AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1416590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416590 MtrunA17_Chr4g0061881 45.149 536 245 13 79 582 71 589 9.46e-137 414
Msa1416590 MtrunA17_Chr2g0307851 41.808 531 271 9 79 583 84 602 2.42e-126 387
Msa1416590 MtrunA17_Chr4g0069071 39.628 376 207 6 130 494 5 371 1.99e-74 243
Msa1416590 MtrunA17_Chr4g0073611 35.197 304 160 8 149 445 2 275 4.32e-46 164
Msa1416590 MtrunA17_Chr5g0408331 31.856 361 159 12 76 429 32 312 4.22e-40 149
Msa1416590 MtrunA17_Chr4g0061841 33.660 306 110 8 148 442 8 231 3.05e-37 139
Msa1416590 MtrunA17_Chr4g0076561 37.255 204 100 3 337 539 10 186 1.04e-34 130
Msa1416590 MtrunA17_Chr5g0437391 30.460 348 179 9 210 553 12 300 1.52e-34 134
Msa1416590 MtrunA17_Chr8g0344851 41.885 191 95 6 411 594 1 182 2.36e-34 129
Msa1416590 MtrunA17_Chr4g0061831 52.294 109 51 1 473 581 9 116 9.59e-32 119
Msa1416590 MtrunA17_Chr4g0064001 43.537 147 68 3 436 582 4 135 6.00e-25 103
Msa1416590 MtrunA17_Chr4g0076571 55.128 78 26 1 144 221 1 69 4.26e-21 88.6
Msa1416590 MtrunA17_Chr8g0344821 44.444 99 53 1 484 582 11 107 8.20e-21 88.2
Msa1416590 MtrunA17_Chr5g0437441 51.648 91 38 3 107 194 7 94 1.27e-20 87.4
Msa1416590 MtrunA17_Chr8g0344831 43.750 112 58 2 326 432 7 118 3.13e-18 80.9
Msa1416590 MtrunA17_Chr5g0437451 35.507 138 68 4 443 578 30 148 1.37e-16 77.4
Msa1416590 MtrunA17_Chr4g0073621 61.017 59 21 1 526 582 1 59 3.76e-16 73.6
Msa1416590 MtrunA17_Chr4g0069081 44.706 85 47 0 506 590 1 85 3.96e-16 74.7
Msa1416590 MtrunA17_Chr5g0408341 63.462 52 19 0 531 582 1 52 2.87e-14 70.5
Msa1416590 MtrunA17_Chr4g0063991 49.254 67 33 1 338 403 1 67 2.27e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1416590 AT1G73990.1 38.475 590 320 13 22 582 32 607 9.84e-119 369
Msa1416590 AT1G73990.2 37.448 478 261 9 79 530 90 555 1.35e-92 298

Find 178 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATTTCGTCCCGCATTC+TGG 0.209844 tig0024372:+49235 Msa1416590:CDS
GAAGATGAGCGGATCATAAA+TGG 0.215556 tig0024372:+50483 Msa1416590:CDS
TGTGCTAAGAGCTTGCTTTA+AGG 0.216377 tig0024372:-52757 None:intergenic
GCTTGACTCTGCTGTTTAAA+TGG 0.219189 tig0024372:+52594 Msa1416590:three_prime_UTR
ATAGATTGTAGGTTACTTTC+AGG 0.236540 tig0024372:+49919 Msa1416590:CDS
GATAGGCAAAATCACATTAT+AGG 0.245255 tig0024372:-52900 None:intergenic
TTGTGAATGTGAGGGGTTTC+GGG 0.245290 tig0024372:-49064 None:intergenic
TTTGTGAATGTGAGGGGTTT+CGG 0.257624 tig0024372:-49065 None:intergenic
TATTAGCATGTAGATGATTT+AGG 0.257669 tig0024372:+52500 Msa1416590:three_prime_UTR
TTGGTATAAGTACCCATTTC+CGG 0.263741 tig0024372:-52361 None:intergenic
CTCACTTATACATGTCAAAT+TGG 0.274908 tig0024372:+50333 Msa1416590:CDS
CCATTGGTTGATGTGCATTC+AGG 0.286389 tig0024372:+52425 Msa1416590:exon
GAGAGTTCAACCAGATTAAT+AGG 0.304701 tig0024372:-50705 None:intergenic
AACAGCTCCTTCTTCCAATC+AGG 0.317463 tig0024372:-52385 None:intergenic
AGATTGCCCAAGGGCGGCTT+TGG 0.320112 tig0024372:+50580 Msa1416590:CDS
TACTTAGACATGACTTAGTT+TGG 0.326609 tig0024372:+52656 Msa1416590:three_prime_UTR
ATGACTTAGTTTGGCCAAAC+TGG 0.336189 tig0024372:+52665 Msa1416590:three_prime_UTR
TTGTATAACTTCTCAGTGTT+TGG 0.338375 tig0024372:-50372 None:intergenic
TAGGTTACTTTCAGGGTTGA+TGG 0.343659 tig0024372:+49927 Msa1416590:CDS
AGGTATATTAGCCTTCAATT+TGG 0.345021 tig0024372:-50673 None:intergenic
CATCACTGTTCAAATTTGAT+AGG 0.347256 tig0024372:-52917 None:intergenic
GGGCTATCAATACTTGTATC+TGG 0.347744 tig0024372:-49667 None:intergenic
AACTGGACAAAGCCCGGAAA+TGG 0.348893 tig0024372:+52348 Msa1416590:CDS
CTGGTATGCTTTGTTTGTCC+TGG 0.349003 tig0024372:+52960 Msa1416590:three_prime_UTR
TAGAAAATTGGATAGATTGT+AGG 0.350787 tig0024372:+49908 Msa1416590:CDS
GTGCTAAGAGCTTGCTTTAA+GGG 0.353149 tig0024372:-52756 None:intergenic
TAACAGAAGGGAAGCCAGTT+TGG 0.364170 tig0024372:-52679 None:intergenic
ACCAGTTGGCACTGACTCTA+AGG 0.365682 tig0024372:+49360 Msa1416590:CDS
TGTAGATGATTTAGGCCATT+TGG 0.369425 tig0024372:+52508 Msa1416590:three_prime_UTR
TCCCGGTCCAAAGCCGCCCT+TGG 0.369925 tig0024372:-50587 None:intergenic
TTGTTATGGTTTCTTCTTCA+AGG 0.372590 tig0024372:+49830 Msa1416590:CDS
ATTGAGATTATCCGTGGGGC+TGG 0.376386 tig0024372:+50117 Msa1416590:CDS
ATCGGTGTTATTAGAGTTTG+TGG 0.378619 tig0024372:+50063 Msa1416590:CDS
TGGTATAAGTACCCATTTCC+GGG 0.381711 tig0024372:-52360 None:intergenic
AAGATGTAACTGGCTTGTTA+TGG 0.382012 tig0024372:+49816 Msa1416590:CDS
TCTTCTTCCACTTCAGGTAA+TGG 0.382352 tig0024372:+49184 Msa1416590:CDS
ATTGTCGTGAAGTAGAAAAT+TGG 0.383838 tig0024372:+49896 Msa1416590:CDS
TCATCTTCATGTGGCATGAT+TGG 0.388034 tig0024372:-50468 None:intergenic
ACGGGTCTCAGTAGGAGATT+TGG 0.389865 tig0024372:+49967 Msa1416590:CDS
GCCCAAGGGCGGCTTTGGAC+CGG 0.392493 tig0024372:+50585 Msa1416590:CDS
TCAAAATAGACCTATTAATC+TGG 0.409814 tig0024372:+50695 Msa1416590:CDS
CTTATCAGAACACAACAAAC+TGG 0.418408 tig0024372:+52331 Msa1416590:CDS
CTCCTCCTGGACTGTCAATC+CGG 0.422871 tig0024372:-50170 None:intergenic
AAGTAAAGATCGATGACAAT+AGG 0.426110 tig0024372:-52638 None:intergenic
CCCAAGGGCGGCTTTGGACC+GGG 0.429403 tig0024372:+50586 Msa1416590:CDS
TATGTTTGTGCATTATTGTC+TGG 0.433909 tig0024372:+52941 Msa1416590:three_prime_UTR
GATGTGCATTCAGGAATAAC+AGG 0.437794 tig0024372:+52434 Msa1416590:exon
GGTGCATATTTGATTGCAAC+TGG 0.441687 tig0024372:+50285 Msa1416590:CDS
CCCGGTCCAAAGCCGCCCTT+GGG 0.444189 tig0024372:-50586 None:intergenic
GTAAAACAACAGTCCTTTGA+AGG 0.445649 tig0024372:-52309 None:intergenic
GAAGTTTACAAAGTCTTTGT+GGG 0.446335 tig0024372:+50513 Msa1416590:CDS
GATCAAATGCGGCTTTCATA+AGG 0.449687 tig0024372:-49411 None:intergenic
GGAATCGATGAAGGCAGTTA+AGG 0.451737 tig0024372:+49786 Msa1416590:CDS
TATTTGATTGCAACTGGAGC+AGG 0.455192 tig0024372:+50291 Msa1416590:CDS
AACACGGTCCACAATGGAAA+TGG 0.473603 tig0024372:-49116 None:intergenic
TAAATACAATCCGTGTTCAC+AGG 0.476299 tig0024372:-49688 None:intergenic
TAGTGTGCGGTAGAATTTGA+GGG 0.478545 tig0024372:-49089 None:intergenic
CACATCTACACTTAACGATC+TGG 0.479653 tig0024372:-50550 None:intergenic
GACGAAATCAAACTCACCCT+TGG 0.479725 tig0024372:-49224 None:intergenic
ACCTTAGAGTCAGTGCCAAC+TGG 0.479839 tig0024372:-49361 None:intergenic
ATGAATTGCACCTTCATTGT+GGG 0.482660 tig0024372:-50088 None:intergenic
AGAAGTTTACAAAGTCTTTG+TGG 0.483301 tig0024372:+50512 Msa1416590:CDS
ACCGTTACCATTACCTGAAG+TGG 0.483377 tig0024372:-49191 None:intergenic
TTGAGATTATCCGTGGGGCT+GGG 0.490077 tig0024372:+50118 Msa1416590:CDS
ACAACAAACTGGACAAAGCC+CGG 0.491518 tig0024372:+52342 Msa1416590:CDS
CTTCAAGAAATTTATTGTGA+AGG 0.493765 tig0024372:+49258 Msa1416590:CDS
ACTGGACAAAGCCCGGAAAT+GGG 0.496394 tig0024372:+52349 Msa1416590:CDS
CTATCTTCACACCATAATAC+AGG 0.496409 tig0024372:-49577 None:intergenic
ATCTTGTTGAAGTGCAGTAT+AGG 0.498853 tig0024372:+49716 Msa1416590:CDS
AACTAGCATATAAAACCAAA+TGG 0.499171 tig0024372:-52523 None:intergenic
TAGATTGTAGGTTACTTTCA+GGG 0.501518 tig0024372:+49920 Msa1416590:CDS
GTACTTATACCAACCCTGAT+TGG 0.505029 tig0024372:+52371 Msa1416590:CDS
CTTCTGTTAAAGCAAGCTCT+TGG 0.507466 tig0024372:+52693 Msa1416590:three_prime_UTR
ATAGTGTGCGGTAGAATTTG+AGG 0.507587 tig0024372:-49090 None:intergenic
CTTGTATCTGGAGAATCATC+CGG 0.508155 tig0024372:-49655 None:intergenic
AGGATGATATAAGATGTAAC+TGG 0.510806 tig0024372:+49806 Msa1416590:CDS
GAAGTGCAGTATAGGACAGC+GGG 0.512732 tig0024372:+49724 Msa1416590:CDS
TGTTGCTATAGCCAAATTGA+AGG 0.514181 tig0024372:+50662 Msa1416590:CDS
ACAGCGGGGAAATACAAATC+TGG 0.516542 tig0024372:+49739 Msa1416590:CDS
CAAGAGCTTGCTTTAACAGA+AGG 0.519724 tig0024372:-52692 None:intergenic
CAAGCGCGTCAACCAACATA+TGG 0.522040 tig0024372:-50623 None:intergenic
ATGTTGGTTGACGCGCTTGG+TGG 0.522308 tig0024372:+50627 Msa1416590:CDS
CGTTTCTTCATTATCAGACA+AGG 0.522976 tig0024372:+50254 Msa1416590:CDS
TGCACTGTTGGTATGTCAAA+TGG 0.523328 tig0024372:+50030 Msa1416590:CDS
CTCCTTCTTCCAATCAGGGT+TGG 0.525262 tig0024372:-52380 None:intergenic
ATTTCTTGAAGCCAGAATGC+GGG 0.525455 tig0024372:-49246 None:intergenic
TCAACATCAGTGTACTCCAT+TGG 0.529318 tig0024372:+52409 Msa1416590:CDS
ACGAAATCAAACTCACCCTT+GGG 0.529474 tig0024372:-49223 None:intergenic
GTTTGAAGGCTGTAATCCTC+CGG 0.530693 tig0024372:+50151 Msa1416590:CDS
TTACAAGGAAATATTTCCGA+TGG 0.530898 tig0024372:+49337 Msa1416590:CDS
TTACAAAGTCTTTGTGGGCA+AGG 0.531876 tig0024372:+50518 Msa1416590:CDS
AAGATGAGCGGATCATAAAT+GGG 0.535057 tig0024372:+50484 Msa1416590:CDS
TAAATATGCAGAATTATTTG+AGG 0.535075 tig0024372:+50434 Msa1416590:CDS
GTCAGTGCCAACTGGTCCAT+CGG 0.538824 tig0024372:-49353 None:intergenic
TGAAGGATGGGAATCGATGA+AGG 0.539636 tig0024372:+49777 Msa1416590:CDS
GGACATTTAACCACAGATGA+AGG 0.540268 tig0024372:+49760 Msa1416590:CDS
ACTATCTTCCATTTCCATTG+TGG 0.545148 tig0024372:+49108 Msa1416590:CDS
GTTGTTTGAGATGAAGATGA+AGG 0.549690 tig0024372:-49020 None:intergenic
GCCTCGGAGCATGTGGAACA+TGG 0.549933 tig0024372:+49295 Msa1416590:CDS
CTCAAAACAGTATCAAATCC+AGG 0.550202 tig0024372:-52567 None:intergenic
AGATTATCACGGGTCTCAGT+AGG 0.550801 tig0024372:+49959 Msa1416590:CDS
CATGAATTGCACCTTCATTG+TGG 0.551816 tig0024372:-50089 None:intergenic
GCGGCTTTGGACCGGGAAGG+CGG 0.553063 tig0024372:+50593 Msa1416590:CDS
ACTAACGTTGGTTCTTGAGT+AGG 0.554396 tig0024372:-49154 None:intergenic
TTCAAGGAAAATAAGAGAAG+AGG 0.555199 tig0024372:+49846 Msa1416590:CDS
GTTTGTGGATCCCACAATGA+AGG 0.556262 tig0024372:+50078 Msa1416590:CDS
AGGGCGGCTTTGGACCGGGA+AGG 0.558400 tig0024372:+50590 Msa1416590:CDS
GATTTGATTGAGATTATCCG+TGG 0.559731 tig0024372:+50111 Msa1416590:CDS
CTGTTGGTATGTCAAATGGC+AGG 0.562620 tig0024372:+50034 Msa1416590:CDS
TCCACTTCAGGTAATGGTAA+CGG 0.563991 tig0024372:+49190 Msa1416590:CDS
TCTGTTAGCCTCGGAGCATG+TGG 0.564327 tig0024372:+49288 Msa1416590:CDS
ACAGGTTCACAGATAGCTCC+AGG 0.568791 tig0024372:-52978 None:intergenic
TCTGATAATGAAGAAACGAC+TGG 0.568882 tig0024372:-50249 None:intergenic
ATTTAACCACAGATGAAGGA+TGG 0.568911 tig0024372:+49764 Msa1416590:CDS
GAGAAGTTATACAAATACAT+TGG 0.571158 tig0024372:+50381 Msa1416590:CDS
ATAACACAGTTCAAAACTGA+TGG 0.572477 tig0024372:-52844 None:intergenic
TACCAACCCTGATTGGAAGA+AGG 0.572792 tig0024372:+52378 Msa1416590:CDS
GGGGTTTCGGGAAGATGAAG+AGG 0.574598 tig0024372:-49052 None:intergenic
AAATACAATCCGTGTTCACA+GGG 0.575360 tig0024372:-49687 None:intergenic
ATTACTAATGTAGAGAGTGA+AGG 0.576126 tig0024372:-52794 None:intergenic
TTCAGGAATAACAGGAGGGA+TGG 0.577523 tig0024372:+52442 Msa1416590:three_prime_UTR
ATATTGAGAATCAATTTACA+AGG 0.578147 tig0024372:+49322 Msa1416590:CDS
TGAGGGATTTGTGAATGTGA+GGG 0.580001 tig0024372:-49072 None:intergenic
GCTAGTGATAAGATTATCAC+GGG 0.582665 tig0024372:+49949 Msa1416590:CDS
ACAGCTCCTTCTTCCAATCA+GGG 0.583747 tig0024372:-52384 None:intergenic
GTGGTTGACGAGATTGCCCA+AGG 0.585641 tig0024372:+50570 Msa1416590:CDS
AATTATTTGAGGCTGATCAT+CGG 0.586001 tig0024372:+50445 Msa1416590:CDS
TTGACGAGATTGCCCAAGGG+CGG 0.586860 tig0024372:+50574 Msa1416590:CDS
ATCCTCCGGATTGACAGTCC+AGG 0.587117 tig0024372:+50165 Msa1416590:CDS
TATTGATAGCCCTGTGAACA+CGG 0.587964 tig0024372:+49678 Msa1416590:CDS
CATATGTTGGTTGACGCGCT+TGG 0.589554 tig0024372:+50624 Msa1416590:CDS
AAGAGCTTGCTTTAACAGAA+GGG 0.590552 tig0024372:-52691 None:intergenic
CGATTCCCATCCTTCATCTG+TGG 0.594942 tig0024372:-49770 None:intergenic
TGGATGCTGTATGCCTTCAA+AGG 0.595183 tig0024372:+52296 Msa1416590:CDS
GGCGGCACTGAACCATATGT+TGG 0.595357 tig0024372:+50611 Msa1416590:CDS
GGCTAGTGATAAGATTATCA+CGG 0.596190 tig0024372:+49948 Msa1416590:CDS
GGTTAAGACTCTGTTAGCCT+CGG 0.596334 tig0024372:+49279 Msa1416590:CDS
AATATTTCCGATGGACCAGT+TGG 0.597583 tig0024372:+49346 Msa1416590:CDS
TCTGGAGAATCATCCGGAGG+GGG 0.598601 tig0024372:-49649 None:intergenic
TTTAACCACAGATGAAGGAT+GGG 0.605296 tig0024372:+49765 Msa1416590:CDS
TTGAGGGATTTGTGAATGTG+AGG 0.606072 tig0024372:-49073 None:intergenic
GAGGGATTTGTGAATGTGAG+GGG 0.607039 tig0024372:-49071 None:intergenic
CTTTGTGGGCAAGGTAGCGA+CGG 0.609032 tig0024372:+50527 Msa1416590:CDS
CTCCTGGACTGTCAATCCGG+AGG 0.612922 tig0024372:-50167 None:intergenic
CAGATCGTTAAGTGTAGATG+TGG 0.613543 tig0024372:+50551 Msa1416590:CDS
TGTTGGTATGTCAAATGGCA+GGG 0.616785 tig0024372:+50035 Msa1416590:CDS
AATTTCTTGAAGCCAGAATG+CGG 0.621440 tig0024372:-49247 None:intergenic
TTCAAAAGTTGACAGAGTGA+AGG 0.622058 tig0024372:-52877 None:intergenic
TGCTGCAACACGGTCCACAA+TGG 0.622831 tig0024372:-49122 None:intergenic
TATCTGGAGAATCATCCGGA+GGG 0.623341 tig0024372:-49651 None:intergenic
TCAAATGGCAGGGAAAAGAT+CGG 0.628546 tig0024372:+50045 Msa1416590:CDS
AAGGAGGTTCTTCACAGAGG+TGG 0.630578 tig0024372:+50411 Msa1416590:CDS
GAAGATGAAAACACTAACGT+TGG 0.631994 tig0024372:-49166 None:intergenic
ATGATCCGCTCATCTTCATG+TGG 0.633308 tig0024372:-50477 None:intergenic
ATCTGGAGAATCATCCGGAG+GGG 0.638622 tig0024372:-49650 None:intergenic
TTATCAGACAAGGCAACTAG+TGG 0.639169 tig0024372:+50264 Msa1416590:CDS
GTGCATTCAGGAATAACAGG+AGG 0.649237 tig0024372:+52437 Msa1416590:three_prime_UTR
CCTGAATGCACATCAACCAA+TGG 0.649333 tig0024372:-52425 None:intergenic
ATAATAAACTCAACTCACAC+AGG 0.658801 tig0024372:-52996 None:intergenic
GTATCTGGAGAATCATCCGG+AGG 0.659830 tig0024372:-49652 None:intergenic
ATTTGATTGAGATTATCCGT+GGG 0.666741 tig0024372:+50112 Msa1416590:CDS
AGAAACACAGCGGACACACG+AGG 0.666748 tig0024372:-49433 None:intergenic
TGCATTCAGGAATAACAGGA+GGG 0.668569 tig0024372:+52438 Msa1416590:three_prime_UTR
TTTCGGGAAGATGAAGAGGA+TGG 0.668798 tig0024372:-49048 None:intergenic
TCATGCCACATGAAGATGAG+CGG 0.671782 tig0024372:+50472 Msa1416590:CDS
AAGAAGGAGGTTCTTCACAG+AGG 0.681303 tig0024372:+50408 Msa1416590:CDS
CTCCGGATTGACAGTCCAGG+AGG 0.681617 tig0024372:+50168 Msa1416590:CDS
TGGTTGACGAGATTGCCCAA+GGG 0.693802 tig0024372:+50571 Msa1416590:CDS
GAAGTAAAGATGCTGCAACA+CGG 0.695209 tig0024372:-49132 None:intergenic
TCCATGTTCCACATGCTCCG+AGG 0.700945 tig0024372:-49296 None:intergenic
CTTTAAGGGAAGCCTAACAG+TGG 0.711846 tig0024372:-52742 None:intergenic
TATGCTTTGAAATCGAGCAG+TGG 0.712517 tig0024372:-49991 None:intergenic
TGGAAATGGAAGATAGTGTG+CGG 0.715103 tig0024372:-49102 None:intergenic
TGAAGTGCAGTATAGGACAG+CGG 0.718438 tig0024372:+49723 Msa1416590:CDS
AACTATATTAAGAAACACAG+CGG 0.726464 tig0024372:-49443 None:intergenic
AAGTGCAGTATAGGACAGCG+GGG 0.749747 tig0024372:+49725 Msa1416590:CDS
TTTGATTGAGATTATCCGTG+GGG 0.755479 tig0024372:+50113 Msa1416590:CDS
GGACACACGAGGATCAAATG+CGG 0.763717 tig0024372:-49422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCAAATTTTAAAAAATC+TGG + tig0024372:49511-49530 Msa1416590:CDS 10.0%
!!! AATATAGTTGATTTTTATTG+TGG + tig0024372:49457-49476 Msa1416590:CDS 15.0%
!!! TTTTAAAAAATCTGGTAAAA+AGG + tig0024372:49519-49538 Msa1416590:CDS 15.0%
!! ATATTGAGAATCAATTTACA+AGG + tig0024372:49322-49341 Msa1416590:CDS 20.0%
!!! TAAAAAGGTTATAGCTTTTA+TGG + tig0024372:49534-49553 Msa1416590:CDS 20.0%
!! TAAATATGCAGAATTATTTG+AGG + tig0024372:50434-50453 Msa1416590:CDS 20.0%
!!! ACTATTTTTCTTTCTTTTAC+TGG + tig0024372:50761-50780 Msa1416590:intron 20.0%
!! GAAAAAAACCTTACAAAATT+GGG - tig0024372:50895-50914 None:intergenic 20.0%
!! AGAAAAAAACCTTACAAAAT+TGG - tig0024372:50896-50915 None:intergenic 20.0%
!!! TTTGTAAGGTTTTTTTCTTT+TGG + tig0024372:50898-50917 Msa1416590:intron 20.0%
!! AATTTAATATTCTTCCTTCA+AGG + tig0024372:51244-51263 Msa1416590:intron 20.0%
!!! ATTTTCTTTGAGAACTAAAA+AGG + tig0024372:51354-51373 Msa1416590:intron 20.0%
!!! TTTTTAAAGTAATTAGCGTA+TGG - tig0024372:51561-51580 None:intergenic 20.0%
!!! AATTTTCTAAAATCAAGGAA+TGG - tig0024372:52186-52205 None:intergenic 20.0%
!!! ATTCCTTGATTTTAGAAAAT+TGG + tig0024372:52185-52204 Msa1416590:intron 20.0%
!!! TAAGTCTAAAATTTACAAAC+CGG - tig0024372:52243-52262 None:intergenic 20.0%
!!! GTTTGTAAATTTTAGACTTA+TGG + tig0024372:52243-52262 Msa1416590:intron 20.0%
! CTTCAAGAAATTTATTGTGA+AGG + tig0024372:49258-49277 Msa1416590:CDS 25.0%
! AACTATATTAAGAAACACAG+CGG - tig0024372:49446-49465 None:intergenic 25.0%
!!! TAGTTGATTTTTATTGTGGT+TGG + tig0024372:49461-49480 Msa1416590:CDS 25.0%
!!! AGTTGATTTTTATTGTGGTT+GGG + tig0024372:49462-49481 Msa1416590:CDS 25.0%
! TAGAAAATTGGATAGATTGT+AGG + tig0024372:49908-49927 Msa1416590:CDS 25.0%
! GAGAAGTTATACAAATACAT+TGG + tig0024372:50381-50400 Msa1416590:CDS 25.0%
!!! CAAATACATTGGTTTTAAGA+AGG + tig0024372:50392-50411 Msa1416590:CDS 25.0%
!! AGATTAATAGGTCTATTTTG+AGG - tig0024372:50696-50715 None:intergenic 25.0%
! TCAAAATAGACCTATTAATC+TGG + tig0024372:50695-50714 Msa1416590:CDS 25.0%
!!! AACTTTTTCCCAATTTTGTA+AGG + tig0024372:50884-50903 Msa1416590:intron 25.0%
! GGGAAAAAACAAACAAAAAA+GGG - tig0024372:51073-51092 None:intergenic 25.0%
! AAAAACAGAGAATTCAAAAC+AGG - tig0024372:51796-51815 None:intergenic 25.0%
!!! TTACCAGTAATTTTTTTGCT+AGG + tig0024372:52131-52150 Msa1416590:intron 25.0%
! AATCCTAGCAAAAAAATTAC+TGG - tig0024372:52137-52156 None:intergenic 25.0%
!!! AGTAATTTTTTTGCTAGGAT+TGG + tig0024372:52136-52155 Msa1416590:intron 25.0%
!!! GAACCAATTTTCTAAAATCA+AGG - tig0024372:52191-52210 None:intergenic 25.0%
! TGCAGAAAAAAGAAAACAAA+TGG - tig0024372:52273-52292 None:intergenic 25.0%
! TATTAGCATGTAGATGATTT+AGG + tig0024372:52500-52519 Msa1416590:three_prime_UTR 25.0%
! AACTAGCATATAAAACCAAA+TGG - tig0024372:52526-52545 None:intergenic 25.0%
!!! TATATGCTAGTTTTTTAGTG+TGG + tig0024372:52534-52553 Msa1416590:three_prime_UTR 25.0%
!!! ATATGCTAGTTTTTTAGTGT+GGG + tig0024372:52535-52554 Msa1416590:three_prime_UTR 25.0%
TTACAAGGAAATATTTCCGA+TGG + tig0024372:49337-49356 Msa1416590:CDS 30.0%
! TAGCTTTTATGGCTTCATTT+TGG + tig0024372:49545-49564 Msa1416590:CDS 30.0%
AGGATGATATAAGATGTAAC+TGG + tig0024372:49806-49825 Msa1416590:CDS 30.0%
TTGTTATGGTTTCTTCTTCA+AGG + tig0024372:49830-49849 Msa1416590:CDS 30.0%
TTCAAGGAAAATAAGAGAAG+AGG + tig0024372:49846-49865 Msa1416590:CDS 30.0%
!!! GAGGAGATTCTAACTTTTTT+TGG + tig0024372:49865-49884 Msa1416590:CDS 30.0%
!!! TCTAACTTTTTTTGGTAGTG+AGG + tig0024372:49873-49892 Msa1416590:CDS 30.0%
ATTGTCGTGAAGTAGAAAAT+TGG + tig0024372:49896-49915 Msa1416590:CDS 30.0%
! ATAGATTGTAGGTTACTTTC+AGG + tig0024372:49919-49938 Msa1416590:CDS 30.0%
! TAGATTGTAGGTTACTTTCA+GGG + tig0024372:49920-49939 Msa1416590:CDS 30.0%
CAAGTTAAAAAATGCACTGT+TGG + tig0024372:50018-50037 Msa1416590:CDS 30.0%
ATTTGATTGAGATTATCCGT+GGG + tig0024372:50112-50131 Msa1416590:CDS 30.0%
!! TTTTGTTGGCTGATCAATTA+TGG + tig0024372:50196-50215 Msa1416590:CDS 30.0%
CTCACTTATACATGTCAAAT+TGG + tig0024372:50333-50352 Msa1416590:CDS 30.0%
TTGTATAACTTCTCAGTGTT+TGG - tig0024372:50375-50394 None:intergenic 30.0%
!!! ATACATTGGTTTTAAGAAGG+AGG + tig0024372:50395-50414 Msa1416590:CDS 30.0%
! AATTATTTGAGGCTGATCAT+CGG + tig0024372:50445-50464 Msa1416590:CDS 30.0%
AGAAGTTTACAAAGTCTTTG+TGG + tig0024372:50512-50531 Msa1416590:CDS 30.0%
GAAGTTTACAAAGTCTTTGT+GGG + tig0024372:50513-50532 Msa1416590:CDS 30.0%
!! AGGTATATTAGCCTTCAATT+TGG - tig0024372:50676-50695 None:intergenic 30.0%
!! TTTTACTGGTTGAACTCTTT+GGG + tig0024372:50775-50794 Msa1416590:intron 30.0%
!!! TATGTTTTTTTGCCGAAAAG+TGG + tig0024372:50802-50821 Msa1416590:intron 30.0%
!! TGCATTAAAAGTCCACTTTT+CGG - tig0024372:50817-50836 None:intergenic 30.0%
!!! GGTTTTTTTCTTTTGGAAAG+TGG + tig0024372:50905-50924 Msa1416590:intron 30.0%
! GACTTTTACATTGGATAGTT+TGG + tig0024372:50927-50946 Msa1416590:intron 30.0%
ACGTTCTACAAATGATTCAT+TGG - tig0024372:51042-51061 None:intergenic 30.0%
GGGGAAAAAACAAACAAAAA+AGG - tig0024372:51074-51093 None:intergenic 30.0%
! AAGCAAAGAGAATTCAAGTT+TGG - tig0024372:51196-51215 None:intergenic 30.0%
TTCTCTTTGCTTTGCAATAT+TGG + tig0024372:51204-51223 Msa1416590:intron 30.0%
TTGAATGAGATTTCAACAAG+TGG + tig0024372:51294-51313 Msa1416590:intron 30.0%
TGAATGAGATTTCAACAAGT+GGG + tig0024372:51295-51314 Msa1416590:intron 30.0%
AATAAATGCAAACAAGAGCT+TGG - tig0024372:51448-51467 None:intergenic 30.0%
! AGCTCTTGTTTGCATTTATT+TGG + tig0024372:51448-51467 Msa1416590:intron 30.0%
GACTTAAACATTCTCAAAAC+TGG - tig0024372:51492-51511 None:intergenic 30.0%
! AGTTTTTGTATGACACATAC+CGG + tig0024372:51722-51741 Msa1416590:intron 30.0%
TGACATAACACTATAATGAC+CGG - tig0024372:51744-51763 None:intergenic 30.0%
! TTTTATGCTCAACTTGTACA+TGG + tig0024372:51815-51834 Msa1416590:intron 30.0%
! AGGGATACACAAATTTTACA+TGG - tig0024372:51929-51948 None:intergenic 30.0%
!! ATGGATTAGTTAGGAATAGA+GGG - tig0024372:51948-51967 None:intergenic 30.0%
TATTCCTAACTAATCCATGA+AGG + tig0024372:51950-51969 Msa1416590:intron 30.0%
AATGATATTGTCAACCTTCA+TGG - tig0024372:51967-51986 None:intergenic 30.0%
! GCATTGACACTTAAATTGAA+TGG - tig0024372:52065-52084 None:intergenic 30.0%
! ACTGTTTGATGTATTTCTGT+CGG + tig0024372:52214-52233 Msa1416590:intron 30.0%
AAGTAAAGATCGATGACAAT+AGG - tig0024372:52641-52660 None:intergenic 30.0%
TACTTAGACATGACTTAGTT+TGG + tig0024372:52656-52675 Msa1416590:three_prime_UTR 30.0%
ATTACTAATGTAGAGAGTGA+AGG - tig0024372:52797-52816 None:intergenic 30.0%
ATAACACAGTTCAAAACTGA+TGG - tig0024372:52847-52866 None:intergenic 30.0%
GATAGGCAAAATCACATTAT+AGG - tig0024372:52903-52922 None:intergenic 30.0%
CATCACTGTTCAAATTTGAT+AGG - tig0024372:52920-52939 None:intergenic 30.0%
TATGTTTGTGCATTATTGTC+TGG + tig0024372:52941-52960 Msa1416590:three_prime_UTR 30.0%
ATAATAAACTCAACTCACAC+AGG - tig0024372:52999-53018 None:intergenic 30.0%
! GTTGTTTGAGATGAAGATGA+AGG - tig0024372:49023-49042 None:intergenic 35.0%
ACTATCTTCCATTTCCATTG+TGG + tig0024372:49108-49127 Msa1416590:CDS 35.0%
GAAGATGAAAACACTAACGT+TGG - tig0024372:49169-49188 None:intergenic 35.0%
! TTTTCATCTTCTTCCACTTC+AGG + tig0024372:49178-49197 Msa1416590:CDS 35.0%
AATTTCTTGAAGCCAGAATG+CGG - tig0024372:49250-49269 None:intergenic 35.0%
! ATAAGGTTTTCACTTAGCTG+AGG - tig0024372:49397-49416 None:intergenic 35.0%
CTATCTTCACACCATAATAC+AGG - tig0024372:49580-49599 None:intergenic 35.0%
AAATACAATCCGTGTTCACA+GGG - tig0024372:49690-49709 None:intergenic 35.0%
TAAATACAATCCGTGTTCAC+AGG - tig0024372:49691-49710 None:intergenic 35.0%
ATCTTGTTGAAGTGCAGTAT+AGG + tig0024372:49716-49735 Msa1416590:CDS 35.0%
ATTTAACCACAGATGAAGGA+TGG + tig0024372:49764-49783 Msa1416590:CDS 35.0%
TTTAACCACAGATGAAGGAT+GGG + tig0024372:49765-49784 Msa1416590:CDS 35.0%
!! AAGATGTAACTGGCTTGTTA+TGG + tig0024372:49816-49835 Msa1416590:CDS 35.0%
GGCTAGTGATAAGATTATCA+CGG + tig0024372:49948-49967 Msa1416590:CDS 35.0%
GCTAGTGATAAGATTATCAC+GGG + tig0024372:49949-49968 Msa1416590:CDS 35.0%
!! ATCGGTGTTATTAGAGTTTG+TGG + tig0024372:50063-50082 Msa1416590:CDS 35.0%
ATGAATTGCACCTTCATTGT+GGG - tig0024372:50091-50110 None:intergenic 35.0%
GATTTGATTGAGATTATCCG+TGG + tig0024372:50111-50130 Msa1416590:CDS 35.0%
TTTGATTGAGATTATCCGTG+GGG + tig0024372:50113-50132 Msa1416590:CDS 35.0%
TGGGTCATCAAAAAGTTTGA+AGG + tig0024372:50137-50156 Msa1416590:CDS 35.0%
! TCTGATAATGAAGAAACGAC+TGG - tig0024372:50252-50271 None:intergenic 35.0%
CGTTTCTTCATTATCAGACA+AGG + tig0024372:50254-50273 Msa1416590:CDS 35.0%
AAGATGAGCGGATCATAAAT+GGG + tig0024372:50484-50503 Msa1416590:CDS 35.0%
TGTTGCTATAGCCAAATTGA+AGG + tig0024372:50662-50681 Msa1416590:CDS 35.0%
GAGAGTTCAACCAGATTAAT+AGG - tig0024372:50708-50727 None:intergenic 35.0%
! CGTAATTTGAGGTTTAAACG+AGG + tig0024372:50730-50749 Msa1416590:intron 35.0%
!! CTTTTACTGGTTGAACTCTT+TGG + tig0024372:50774-50793 Msa1416590:intron 35.0%
!! TGGAAAGTGGACTTTTACAT+TGG + tig0024372:50918-50937 Msa1416590:intron 35.0%
TTGGATAGTTTGGATAGTCA+TGG + tig0024372:50937-50956 Msa1416590:intron 35.0%
!!! GTTTGTTTTTTCCCCTTTTC+TGG + tig0024372:51079-51098 Msa1416590:intron 35.0%
!! GTGATCAAATTTTAGTCCAG+CGG - tig0024372:51114-51133 None:intergenic 35.0%
AGTAACAAGTGCTTAGTTGT+TGG - tig0024372:51160-51179 None:intergenic 35.0%
TCTTTGCTTTGCAATATTGG+TGG + tig0024372:51207-51226 Msa1416590:intron 35.0%
! GCAATATTGGTGGTATCTAA+TGG + tig0024372:51217-51236 Msa1416590:intron 35.0%
AATATTCTTCCTTCAAGGAC+AGG + tig0024372:51249-51268 Msa1416590:intron 35.0%
TCCAAATAACACTGCACTAT+CGG - tig0024372:51601-51620 None:intergenic 35.0%
TATGTACGTGAAGAATCGTT+TGG - tig0024372:51657-51676 None:intergenic 35.0%
! CGCTAACTGATTAACTTGAT+AGG + tig0024372:51685-51704 Msa1416590:intron 35.0%
GATTCTCTCATATTCCATGT+AGG + tig0024372:51891-51910 Msa1416590:intron 35.0%
!! CATGGATTAGTTAGGAATAG+AGG - tig0024372:51949-51968 None:intergenic 35.0%
!! TCAACCTTCATGGATTAGTT+AGG - tig0024372:51957-51976 None:intergenic 35.0%
GGAATGGCATTAGTAGTTTA+CGG - tig0024372:52170-52189 None:intergenic 35.0%
! GTTTTCTTTTTTCTGCAGTC+TGG + tig0024372:52276-52295 Msa1416590:intron 35.0%
GTAAAACAACAGTCCTTTGA+AGG - tig0024372:52312-52331 None:intergenic 35.0%
CTTATCAGAACACAACAAAC+TGG + tig0024372:52331-52350 Msa1416590:CDS 35.0%
TTGGTATAAGTACCCATTTC+CGG - tig0024372:52364-52383 None:intergenic 35.0%
TGTAGATGATTTAGGCCATT+TGG + tig0024372:52508-52527 Msa1416590:three_prime_UTR 35.0%
CTCAAAACAGTATCAAATCC+AGG - tig0024372:52570-52589 None:intergenic 35.0%
! AAGAGCTTGCTTTAACAGAA+GGG - tig0024372:52694-52713 None:intergenic 35.0%
! GTTGACATTTTACCACTGTT+AGG + tig0024372:52730-52749 Msa1416590:three_prime_UTR 35.0%
TTCAAAAGTTGACAGAGTGA+AGG - tig0024372:52880-52899 None:intergenic 35.0%
TTTGTGAATGTGAGGGGTTT+CGG - tig0024372:49068-49087 None:intergenic 40.0%
TGAGGGATTTGTGAATGTGA+GGG - tig0024372:49075-49094 None:intergenic 40.0%
TTGAGGGATTTGTGAATGTG+AGG - tig0024372:49076-49095 None:intergenic 40.0%
TAGTGTGCGGTAGAATTTGA+GGG - tig0024372:49092-49111 None:intergenic 40.0%
ATAGTGTGCGGTAGAATTTG+AGG - tig0024372:49093-49112 None:intergenic 40.0%
TGGAAATGGAAGATAGTGTG+CGG - tig0024372:49105-49124 None:intergenic 40.0%
GAAGTAAAGATGCTGCAACA+CGG - tig0024372:49135-49154 None:intergenic 40.0%
!! ACTAACGTTGGTTCTTGAGT+AGG - tig0024372:49157-49176 None:intergenic 40.0%
TCTTCTTCCACTTCAGGTAA+TGG + tig0024372:49184-49203 Msa1416590:CDS 40.0%
! TCCACTTCAGGTAATGGTAA+CGG + tig0024372:49190-49209 Msa1416590:CDS 40.0%
!!! TAACGGTGTTGATTTTCCCA+AGG + tig0024372:49207-49226 Msa1416590:CDS 40.0%
!!! AACGGTGTTGATTTTCCCAA+GGG + tig0024372:49208-49227 Msa1416590:CDS 40.0%
ACGAAATCAAACTCACCCTT+GGG - tig0024372:49226-49245 None:intergenic 40.0%
ATTTCTTGAAGCCAGAATGC+GGG - tig0024372:49249-49268 None:intergenic 40.0%
AATATTTCCGATGGACCAGT+TGG + tig0024372:49346-49365 Msa1416590:CDS 40.0%
GATCAAATGCGGCTTTCATA+AGG - tig0024372:49414-49433 None:intergenic 40.0%
!!! GGAGTTTTGAGCCTGTATTA+TGG + tig0024372:49566-49585 Msa1416590:CDS 40.0%
CTTGTATCTGGAGAATCATC+CGG - tig0024372:49658-49677 None:intergenic 40.0%
GGGCTATCAATACTTGTATC+TGG - tig0024372:49670-49689 None:intergenic 40.0%
! TATTGATAGCCCTGTGAACA+CGG + tig0024372:49678-49697 Msa1416590:CDS 40.0%
GGACATTTAACCACAGATGA+AGG + tig0024372:49760-49779 Msa1416590:CDS 40.0%
! TAGGTTACTTTCAGGGTTGA+TGG + tig0024372:49927-49946 Msa1416590:CDS 40.0%
!! TATGCTTTGAAATCGAGCAG+TGG - tig0024372:49994-50013 None:intergenic 40.0%
TGCACTGTTGGTATGTCAAA+TGG + tig0024372:50030-50049 Msa1416590:CDS 40.0%
TGTTGGTATGTCAAATGGCA+GGG + tig0024372:50035-50054 Msa1416590:CDS 40.0%
TCAAATGGCAGGGAAAAGAT+CGG + tig0024372:50045-50064 Msa1416590:CDS 40.0%
CATGAATTGCACCTTCATTG+TGG - tig0024372:50092-50111 None:intergenic 40.0%
! TCCAGGAGGAGAATTTTTGT+TGG + tig0024372:50182-50201 Msa1416590:CDS 40.0%
TTATCAGACAAGGCAACTAG+TGG + tig0024372:50264-50283 Msa1416590:CDS 40.0%
GGTGCATATTTGATTGCAAC+TGG + tig0024372:50285-50304 Msa1416590:CDS 40.0%
TATTTGATTGCAACTGGAGC+AGG + tig0024372:50291-50310 Msa1416590:CDS 40.0%
TCATCTTCATGTGGCATGAT+TGG - tig0024372:50471-50490 None:intergenic 40.0%
GAAGATGAGCGGATCATAAA+TGG + tig0024372:50483-50502 Msa1416590:CDS 40.0%
TTACAAAGTCTTTGTGGGCA+AGG + tig0024372:50518-50537 Msa1416590:CDS 40.0%
CACATCTACACTTAACGATC+TGG - tig0024372:50553-50572 None:intergenic 40.0%
CAGATCGTTAAGTGTAGATG+TGG + tig0024372:50551-50570 Msa1416590:CDS 40.0%
TGAACTCTCTGCGTAATTTG+AGG + tig0024372:50719-50738 Msa1416590:intron 40.0%
TGGTTTCTTGCTGAAAAGTG+TGG + tig0024372:50957-50976 Msa1416590:intron 40.0%
AAGTGCTTAGTTGTTGGCAA+AGG - tig0024372:51154-51173 None:intergenic 40.0%
TGTTAATGTCCTGTCCTTGA+AGG - tig0024372:51261-51280 None:intergenic 40.0%
ATGCAAACAAGAGCTTGGAA+AGG - tig0024372:51443-51462 None:intergenic 40.0%
! GCATTTATTTGGCTCACACA+TGG + tig0024372:51459-51478 Msa1416590:intron 40.0%
CAGCATGTAGCTGATATATC+TGG + tig0024372:51525-51544 Msa1416590:intron 40.0%
! TCCGATAGTGCAGTGTTATT+TGG + tig0024372:51597-51616 Msa1416590:intron 40.0%
TGGTATAAGTACCCATTTCC+GGG - tig0024372:52363-52382 None:intergenic 40.0%
GTACTTATACCAACCCTGAT+TGG + tig0024372:52371-52390 Msa1416590:CDS 40.0%
TCAACATCAGTGTACTCCAT+TGG + tig0024372:52409-52428 Msa1416590:CDS 40.0%
GATGTGCATTCAGGAATAAC+AGG + tig0024372:52434-52453 Msa1416590:exon 40.0%
TGCATTCAGGAATAACAGGA+GGG + tig0024372:52438-52457 Msa1416590:three_prime_UTR 40.0%
! TAGTGTGGGTTTTTATGTCC+TGG + tig0024372:52549-52568 Msa1416590:three_prime_UTR 40.0%
! GCTTGACTCTGCTGTTTAAA+TGG + tig0024372:52594-52613 Msa1416590:three_prime_UTR 40.0%
! ATGACTTAGTTTGGCCAAAC+TGG + tig0024372:52665-52684 Msa1416590:three_prime_UTR 40.0%
! CAAGAGCTTGCTTTAACAGA+AGG - tig0024372:52695-52714 None:intergenic 40.0%
CTTCTGTTAAAGCAAGCTCT+TGG + tig0024372:52693-52712 Msa1416590:three_prime_UTR 40.0%
! GTGCTAAGAGCTTGCTTTAA+GGG - tig0024372:52759-52778 None:intergenic 40.0%
! TGTGCTAAGAGCTTGCTTTA+AGG - tig0024372:52760-52779 None:intergenic 40.0%
TTTCGGGAAGATGAAGAGGA+TGG - tig0024372:49051-49070 None:intergenic 45.0%
TTGTGAATGTGAGGGGTTTC+GGG - tig0024372:49067-49086 None:intergenic 45.0%
GAGGGATTTGTGAATGTGAG+GGG - tig0024372:49074-49093 None:intergenic 45.0%
AACACGGTCCACAATGGAAA+TGG - tig0024372:49119-49138 None:intergenic 45.0%
ACCGTTACCATTACCTGAAG+TGG - tig0024372:49194-49213 None:intergenic 45.0%
GACGAAATCAAACTCACCCT+TGG - tig0024372:49227-49246 None:intergenic 45.0%
! TTTGATTTCGTCCCGCATTC+TGG + tig0024372:49235-49254 Msa1416590:CDS 45.0%
! GGTTAAGACTCTGTTAGCCT+CGG + tig0024372:49279-49298 Msa1416590:CDS 45.0%
TATCTGGAGAATCATCCGGA+GGG - tig0024372:49654-49673 None:intergenic 45.0%
TGAAGTGCAGTATAGGACAG+CGG + tig0024372:49723-49742 Msa1416590:CDS 45.0%
ACAGCGGGGAAATACAAATC+TGG + tig0024372:49739-49758 Msa1416590:CDS 45.0%
TGAAGGATGGGAATCGATGA+AGG + tig0024372:49777-49796 Msa1416590:CDS 45.0%
GGAATCGATGAAGGCAGTTA+AGG + tig0024372:49786-49805 Msa1416590:CDS 45.0%
AGATTATCACGGGTCTCAGT+AGG + tig0024372:49959-49978 Msa1416590:CDS 45.0%
CTGTTGGTATGTCAAATGGC+AGG + tig0024372:50034-50053 Msa1416590:CDS 45.0%
GTTTGTGGATCCCACAATGA+AGG + tig0024372:50078-50097 Msa1416590:CDS 45.0%
GTTTGAAGGCTGTAATCCTC+CGG + tig0024372:50151-50170 Msa1416590:CDS 45.0%
GCCAACAAAAATTCTCCTCC+TGG - tig0024372:50186-50205 None:intergenic 45.0%
AAGAAGGAGGTTCTTCACAG+AGG + tig0024372:50408-50427 Msa1416590:CDS 45.0%
TCATGCCACATGAAGATGAG+CGG + tig0024372:50472-50491 Msa1416590:CDS 45.0%
ATGATCCGCTCATCTTCATG+TGG - tig0024372:50480-50499 None:intergenic 45.0%
GTTAATCAGTTAGCGCACTC+AGG - tig0024372:51680-51699 None:intergenic 45.0%
GGTGATATTGTCGACCTACA+TGG - tig0024372:51908-51927 None:intergenic 45.0%
!! GATGTATTTCTGTCGGCTTC+CGG + tig0024372:52221-52240 Msa1416590:intron 45.0%
TGGATGCTGTATGCCTTCAA+AGG + tig0024372:52296-52315 Msa1416590:CDS 45.0%
ACAACAAACTGGACAAAGCC+CGG + tig0024372:52342-52361 Msa1416590:CDS 45.0%
TACCAACCCTGATTGGAAGA+AGG + tig0024372:52378-52397 Msa1416590:CDS 45.0%
ACAGCTCCTTCTTCCAATCA+GGG - tig0024372:52387-52406 None:intergenic 45.0%
AACAGCTCCTTCTTCCAATC+AGG - tig0024372:52388-52407 None:intergenic 45.0%
CCTGAATGCACATCAACCAA+TGG - tig0024372:52428-52447 None:intergenic 45.0%
! CCATTGGTTGATGTGCATTC+AGG + tig0024372:52425-52444 Msa1416590:exon 45.0%
GTGCATTCAGGAATAACAGG+AGG + tig0024372:52437-52456 Msa1416590:three_prime_UTR 45.0%
TTCAGGAATAACAGGAGGGA+TGG + tig0024372:52442-52461 Msa1416590:three_prime_UTR 45.0%
TAACAGAAGGGAAGCCAGTT+TGG - tig0024372:52682-52701 None:intergenic 45.0%
! CTTTAAGGGAAGCCTAACAG+TGG - tig0024372:52745-52764 None:intergenic 45.0%
!! CTGGTATGCTTTGTTTGTCC+TGG + tig0024372:52960-52979 Msa1416590:three_prime_UTR 45.0%
!!! TCTTATAAATTTAATTTAAT+CGG - tig0024372:50855-50874 None:intergenic 5.0%
!! ACCAGTTGGCACTGACTCTA+AGG + tig0024372:49360-49379 Msa1416590:CDS 50.0%
ACCTTAGAGTCAGTGCCAAC+TGG - tig0024372:49364-49383 None:intergenic 50.0%
GGACACACGAGGATCAAATG+CGG - tig0024372:49425-49444 None:intergenic 50.0%
ATCTGGAGAATCATCCGGAG+GGG - tig0024372:49653-49672 None:intergenic 50.0%
GTATCTGGAGAATCATCCGG+AGG - tig0024372:49655-49674 None:intergenic 50.0%
GAAGTGCAGTATAGGACAGC+GGG + tig0024372:49724-49743 Msa1416590:CDS 50.0%
AAGTGCAGTATAGGACAGCG+GGG + tig0024372:49725-49744 Msa1416590:CDS 50.0%
CGATTCCCATCCTTCATCTG+TGG - tig0024372:49773-49792 None:intergenic 50.0%
ACGGGTCTCAGTAGGAGATT+TGG + tig0024372:49967-49986 Msa1416590:CDS 50.0%
ATTGAGATTATCCGTGGGGC+TGG + tig0024372:50117-50136 Msa1416590:CDS 50.0%
TTGAGATTATCCGTGGGGCT+GGG + tig0024372:50118-50137 Msa1416590:CDS 50.0%
!! TTTTTGATGACCCAGCCCCA+CGG - tig0024372:50131-50150 None:intergenic 50.0%
AAGGAGGTTCTTCACAGAGG+TGG + tig0024372:50411-50430 Msa1416590:CDS 50.0%
TGGTTGACGAGATTGCCCAA+GGG + tig0024372:50571-50590 Msa1416590:CDS 50.0%
CAAGCGCGTCAACCAACATA+TGG - tig0024372:50626-50645 None:intergenic 50.0%
! CATATGTTGGTTGACGCGCT+TGG + tig0024372:50624-50643 Msa1416590:CDS 50.0%
GGCACTAGCATCCAGAAAAG+GGG - tig0024372:51093-51112 None:intergenic 50.0%
CGGCACTAGCATCCAGAAAA+GGG - tig0024372:51094-51113 None:intergenic 50.0%
ACTTCAGTCCCCTGTGCTTA+AGG + tig0024372:52090-52109 Msa1416590:intron 50.0%
AACCTCTGCCTTAAGCACAG+GGG - tig0024372:52101-52120 None:intergenic 50.0%
GAACCTCTGCCTTAAGCACA+GGG - tig0024372:52102-52121 None:intergenic 50.0%
AGAACCTCTGCCTTAAGCAC+AGG - tig0024372:52103-52122 None:intergenic 50.0%
AACTGGACAAAGCCCGGAAA+TGG + tig0024372:52348-52367 Msa1416590:CDS 50.0%
ACTGGACAAAGCCCGGAAAT+GGG + tig0024372:52349-52368 Msa1416590:CDS 50.0%
CTCCTTCTTCCAATCAGGGT+TGG - tig0024372:52383-52402 None:intergenic 50.0%
ACAGGTTCACAGATAGCTCC+AGG - tig0024372:52981-53000 None:intergenic 50.0%
GGGGTTTCGGGAAGATGAAG+AGG - tig0024372:49055-49074 None:intergenic 55.0%
TGCTGCAACACGGTCCACAA+TGG - tig0024372:49125-49144 None:intergenic 55.0%
! TCTGTTAGCCTCGGAGCATG+TGG + tig0024372:49288-49307 Msa1416590:CDS 55.0%
TCCATGTTCCACATGCTCCG+AGG - tig0024372:49299-49318 None:intergenic 55.0%
GTCAGTGCCAACTGGTCCAT+CGG - tig0024372:49356-49375 None:intergenic 55.0%
AGAAACACAGCGGACACACG+AGG - tig0024372:49436-49455 None:intergenic 55.0%
! GAATCATCCGGAGGGGGTTT+TGG - tig0024372:49646-49665 None:intergenic 55.0%
TCTGGAGAATCATCCGGAGG+GGG - tig0024372:49652-49671 None:intergenic 55.0%
ATCCTCCGGATTGACAGTCC+AGG + tig0024372:50165-50184 Msa1416590:CDS 55.0%
CTCCTCCTGGACTGTCAATC+CGG - tig0024372:50173-50192 None:intergenic 55.0%
CTTTGTGGGCAAGGTAGCGA+CGG + tig0024372:50527-50546 Msa1416590:CDS 55.0%
GTGGTTGACGAGATTGCCCA+AGG + tig0024372:50570-50589 Msa1416590:CDS 55.0%
TTGACGAGATTGCCCAAGGG+CGG + tig0024372:50574-50593 Msa1416590:CDS 55.0%
! GGCGGCACTGAACCATATGT+TGG + tig0024372:50611-50630 Msa1416590:CDS 55.0%
! ATGTTGGTTGACGCGCTTGG+TGG + tig0024372:50627-50646 Msa1416590:CDS 55.0%
GCGGCACTAGCATCCAGAAA+AGG - tig0024372:51095-51114 None:intergenic 55.0%
TTTCTGGATGCTAGTGCCGC+TGG + tig0024372:51095-51114 Msa1416590:intron 55.0%
GCCTCGGAGCATGTGGAACA+TGG + tig0024372:49295-49314 Msa1416590:CDS 60.0%
TGCACCTCCAAAACCCCCTC+CGG + tig0024372:49636-49655 Msa1416590:CDS 60.0%
!! TCATCCGGAGGGGGTTTTGG+AGG - tig0024372:49643-49662 None:intergenic 60.0%
CTCCTGGACTGTCAATCCGG+AGG - tig0024372:50170-50189 None:intergenic 60.0%
CTCCGGATTGACAGTCCAGG+AGG + tig0024372:50168-50187 Msa1416590:CDS 60.0%
AGATTGCCCAAGGGCGGCTT+TGG + tig0024372:50580-50599 Msa1416590:CDS 60.0%
ATGGTTCAGTGCCGCCTTCC+CGG - tig0024372:50607-50626 None:intergenic 60.0%
GTCCCCTGTGCTTAAGGCAG+AGG + tig0024372:52096-52115 Msa1416590:intron 60.0%
!! GCCCAAGGGCGGCTTTGGAC+CGG + tig0024372:50585-50604 Msa1416590:CDS 70.0%
CCCGGTCCAAAGCCGCCCTT+GGG - tig0024372:50589-50608 None:intergenic 70.0%
!! CCCAAGGGCGGCTTTGGACC+GGG + tig0024372:50586-50605 Msa1416590:CDS 70.0%
TCCCGGTCCAAAGCCGCCCT+TGG - tig0024372:50590-50609 None:intergenic 70.0%
!! AGGGCGGCTTTGGACCGGGA+AGG + tig0024372:50590-50609 Msa1416590:CDS 70.0%
!! GCGGCTTTGGACCGGGAAGG+CGG + tig0024372:50593-50612 Msa1416590:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0024372 gene 48983 53022 48983 ID=Msa1416590;Name=Msa1416590
tig0024372 mRNA 48983 53022 48983 ID=Msa1416590-mRNA-1;Parent=Msa1416590;Name=Msa1416590-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0.5|1|1|1|2|587|629
tig0024372 exon 48983 50730 48983 ID=Msa1416590-mRNA-1:exon:22986;Parent=Msa1416590-mRNA-1
tig0024372 exon 52294 53022 52294 ID=Msa1416590-mRNA-1:exon:22987;Parent=Msa1416590-mRNA-1
tig0024372 CDS 48983 50730 48983 ID=Msa1416590-mRNA-1:cds;Parent=Msa1416590-mRNA-1
tig0024372 CDS 52294 52435 52294 ID=Msa1416590-mRNA-1:cds;Parent=Msa1416590-mRNA-1
tig0024372 three_prime_UTR 52436 53022 52436 ID=Msa1416590-mRNA-1:three_prime_utr;Parent=Msa1416590-mRNA-1
Gene Sequence

>Msa1416590

ATGCTTCGTTACATGTACAGAAAAGCATCACAATCATCCTTCATCTTCATCTCAAACAACTTACGCCATCCTCTTCATCTTCCCGAAACCCCTCACATTCACAAATCCCTCAAATTCTACCGCACACTATCTTCCATTTCCATTGTGGACCGTGTTGCAGCATCTTTACTTCCTACTCAAGAACCAACGTTAGTGTTTTCATCTTCTTCCACTTCAGGTAATGGTAACGGTGTTGATTTTCCCAAGGGTGAGTTTGATTTCGTCCCGCATTCTGGCTTCAAGAAATTTATTGTGAAGGTTAAGACTCTGTTAGCCTCGGAGCATGTGGAACATGGAAGTATATTGAGAATCAATTTACAAGGAAATATTTCCGATGGACCAGTTGGCACTGACTCTAAGGTATTGTCTTTACCTCAGCTAAGTGAAAACCTTATGAAAGCCGCATTTGATCCTCGTGTGTCCGCTGTGTTTCTTAATATAGTTGATTTTTATTGTGGTTGGGCTAAATGTGATGAAATTAGAAGACAAATATCAAATTTTAAAAAATCTGGTAAAAAGGTTATAGCTTTTATGGCTTCATTTTGGAGTTTTGAGCCTGTATTATGGTGTGAAGATAGATCATATTACATAGCTAGTGTATGTGATGAAATATATGCACCTCCAAAACCCCCTCCGGATGATTCTCCAGATACAAGTATTGATAGCCCTGTGAACACGGATTGTATTTATTACAATCTTGTTGAAGTGCAGTATAGGACAGCGGGGAAATACAAATCTGGACATTTAACCACAGATGAAGGATGGGAATCGATGAAGGCAGTTAAGGATGATATAAGATGTAACTGGCTTGTTATGGTTTCTTCTTCAAGGAAAATAAGAGAAGAGGAGATTCTAACTTTTTTTGGTAGTGAGGATTGTCGTGAAGTAGAAAATTGGATAGATTGTAGGTTACTTTCAGGGTTGATGGCTAGTGATAAGATTATCACGGGTCTCAGTAGGAGATTTGGACCACTGCTCGATTTCAAAGCATATTCACAAGTTAAAAAATGCACTGTTGGTATGTCAAATGGCAGGGAAAAGATCGGTGTTATTAGAGTTTGTGGATCCCACAATGAAGGTGCAATTCATGATTTGATTGAGATTATCCGTGGGGCTGGGTCATCAAAAAGTTTGAAGGCTGTAATCCTCCGGATTGACAGTCCAGGAGGAGAATTTTTGTTGGCTGATCAATTATGGAGAGAAGTCAACATTCTTGCTTCAAAGATACCAGTCGTTTCTTCATTATCAGACAAGGCAACTAGTGGTGCATATTTGATTGCAACTGGAGCAGGAACAATTGTTGCTGAGAAACTCACTTATACATGTCAAATTGGAGCGATAAACTCATTTCCAAACACTGAGAAGTTATACAAATACATTGGTTTTAAGAAGGAGGTTCTTCACAGAGGTGGTAAATATGCAGAATTATTTGAGGCTGATCATCGGCCAATCATGCCACATGAAGATGAGCGGATCATAAATGGGTTAGAAGAAGTTTACAAAGTCTTTGTGGGCAAGGTAGCGACGGCCAGATCGTTAAGTGTAGATGTGGTTGACGAGATTGCCCAAGGGCGGCTTTGGACCGGGAAGGCGGCACTGAACCATATGTTGGTTGACGCGCTTGGTGGTTTTTCACGCGCTGTTGCTATAGCCAAATTGAAGGCTAATATACCTCAAAATAGACCTATTAATCTGGTTGAACTCTCTGCTCTGGATGCTGTATGCCTTCAAAGGACTGTTGTTTTACTTATCAGAACACAACAAACTGGACAAAGCCCGGAAATGGGTACTTATACCAACCCTGATTGGAAGAAGGAGCTGTTGTCAACATCAGTGTACTCCATTGGTTGA
Protein sequence

>Msa1416590

MLRYMYRKASQSSFIFISNNLRHPLHLPETPHIHKSLKFYRTLSSISIVDRVAASLLPTQEPTLVFSSSSTSGNGNGVDFPKGEFDFVPHSGFKKFIVKVKTLLASEHVEHGSILRINLQGNISDGPVGTDSKVLSLPQLSENLMKAAFDPRVSAVFLNIVDFYCGWAKCDEIRRQISNFKKSGKKVIAFMASFWSFEPVLWCEDRSYYIASVCDEIYAPPKPPPDDSPDTSIDSPVNTDCIYYNLVEVQYRTAGKYKSGHLTTDEGWESMKAVKDDIRCNWLVMVSSSRKIREEEILTFFGSEDCREVENWIDCRLLSGLMASDKIITGLSRRFGPLLDFKAYSQVKKCTVGMSNGREKIGVIRVCGSHNEGAIHDLIEIIRGAGSSKSLKAVILRIDSPGGEFLLADQLWREVNILASKIPVVSSLSDKATSGAYLIATGAGTIVAEKLTYTCQIGAINSFPNTEKLYKYIGFKKEVLHRGGKYAELFEADHRPIMPHEDERIINGLEEVYKVFVGKVATARSLSVDVVDEIAQGRLWTGKAALNHMLVDALGGFSRAVAIAKLKANIPQNRPINLVELSALDAVCLQRTVVLLIRTQQTGQSPEMGTYTNPDWKKELLSTSVYSIG*