tig0024372:17660-17679 Msa1416540:intron 45.0%
AAACTGGACAAAGCCCGAAA+TGG + tig0024372:17793-17812 Msa1416540:CDS 45.0%
AACTGGACAAAGCCCGAAAT+GGG + tig0024372:17794-17813 Msa1416540:CDS 45.0%
TACCAACCCTGATTGGAAGA+AGG + tig0024372:17823-17842 Msa1416540:CDS 45.0%
ACAGCTCCTTCTTCCAATCA+GGG - tig0024372:17832-17851 None:intergenic 45.0%
AACAGCTCCTTCTTCCAATC+AGG - tig0024372:17833-17852 None:intergenic 45.0%
CCTGAATGCACATCAACCAA+TGG - tig0024372:17873-17892 None:intergenic 45.0%
! CCATTGGTTGATGTGCATTC+AGG + tig0024372:17870-17889 Msa1416540:CDS 45.0%
GTGCATTCAGGAATAACAGG+AGG + tig0024372:17882-17901 Msa1416540:CDS 45.0%
TTCAGGAATAACAGGAGGGA+TGG + tig0024372:17887-17906 Msa1416540:CDS 45.0%
TAACAGAAGGGAAGCCAGTT+TGG - tig0024372:18127-18146 None:intergenic 45.0%
! CTTTAAGGGAAGCCTAACAG+TGG - tig0024372:18190-18209 None:intergenic 45.0%
!! ACCAGTTGGCACTGACTCTA+AGG + tig0024372:14539-14558 Msa1416540:CDS 50.0%
ACCTTAGAGTCAGTGCCAAC+TGG - tig0024372:14543-14562 None:intergenic 50.0%
GGACACACGAGGATCAAATG+CGG - tig0024372:14604-14623 None:intergenic 50.0%
ATCTGGAGAATCATCCGGAG+GGG - tig0024372:14832-14851 None:intergenic 50.0%
GTATCTGGAGAATCATCCGG+AGG - tig0024372:14834-14853 None:intergenic 50.0%
GAAGTGCAGTATAGGACAGC+GGG + tig0024372:14903-14922 Msa1416540:CDS 50.0%
AAGTGCAGTATAGGACAGCG+GGG + tig0024372:14904-14923 Msa1416540:CDS 50.0%
CGATTCCCATCCTTCATCTG+TGG - tig0024372:14952-14971 None:intergenic 50.0%
ACGGGTCTCAGTAGGAGATT+TGG + tig0024372:15146-15165 Msa1416540:CDS 50.0%
ATTGAGATTATCCGTGGGGC+TGG + tig0024372:15296-15315 Msa1416540:CDS 50.0%
TTGAGATTATCCGTGGGGCT+GGG + tig0024372:15297-15316 Msa1416540:CDS 50.0%
!! TTTTTGATGACCCAGCCCCA+CGG - tig0024372:15310-15329 None:intergenic 50.0%
AAGGAGGTTCTTCACAGAGG+TGG + tig0024372:15590-15609 Msa1416540:CDS 50.0%
TGGTTGACGAGATTGCCCAA+GGG + tig0024372:15750-15769 Msa1416540:CDS 50.0%
GGCGGCACTAAACCATATGT+TGG + tig0024372:15790-15809 Msa1416540:CDS 50.0%
CAAGCGCGTCAACCAACATA+TGG - tig0024372:15805-15824 None:intergenic 50.0%
! CATATGTTGGTTGACGCGCT+TGG + tig0024372:15803-15822 Msa1416540:CDS 50.0%
GGCACTAGCATCCAGAAAAG+GGG - tig0024372:16272-16291 None:intergenic 50.0%
CGGCACTAGCATCCAGAAAA+GGG - tig0024372:16273-16292 None:intergenic 50.0%
ACTTCAGTCCCCTGTGCTTA+AGG + tig0024372:17267-17286 Msa1416540:intron 50.0%
AACCTCTGCCTTAAGCACAG+GGG - tig0024372:17278-17297 None:intergenic 50.0%
GAACCTCTGCCTTAAGCACA+GGG - tig0024372:17279-17298 None:intergenic 50.0%
AGAACCTCTGCCTTAAGCAC+AGG - tig0024372:17280-17299 None:intergenic 50.0%
ACTTCAGTCCCCTGTGCTTA+AGG + tig0024372:17267-17286 Msa1416540:intron 50.0%
AACCTCTGCCTTAAGCACAG+GGG - tig0024372:17278-17297 None:intergenic 50.0%
GAACCTCTGCCTTAAGCACA+GGG - tig0024372:17279-17298 None:intergenic 50.0%
AGAACCTCTGCCTTAAGCAC+AGG - tig0024372:17280-17299 None:intergenic 50.0%
CTCCTTCTTCCAATCAGGGT+TGG - tig0024372:17828-17847 None:intergenic 50.0%
ACAGGTTCACAGATAGCTCC+AGG - tig0024372:18426-18445 None:intergenic 50.0%
GGGGTTTCGGGAAGATGAAG+AGG - tig0024372:14234-14253 None:intergenic 55.0%
TGCTGCAACACGGTCCACAA+TGG - tig0024372:14304-14323 None:intergenic 55.0%
! TCTGTTAGCCTCGGAGCATG+TGG + tig0024372:14467-14486 Msa1416540:CDS 55.0%
TCCATGTTCCACATGCTCCG+AGG - tig0024372:14478-14497 None:intergenic 55.0%
GTCAGTGCCAACTGGTCCAT+CGG - tig0024372:14535-14554 None:intergenic 55.0%
AGAAACACAGCGGACACACG+AGG - tig0024372:14615-14634 None:intergenic 55.0%
! GAATCATCCGGAGGGGGTTT+TGG - tig0024372:14825-14844 None:intergenic 55.0%
TCTGGAGAATCATCCGGAGG+GGG - tig0024372:14831-14850 None:intergenic 55.0%
ATCCTCCGGATTGACAGTCC+AGG + tig0024372:15344-15363 Msa1416540:CDS 55.0%
CTCCTCCTGGACTGTCAATC+CGG - tig0024372:15352-15371 None:intergenic 55.0%
CTTTGTGGGCAAGGTAGCGA+TGG + tig0024372:15706-15725 Msa1416540:CDS 55.0%
GTGGTTGACGAGATTGCCCA+AGG + tig0024372:15749-15768 Msa1416540:CDS 55.0%
TTGACGAGATTGCCCAAGGG+CGG + tig0024372:15753-15772 Msa1416540:CDS 55.0%
ATGGTTTAGTGCCGCCTTCC+CGG - tig0024372:15786-15805 None:intergenic 55.0%
! ATGTTGGTTGACGCGCTTGG+TGG + tig0024372:15806-15825 Msa1416540:CDS 55.0%
GCGGCACTAGCATCCAGAAA+AGG - tig0024372:16274-16293 None:intergenic 55.0%
TTTCTGGATGCTAGTGCCGC+TGG + tig0024372:16274-16293 Msa1416540:intron 55.0%
!! TTCTGTCGGCTTCCGGTTTC+TGG + tig0024372:17667-17686 Msa1416540:intron 55.0%
GCCTCGGAGCATGTGGAACA+TGG + tig0024372:14474-14493 Msa1416540:CDS 60.0%
TGCACCTCCAAAACCCCCTC+CGG + tig0024372:14815-14834 Msa1416540:CDS 60.0%
!! TCATCCGGAGGGGGTTTTGG+AGG - tig0024372:14822-14841 None:intergenic 60.0%
CTCCTGGACTGTCAATCCGG+AGG - tig0024372:15349-15368 None:intergenic 60.0%
CTCCGGATTGACAGTCCAGG+AGG + tig0024372:15347-15366 Msa1416540:CDS 60.0%
AGATTGCCCAAGGGCGGCTT+TGG + tig0024372:15759-15778 Msa1416540:CDS 60.0%
GTCCCCTGTGCTTAAGGCAG+AGG + tig0024372:17273-17292 Msa1416540:intron 60.0%
GTCCCCTGTGCTTAAGGCAG+AGG + tig0024372:17273-17292 Msa1416540:intron 60.0%
!! GCCCAAGGGCGGCTTTGGAC+CGG + tig0024372:15764-15783 Msa1416540:CDS 70.0%
CCCGGTCCAAAGCCGCCCTT+GGG - tig0024372:15768-15787 None:intergenic 70.0%
!! CCCAAGGGCGGCTTTGGACC+GGG + tig0024372:15765-15784 Msa1416540:CDS 70.0%
TCCCGGTCCAAAGCCGCCCT+TGG - tig0024372:15769-15788 None:intergenic 70.0%
!! AGGGCGGCTTTGGACCGGGA+AGG + tig0024372:15769-15788 Msa1416540:CDS 70.0%
!! GCGGCTTTGGACCGGGAAGG+CGG + tig0024372:15772-15791 Msa1416540:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0024372 gene 14162 18467 14162 ID=Msa1416540;Name=Msa1416540
tig0024372 mRNA 14162 18467 14162 ID=Msa1416540-mRNA-1;Parent=Msa1416540;Name=Msa1416540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.5|1|1|1|2|538|645
tig0024372 exon 14162 15909 14162 ID=Msa1416540-mRNA-1:exon:22982;Parent=Msa1416540-mRNA-1
tig0024372 exon 17740 18467 17740 ID=Msa1416540-mRNA-1:exon:22983;Parent=Msa1416540-mRNA-1
tig0024372 CDS 14162 15909 14162 ID=Msa1416540-mRNA-1:cds;Parent=Msa1416540-mRNA-1
tig0024372 CDS 17740 17929 17740 ID=Msa1416540-mRNA-1:cds;Parent=Msa1416540-mRNA-1
tig0024372 three_prime_UTR 17930 18467 17930 ID=Msa1416540-mRNA-1:three_prime_utr;Parent=Msa1416540-mRNA-1
Gene Sequence

>Msa1416540

ATGCTTCGTTACATGTACAGAAAAGCATCACAATCATCCTTCATCTTCATCTCAAACAACTTACGCCATCCTCTTCATCTTCCCGAAACCCCTCACATTCACAAATCCCTCAAATTCTACCGCACACTATCTTCCATTTCCATTGTGGACCGTGTTGCAGCATCTTTACTTCCTACTCAAGAACCAACGTTAGTGTTTTCATCTTCTTCCACTTCAGGTAATGGTAACGGTGTTGATTTTCCCAAGGGTGAGTTTGATTTCGTCCCGCATTCTGGCTTCAAGAAATTTATTGTGAAGGTTAAGACTCTGTTAGCCTCGGAGCATGTGGAACATGGAAGTATATTGAGAATCAATTTACAAGGAAATATTTCCGATGGACCAGTTGGCACTGACTCTAAGGTATTGTCTTTACCTCAGCTAAGTGAAAACCTTATGAAAGCCGCATTTGATCCTCGTGTGTCCGCTGTGTTTCTTAACATAGTTGATTTTTATTGTGGTTGGGCTAAATGTGATGAAATTAGAAGACAGATATCAAATTTTAAAAAATCTGGTAAAAAGGTTATAGCTTTTATGGCTTCATTTTGGAGTTTTGAGCCTGTATTATGGTGTGAAGATAGATCATATTACATAGCTAGTGTATGTGATGAAATATATGCACCTCCAAAACCCCCTCCGGATGATTCTCCAGATACAAGTATTGATAGCCCTGTGAACACGGATTGTATTTATTACAATCTTGTTGAAGTGCAGTATAGGACAGCGGGGAAATACAAATCTGGACATTTAACCACAGATGAAGGATGGGAATCGATGAAGGCAGTTAAGGATGATATAAGATGTAACTGGCTTGTTATGGTTTCTTCTTCAAGGAAAATAAGAGAAGAGGAGATTCTAACTTTTTTTGGTAGTGAGGATTGTCGTGAAGTAGAAAATTGGATAGATTGTAAGTTACTTTCAGGGTTGATGGCTAGTGATAAGATTATCACGGGTCTCAGTAGGAGATTTGGACCACTGCTCGATTTCAAAGCATATTCACAAGTTAAAAAATGCACTGTTGGTATGTCAAATGGCAGGGAAAAGATCGGTGTTATTAGAGTTTGTGGATCCCACAATGAAAGTGCAATTCATGATTTGATTGAGATTATCCGTGGGGCTGGGTCATCAAAAAGTTTGAAGGCTGTAATCCTCCGGATTGACAGTCCAGGAGGAGAATTTTTGTTGGCTGATCAATTATGGAGAGAAGTCAACATTCTTGCTTCAAAGATACCAGTCGTTTCTTCATTATCAGACAAGGCAACTAGTGGTGCATATTTGATTGCAACTGGAGCAGGAACAATTGTTGCTGAGAAACTCACTTATACATGTCAAATTGGAGCGATAAACTCATTTCCAAACACTGAGAAGTTATACAAATACATTGGTTTTAAGAAGGAGGTTCTTCACAGAGGTGGTAAATATGCAGAATTATTTGAGGCTGATCATCGGCCAATCATGCCACATGAAGATGAGCGGATCATAAATGGGTTAGAAGAAGTTTACAAAGTCTTTGTGGGCAAGGTAGCGATGGCCAGATCGTTAAGTGTAGATGTGGTTGACGAGATTGCCCAAGGGCGGCTTTGGACCGGGAAGGCGGCACTAAACCATATGTTGGTTGACGCGCTTGGTGGTTTTTCACGCGCTGTTGCTATAGCCAAATTGAAGGCTAATATACCTCAAAATAGACCTATTAATCTGGTTGAACTCTCTGCTCTGGATGTTGTATGCCTTCAAAGGACTGTTGTTTTACTTATCAGAACACAACAAACTGGACAAAGCCCGAAATGGGTACTTATACCAACCCTGATTGGAAGAAGGAGCTGTTGTCAACATCAGTGTACTCCATTGGTTGATGTGCATTCAGGAATAACAGGAGGGATGGTCTCTTCAATTCAACAGTGA
Protein sequence

>Msa1416540

MLRYMYRKASQSSFIFISNNLRHPLHLPETPHIHKSLKFYRTLSSISIVDRVAASLLPTQEPTLVFSSSSTSGNGNGVDFPKGEFDFVPHSGFKKFIVKVKTLLASEHVEHGSILRINLQGNISDGPVGTDSKVLSLPQLSENLMKAAFDPRVSAVFLNIVDFYCGWAKCDEIRRQISNFKKSGKKVIAFMASFWSFEPVLWCEDRSYYIASVCDEIYAPPKPPPDDSPDTSIDSPVNTDCIYYNLVEVQYRTAGKYKSGHLTTDEGWESMKAVKDDIRCNWLVMVSSSRKIREEEILTFFGSEDCREVENWIDCKLLSGLMASDKIITGLSRRFGPLLDFKAYSQVKKCTVGMSNGREKIGVIRVCGSHNESAIHDLIEIIRGAGSSKSLKAVILRIDSPGGEFLLADQLWREVNILASKIPVVSSLSDKATSGAYLIATGAGTIVAEKLTYTCQIGAINSFPNTEKLYKYIGFKKEVLHRGGKYAELFEADHRPIMPHEDERIINGLEEVYKVFVGKVAMARSLSVDVVDEIAQGRLWTGKAALNHMLVDALGGFSRAVAIAKLKANIPQNRPINLVELSALDVVCLQRTVVLLIRTQQTGQSPKWVLIPTLIGRRSCCQHQCTPLVDVHSGITGGMVSSIQQ*