AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334260 MtrunA17_Chr4g0073661 99.429 175 1 0 1 175 1 175 2.61e-130 362
Msa1334260 MtrunA17_Chr2g0333301 70.286 175 52 0 1 175 1 175 1.35e-91 264
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334260 AT3G18430.1 69.714 175 53 0 1 175 1 175 1.64e-92 267
Msa1334260 AT3G18430.3 69.714 175 53 0 1 175 1 175 1.64e-92 267
Msa1334260 AT3G18430.2 69.714 175 53 0 1 175 1 175 1.64e-92 267

Find 77 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAACTGCCAACTGTTTC+TGG 0.003447 8_4:+54598695 None:intergenic
ATCAATCAATACCTTCATTT+TGG 0.187469 8_4:+54598724 None:intergenic
ATGAGGGAGTTTCTTGATTC+TGG 0.207485 8_4:-54594836 Msa1334260:three_prime_UTR
CCAGAAACAGTTGGCAGTTT+GGG 0.243614 8_4:-54598695 Msa1334260:five_prime_UTR
GAGAGGATTGACGGCGAATT+CGG 0.282242 8_4:+54598317 None:intergenic
CTCTCTGAGTCTGAGGGGTT+TGG 0.284352 8_4:-54598647 Msa1334260:five_prime_UTR
CCAAACTGCCAACTGTTTCT+GGG 0.320093 8_4:+54598696 None:intergenic
CCCAGAAACAGTTGGCAGTT+TGG 0.320709 8_4:-54598696 Msa1334260:five_prime_UTR
CTCTCTGTCATGCCTTACTT+TGG 0.321336 8_4:-54594864 Msa1334260:three_prime_UTR
CTGTTAGATTCTTGGCAATT+CGG 0.336457 8_4:-54594962 Msa1334260:intron
AGAGGATTGACGGCGAATTC+GGG 0.339160 8_4:+54598318 None:intergenic
TCTCTGTCATGCCTTACTTT+GGG 0.358275 8_4:-54594863 Msa1334260:three_prime_UTR
TTTGTACATACAGGAAGTTC+TGG 0.363741 8_4:-54596662 Msa1334260:intron
GAAGATGGAAGCCGAGGTTC+CGG 0.410334 8_4:-54594935 Msa1334260:CDS
GCTAGATGGCTTTAACTTCA+AGG 0.416601 8_4:-54598190 Msa1334260:CDS
CGCCGTCAATCCTCTCTCTC+AGG 0.441146 8_4:-54598310 Msa1334260:intron
TGACAGAGAGGTTTCTTTGA+GGG 0.446930 8_4:+54594877 None:intergenic
CATTACATCTGAGGAGGAAA+AGG 0.447830 8_4:+54594559 None:intergenic
GCATTGTAATCTTCCTAGAC+AGG 0.453549 8_4:-54598771 None:intergenic
TCAAAGTCAATGAGCCCATT+GGG 0.457045 8_4:-54598747 Msa1334260:five_prime_UTR
CCTTACTTTGGGTTTGATGA+GGG 0.461597 8_4:-54594852 Msa1334260:three_prime_UTR
TGTGGAGCCTCGAGCCTTGT+AGG 0.464094 8_4:-54598614 Msa1334260:five_prime_UTR
AACCAGCTTCTTCAAGAACC+TGG 0.477438 8_4:+54596638 None:intergenic
CATTGACTTTGACCCTGTCT+AGG 0.480472 8_4:+54598758 None:intergenic
GTCAAAGTCAATGAGCCCAT+TGG 0.480963 8_4:-54598748 Msa1334260:five_prime_UTR
GCCTTACTTTGGGTTTGATG+AGG 0.489581 8_4:-54594853 Msa1334260:three_prime_UTR
AGTTTGCTGAGAATGCTAGA+TGG 0.491782 8_4:-54598204 Msa1334260:CDS
GCCCAGGTTCTTGAAGAAGC+TGG 0.498841 8_4:-54596640 Msa1334260:CDS
GGGTTTGGAGTTGAATGTTG+TGG 0.499471 8_4:-54598632 Msa1334260:five_prime_UTR
GACCTGAGAGAGAGGATTGA+CGG 0.500526 8_4:+54598308 None:intergenic
CCCTCATCAAACCCAAAGTA+AGG 0.500705 8_4:+54594852 None:intergenic
TGGCAATTCGGATTTGAAGA+TGG 0.512548 8_4:-54594950 Msa1334260:CDS
AGCCCATTGGGCCAAAATGA+AGG 0.515998 8_4:-54598735 Msa1334260:five_prime_UTR
CATTTGCAAAGGGAAGAAAT+AGG 0.519095 8_4:-54594485 Msa1334260:three_prime_UTR
CACTCACTCACTCACCTACA+AGG 0.521543 8_4:+54598600 None:intergenic
ATTGACGGCGAATTCGGGAA+TGG 0.526501 8_4:+54598323 None:intergenic
TATGTCTGAACATCAAAGAA+AGG 0.529659 8_4:-54597931 Msa1334260:intron
CTATCCTCATTCTAATCCAC+CGG 0.535553 8_4:+54594916 None:intergenic
AGCTCGGTGGCATTTGCAAA+GGG 0.540739 8_4:-54594495 Msa1334260:three_prime_UTR
ATGACAGAGAGGTTTCTTTG+AGG 0.544805 8_4:+54594876 None:intergenic
GTTTATGATACGGATTGCAA+TGG 0.548032 8_4:-54598008 Msa1334260:CDS
TGAGGAGGAAAAGGAGTAGG+AGG 0.553268 8_4:+54594568 None:intergenic
AGTCTTGTCTGACTTCATGA+AGG 0.561332 8_4:-54596596 Msa1334260:intron
ATTCTAATCCACCGGAACCT+CGG 0.566807 8_4:+54594924 None:intergenic
GAGCTCGGTGGCATTTGCAA+AGG 0.573914 8_4:-54594496 Msa1334260:three_prime_UTR
GAGGGAGAGACCTGAGAGAG+AGG 0.574191 8_4:+54598300 None:intergenic
TGAAGAAGCTGGTTATACAA+AGG 0.577059 8_4:-54596629 Msa1334260:CDS
ATCTGAGGAGGAAAAGGAGT+AGG 0.582494 8_4:+54594565 None:intergenic
GAAATAGGAAAACATGCTGA+AGG 0.585155 8_4:-54594470 Msa1334260:three_prime_UTR
ATAGAAATAAACATCGCTGA+AGG 0.586713 8_4:+54594733 None:intergenic
ACCAGCTTCTTCAAGAACCT+GGG 0.593590 8_4:+54596639 None:intergenic
CATACAGGAAGTTCTGGCCC+AGG 0.597067 8_4:-54596656 Msa1334260:intron
GATGGAAGCCGAGGTTCCGG+TGG 0.604419 8_4:-54594932 Msa1334260:CDS
GGTTTCTTTGAGGGTACTCG+AGG 0.606994 8_4:+54594886 None:intergenic
CATTGTAATCTTCCTAGACA+GGG 0.607353 8_4:-54598770 None:intergenic
CAGAAACAGTTGGCAGTTTG+GGG 0.608920 8_4:-54598694 Msa1334260:five_prime_UTR
ATGGAGAGAAATTCATCGGA+AGG 0.609376 8_4:+54598342 None:intergenic
TTTACAGTACATTACATCTG+AGG 0.610548 8_4:+54594550 None:intergenic
GTGAGTGAGTGATCGATCGA+TGG 0.613535 8_4:-54598588 Msa1334260:exon
GGGAATGGAGAGAAATTCAT+CGG 0.618385 8_4:+54598338 None:intergenic
AATGTCGTACTGTGTGAGCA+TGG 0.625820 8_4:+54598553 None:intergenic
ACAGTACATTACATCTGAGG+AGG 0.626144 8_4:+54594553 None:intergenic
GATCGAGTTGACAGAAACGC+TGG 0.627666 8_4:+54598385 None:intergenic
ACGAGCAGATAAAACGAGCT+CGG 0.634511 8_4:-54594511 Msa1334260:three_prime_UTR
GGTTCCGGTGGATTAGAATG+AGG 0.636783 8_4:-54594920 Msa1334260:exon
AATGAAGGTATTGATTGATG+TGG 0.646000 8_4:-54598720 Msa1334260:five_prime_UTR
GGATTTGAAGATGGAAGCCG+AGG 0.649425 8_4:-54594941 Msa1334260:CDS
GTTTCTTTGAGGGTACTCGA+GGG 0.652377 8_4:+54594887 None:intergenic
CAACTCGATCGCAACAACTG+TGG 0.660071 8_4:-54598372 Msa1334260:CDS
AGCAGATAAAACGAGCTCGG+TGG 0.660784 8_4:-54594508 Msa1334260:three_prime_UTR
TCTCTCTCTCTGAGTCTGAG+GGG 0.662779 8_4:-54598652 Msa1334260:five_prime_UTR
CAAAGTAAGGCATGACAGAG+AGG 0.664183 8_4:+54594865 None:intergenic
ATGAAGGTATTGATTGATGT+GGG 0.670887 8_4:-54598719 Msa1334260:five_prime_UTR
TGAGTGAGTGATCGATCGAT+GGG 0.670985 8_4:-54598587 Msa1334260:exon
GATGTGGGCCCAGAAACAGT+TGG 0.675310 8_4:-54598704 Msa1334260:five_prime_UTR
TCACTCACCTACAAGGCTCG+AGG 0.682931 8_4:+54598607 None:intergenic
TTGTGTTGAAGAGTGGCGCG+TGG 0.694317 8_4:+54598138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAATTACAAAAAAAA+GGG + chr8_4:54595873-54595892 None:intergenic 10.0%
!!! TATTTTCAATTACAAAAAAA+AGG + chr8_4:54595874-54595893 None:intergenic 10.0%
!!! TCTATATATTTTTTTTGAAT+CGG - chr8_4:54596752-54596771 Msa1334260:intron 10.0%
!! GTTAATTATATTCATATAAA+CGG - chr8_4:54597697-54597716 Msa1334260:intron 10.0%
!!! TCAACATTTAATTAATTTTA+GGG + chr8_4:54598719-54598738 None:intergenic 10.0%
!!! TTCAACATTTAATTAATTTT+AGG + chr8_4:54598720-54598739 None:intergenic 10.0%
!! ACAATCAAATAATAACATAA+GGG - chr8_4:54595454-54595473 Msa1334260:intron 15.0%
!! TAATTGAAAATATGTAAATG+AGG - chr8_4:54595882-54595901 Msa1334260:intron 15.0%
!! AAATTGTCAAAATTACAATT+GGG + chr8_4:54595964-54595983 None:intergenic 15.0%
!! AAAATTGTCAAAATTACAAT+TGG + chr8_4:54595965-54595984 None:intergenic 15.0%
!! TAATTGTTTATCATTATAAG+TGG + chr8_4:54596018-54596037 None:intergenic 15.0%
!! AAATATATAGATAAATGTTC+AGG + chr8_4:54596743-54596762 None:intergenic 15.0%
!!! TTTACAATGCTTTTTTTTTT+TGG + chr8_4:54596926-54596945 None:intergenic 15.0%
!! CCATATATAGATAAATATTT+CGG + chr8_4:54597315-54597334 None:intergenic 15.0%
!!! AACATTATTTTGGATTTTTA+TGG + chr8_4:54597660-54597679 None:intergenic 15.0%
!! TATATATGCTAAATCAAATT+AGG + chr8_4:54597958-54597977 None:intergenic 15.0%
!!! TTTTGAACTATAGTAATAAT+CGG - chr8_4:54598532-54598551 Msa1334260:CDS 15.0%
!! TTTCAATTCAAAATGCAAAA+TGG - chr8_4:54594894-54594913 Msa1334260:three_prime_UTR 20.0%
!! TTCAATTCAAAATGCAAAAT+GGG - chr8_4:54594895-54594914 Msa1334260:three_prime_UTR 20.0%
!! AAATAACTACAAGAAACAAA+AGG + chr8_4:54595111-54595130 None:intergenic 20.0%
!!! TATTTTCAAGGTTTATGATA+CGG - chr8_4:54595126-54595145 Msa1334260:intron 20.0%
!! CACAATCAAATAATAACATA+AGG - chr8_4:54595453-54595472 Msa1334260:intron 20.0%
!!! TCAATGAGTATATTTTAAAG+GGG + chr8_4:54595607-54595626 None:intergenic 20.0%
!!! CTCAATGAGTATATTTTAAA+GGG + chr8_4:54595608-54595627 None:intergenic 20.0%
!!! ACTCAATGAGTATATTTTAA+AGG + chr8_4:54595609-54595628 None:intergenic 20.0%
!!! TAACTTGCATTAATGATTTT+AGG + chr8_4:54596717-54596736 None:intergenic 20.0%
!! TAAAATCATTAATGCAAGTT+AGG - chr8_4:54596716-54596735 Msa1334260:intron 20.0%
!! TGGACAAAATAAAATACAAA+TGG - chr8_4:54596814-54596833 Msa1334260:intron 20.0%
!!! AAAAAAAAGCATTGTAAACA+CGG - chr8_4:54596928-54596947 Msa1334260:intron 20.0%
!! ATATAGATAAATATTTCGGT+GGG + chr8_4:54597311-54597330 None:intergenic 20.0%
!! TATATAGATAAATATTTCGG+TGG + chr8_4:54597312-54597331 None:intergenic 20.0%
!! CCGAAATATTTATCTATATA+TGG - chr8_4:54597312-54597331 Msa1334260:intron 20.0%
!!! TGTTTGAATTAAAAGCTTTT+TGG - chr8_4:54597727-54597746 Msa1334260:intron 20.0%
!!! TCTTTATTTGAAACATACAT+AGG - chr8_4:54597931-54597950 Msa1334260:intron 20.0%
!! TATGTTTATCTTAGAAACTT+AGG - chr8_4:54597983-54598002 Msa1334260:CDS 20.0%
!!! CATTTTTTTCAAATGAAAGA+TGG + chr8_4:54598144-54598163 None:intergenic 20.0%
!!! AATATGATTGTTTTAGCTAT+TGG - chr8_4:54598455-54598474 Msa1334260:intron 20.0%
!!! ACATTTAATTAATTTTAGGG+TGG + chr8_4:54598716-54598735 None:intergenic 20.0%
!! ATCAATCAATACCTTCATTT+TGG + chr8_4:54594423-54594442 None:intergenic 25.0%
! GTTAAAGGAAATAGAAATGA+AGG + chr8_4:54594690-54594709 None:intergenic 25.0%
! AAAGAAAACGAAGAAGTTAA+AGG + chr8_4:54594705-54594724 None:intergenic 25.0%
! TGCTTGCATAAATTCATAAT+TGG - chr8_4:54595067-54595086 Msa1334260:intron 25.0%
!!! GTTTCTTGTAGTTATTTTCA+AGG - chr8_4:54595114-54595133 Msa1334260:intron 25.0%
!!! TAGTTTTGATGATATGTTGA+CGG - chr8_4:54595165-54595184 Msa1334260:intron 25.0%
! AGAAAAAACAAATGCATAAC+AGG + chr8_4:54595259-54595278 None:intergenic 25.0%
!!! AATTCCCAAATCAGTTTTAA+AGG + chr8_4:54595377-54595396 None:intergenic 25.0%
! CCTTAAAACATCATATTGTT+GGG + chr8_4:54595429-54595448 None:intergenic 25.0%
!!! CCAACAATATGATGTTTTAA+GGG - chr8_4:54595427-54595446 Msa1334260:intron 25.0%
! TCAAATAATAACATAAGGGT+AGG - chr8_4:54595458-54595477 Msa1334260:intron 25.0%
! TGTGTAATTGAAAATATGTG+AGG - chr8_4:54595673-54595692 Msa1334260:intron 25.0%
! GTGTAATTGAAAATATGTGA+GGG - chr8_4:54595674-54595693 Msa1334260:intron 25.0%
! TGTAATTGAAAATATGTGAG+GGG - chr8_4:54595675-54595694 Msa1334260:intron 25.0%
!! GTTGAGAATGAAGATTTTAT+TGG - chr8_4:54595904-54595923 Msa1334260:intron 25.0%
! TATGAACAATGAATAATCGA+CGG - chr8_4:54596143-54596162 Msa1334260:intron 25.0%
!!! AATAAATGTCATTTTTCCGT+AGG + chr8_4:54596195-54596214 None:intergenic 25.0%
! TCAAATATTTGTAAGGATAG+GGG + chr8_4:54596294-54596313 None:intergenic 25.0%
! CTCAAATATTTGTAAGGATA+GGG + chr8_4:54596295-54596314 None:intergenic 25.0%
! TGCACTAAAATACTTAAGTT+TGG - chr8_4:54596603-54596622 Msa1334260:CDS 25.0%
!! TTTTAATATGCAATTGCAAG+TGG - chr8_4:54596632-54596651 Msa1334260:CDS 25.0%
!!! TTTTTTTTGGAGTCTGTTTT+AGG + chr8_4:54596913-54596932 None:intergenic 25.0%
!! ATCTTGAGAAGAGTATAATA+TGG - chr8_4:54597486-54597505 Msa1334260:intron 25.0%
! CTTAAATACTGTCTGTTTAA+AGG + chr8_4:54597625-54597644 None:intergenic 25.0%
!!! AGCTTTTAATTCAAACAAGT+TGG + chr8_4:54597724-54597743 None:intergenic 25.0%
!! TTTAACTTATTGGCAGTAAA+GGG + chr8_4:54597899-54597918 None:intergenic 25.0%
! TCAAATAAAGATACTGAAGT+TGG + chr8_4:54597922-54597941 None:intergenic 25.0%
! AATCTAACAGTAAAAAGGAA+CGG + chr8_4:54598172-54598191 None:intergenic 25.0%
! TTGATTGCAAAACAAAAACT+CGG - chr8_4:54598367-54598386 Msa1334260:CDS 25.0%
!! AATGAAGGTATTGATTGATG+TGG - chr8_4:54594424-54594443 Msa1334260:three_prime_UTR 30.0%
!! ATGAAGGTATTGATTGATGT+GGG - chr8_4:54594425-54594444 Msa1334260:three_prime_UTR 30.0%
! TTCAATTTTGTGTTGAAGAG+TGG + chr8_4:54595016-54595035 None:intergenic 30.0%
TATGTCTGAACATCAAAGAA+AGG - chr8_4:54595213-54595232 Msa1334260:intron 30.0%
! TATGCGTTTTGTGTATGAAT+TGG - chr8_4:54595290-54595309 Msa1334260:intron 30.0%
ATTCTCTATGGTAGATAACT+AGG + chr8_4:54595333-54595352 None:intergenic 30.0%
TAGAAATTGAGCATTCTCTA+TGG + chr8_4:54595345-54595364 None:intergenic 30.0%
AGAATGCTCAATTTCTATTC+TGG - chr8_4:54595348-54595367 Msa1334260:intron 30.0%
GAATGCTCAATTTCTATTCT+GGG - chr8_4:54595349-54595368 Msa1334260:intron 30.0%
!! GGTTCCTTTAAAACTGATTT+GGG - chr8_4:54595370-54595389 Msa1334260:intron 30.0%
! CCCAACAATATGATGTTTTA+AGG - chr8_4:54595426-54595445 Msa1334260:intron 30.0%
CCCTTAAAACATCATATTGT+TGG + chr8_4:54595430-54595449 None:intergenic 30.0%
!! GTATATTTTAAAGGGGTGAA+GGG + chr8_4:54595600-54595619 None:intergenic 30.0%
!! AGTATATTTTAAAGGGGTGA+AGG + chr8_4:54595601-54595620 None:intergenic 30.0%
TTGTGTCTGTTGAAAATATG+AGG - chr8_4:54595633-54595652 Msa1334260:intron 30.0%
TGTGTCTGTTGAAAATATGA+GGG - chr8_4:54595634-54595653 Msa1334260:intron 30.0%
TACAATACACCAATAATGGT+GGG - chr8_4:54595799-54595818 Msa1334260:intron 30.0%
! GAGAATGAAGATTTTATTGG+AGG - chr8_4:54595907-54595926 Msa1334260:intron 30.0%
! TATTGACAGATTTTGTCTGT+AGG - chr8_4:54596211-54596230 Msa1334260:intron 30.0%
CCTCAAATATTTGTAAGGAT+AGG + chr8_4:54596296-54596315 None:intergenic 30.0%
CCTATCCTTACAAATATTTG+AGG - chr8_4:54596293-54596312 Msa1334260:intron 30.0%
! GTATTCTGTTTTGTACATAC+AGG - chr8_4:54596473-54596492 Msa1334260:intron 30.0%
TGAGAAAAACCAAAAAGACT+TGG + chr8_4:54596676-54596695 None:intergenic 30.0%
!!! GTTTGGGAGTTTTATTTTGA+GGG + chr8_4:54596996-54597015 None:intergenic 30.0%
!!! TTTGACTCAAGTTGGTTTTT+GGG + chr8_4:54597125-54597144 None:intergenic 30.0%
ACTATAGTACCAAATTAGCA+GGG - chr8_4:54597188-54597207 Msa1334260:intron 30.0%
! AATCTTTGTTCGACTTGATT+TGG + chr8_4:54597245-54597264 None:intergenic 30.0%
! TTGATTTGAGAAAAAATGCC+AGG + chr8_4:54597416-54597435 None:intergenic 30.0%
!!! TGGCATTTTTTCTCAAATCA+AGG - chr8_4:54597415-54597434 Msa1334260:intron 30.0%
ATTATACTCTTCTCAAGATC+AGG + chr8_4:54597485-54597504 None:intergenic 30.0%
ACCTAACTTATTTAGTAGCT+AGG - chr8_4:54597802-54597821 Msa1334260:intron 30.0%
! GTTTAACTTATTGGCAGTAA+AGG + chr8_4:54597900-54597919 None:intergenic 30.0%
! CTGAAGTTGGTTTAACTTAT+TGG + chr8_4:54597909-54597928 None:intergenic 30.0%
CCAAGAATCTAACAGTAAAA+AGG + chr8_4:54598177-54598196 None:intergenic 30.0%
! CCTTTTTACTGTTAGATTCT+TGG - chr8_4:54598174-54598193 Msa1334260:CDS 30.0%
TGATTGCAAAACAAAAACTC+GGG - chr8_4:54598368-54598387 Msa1334260:CDS 30.0%
ATAGAAATAAACATCGCTGA+AGG + chr8_4:54598414-54598433 None:intergenic 30.0%
GAACTATAGTAATAATCGGA+AGG - chr8_4:54598536-54598555 Msa1334260:CDS 30.0%
TTTACAGTACATTACATCTG+AGG + chr8_4:54598597-54598616 None:intergenic 30.0%
! GTTTATGATACGGATTGCAA+TGG - chr8_4:54595136-54595155 Msa1334260:intron 35.0%
! ATGATATGTTGACGGTTTTG+AGG - chr8_4:54595173-54595192 Msa1334260:intron 35.0%
!! TGATATGTTGACGGTTTTGA+GGG - chr8_4:54595174-54595193 Msa1334260:intron 35.0%
ACACAAAACGCATAAAGCAT+AGG + chr8_4:54595284-54595303 None:intergenic 35.0%
TCTATGGTAGATAACTAGGA+AGG + chr8_4:54595329-54595348 None:intergenic 35.0%
!! GGGTTCCTTTAAAACTGATT+TGG - chr8_4:54595369-54595388 Msa1334260:intron 35.0%
!! GATTTGGGAATTTGATTTGC+TGG - chr8_4:54595385-54595404 Msa1334260:intron 35.0%
CCAATTTATGGAGTTATTCC+CGG - chr8_4:54595491-54595510 Msa1334260:intron 35.0%
AAAAGACAGTATGTAACCTC+AGG - chr8_4:54595533-54595552 Msa1334260:intron 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr8_4:54595716-54595735 Msa1334260:intron 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - chr8_4:54595766-54595785 Msa1334260:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + chr8_4:54595771-54595790 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - chr8_4:54595771-54595790 Msa1334260:intron 35.0%
TGCGTACAATACACCAATAA+TGG - chr8_4:54595795-54595814 Msa1334260:intron 35.0%
GTACAATACACCAATAATGG+TGG - chr8_4:54595798-54595817 Msa1334260:intron 35.0%
TTACAAAAAAAAGGGCAACC+CGG + chr8_4:54595865-54595884 None:intergenic 35.0%
! ATGAAGATTTTATTGGAGGC+AGG - chr8_4:54595911-54595930 Msa1334260:intron 35.0%
! TGAAGATTTTATTGGAGGCA+GGG - chr8_4:54595912-54595931 Msa1334260:intron 35.0%
! TTTTTCCGTAGGTAAAAGTC+CGG + chr8_4:54596184-54596203 None:intergenic 35.0%
! TATTTGAGGCCTCCATAAAT+TGG - chr8_4:54596307-54596326 Msa1334260:intron 35.0%
AAAACTGATATCCTCCAATC+AGG + chr8_4:54596377-54596396 None:intergenic 35.0%
TTCAATCGCACAAGATAATG+AGG - chr8_4:54596418-54596437 Msa1334260:intron 35.0%
TCAATCGCACAAGATAATGA+GGG - chr8_4:54596419-54596438 Msa1334260:intron 35.0%
CAAGATAATGAGGGATGATT+TGG - chr8_4:54596428-54596447 Msa1334260:intron 35.0%
TTTGTACATACAGGAAGTTC+TGG - chr8_4:54596482-54596501 Msa1334260:intron 35.0%
TGAAGAAGCTGGTTATACAA+AGG - chr8_4:54596515-54596534 Msa1334260:intron 35.0%
AATATGCAATTGCAAGTGGT+AGG - chr8_4:54596636-54596655 Msa1334260:CDS 35.0%
! GATTATGCACCAAGTCTTTT+TGG - chr8_4:54596664-54596683 Msa1334260:intron 35.0%
!!! TTATCTTCAGGGGTGTTTTT+AGG + chr8_4:54596869-54596888 None:intergenic 35.0%
!!! TTTTGGTGGGTTTATCTTCA+GGG + chr8_4:54596880-54596899 None:intergenic 35.0%
!! TTTTAGGTGGTGATGTGTTT+TGG + chr8_4:54596897-54596916 None:intergenic 35.0%
!!! TTTTTGGAGTCTGTTTTAGG+TGG + chr8_4:54596910-54596929 None:intergenic 35.0%
!!! GGTTTGGGAGTTTTATTTTG+AGG + chr8_4:54596997-54597016 None:intergenic 35.0%
!!! CTTTGACTCAAGTTGGTTTT+TGG + chr8_4:54597126-54597145 None:intergenic 35.0%
!! ATCACTTTTGATTCGAGATC+GGG + chr8_4:54597157-54597176 None:intergenic 35.0%
!! GATCACTTTTGATTCGAGAT+CGG + chr8_4:54597158-54597177 None:intergenic 35.0%
GATCTCGAATCAAAAGTGAT+CGG - chr8_4:54597157-54597176 Msa1334260:intron 35.0%
ATTTGGTACTATAGTCTGGT+GGG + chr8_4:54597183-54597202 None:intergenic 35.0%
AATTTGGTACTATAGTCTGG+TGG + chr8_4:54597184-54597203 None:intergenic 35.0%
GCTAATTTGGTACTATAGTC+TGG + chr8_4:54597187-54597206 None:intergenic 35.0%
GACTATAGTACCAAATTAGC+AGG - chr8_4:54597187-54597206 Msa1334260:intron 35.0%
!!! GACTTGATTTGGTTTTTCTC+TGG + chr8_4:54597234-54597253 None:intergenic 35.0%
TGGTTTCACACATAATAGCT+TGG - chr8_4:54597332-54597351 Msa1334260:intron 35.0%
TCAGTTAAACTAAACTGACC+TGG - chr8_4:54597395-54597414 Msa1334260:intron 35.0%
TAAATTGAGCTTATAGCTCC+AGG - chr8_4:54597573-54597592 Msa1334260:intron 35.0%
! CAGGCCTAAGATTTTATGTA+GGG - chr8_4:54597592-54597611 Msa1334260:intron 35.0%
! AGGCCTAAGATTTTATGTAG+GGG - chr8_4:54597593-54597612 Msa1334260:intron 35.0%
TGACCCCTACATAAAATCTT+AGG + chr8_4:54597599-54597618 None:intergenic 35.0%
GCCTAGCTACTAAATAAGTT+AGG + chr8_4:54597806-54597825 None:intergenic 35.0%
AATGTATTAGGCATTAGGCA+GGG + chr8_4:54597828-54597847 None:intergenic 35.0%
AAATGTATTAGGCATTAGGC+AGG + chr8_4:54597829-54597848 None:intergenic 35.0%
CCTGAAATGTATTAGGCATT+AGG + chr8_4:54597833-54597852 None:intergenic 35.0%
CCTAATGCCTAATACATTTC+AGG - chr8_4:54597830-54597849 Msa1334260:intron 35.0%
CCTATGACCTGAAATGTATT+AGG + chr8_4:54597840-54597859 None:intergenic 35.0%
! CCTAATACATTTCAGGTCAT+AGG - chr8_4:54597837-54597856 Msa1334260:intron 35.0%
!! CCATGCTCATGATTGTTTTA+GGG - chr8_4:54598036-54598055 Msa1334260:intron 35.0%
CTGTTAGATTCTTGGCAATT+CGG - chr8_4:54598182-54598201 Msa1334260:CDS 35.0%
!!! GATTGTTTTAGCTATTGGTG+TGG - chr8_4:54598460-54598479 Msa1334260:intron 35.0%
CATTTGCAAAGGGAAGAAAT+AGG - chr8_4:54598659-54598678 Msa1334260:five_prime_UTR 35.0%
GAAATAGGAAAACATGCTGA+AGG - chr8_4:54598674-54598693 Msa1334260:five_prime_UTR 35.0%
TCAAAGTCAATGAGCCCATT+GGG - chr8_4:54594397-54594416 Msa1334260:three_prime_UTR 40.0%
!! TACCTTCATTTTGGCCCAAT+GGG + chr8_4:54594414-54594433 None:intergenic 40.0%
!! ATACCTTCATTTTGGCCCAA+TGG + chr8_4:54594415-54594434 None:intergenic 40.0%
ATGGAGAGAAATTCATCGGA+AGG + chr8_4:54594805-54594824 None:intergenic 40.0%
GGGAATGGAGAGAAATTCAT+CGG + chr8_4:54594809-54594828 None:intergenic 40.0%
!! AGTTTGCTGAGAATGCTAGA+TGG - chr8_4:54594940-54594959 Msa1334260:CDS 40.0%
!! GCTAGATGGCTTTAACTTCA+AGG - chr8_4:54594954-54594973 Msa1334260:CDS 40.0%
AACAAATGCATAACAGGAGC+AGG + chr8_4:54595253-54595272 None:intergenic 40.0%
ACTAGGAAGGAAACAGTGAA+AGG + chr8_4:54595316-54595335 None:intergenic 40.0%
AACATAAGGGTAGGAGAGTA+TGG - chr8_4:54595467-54595486 Msa1334260:intron 40.0%
! ACATAAGGGTAGGAGAGTAT+GGG - chr8_4:54595468-54595487 Msa1334260:intron 40.0%
CCGGGAATAACTCCATAAAT+TGG + chr8_4:54595494-54595513 None:intergenic 40.0%
!!! TTTAGTTTTCCAGCTTCTCC+GGG + chr8_4:54595512-54595531 None:intergenic 40.0%
!!! GTTTAGTTTTCCAGCTTCTC+CGG + chr8_4:54595513-54595532 None:intergenic 40.0%
! AAGCTTTATCTCATCTCCTG+AGG + chr8_4:54595552-54595571 None:intergenic 40.0%
AAATATGTGAGGGGTAACCT+TGG - chr8_4:54595684-54595703 Msa1334260:intron 40.0%
CAGCCTCTTGTGTAAAAAAC+AGG - chr8_4:54595765-54595784 Msa1334260:intron 40.0%
AATTGGGCCTCTAAATTGTC+GGG + chr8_4:54595948-54595967 None:intergenic 40.0%
CAATTGGGCCTCTAAATTGT+CGG + chr8_4:54595949-54595968 None:intergenic 40.0%
! GGATAGGGGTATAATTGTTG+CGG + chr8_4:54596280-54596299 None:intergenic 40.0%
GGAGGCCTCAAATATTTGTA+AGG + chr8_4:54596301-54596320 None:intergenic 40.0%
! AGTCTTGTCTGACTTCATGA+AGG - chr8_4:54596548-54596567 Msa1334260:intron 40.0%
CAATTGCAAGTGGTAGGTTA+GGG - chr8_4:54596642-54596661 Msa1334260:CDS 40.0%
CAAATGGTACCGCATATAGA+CGG - chr8_4:54596830-54596849 Msa1334260:intron 40.0%
TATGGTGTACCGTCTATATG+CGG + chr8_4:54596842-54596861 None:intergenic 40.0%
!! TTTGGTGGGTTTATCTTCAG+GGG + chr8_4:54596879-54596898 None:intergenic 40.0%
!!! GTTTTGGTGGGTTTATCTTC+AGG + chr8_4:54596881-54596900 None:intergenic 40.0%
!!! ATTTTGAGGGCGTTCTTTGT+GGG + chr8_4:54596983-54597002 None:intergenic 40.0%
!!! TATTTTGAGGGCGTTCTTTG+TGG + chr8_4:54596984-54597003 None:intergenic 40.0%
TTCGAAATGTGGCTCAGTTT+GGG + chr8_4:54597026-54597045 None:intergenic 40.0%
GTGATAGCTACATGATCCTT+CGG + chr8_4:54597059-54597078 None:intergenic 40.0%
TTTGTGTTGTACTCTTTCGG+TGG + chr8_4:54597101-54597120 None:intergenic 40.0%
! GGCTTTGTGTTGTACTCTTT+CGG + chr8_4:54597104-54597123 None:intergenic 40.0%
GTCAGTTCTTTGACTCAAGT+TGG + chr8_4:54597133-54597152 None:intergenic 40.0%
!! TTGGTTTTTCTCTGGTGTAC+CGG + chr8_4:54597226-54597245 None:intergenic 40.0%
AGATAAATATTTCGGTGGGC+CGG + chr8_4:54597307-54597326 None:intergenic 40.0%
CATAATAGCTTGGAGTGACA+AGG - chr8_4:54597342-54597361 Msa1334260:intron 40.0%
TGAACAATTTCCATGCTCCA+TGG + chr8_4:54597378-54597397 None:intergenic 40.0%
CCTACATAAAATCTTAGGCC+TGG + chr8_4:54597594-54597613 None:intergenic 40.0%
! CCAGGCCTAAGATTTTATGT+AGG - chr8_4:54597591-54597610 Msa1334260:intron 40.0%
AACTTATTGGCAGTAAAGGG+CGG + chr8_4:54597896-54597915 None:intergenic 40.0%
AACTTAGGTCCTACTGTTTG+AGG - chr8_4:54597998-54598017 Msa1334260:CDS 40.0%
ACTTAGGTCCTACTGTTTGA+GGG - chr8_4:54597999-54598018 Msa1334260:CDS 40.0%
TTGTATCACCCTCAAACAGT+AGG + chr8_4:54598010-54598029 None:intergenic 40.0%
! GCCATGCTCATGATTGTTTT+AGG - chr8_4:54598035-54598054 Msa1334260:intron 40.0%
CCCTAAAACAATCATGAGCA+TGG + chr8_4:54598039-54598058 None:intergenic 40.0%
TGGCAATTCGGATTTGAAGA+TGG - chr8_4:54598194-54598213 Msa1334260:CDS 40.0%
CTATCCTCATTCTAATCCAC+CGG + chr8_4:54598231-54598250 None:intergenic 40.0%
TGACAGAGAGGTTTCTTTGA+GGG + chr8_4:54598270-54598289 None:intergenic 40.0%
ATGACAGAGAGGTTTCTTTG+AGG + chr8_4:54598271-54598290 None:intergenic 40.0%
TCTCTGTCATGCCTTACTTT+GGG - chr8_4:54598281-54598300 Msa1334260:intron 40.0%
! CCTTACTTTGGGTTTGATGA+GGG - chr8_4:54598292-54598311 Msa1334260:intron 40.0%
ATGAGGGAGTTTCTTGATTC+TGG - chr8_4:54598308-54598327 Msa1334260:intron 40.0%
CATTACATCTGAGGAGGAAA+AGG + chr8_4:54598588-54598607 None:intergenic 40.0%
ACAGTACATTACATCTGAGG+AGG + chr8_4:54598594-54598613 None:intergenic 40.0%
!! CATTGACTTTGACCCTGTCT+AGG + chr8_4:54594389-54594408 None:intergenic 45.0%
GTCAAAGTCAATGAGCCCAT+TGG - chr8_4:54594396-54594415 Msa1334260:three_prime_UTR 45.0%
! CCAAACTGCCAACTGTTTCT+GGG + chr8_4:54594451-54594470 None:intergenic 45.0%
CCAGAAACAGTTGGCAGTTT+GGG - chr8_4:54594449-54594468 Msa1334260:three_prime_UTR 45.0%
CAGAAACAGTTGGCAGTTTG+GGG - chr8_4:54594450-54594469 Msa1334260:three_prime_UTR 45.0%
! GGGTTTGGAGTTGAATGTTG+TGG - chr8_4:54594512-54594531 Msa1334260:three_prime_UTR 45.0%
TGAGTGAGTGATCGATCGAT+GGG - chr8_4:54594557-54594576 Msa1334260:three_prime_UTR 45.0%
AATGTCGTACTGTGTGAGCA+TGG + chr8_4:54594594-54594613 None:intergenic 45.0%
TCGATTTATAGCAGCTTGCG+AGG + chr8_4:54594874-54594893 None:intergenic 45.0%
!!! ACGGTTTTGAGGGATTTGAC+TGG - chr8_4:54595184-54595203 Msa1334260:intron 45.0%
AACAGGAGCAGGAGAAAGAT+TGG + chr8_4:54595242-54595261 None:intergenic 45.0%
! GGAGAGTATGGGCCAATTTA+TGG - chr8_4:54595479-54595498 Msa1334260:intron 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr8_4:54595720-54595739 Msa1334260:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr8_4:54595760-54595779 None:intergenic 45.0%
ATTGGGCCTCTAAATTGTCG+GGG + chr8_4:54595947-54595966 None:intergenic 45.0%
ACGGCAAAACTGTTGTCTTC+CGG - chr8_4:54596162-54596181 Msa1334260:intron 45.0%
! GTCTTCCGGACTTTTACCTA+CGG - chr8_4:54596176-54596195 Msa1334260:intron 45.0%
TTGAGGCCTCCATAAATTGG+AGG - chr8_4:54596310-54596329 Msa1334260:intron 45.0%
ACCAGCTTCTTCAAGAACCT+GGG + chr8_4:54596508-54596527 None:intergenic 45.0%
AACCAGCTTCTTCAAGAACC+TGG + chr8_4:54596509-54596528 None:intergenic 45.0%
GCAATTGCAAGTGGTAGGTT+AGG - chr8_4:54596641-54596660 Msa1334260:CDS 45.0%
!!! GGGGTGTTTTTAGGTGGTTA+TGG + chr8_4:54596860-54596879 None:intergenic 45.0%
!!! TCTTCAGGGGTGTTTTTAGG+TGG + chr8_4:54596866-54596885 None:intergenic 45.0%
!!! AGGTGGTGATGTGTTTTGGT+GGG + chr8_4:54596893-54596912 None:intergenic 45.0%
!! TAGGTGGTGATGTGTTTTGG+TGG + chr8_4:54596894-54596913 None:intergenic 45.0%
CTTCGAAATGTGGCTCAGTT+TGG + chr8_4:54597027-54597046 None:intergenic 45.0%
GTTAGGTGCTCTTCGAAATG+TGG + chr8_4:54597037-54597056 None:intergenic 45.0%
AGCTACATGATCCTTCGGTT+AGG + chr8_4:54597054-54597073 None:intergenic 45.0%
GTTGTACTCTTTCGGTGGAT+CGG + chr8_4:54597096-54597115 None:intergenic 45.0%
! TGGTTTTTCTCTGGTGTACC+GGG + chr8_4:54597225-54597244 None:intergenic 45.0%
! GTTCATTTGGCTTCGAGATC+GGG + chr8_4:54597285-54597304 None:intergenic 45.0%
! GGTTCATTTGGCTTCGAGAT+CGG + chr8_4:54597286-54597305 None:intergenic 45.0%
GATCTCGAAGCCAAATGAAC+CGG - chr8_4:54597285-54597304 Msa1334260:intron 45.0%
ATCAAGGCCTAAGATTGTCC+TGG - chr8_4:54597431-54597450 Msa1334260:intron 45.0%
! GATTGGTCCAGGACAATCTT+AGG + chr8_4:54597441-54597460 None:intergenic 45.0%
GGAAATGAGTCTACGCAGAT+TGG + chr8_4:54597458-54597477 None:intergenic 45.0%
CTCTTCTCAAGATCAGGCAA+TGG + chr8_4:54597479-54597498 None:intergenic 45.0%
ACTTATTGGCAGTAAAGGGC+GGG + chr8_4:54597895-54597914 None:intergenic 45.0%
GTTTGAGGGTGATACAACTG+AGG - chr8_4:54598013-54598032 Msa1334260:CDS 45.0%
ATTCTAATCCACCGGAACCT+CGG + chr8_4:54598223-54598242 None:intergenic 45.0%
!! GTTTCTTTGAGGGTACTCGA+GGG + chr8_4:54598260-54598279 None:intergenic 45.0%
CAAAGTAAGGCATGACAGAG+AGG + chr8_4:54598282-54598301 None:intergenic 45.0%
CTCTCTGTCATGCCTTACTT+TGG - chr8_4:54598280-54598299 Msa1334260:intron 45.0%
! GCCTTACTTTGGGTTTGATG+AGG - chr8_4:54598291-54598310 Msa1334260:intron 45.0%
CCCTCATCAAACCCAAAGTA+AGG + chr8_4:54598295-54598314 None:intergenic 45.0%
ATCTGAGGAGGAAAAGGAGT+AGG + chr8_4:54598582-54598601 None:intergenic 45.0%
ACGAGCAGATAAAACGAGCT+CGG - chr8_4:54598633-54598652 Msa1334260:five_prime_UTR 45.0%
!!! TATTTTTATTAACATTATTT+TGG + chr8_4:54597670-54597689 None:intergenic 5.0%
AGCCCATTGGGCCAAAATGA+AGG - chr8_4:54594409-54594428 Msa1334260:three_prime_UTR 50.0%
CCCAGAAACAGTTGGCAGTT+TGG - chr8_4:54594448-54594467 Msa1334260:three_prime_UTR 50.0%
CCCAAACTGCCAACTGTTTC+TGG + chr8_4:54594452-54594471 None:intergenic 50.0%
TCTCTCTCTCTCTGAGTCTG+AGG - chr8_4:54594490-54594509 Msa1334260:three_prime_UTR 50.0%
CTCTCTCTCTCTGAGTCTGA+GGG - chr8_4:54594491-54594510 Msa1334260:three_prime_UTR 50.0%
TCTCTCTCTCTGAGTCTGAG+GGG - chr8_4:54594492-54594511 Msa1334260:three_prime_UTR 50.0%
CACTCACTCACTCACCTACA+AGG + chr8_4:54594547-54594566 None:intergenic 50.0%
GTGAGTGAGTGATCGATCGA+TGG - chr8_4:54594556-54594575 Msa1334260:three_prime_UTR 50.0%
!! GATCGAGTTGACAGAAACGC+TGG + chr8_4:54594762-54594781 None:intergenic 50.0%
CAACTCGATCGCAACAACTG+TGG - chr8_4:54594772-54594791 Msa1334260:three_prime_UTR 50.0%
ATTGACGGCGAATTCGGGAA+TGG + chr8_4:54594824-54594843 None:intergenic 50.0%
AGAGGATTGACGGCGAATTC+GGG + chr8_4:54594829-54594848 None:intergenic 50.0%
GAGAGGATTGACGGCGAATT+CGG + chr8_4:54594830-54594849 None:intergenic 50.0%
GACCTGAGAGAGAGGATTGA+CGG + chr8_4:54594839-54594858 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr8_4:54595704-54595723 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG - chr8_4:54595726-54595745 Msa1334260:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG - chr8_4:54595727-54595746 Msa1334260:intron 50.0%
ACTAAAGCTCCCGCATATGC+GGG + chr8_4:54595839-54595858 None:intergenic 50.0%
CACTAAAGCTCCCGCATATG+CGG + chr8_4:54595840-54595859 None:intergenic 50.0%
! GATTTTATTGGAGGCAGGGC+CGG - chr8_4:54595916-54595935 Msa1334260:intron 50.0%
! ATTTTATTGGAGGCAGGGCC+GGG - chr8_4:54595917-54595936 Msa1334260:intron 50.0%
GCAAAGAGCAAGGAGCTCTA+TGG + chr8_4:54596343-54596362 None:intergenic 50.0%
!! CTGTTCTAGGGCAAAGAGCA+AGG + chr8_4:54596353-54596372 None:intergenic 50.0%
CTTGCTCTTTGCCCTAGAAC+AGG - chr8_4:54596351-54596370 Msa1334260:intron 50.0%
CTCCAATCAGGCCTGTTCTA+GGG + chr8_4:54596365-54596384 None:intergenic 50.0%
TCCATACCTTGCGTCTTGCA+GGG + chr8_4:54596798-54596817 None:intergenic 50.0%
TGTGGGTGAGTAGTGACGAT+GGG + chr8_4:54596966-54596985 None:intergenic 50.0%
TTGTGGGTGAGTAGTGACGA+TGG + chr8_4:54596967-54596986 None:intergenic 50.0%
!! CAGTTTGGGTGTTGGGGTTT+GGG + chr8_4:54597012-54597031 None:intergenic 50.0%
!! TCAGTTTGGGTGTTGGGGTT+TGG + chr8_4:54597013-54597032 None:intergenic 50.0%
TGTGGCTCAGTTTGGGTGTT+GGG + chr8_4:54597019-54597038 None:intergenic 50.0%
ATGTGGCTCAGTTTGGGTGT+TGG + chr8_4:54597020-54597039 None:intergenic 50.0%
!! TTCGAAGAGCACCTAACCGA+AGG - chr8_4:54597040-54597059 Msa1334260:intron 50.0%
! GTTTTTCTCTGGTGTACCGG+GGG + chr8_4:54597223-54597242 None:intergenic 50.0%
! GGTTTTTCTCTGGTGTACCG+GGG + chr8_4:54597224-54597243 None:intergenic 50.0%
TCAGGTCATAGGTTCGTGAC+AGG - chr8_4:54597848-54597867 Msa1334260:intron 50.0%
GGATTTGAAGATGGAAGCCG+AGG - chr8_4:54598203-54598222 Msa1334260:CDS 50.0%
!! GGTTCCGGTGGATTAGAATG+AGG - chr8_4:54598224-54598243 Msa1334260:intron 50.0%
!! GGTTTCTTTGAGGGTACTCG+AGG + chr8_4:54598261-54598280 None:intergenic 50.0%
TGAGGAGGAAAAGGAGTAGG+AGG + chr8_4:54598579-54598598 None:intergenic 50.0%
AGCAGATAAAACGAGCTCGG+TGG - chr8_4:54598636-54598655 Msa1334260:five_prime_UTR 50.0%
! AGCTCGGTGGCATTTGCAAA+GGG - chr8_4:54598649-54598668 Msa1334260:five_prime_UTR 50.0%
GATGTGGGCCCAGAAACAGT+TGG - chr8_4:54594440-54594459 Msa1334260:three_prime_UTR 55.0%
CTCTCTGAGTCTGAGGGGTT+TGG - chr8_4:54594497-54594516 Msa1334260:three_prime_UTR 55.0%
TCACTCACCTACAAGGCTCG+AGG + chr8_4:54594540-54594559 None:intergenic 55.0%
AGCAGCTTGCGAGGAAGAGA+GGG + chr8_4:54594865-54594884 None:intergenic 55.0%
TAGCAGCTTGCGAGGAAGAG+AGG + chr8_4:54594866-54594885 None:intergenic 55.0%
TTGTGTTGAAGAGTGGCGCG+TGG + chr8_4:54595009-54595028 None:intergenic 55.0%
GGAGTTATTCCCGGAGAAGC+TGG - chr8_4:54595500-54595519 Msa1334260:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr8_4:54595739-54595758 Msa1334260:intron 55.0%
GGAAGGGGTCCCACCATTAT+TGG + chr8_4:54595811-54595830 None:intergenic 55.0%
! ATAATGGTGGGACCCCTTCC+CGG - chr8_4:54595811-54595830 Msa1334260:intron 55.0%
CTAAAGCTCCCGCATATGCG+GGG + chr8_4:54595838-54595857 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr8_4:54595843-54595862 Msa1334260:intron 55.0%
GGCCTCTAAATTGTCGGGGA+CGG + chr8_4:54595943-54595962 None:intergenic 55.0%
GCCTCCATAAATTGGAGGCC+CGG - chr8_4:54596315-54596334 Msa1334260:intron 55.0%
AGCAAGGAGCTCTATGGAGC+CGG + chr8_4:54596337-54596356 None:intergenic 55.0%
TGCCCTAGAACAGGCCTGAT+TGG - chr8_4:54596360-54596379 Msa1334260:intron 55.0%
CCTCCAATCAGGCCTGTTCT+AGG + chr8_4:54596366-54596385 None:intergenic 55.0%
CCTAGAACAGGCCTGATTGG+AGG - chr8_4:54596363-54596382 Msa1334260:intron 55.0%
! CATACAGGAAGTTCTGGCCC+AGG - chr8_4:54596488-54596507 Msa1334260:intron 55.0%
GCCCAGGTTCTTGAAGAAGC+TGG - chr8_4:54596504-54596523 Msa1334260:intron 55.0%
TCCCTGCAAGACGCAAGGTA+TGG - chr8_4:54596794-54596813 Msa1334260:intron 55.0%
GTCCATACCTTGCGTCTTGC+AGG + chr8_4:54596799-54596818 None:intergenic 55.0%
! GTGGCTCAGTTTGGGTGTTG+GGG + chr8_4:54597018-54597037 None:intergenic 55.0%
GTACTCTTTCGGTGGATCGG+AGG + chr8_4:54597093-54597112 None:intergenic 55.0%
!! TGAGGGGTGCCCTGCTAATT+TGG + chr8_4:54597200-54597219 None:intergenic 55.0%
TTGGCTTCGAGATCGGGAGT+CGG + chr8_4:54597279-54597298 None:intergenic 55.0%
! TTTCGGTGGGCCGGTTCATT+TGG + chr8_4:54597298-54597317 None:intergenic 55.0%
! GACAAGGTCACTGACTGCCA+TGG - chr8_4:54597358-54597377 Msa1334260:intron 55.0%
! TCACTGACTGCCATGGAGCA+TGG - chr8_4:54597365-54597384 Msa1334260:intron 55.0%
! GAGTCTACGCAGATTGGTCC+AGG + chr8_4:54597452-54597471 None:intergenic 55.0%
GAAGATGGAAGCCGAGGTTC+CGG - chr8_4:54598209-54598228 Msa1334260:intron 55.0%
! GAGCTCGGTGGCATTTGCAA+AGG - chr8_4:54598648-54598667 Msa1334260:five_prime_UTR 55.0%
! TGTGGAGCCTCGAGCCTTGT+AGG - chr8_4:54594530-54594549 Msa1334260:three_prime_UTR 60.0%
CGCCGTCAATCCTCTCTCTC+AGG - chr8_4:54594834-54594853 Msa1334260:three_prime_UTR 60.0%
GAGGGAGAGACCTGAGAGAG+AGG + chr8_4:54594847-54594866 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr8_4:54595693-54595712 Msa1334260:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr8_4:54595844-54595863 Msa1334260:intron 60.0%
CTAAATTGTCGGGGACGGCC+CGG + chr8_4:54595938-54595957 None:intergenic 60.0%
GGCCGTCCCCGACAATTTAG+AGG - chr8_4:54595938-54595957 Msa1334260:intron 60.0%
GCCGGGCCTCCAATTTATGG+AGG + chr8_4:54596319-54596338 None:intergenic 60.0%
GGAGCCGGGCCTCCAATTTA+TGG + chr8_4:54596322-54596341 None:intergenic 60.0%
GCAAGGAGCTCTATGGAGCC+GGG + chr8_4:54596336-54596355 None:intergenic 60.0%
CGTCATCCCTGCAAGACGCA+AGG - chr8_4:54596789-54596808 Msa1334260:intron 60.0%
TGAGTAGTGACGATGGGCGG+GGG + chr8_4:54596960-54596979 None:intergenic 60.0%
GTGAGTAGTGACGATGGGCG+GGG + chr8_4:54596961-54596980 None:intergenic 60.0%
GGTGAGTAGTGACGATGGGC+GGG + chr8_4:54596962-54596981 None:intergenic 60.0%
GGGTGAGTAGTGACGATGGG+CGG + chr8_4:54596963-54596982 None:intergenic 60.0%
TGGCTTCGAGATCGGGAGTC+GGG + chr8_4:54597278-54597297 None:intergenic 60.0%
CATATGCGGGGTCCGGGAAG+GGG + chr8_4:54595826-54595845 None:intergenic 65.0%
GCATATGCGGGGTCCGGGAA+GGG + chr8_4:54595827-54595846 None:intergenic 65.0%
CTTCCCGGACCCCGCATATG+CGG - chr8_4:54595826-54595845 Msa1334260:intron 65.0%
TTCCCGGACCCCGCATATGC+GGG - chr8_4:54595827-54595846 Msa1334260:intron 65.0%
TGGATCGGAGGTCGCGAGGT+TGG + chr8_4:54597081-54597100 None:intergenic 65.0%
TCTGGTGTACCGGGGGTGAG+GGG + chr8_4:54597216-54597235 None:intergenic 65.0%
CTCTGGTGTACCGGGGGTGA+GGG + chr8_4:54597217-54597236 None:intergenic 65.0%
TCTCTGGTGTACCGGGGGTG+AGG + chr8_4:54597218-54597237 None:intergenic 65.0%
GGCTTCGAGATCGGGAGTCG+GGG + chr8_4:54597277-54597296 None:intergenic 65.0%
GATGGAAGCCGAGGTTCCGG+TGG - chr8_4:54598212-54598231 Msa1334260:intron 65.0%
CGCATATGCGGGGTCCGGGA+AGG + chr8_4:54595828-54595847 None:intergenic 70.0%
CTCCCGCATATGCGGGGTCC+GGG + chr8_4:54595832-54595851 None:intergenic 70.0%
GCTCCCGCATATGCGGGGTC+CGG + chr8_4:54595833-54595852 None:intergenic 70.0%
GTAGTGACGATGGGCGGGGG+TGG + chr8_4:54596957-54596976 None:intergenic 70.0%
TCGGTGGATCGGAGGTCGCG+AGG + chr8_4:54597085-54597104 None:intergenic 70.0%
! AGCAGGGCACCCCTCACCCC+CGG - chr8_4:54597204-54597223 Msa1334260:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54594382 54598784 54594382 ID=Msa1334260;Name=Msa1334260
chr8_4 mRNA 54594382 54598784 54594382 ID=Msa1334260-mRNA-1;Parent=Msa1334260;Name=Msa1334260-mRNA-1;_AED=0.14;_eAED=0.14;_QI=193|1|1|1|0.83|0.71|7|493|175
chr8_4 exon 54594382 54594609 54594382 ID=Msa1334260-mRNA-1:exon:17009;Parent=Msa1334260-mRNA-1
chr8_4 exon 54594662 54594977 54594662 ID=Msa1334260-mRNA-1:exon:17008;Parent=Msa1334260-mRNA-1
chr8_4 exon 54596597 54596671 54596597 ID=Msa1334260-mRNA-1:exon:17007;Parent=Msa1334260-mRNA-1
chr8_4 exon 54597932 54598041 54597932 ID=Msa1334260-mRNA-1:exon:17006;Parent=Msa1334260-mRNA-1
chr8_4 exon 54598130 54598226 54598130 ID=Msa1334260-mRNA-1:exon:17005;Parent=Msa1334260-mRNA-1
chr8_4 exon 54598311 54598435 54598311 ID=Msa1334260-mRNA-1:exon:17004;Parent=Msa1334260-mRNA-1
chr8_4 exon 54598522 54598784 54598522 ID=Msa1334260-mRNA-1:exon:17003;Parent=Msa1334260-mRNA-1
chr8_4 five_prime_UTR 54598592 54598784 54598592 ID=Msa1334260-mRNA-1:five_prime_utr;Parent=Msa1334260-mRNA-1
chr8_4 CDS 54598522 54598591 54598522 ID=Msa1334260-mRNA-1:cds;Parent=Msa1334260-mRNA-1
chr8_4 CDS 54598311 54598435 54598311 ID=Msa1334260-mRNA-1:cds;Parent=Msa1334260-mRNA-1
chr8_4 CDS 54598130 54598226 54598130 ID=Msa1334260-mRNA-1:cds;Parent=Msa1334260-mRNA-1
chr8_4 CDS 54597932 54598041 54597932 ID=Msa1334260-mRNA-1:cds;Parent=Msa1334260-mRNA-1
chr8_4 CDS 54596597 54596671 54596597 ID=Msa1334260-mRNA-1:cds;Parent=Msa1334260-mRNA-1
chr8_4 CDS 54594927 54594977 54594927 ID=Msa1334260-mRNA-1:cds;Parent=Msa1334260-mRNA-1
chr8_4 three_prime_UTR 54594662 54594926 54594662 ID=Msa1334260-mRNA-1:three_prime_utr;Parent=Msa1334260-mRNA-1
chr8_4 three_prime_UTR 54594382 54594609 54594382 ID=Msa1334260-mRNA-1:three_prime_utr;Parent=Msa1334260-mRNA-1
Gene Sequence

>Msa1334260

ATGGGTAACACATCTTCCATGCTCACACAGTACGACATTGAAGAAGTTCAACAACACTGCAAACACGCATTTACTCAGCAAGAGATCGTTTCACTTTACCAGCGTTTCTGTCAACTCGATCGCAACAACTGTGGTTTCATTCCTTCCGATGAATTTCTCTCCATTCCCGAATTCGCCGTCAATCCTCTCTCTCAGAGTTTGCTGAGAATGCTAGATGGCTTTAACTTCAAGGAATTTATAGCTTTCTTGTCTGCATTTAGTCCACGCGCCACTCTTCAACACAAAATTGAATTTATTTTCAAGGTTTATGATACGGATTGCAATGGAAAAGTTAGTTTTGATGATATGTTGACGGTTTTGAGGGATTTGACTGGACAATATATGTCTGAACATCAAAGAAAGGAAGTTCTGGCCCAGGTTCTTGAAGAAGCTGGTTATACAAAGGATTCTTTCTTAGTCTTGTCTGACTTCATGAAGATTCTTGGCAATTCGGATTTGAAGATGGAAGCCGAGGTTCCGGTGGATTAG
Protein sequence

>Msa1334260

MGNTSSMLTQYDIEEVQQHCKHAFTQQEIVSLYQRFCQLDRNNCGFIPSDEFLSIPEFAVNPLSQSLLRMLDGFNFKEFIAFLSAFSPRATLQHKIEFIFKVYDTDCNGKVSFDDMLTVLRDLTGQYMSEHQRKEVLAQVLEEAGYTKDSFLVLSDFMKILGNSDLKMEAEVPVD*