AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334180 MtrunA17_Chr4g0061881 44.815 540 249 13 75 582 67 589 5.25e-136 413
Msa1334180 MtrunA17_Chr2g0307851 41.996 531 270 9 79 583 84 602 4.58e-127 390
Msa1334180 MtrunA17_Chr4g0069071 39.894 376 206 6 130 494 5 371 6.08e-75 244
Msa1334180 MtrunA17_Chr4g0073611 35.197 304 160 8 149 445 2 275 1.18e-46 166
Msa1334180 MtrunA17_Chr5g0408331 31.856 361 159 12 76 429 32 312 2.88e-40 149
Msa1334180 MtrunA17_Chr4g0061841 33.007 306 112 7 148 442 8 231 5.30e-37 138
Msa1334180 MtrunA17_Chr4g0076561 37.255 204 100 3 337 539 10 186 2.74e-35 131
Msa1334180 MtrunA17_Chr5g0437391 30.460 348 179 9 210 553 12 300 7.91e-35 135
Msa1334180 MtrunA17_Chr8g0344851 41.885 191 95 6 411 594 1 182 2.10e-34 129
Msa1334180 MtrunA17_Chr4g0061831 52.294 109 51 1 473 581 9 116 2.18e-32 121
Msa1334180 MtrunA17_Chr4g0064001 43.537 147 68 3 436 582 4 135 1.63e-25 105
Msa1334180 MtrunA17_Chr8g0344821 44.444 99 53 1 484 582 11 107 2.60e-21 89.7
Msa1334180 MtrunA17_Chr4g0076571 55.128 78 26 1 144 221 1 69 5.02e-21 88.2
Msa1334180 MtrunA17_Chr5g0437441 52.222 90 37 3 107 193 7 93 1.56e-20 87.0
Msa1334180 MtrunA17_Chr8g0344831 43.750 112 58 2 326 432 7 118 1.71e-18 82.0
Msa1334180 MtrunA17_Chr4g0069081 47.500 80 42 0 506 585 1 80 1.21e-16 76.3
Msa1334180 MtrunA17_Chr5g0437451 35.507 138 68 4 443 578 30 148 1.72e-16 77.4
Msa1334180 MtrunA17_Chr4g0073621 61.017 59 21 1 526 582 1 59 3.31e-16 73.9
Msa1334180 MtrunA17_Chr5g0408341 63.462 52 19 0 531 582 1 52 2.92e-14 70.5
Msa1334180 MtrunA17_Chr4g0063991 49.254 67 33 1 338 403 1 67 1.50e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334180 AT1G73990.1 38.644 590 319 13 22 582 32 607 7.71e-120 372
Msa1334180 AT1G73990.2 37.657 478 260 9 79 530 90 555 6.75e-94 302

Find 176 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATTTCGTCCCGCATTC+TGG 0.209844 8_4:-54492992 Msa1334180:CDS
GAAGATGAGCGGATCATAAA+TGG 0.215556 8_4:-54491744 Msa1334180:CDS
TGTGCTAAGAGCTTGCTTTA+AGG 0.216377 8_4:+54489203 None:intergenic
GCTTGACTCTGCTGTTTAAA+TGG 0.219189 8_4:-54489366 Msa1334180:three_prime_UTR
ATAGATTGTAAGTTACTTTC+AGG 0.238367 8_4:-54492308 Msa1334180:CDS
GATAGGCAAAATCACATTAT+AGG 0.245255 8_4:+54489060 None:intergenic
TTGTGAATGTGAGGGGTTTC+GGG 0.245290 8_4:+54493163 None:intergenic
TTTGTGAATGTGAGGGGTTT+CGG 0.257624 8_4:+54493162 None:intergenic
TATTAGCATGTAGATGATTT+AGG 0.257669 8_4:-54489460 Msa1334180:three_prime_UTR
TTGGTATAAGTACCCATTTC+GGG 0.263338 8_4:+54489599 None:intergenic
CTCACTTATACATGTCAAAT+TGG 0.274908 8_4:-54491894 Msa1334180:CDS
CCATTGGTTGATGTGCATTC+AGG 0.286389 8_4:-54489535 Msa1334180:CDS
GAGAGTTCAACCAGATTAAT+AGG 0.304701 8_4:+54491522 None:intergenic
AACAGCTCCTTCTTCCAATC+AGG 0.317463 8_4:+54489575 None:intergenic
AGATTGCCCAAGGGCGGCTT+TGG 0.320112 8_4:-54491647 Msa1334180:CDS
TACTTAGACATGACTTAGTT+TGG 0.326609 8_4:-54489304 Msa1334180:three_prime_UTR
ATGGTTTAGTGCCGCCTTCC+CGG 0.326877 8_4:+54491623 None:intergenic
ATGACTTAGTTTGGCCAAAC+TGG 0.336189 8_4:-54489295 Msa1334180:three_prime_UTR
TTGTATAACTTCTCAGTGTT+TGG 0.338375 8_4:+54491855 None:intergenic
AGGTATATTAGCCTTCAATT+TGG 0.345021 8_4:+54491554 None:intergenic
CATCACTGTTCAAATTTGAT+AGG 0.347256 8_4:+54489043 None:intergenic
GGGCTATCAATACTTGTATC+TGG 0.347744 8_4:+54492560 None:intergenic
TAAGTTACTTTCAGGGTTGA+TGG 0.351095 8_4:-54492300 Msa1334180:CDS
GTGCTAAGAGCTTGCTTTAA+GGG 0.353149 8_4:+54489204 None:intergenic
TAACAGAAGGGAAGCCAGTT+TGG 0.364170 8_4:+54489281 None:intergenic
ACCAGTTGGCACTGACTCTA+AGG 0.365682 8_4:-54492867 Msa1334180:CDS
TGTAGATGATTTAGGCCATT+TGG 0.369425 8_4:-54489452 Msa1334180:three_prime_UTR
TCCCGGTCCAAAGCCGCCCT+TGG 0.369925 8_4:+54491640 None:intergenic
TTGTTATGGTTTCTTCTTCA+AGG 0.372590 8_4:-54492397 Msa1334180:CDS
ATTGAGATTATCCGTGGGGC+TGG 0.376386 8_4:-54492110 Msa1334180:CDS
ATCGGTGTTATTAGAGTTTG+TGG 0.378619 8_4:-54492164 Msa1334180:CDS
CTGGTATGATTTGTTTGTCC+TGG 0.379188 8_4:-54489000 Msa1334180:three_prime_UTR
AAGATGTAACTGGCTTGTTA+TGG 0.382012 8_4:-54492411 Msa1334180:CDS
TCTTCTTCCACTTCAGGTAA+TGG 0.382352 8_4:-54493043 Msa1334180:CDS
ATTGTCGTGAAGTAGAAAAT+TGG 0.383838 8_4:-54492331 Msa1334180:CDS
TCATCTTCATGTGGCATGAT+TGG 0.388034 8_4:+54491759 None:intergenic
ACGGGTCTCAGTAGGAGATT+TGG 0.389865 8_4:-54492260 Msa1334180:CDS
GCCCAAGGGCGGCTTTGGAC+CGG 0.392493 8_4:-54491642 Msa1334180:CDS
TCAAAATAGACCTATTAATC+TGG 0.409814 8_4:-54491532 Msa1334180:CDS
AAACTGGACAAAGCCCGAAA+TGG 0.415642 8_4:-54489612 Msa1334180:CDS
GTTGGTATAAGTACCCATTT+CGG 0.416903 8_4:+54489598 None:intergenic
CTTATCAGAACACAACAAAC+TGG 0.418408 8_4:-54489628 Msa1334180:CDS
CTCCTCCTGGACTGTCAATC+CGG 0.422871 8_4:+54492057 None:intergenic
ATGAATTGCACTTTCATTGT+GGG 0.423524 8_4:+54492139 None:intergenic
AAGTAAAGATCGATGACAAT+AGG 0.426110 8_4:+54489322 None:intergenic
CCCAAGGGCGGCTTTGGACC+GGG 0.429403 8_4:-54491641 Msa1334180:CDS
TATGTTTGTGCATTATTGTC+TGG 0.433909 8_4:-54489019 Msa1334180:three_prime_UTR
GATGTGCATTCAGGAATAAC+AGG 0.437794 8_4:-54489526 Msa1334180:CDS
GGTGCATATTTGATTGCAAC+TGG 0.441687 8_4:-54491942 Msa1334180:CDS
CCCGGTCCAAAGCCGCCCTT+GGG 0.444189 8_4:+54491641 None:intergenic
GTAAAACAACAGTCCTTTGA+AGG 0.445649 8_4:+54489650 None:intergenic
GAAGTTTACAAAGTCTTTGT+GGG 0.446335 8_4:-54491714 Msa1334180:CDS
AACTGGACAAAGCCCGAAAT+GGG 0.447850 8_4:-54489611 Msa1334180:CDS
GATCAAATGCGGCTTTCATA+AGG 0.449687 8_4:+54492816 None:intergenic
GGAATCGATGAAGGCAGTTA+AGG 0.451737 8_4:-54492441 Msa1334180:CDS
TATTTGATTGCAACTGGAGC+AGG 0.455192 8_4:-54491936 Msa1334180:CDS
AACACGGTCCACAATGGAAA+TGG 0.473603 8_4:+54493111 None:intergenic
TAAATACAATCCGTGTTCAC+AGG 0.476299 8_4:+54492539 None:intergenic
TAGTGTGCGGTAGAATTTGA+GGG 0.478545 8_4:+54493138 None:intergenic
CACATCTACACTTAACGATC+TGG 0.479653 8_4:+54491677 None:intergenic
GACGAAATCAAACTCACCCT+TGG 0.479725 8_4:+54493003 None:intergenic
ACCTTAGAGTCAGTGCCAAC+TGG 0.479839 8_4:+54492866 None:intergenic
TAGATTGTAAGTTACTTTCA+GGG 0.480160 8_4:-54492307 Msa1334180:CDS
AGAAGTTTACAAAGTCTTTG+TGG 0.483301 8_4:-54491715 Msa1334180:CDS
ACCGTTACCATTACCTGAAG+TGG 0.483377 8_4:+54493036 None:intergenic
TTGAGATTATCCGTGGGGCT+GGG 0.490077 8_4:-54492109 Msa1334180:CDS
CTTCAAGAAATTTATTGTGA+AGG 0.493765 8_4:-54492969 Msa1334180:CDS
CATGAATTGCACTTTCATTG+TGG 0.495107 8_4:+54492138 None:intergenic
CTATCTTCACACCATAATAC+AGG 0.496409 8_4:+54492650 None:intergenic
ATCTTGTTGAAGTGCAGTAT+AGG 0.498853 8_4:-54492511 Msa1334180:CDS
AACTAGCATATAAAACCAAA+TGG 0.499171 8_4:+54489437 None:intergenic
GTACTTATACCAACCCTGAT+TGG 0.505029 8_4:-54489589 Msa1334180:CDS
CTTCTGTTAAAGCAAGCTCT+TGG 0.507466 8_4:-54489267 Msa1334180:three_prime_UTR
ATAGTGTGCGGTAGAATTTG+AGG 0.507587 8_4:+54493137 None:intergenic
CTTGTATCTGGAGAATCATC+CGG 0.508155 8_4:+54492572 None:intergenic
AGGATGATATAAGATGTAAC+TGG 0.510806 8_4:-54492421 Msa1334180:CDS
GAAGTGCAGTATAGGACAGC+GGG 0.512732 8_4:-54492503 Msa1334180:CDS
TGTTGCTATAGCCAAATTGA+AGG 0.514181 8_4:-54491565 Msa1334180:CDS
ACAGCGGGGAAATACAAATC+TGG 0.516542 8_4:-54492488 Msa1334180:CDS
CAAGAGCTTGCTTTAACAGA+AGG 0.519724 8_4:+54489268 None:intergenic
CAAGCGCGTCAACCAACATA+TGG 0.522040 8_4:+54491604 None:intergenic
ATGTTGGTTGACGCGCTTGG+TGG 0.522308 8_4:-54491600 Msa1334180:CDS
CGTTTCTTCATTATCAGACA+AGG 0.522976 8_4:-54491973 Msa1334180:CDS
TGCACTGTTGGTATGTCAAA+TGG 0.523328 8_4:-54492197 Msa1334180:CDS
CTCCTTCTTCCAATCAGGGT+TGG 0.525262 8_4:+54489580 None:intergenic
ATTTCTTGAAGCCAGAATGC+GGG 0.525455 8_4:+54492981 None:intergenic
TCAACATCAGTGTACTCCAT+TGG 0.529318 8_4:-54489551 Msa1334180:CDS
ACGAAATCAAACTCACCCTT+GGG 0.529474 8_4:+54493004 None:intergenic
GTTTGAAGGCTGTAATCCTC+CGG 0.530693 8_4:-54492076 Msa1334180:CDS
TTACAAGGAAATATTTCCGA+TGG 0.530898 8_4:-54492890 Msa1334180:CDS
TTACAAAGTCTTTGTGGGCA+AGG 0.531876 8_4:-54491709 Msa1334180:CDS
AAGATGAGCGGATCATAAAT+GGG 0.535057 8_4:-54491743 Msa1334180:CDS
TAAATATGCAGAATTATTTG+AGG 0.535075 8_4:-54491793 Msa1334180:CDS
GTCAGTGCCAACTGGTCCAT+CGG 0.538824 8_4:+54492874 None:intergenic
TGAAGGATGGGAATCGATGA+AGG 0.539636 8_4:-54492450 Msa1334180:CDS
GGACATTTAACCACAGATGA+AGG 0.540268 8_4:-54492467 Msa1334180:CDS
ACTATCTTCCATTTCCATTG+TGG 0.545148 8_4:-54493119 Msa1334180:CDS
GTTGTTTGAGATGAAGATGA+AGG 0.549690 8_4:+54493207 None:intergenic
GCCTCGGAGCATGTGGAACA+TGG 0.549933 8_4:-54492932 Msa1334180:CDS
CTCAAAACAGTATCAAATCC+AGG 0.550202 8_4:+54489393 None:intergenic
AGATTATCACGGGTCTCAGT+AGG 0.550801 8_4:-54492268 Msa1334180:CDS
GCGGCTTTGGACCGGGAAGG+CGG 0.553063 8_4:-54491634 Msa1334180:CDS
ACTAACGTTGGTTCTTGAGT+AGG 0.554396 8_4:+54493073 None:intergenic
TTCAAGGAAAATAAGAGAAG+AGG 0.555199 8_4:-54492381 Msa1334180:CDS
AGGGCGGCTTTGGACCGGGA+AGG 0.558400 8_4:-54491637 Msa1334180:CDS
GATTTGATTGAGATTATCCG+TGG 0.559731 8_4:-54492116 Msa1334180:CDS
CTGTTGGTATGTCAAATGGC+AGG 0.562620 8_4:-54492193 Msa1334180:CDS
TCCACTTCAGGTAATGGTAA+CGG 0.563991 8_4:-54493037 Msa1334180:CDS
TCTGTTAGCCTCGGAGCATG+TGG 0.564327 8_4:-54492939 Msa1334180:CDS
ACAGGTTCACAGATAGCTCC+AGG 0.568791 8_4:+54488982 None:intergenic
TCTGATAATGAAGAAACGAC+TGG 0.568882 8_4:+54491978 None:intergenic
ATTTAACCACAGATGAAGGA+TGG 0.568911 8_4:-54492463 Msa1334180:CDS
GAGAAGTTATACAAATACAT+TGG 0.571158 8_4:-54491846 Msa1334180:CDS
ATAACACAGTTCAAAACTGA+TGG 0.572477 8_4:+54489116 None:intergenic
TACCAACCCTGATTGGAAGA+AGG 0.572792 8_4:-54489582 Msa1334180:CDS
GGGGTTTCGGGAAGATGAAG+AGG 0.574598 8_4:+54493175 None:intergenic
AAATACAATCCGTGTTCACA+GGG 0.575360 8_4:+54492540 None:intergenic
ATTACTAATGTAGAGAGTGA+AGG 0.576126 8_4:+54489166 None:intergenic
TTCAGGAATAACAGGAGGGA+TGG 0.577523 8_4:-54489518 Msa1334180:CDS
ATATTGAGAATCAATTTACA+AGG 0.578147 8_4:-54492905 Msa1334180:CDS
TGAGGGATTTGTGAATGTGA+GGG 0.580001 8_4:+54493155 None:intergenic
GCTAGTGATAAGATTATCAC+GGG 0.582665 8_4:-54492278 Msa1334180:CDS
ACAGCTCCTTCTTCCAATCA+GGG 0.583747 8_4:+54489576 None:intergenic
GTGGTTGACGAGATTGCCCA+AGG 0.585641 8_4:-54491657 Msa1334180:CDS
AATTATTTGAGGCTGATCAT+CGG 0.586001 8_4:-54491782 Msa1334180:CDS
TTGACGAGATTGCCCAAGGG+CGG 0.586860 8_4:-54491653 Msa1334180:CDS
ATCCTCCGGATTGACAGTCC+AGG 0.587117 8_4:-54492062 Msa1334180:CDS
TATTGATAGCCCTGTGAACA+CGG 0.587964 8_4:-54492549 Msa1334180:CDS
CTTTGTGGGCAAGGTAGCGA+TGG 0.589923 8_4:-54491700 Msa1334180:CDS
AAGAGCTTGCTTTAACAGAA+GGG 0.590552 8_4:+54489269 None:intergenic
TGGATGTTGTATGCCTTCAA+AGG 0.592887 8_4:-54489663 Msa1334180:CDS
CGATTCCCATCCTTCATCTG+TGG 0.594942 8_4:+54492457 None:intergenic
GGCGGCACTAAACCATATGT+TGG 0.595197 8_4:-54491616 Msa1334180:CDS
GGCTAGTGATAAGATTATCA+CGG 0.596190 8_4:-54492279 Msa1334180:CDS
GGTTAAGACTCTGTTAGCCT+CGG 0.596334 8_4:-54492948 Msa1334180:CDS
AATATTTCCGATGGACCAGT+TGG 0.597583 8_4:-54492881 Msa1334180:CDS
TCTGGAGAATCATCCGGAGG+GGG 0.598601 8_4:+54492578 None:intergenic
CATATGTTGGTTGACGCGCT+TGG 0.602640 8_4:-54491603 Msa1334180:CDS
TTTAACCACAGATGAAGGAT+GGG 0.605296 8_4:-54492462 Msa1334180:CDS
TTGAGGGATTTGTGAATGTG+AGG 0.606072 8_4:+54493154 None:intergenic
GAGGGATTTGTGAATGTGAG+GGG 0.607039 8_4:+54493156 None:intergenic
CTCCTGGACTGTCAATCCGG+AGG 0.612922 8_4:+54492060 None:intergenic
TGTTGGTATGTCAAATGGCA+GGG 0.616785 8_4:-54492192 Msa1334180:CDS
AATTTCTTGAAGCCAGAATG+CGG 0.621440 8_4:+54492980 None:intergenic
TTCAAAAGTTGACAGAGTGA+AGG 0.622058 8_4:+54489083 None:intergenic
TGCTGCAACACGGTCCACAA+TGG 0.622831 8_4:+54493105 None:intergenic
TATCTGGAGAATCATCCGGA+GGG 0.623341 8_4:+54492576 None:intergenic
TCAAATGGCAGGGAAAAGAT+CGG 0.628546 8_4:-54492182 Msa1334180:CDS
AAGGAGGTTCTTCACAGAGG+TGG 0.630578 8_4:-54491816 Msa1334180:CDS
GAAGATGAAAACACTAACGT+TGG 0.631994 8_4:+54493061 None:intergenic
ATGATCCGCTCATCTTCATG+TGG 0.633308 8_4:+54491750 None:intergenic
ATCTGGAGAATCATCCGGAG+GGG 0.638622 8_4:+54492577 None:intergenic
TTATCAGACAAGGCAACTAG+TGG 0.639169 8_4:-54491963 Msa1334180:CDS
GTGCATTCAGGAATAACAGG+AGG 0.649237 8_4:-54489523 Msa1334180:CDS
CCTGAATGCACATCAACCAA+TGG 0.649333 8_4:+54489535 None:intergenic
ATAATAAACTCAACTCACAC+AGG 0.658801 8_4:+54488964 None:intergenic
CAGATCGTTAAGTGTAGATG+TGG 0.659544 8_4:-54491676 Msa1334180:CDS
GTATCTGGAGAATCATCCGG+AGG 0.659830 8_4:+54492575 None:intergenic
ATTTGATTGAGATTATCCGT+GGG 0.666741 8_4:-54492115 Msa1334180:CDS
AGAAACACAGCGGACACACG+AGG 0.667158 8_4:+54492794 None:intergenic
TGCATTCAGGAATAACAGGA+GGG 0.668569 8_4:-54489522 Msa1334180:CDS
TTTCGGGAAGATGAAGAGGA+TGG 0.668798 8_4:+54493179 None:intergenic
TCATGCCACATGAAGATGAG+CGG 0.671782 8_4:-54491755 Msa1334180:CDS
AAGAAGGAGGTTCTTCACAG+AGG 0.681303 8_4:-54491819 Msa1334180:CDS
CTCCGGATTGACAGTCCAGG+AGG 0.681617 8_4:-54492059 Msa1334180:CDS
TGGTTGACGAGATTGCCCAA+GGG 0.693802 8_4:-54491656 Msa1334180:CDS
GAAGTAAAGATGCTGCAACA+CGG 0.695209 8_4:+54493095 None:intergenic
TCCATGTTCCACATGCTCCG+AGG 0.700945 8_4:+54492931 None:intergenic
CTTTAAGGGAAGCCTAACAG+TGG 0.711846 8_4:+54489218 None:intergenic
TATGCTTTGAAATCGAGCAG+TGG 0.712517 8_4:+54492236 None:intergenic
TGGAAATGGAAGATAGTGTG+CGG 0.715103 8_4:+54493125 None:intergenic
TGAAGTGCAGTATAGGACAG+CGG 0.718438 8_4:-54492504 Msa1334180:CDS
AACTATGTTAAGAAACACAG+CGG 0.736652 8_4:+54492784 None:intergenic
AAGTGCAGTATAGGACAGCG+GGG 0.749747 8_4:-54492502 Msa1334180:CDS
TTTGATTGAGATTATCCGTG+GGG 0.755479 8_4:-54492114 Msa1334180:CDS
GGACACACGAGGATCAAATG+CGG 0.763717 8_4:+54492805 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCAAATTTTAAAAAATC+TGG - chr8_4:54489488-54489507 Msa1334180:exon 10.0%
!!! TTTTAAAAAATCTGGTAAAA+AGG - chr8_4:54489496-54489515 Msa1334180:exon 15.0%
!! ATATTGAGAATCAATTTACA+AGG - chr8_4:54489299-54489318 Msa1334180:three_prime_UTR 20.0%
!!! AACATAGTTGATTTTTATTG+TGG - chr8_4:54489434-54489453 Msa1334180:three_prime_UTR 20.0%
!!! TAAAAAGGTTATAGCTTTTA+TGG - chr8_4:54489511-54489530 Msa1334180:CDS 20.0%
!! TAAATATGCAGAATTATTTG+AGG - chr8_4:54490411-54490430 Msa1334180:intron 20.0%
!!! ACTATTTTTCTTTCTTTTAC+TGG - chr8_4:54490738-54490757 Msa1334180:intron 20.0%
!! GAAAAAAACCTTACAAAATT+GGG + chr8_4:54490872-54490891 None:intergenic 20.0%
!! AGAAAAAAACCTTACAAAAT+TGG + chr8_4:54490873-54490892 None:intergenic 20.0%
!!! TTTGTAAGGTTTTTTTCTTT+TGG - chr8_4:54490875-54490894 Msa1334180:intron 20.0%
!! AATTTAATATTCTTCCTTCA+AGG - chr8_4:54491221-54491240 Msa1334180:intron 20.0%
!!! TTTTTAAAGTAATTAGCGTA+TGG + chr8_4:54491538-54491557 None:intergenic 20.0%
!! AAAAACATAGAATTCAAAAC+AGG + chr8_4:54491773-54491792 None:intergenic 20.0%
!!! AATTTTCTAAAATCAAGGAA+TGG + chr8_4:54492168-54492187 None:intergenic 20.0%
!!! ATTCCTTGATTTTAGAAAAT+TGG - chr8_4:54492167-54492186 Msa1334180:CDS 20.0%
!!! AATTTTCTAAAATCAAGGAA+TGG + chr8_4:54492168-54492187 None:intergenic 20.0%
!!! ATTCCTTGATTTTAGAAAAT+TGG - chr8_4:54492167-54492186 Msa1334180:CDS 20.0%
!!! GTTTGTAAATTTTAGACTTA+TGG - chr8_4:54492488-54492507 Msa1334180:CDS 20.0%
! CTTCAAGAAATTTATTGTGA+AGG - chr8_4:54489235-54489254 Msa1334180:three_prime_UTR 25.0%
!!! TAGTTGATTTTTATTGTGGT+TGG - chr8_4:54489438-54489457 Msa1334180:three_prime_UTR 25.0%
!!! AGTTGATTTTTATTGTGGTT+GGG - chr8_4:54489439-54489458 Msa1334180:three_prime_UTR 25.0%
!! ATAGATTGTAAGTTACTTTC+AGG - chr8_4:54489896-54489915 Msa1334180:intron 25.0%
!! TAGATTGTAAGTTACTTTCA+GGG - chr8_4:54489897-54489916 Msa1334180:intron 25.0%
! GAGAAGTTATACAAATACAT+TGG - chr8_4:54490358-54490377 Msa1334180:intron 25.0%
!!! CAAATACATTGGTTTTAAGA+AGG - chr8_4:54490369-54490388 Msa1334180:intron 25.0%
!! AGATTAATAGGTCTATTTTG+AGG + chr8_4:54490673-54490692 None:intergenic 25.0%
! TCAAAATAGACCTATTAATC+TGG - chr8_4:54490672-54490691 Msa1334180:intron 25.0%
!!! TATGTTTTTTTGCTGAAAAG+TGG - chr8_4:54490779-54490798 Msa1334180:intron 25.0%
!!! AACTTTTTCCCAATTTTGTA+AGG - chr8_4:54490861-54490880 Msa1334180:intron 25.0%
!! GACTTTTAAATTGGATAGTT+TGG - chr8_4:54490904-54490923 Msa1334180:intron 25.0%
! GGGAAAAAACAAACAAAAAA+GGG + chr8_4:54491050-54491069 None:intergenic 25.0%
!!! ATTTTCTCTGAGAACTAAAA+AGG - chr8_4:54491331-54491350 Msa1334180:intron 25.0%
! TGAAATAACACTATAATGAC+CGG + chr8_4:54491721-54491740 None:intergenic 25.0%
!!! TTACCAGTAATTTTTTTGCT+AGG - chr8_4:54492113-54492132 Msa1334180:CDS 25.0%
! AATCCTAGCAAAAAAATTAC+TGG + chr8_4:54492119-54492138 None:intergenic 25.0%
!!! AGTAATTTTTTTGCTAGGAT+TGG - chr8_4:54492118-54492137 Msa1334180:CDS 25.0%
!!! GAACCAATTTTCTAAAATCA+AGG + chr8_4:54492173-54492192 None:intergenic 25.0%
!!! TTACCAGTAATTTTTTTGCT+AGG - chr8_4:54492113-54492132 Msa1334180:CDS 25.0%
! AATCCTAGCAAAAAAATTAC+TGG + chr8_4:54492119-54492138 None:intergenic 25.0%
!!! AGTAATTTTTTTGCTAGGAT+TGG - chr8_4:54492118-54492137 Msa1334180:CDS 25.0%
!!! GAACCAATTTTCTAAAATCA+AGG + chr8_4:54492173-54492192 None:intergenic 25.0%
! AAAATTTACAAACCAGAAAC+CGG + chr8_4:54492481-54492500 None:intergenic 25.0%
! TGCAGAAAAAAGAAAACAAA+TGG + chr8_4:54492518-54492537 None:intergenic 25.0%
! TATTAGCATGTAGATGATTT+AGG - chr8_4:54492744-54492763 Msa1334180:CDS 25.0%
! AACTAGCATATAAAACCAAA+TGG + chr8_4:54492770-54492789 None:intergenic 25.0%
!!! TATATGCTAGTTTTTTAGTG+TGG - chr8_4:54492778-54492797 Msa1334180:CDS 25.0%
!!! ATATGCTAGTTTTTTAGTGT+GGG - chr8_4:54492779-54492798 Msa1334180:CDS 25.0%
TTACAAGGAAATATTTCCGA+TGG - chr8_4:54489314-54489333 Msa1334180:three_prime_UTR 30.0%
AACTATGTTAAGAAACACAG+CGG + chr8_4:54489423-54489442 None:intergenic 30.0%
! TAGCTTTTATGGCTTCATTT+TGG - chr8_4:54489522-54489541 Msa1334180:CDS 30.0%
AGGATGATATAAGATGTAAC+TGG - chr8_4:54489783-54489802 Msa1334180:intron 30.0%
TTGTTATGGTTTCTTCTTCA+AGG - chr8_4:54489807-54489826 Msa1334180:intron 30.0%
TTCAAGGAAAATAAGAGAAG+AGG - chr8_4:54489823-54489842 Msa1334180:intron 30.0%
!!! GAGGAGATTCTAACTTTTTT+TGG - chr8_4:54489842-54489861 Msa1334180:intron 30.0%
!!! TCTAACTTTTTTTGGTAGTG+AGG - chr8_4:54489850-54489869 Msa1334180:intron 30.0%
ATTGTCGTGAAGTAGAAAAT+TGG - chr8_4:54489873-54489892 Msa1334180:intron 30.0%
CAAGTTAAAAAATGCACTGT+TGG - chr8_4:54489995-54490014 Msa1334180:intron 30.0%
ATGAATTGCACTTTCATTGT+GGG + chr8_4:54490068-54490087 None:intergenic 30.0%
ATTTGATTGAGATTATCCGT+GGG - chr8_4:54490089-54490108 Msa1334180:intron 30.0%
!! TTTTGTTGGCTGATCAATTA+TGG - chr8_4:54490173-54490192 Msa1334180:intron 30.0%
CTCACTTATACATGTCAAAT+TGG - chr8_4:54490310-54490329 Msa1334180:intron 30.0%
TTGTATAACTTCTCAGTGTT+TGG + chr8_4:54490352-54490371 None:intergenic 30.0%
!!! ATACATTGGTTTTAAGAAGG+AGG - chr8_4:54490372-54490391 Msa1334180:intron 30.0%
! AATTATTTGAGGCTGATCAT+CGG - chr8_4:54490422-54490441 Msa1334180:intron 30.0%
AGAAGTTTACAAAGTCTTTG+TGG - chr8_4:54490489-54490508 Msa1334180:intron 30.0%
GAAGTTTACAAAGTCTTTGT+GGG - chr8_4:54490490-54490509 Msa1334180:intron 30.0%
!! AGGTATATTAGCCTTCAATT+TGG + chr8_4:54490653-54490672 None:intergenic 30.0%
! CGTAATTTAAGGTTTAAACG+AGG - chr8_4:54490707-54490726 Msa1334180:intron 30.0%
!! TTTTACTGGTTGAACTCTTT+GGG - chr8_4:54490752-54490771 Msa1334180:intron 30.0%
ATGCATTCTTGTGTTTGTAT+AGG - chr8_4:54490809-54490828 Msa1334180:intron 30.0%
!!! GGTTTTTTTCTTTTGGAAAG+TGG - chr8_4:54490882-54490901 Msa1334180:intron 30.0%
!! TGGAAAGTGGACTTTTAAAT+TGG - chr8_4:54490895-54490914 Msa1334180:intron 30.0%
ACGTTCTACAAATGATTCAT+TGG + chr8_4:54491019-54491038 None:intergenic 30.0%
GGGGAAAAAACAAACAAAAA+AGG + chr8_4:54491051-54491070 None:intergenic 30.0%
! AAGCAAAGAGAATTCAAGTT+TGG + chr8_4:54491173-54491192 None:intergenic 30.0%
TTCTCTTTGCTTTGCAATAT+TGG - chr8_4:54491181-54491200 Msa1334180:intron 30.0%
TTGAATGAGATTTCAACAAG+TGG - chr8_4:54491271-54491290 Msa1334180:intron 30.0%
TGAATGAGATTTCAACAAGT+GGG - chr8_4:54491272-54491291 Msa1334180:intron 30.0%
AATAAATGCAAACAAGAGCT+TGG + chr8_4:54491425-54491444 None:intergenic 30.0%
! AGCTCTTGTTTGCATTTATT+TGG - chr8_4:54491425-54491444 Msa1334180:intron 30.0%
GACTTAAACATTCTCAAAAC+TGG + chr8_4:54491469-54491488 None:intergenic 30.0%
! AGTTTTTGTATGACACATAC+CGG - chr8_4:54491699-54491718 Msa1334180:CDS 30.0%
! TTTTATGCTCAACTTGTACA+TGG - chr8_4:54491792-54491811 Msa1334180:CDS 30.0%
! AGGGATACACAAATTTTACA+TGG + chr8_4:54491906-54491925 None:intergenic 30.0%
AATGATATTGTCAACCTTCA+TGG + chr8_4:54491943-54491962 None:intergenic 30.0%
! GCATTGACACTTAAATTGAA+TGG + chr8_4:54492041-54492060 None:intergenic 30.0%
! ACTGTTTGATGTATTTCTGT+CGG - chr8_4:54492196-54492215 Msa1334180:CDS 30.0%
! GCATTGACACTTAAATTGAA+TGG + chr8_4:54492041-54492060 None:intergenic 30.0%
! ACTGTTTGATGTATTTCTGT+CGG - chr8_4:54492196-54492215 Msa1334180:CDS 30.0%
AAGTAAAGATCGATGACAAT+AGG + chr8_4:54492885-54492904 None:intergenic 30.0%
TACTTAGACATGACTTAGTT+TGG - chr8_4:54492900-54492919 Msa1334180:CDS 30.0%
ATTACTAATGTAGAGAGTGA+AGG + chr8_4:54493041-54493060 None:intergenic 30.0%
ATAACACAGTTCAAAACTGA+TGG + chr8_4:54493091-54493110 None:intergenic 30.0%
GATAGGCAAAATCACATTAT+AGG + chr8_4:54493147-54493166 None:intergenic 30.0%
CATCACTGTTCAAATTTGAT+AGG + chr8_4:54493164-54493183 None:intergenic 30.0%
TATGTTTGTGCATTATTGTC+TGG - chr8_4:54493185-54493204 Msa1334180:CDS 30.0%
ATAATAAACTCAACTCACAC+AGG + chr8_4:54493243-54493262 None:intergenic 30.0%
! GTTGTTTGAGATGAAGATGA+AGG + chr8_4:54489000-54489019 None:intergenic 35.0%
ACTATCTTCCATTTCCATTG+TGG - chr8_4:54489085-54489104 Msa1334180:three_prime_UTR 35.0%
GAAGATGAAAACACTAACGT+TGG + chr8_4:54489146-54489165 None:intergenic 35.0%
! TTTTCATCTTCTTCCACTTC+AGG - chr8_4:54489155-54489174 Msa1334180:three_prime_UTR 35.0%
AATTTCTTGAAGCCAGAATG+CGG + chr8_4:54489227-54489246 None:intergenic 35.0%
! ATAAGGTTTTCACTTAGCTG+AGG + chr8_4:54489374-54489393 None:intergenic 35.0%
CTATCTTCACACCATAATAC+AGG + chr8_4:54489557-54489576 None:intergenic 35.0%
AAATACAATCCGTGTTCACA+GGG + chr8_4:54489667-54489686 None:intergenic 35.0%
TAAATACAATCCGTGTTCAC+AGG + chr8_4:54489668-54489687 None:intergenic 35.0%
ATCTTGTTGAAGTGCAGTAT+AGG - chr8_4:54489693-54489712 Msa1334180:intron 35.0%
ATTTAACCACAGATGAAGGA+TGG - chr8_4:54489741-54489760 Msa1334180:intron 35.0%
TTTAACCACAGATGAAGGAT+GGG - chr8_4:54489742-54489761 Msa1334180:intron 35.0%
!! AAGATGTAACTGGCTTGTTA+TGG - chr8_4:54489793-54489812 Msa1334180:intron 35.0%
! TAAGTTACTTTCAGGGTTGA+TGG - chr8_4:54489904-54489923 Msa1334180:intron 35.0%
GGCTAGTGATAAGATTATCA+CGG - chr8_4:54489925-54489944 Msa1334180:intron 35.0%
GCTAGTGATAAGATTATCAC+GGG - chr8_4:54489926-54489945 Msa1334180:intron 35.0%
!! ATCGGTGTTATTAGAGTTTG+TGG - chr8_4:54490040-54490059 Msa1334180:intron 35.0%
CATGAATTGCACTTTCATTG+TGG + chr8_4:54490069-54490088 None:intergenic 35.0%
GATTTGATTGAGATTATCCG+TGG - chr8_4:54490088-54490107 Msa1334180:intron 35.0%
TTTGATTGAGATTATCCGTG+GGG - chr8_4:54490090-54490109 Msa1334180:intron 35.0%
TGGGTCATCAAAAAGTTTGA+AGG - chr8_4:54490114-54490133 Msa1334180:intron 35.0%
! TCTGATAATGAAGAAACGAC+TGG + chr8_4:54490229-54490248 None:intergenic 35.0%
CGTTTCTTCATTATCAGACA+AGG - chr8_4:54490231-54490250 Msa1334180:intron 35.0%
AAGATGAGCGGATCATAAAT+GGG - chr8_4:54490461-54490480 Msa1334180:intron 35.0%
TGTTGCTATAGCCAAATTGA+AGG - chr8_4:54490639-54490658 Msa1334180:intron 35.0%
GAGAGTTCAACCAGATTAAT+AGG + chr8_4:54490685-54490704 None:intergenic 35.0%
TGAACTCTCTGCGTAATTTA+AGG - chr8_4:54490696-54490715 Msa1334180:intron 35.0%
!! CTTTTACTGGTTGAACTCTT+TGG - chr8_4:54490751-54490770 Msa1334180:intron 35.0%
TTGGATAGTTTGGATAGTCA+TGG - chr8_4:54490914-54490933 Msa1334180:intron 35.0%
!!! GTTTGTTTTTTCCCCTTTTC+TGG - chr8_4:54491056-54491075 Msa1334180:intron 35.0%
!! GTGATCAAATTTTAGTCCAG+CGG + chr8_4:54491091-54491110 None:intergenic 35.0%
AGTAACAAGTGCTTAGTTGT+TGG + chr8_4:54491137-54491156 None:intergenic 35.0%
TCTTTGCTTTGCAATATTGG+TGG - chr8_4:54491184-54491203 Msa1334180:intron 35.0%
! GCAATATTGGTGGTATCTAA+TGG - chr8_4:54491194-54491213 Msa1334180:intron 35.0%
AATATTCTTCCTTCAAGGAC+AGG - chr8_4:54491226-54491245 Msa1334180:intron 35.0%
! TCTGATAGTGCAGTGTTATT+TGG - chr8_4:54491574-54491593 Msa1334180:CDS 35.0%
TATGTACGTGAAGAATCGTT+TGG + chr8_4:54491634-54491653 None:intergenic 35.0%
! CACTGACTGATTAACTTGAT+AGG - chr8_4:54491662-54491681 Msa1334180:CDS 35.0%
CATGGATAGTTAGGAATAGA+GGG + chr8_4:54491925-54491944 None:intergenic 35.0%
TCATGGATAGTTAGGAATAG+AGG + chr8_4:54491926-54491945 None:intergenic 35.0%
CTATTCCTAACTATCCATGA+AGG - chr8_4:54491926-54491945 Msa1334180:CDS 35.0%
GGAATGGCATTAGTAGTTTA+CGG + chr8_4:54492152-54492171 None:intergenic 35.0%
GGAATGGCATTAGTAGTTTA+CGG + chr8_4:54492152-54492171 None:intergenic 35.0%
! GTTTTCTTTTTTCTGCAGTC+TGG - chr8_4:54492521-54492540 Msa1334180:CDS 35.0%
GTAAAACAACAGTCCTTTGA+AGG + chr8_4:54492557-54492576 None:intergenic 35.0%
CTTATCAGAACACAACAAAC+TGG - chr8_4:54492576-54492595 Msa1334180:CDS 35.0%
TTGGTATAAGTACCCATTTC+GGG + chr8_4:54492608-54492627 None:intergenic 35.0%
GTTGGTATAAGTACCCATTT+CGG + chr8_4:54492609-54492628 None:intergenic 35.0%
TGTAGATGATTTAGGCCATT+TGG - chr8_4:54492752-54492771 Msa1334180:CDS 35.0%
CTCAAAACAGTATCAAATCC+AGG + chr8_4:54492814-54492833 None:intergenic 35.0%
! AAGAGCTTGCTTTAACAGAA+GGG + chr8_4:54492938-54492957 None:intergenic 35.0%
! GTTGACATTTTACCACTGTT+AGG - chr8_4:54492974-54492993 Msa1334180:CDS 35.0%
TTCAAAAGTTGACAGAGTGA+AGG + chr8_4:54493124-54493143 None:intergenic 35.0%
TTTGTGAATGTGAGGGGTTT+CGG + chr8_4:54489045-54489064 None:intergenic 40.0%
TGAGGGATTTGTGAATGTGA+GGG + chr8_4:54489052-54489071 None:intergenic 40.0%
TTGAGGGATTTGTGAATGTG+AGG + chr8_4:54489053-54489072 None:intergenic 40.0%
TAGTGTGCGGTAGAATTTGA+GGG + chr8_4:54489069-54489088 None:intergenic 40.0%
ATAGTGTGCGGTAGAATTTG+AGG + chr8_4:54489070-54489089 None:intergenic 40.0%
TGGAAATGGAAGATAGTGTG+CGG + chr8_4:54489082-54489101 None:intergenic 40.0%
GAAGTAAAGATGCTGCAACA+CGG + chr8_4:54489112-54489131 None:intergenic 40.0%
!! ACTAACGTTGGTTCTTGAGT+AGG + chr8_4:54489134-54489153 None:intergenic 40.0%
TCTTCTTCCACTTCAGGTAA+TGG - chr8_4:54489161-54489180 Msa1334180:three_prime_UTR 40.0%
! TCCACTTCAGGTAATGGTAA+CGG - chr8_4:54489167-54489186 Msa1334180:three_prime_UTR 40.0%
!!! TAACGGTGTTGATTTTCCCA+AGG - chr8_4:54489184-54489203 Msa1334180:three_prime_UTR 40.0%
!!! AACGGTGTTGATTTTCCCAA+GGG - chr8_4:54489185-54489204 Msa1334180:three_prime_UTR 40.0%
ACGAAATCAAACTCACCCTT+GGG + chr8_4:54489203-54489222 None:intergenic 40.0%
ATTTCTTGAAGCCAGAATGC+GGG + chr8_4:54489226-54489245 None:intergenic 40.0%
AATATTTCCGATGGACCAGT+TGG - chr8_4:54489323-54489342 Msa1334180:three_prime_UTR 40.0%
GATCAAATGCGGCTTTCATA+AGG + chr8_4:54489391-54489410 None:intergenic 40.0%
!!! GGAGTTTTGAGCCTGTATTA+TGG - chr8_4:54489543-54489562 Msa1334180:CDS 40.0%
CTTGTATCTGGAGAATCATC+CGG + chr8_4:54489635-54489654 None:intergenic 40.0%
GGGCTATCAATACTTGTATC+TGG + chr8_4:54489647-54489666 None:intergenic 40.0%
! TATTGATAGCCCTGTGAACA+CGG - chr8_4:54489655-54489674 Msa1334180:CDS 40.0%
GGACATTTAACCACAGATGA+AGG - chr8_4:54489737-54489756 Msa1334180:intron 40.0%
!! TATGCTTTGAAATCGAGCAG+TGG + chr8_4:54489971-54489990 None:intergenic 40.0%
TGCACTGTTGGTATGTCAAA+TGG - chr8_4:54490007-54490026 Msa1334180:intron 40.0%
TGTTGGTATGTCAAATGGCA+GGG - chr8_4:54490012-54490031 Msa1334180:intron 40.0%
TCAAATGGCAGGGAAAAGAT+CGG - chr8_4:54490022-54490041 Msa1334180:intron 40.0%
! TCCAGGAGGAGAATTTTTGT+TGG - chr8_4:54490159-54490178 Msa1334180:intron 40.0%
TTATCAGACAAGGCAACTAG+TGG - chr8_4:54490241-54490260 Msa1334180:intron 40.0%
GGTGCATATTTGATTGCAAC+TGG - chr8_4:54490262-54490281 Msa1334180:intron 40.0%
TATTTGATTGCAACTGGAGC+AGG - chr8_4:54490268-54490287 Msa1334180:intron 40.0%
TCATCTTCATGTGGCATGAT+TGG + chr8_4:54490448-54490467 None:intergenic 40.0%
GAAGATGAGCGGATCATAAA+TGG - chr8_4:54490460-54490479 Msa1334180:intron 40.0%
TTACAAAGTCTTTGTGGGCA+AGG - chr8_4:54490495-54490514 Msa1334180:intron 40.0%
CACATCTACACTTAACGATC+TGG + chr8_4:54490530-54490549 None:intergenic 40.0%
CAGATCGTTAAGTGTAGATG+TGG - chr8_4:54490528-54490547 Msa1334180:intron 40.0%
TGGTTTCTTGCTGAAAAGTG+TGG - chr8_4:54490934-54490953 Msa1334180:intron 40.0%
AAGTGCTTAGTTGTTGGCAA+AGG + chr8_4:54491131-54491150 None:intergenic 40.0%
TGTTAATGTCCTGTCCTTGA+AGG + chr8_4:54491238-54491257 None:intergenic 40.0%
ATGCAAACAAGAGCTTGGAA+AGG + chr8_4:54491420-54491439 None:intergenic 40.0%
! GCATTTATTTGGCTCACACT+TGG - chr8_4:54491436-54491455 Msa1334180:intron 40.0%
GATGCTCTCATATTCCATGT+AGG - chr8_4:54491868-54491887 Msa1334180:CDS 40.0%
GGTGATATTGTCAACCTACA+TGG + chr8_4:54491885-54491904 None:intergenic 40.0%
GTCAACCTTCATGGATAGTT+AGG + chr8_4:54491934-54491953 None:intergenic 40.0%
TGGATGTTGTATGCCTTCAA+AGG - chr8_4:54492541-54492560 Msa1334180:CDS 40.0%
GTACTTATACCAACCCTGAT+TGG - chr8_4:54492615-54492634 Msa1334180:CDS 40.0%
TCAACATCAGTGTACTCCAT+TGG - chr8_4:54492653-54492672 Msa1334180:CDS 40.0%
GATGTGCATTCAGGAATAAC+AGG - chr8_4:54492678-54492697 Msa1334180:CDS 40.0%
TGCATTCAGGAATAACAGGA+GGG - chr8_4:54492682-54492701 Msa1334180:CDS 40.0%
! TAGTGTGGGTTTTTATGTCC+TGG - chr8_4:54492793-54492812 Msa1334180:CDS 40.0%
! GCTTGACTCTGCTGTTTAAA+TGG - chr8_4:54492838-54492857 Msa1334180:CDS 40.0%
! ATGACTTAGTTTGGCCAAAC+TGG - chr8_4:54492909-54492928 Msa1334180:CDS 40.0%
! CAAGAGCTTGCTTTAACAGA+AGG + chr8_4:54492939-54492958 None:intergenic 40.0%
CTTCTGTTAAAGCAAGCTCT+TGG - chr8_4:54492937-54492956 Msa1334180:CDS 40.0%
! GTGCTAAGAGCTTGCTTTAA+GGG + chr8_4:54493003-54493022 None:intergenic 40.0%
! TGTGCTAAGAGCTTGCTTTA+AGG + chr8_4:54493004-54493023 None:intergenic 40.0%
!! CTGGTATGATTTGTTTGTCC+TGG - chr8_4:54493204-54493223 Msa1334180:CDS 40.0%
TTTCGGGAAGATGAAGAGGA+TGG + chr8_4:54489028-54489047 None:intergenic 45.0%
TTGTGAATGTGAGGGGTTTC+GGG + chr8_4:54489044-54489063 None:intergenic 45.0%
GAGGGATTTGTGAATGTGAG+GGG + chr8_4:54489051-54489070 None:intergenic 45.0%
AACACGGTCCACAATGGAAA+TGG + chr8_4:54489096-54489115 None:intergenic 45.0%
ACCGTTACCATTACCTGAAG+TGG + chr8_4:54489171-54489190 None:intergenic 45.0%
GACGAAATCAAACTCACCCT+TGG + chr8_4:54489204-54489223 None:intergenic 45.0%
! TTTGATTTCGTCCCGCATTC+TGG - chr8_4:54489212-54489231 Msa1334180:three_prime_UTR 45.0%
! GGTTAAGACTCTGTTAGCCT+CGG - chr8_4:54489256-54489275 Msa1334180:three_prime_UTR 45.0%
TATCTGGAGAATCATCCGGA+GGG + chr8_4:54489631-54489650 None:intergenic 45.0%
TGAAGTGCAGTATAGGACAG+CGG - chr8_4:54489700-54489719 Msa1334180:intron 45.0%
ACAGCGGGGAAATACAAATC+TGG - chr8_4:54489716-54489735 Msa1334180:intron 45.0%
TGAAGGATGGGAATCGATGA+AGG - chr8_4:54489754-54489773 Msa1334180:intron 45.0%
GGAATCGATGAAGGCAGTTA+AGG - chr8_4:54489763-54489782 Msa1334180:intron 45.0%
AGATTATCACGGGTCTCAGT+AGG - chr8_4:54489936-54489955 Msa1334180:intron 45.0%
CTGTTGGTATGTCAAATGGC+AGG - chr8_4:54490011-54490030 Msa1334180:intron 45.0%
GTTTGAAGGCTGTAATCCTC+CGG - chr8_4:54490128-54490147 Msa1334180:intron 45.0%
GCCAACAAAAATTCTCCTCC+TGG + chr8_4:54490163-54490182 None:intergenic 45.0%
AAGAAGGAGGTTCTTCACAG+AGG - chr8_4:54490385-54490404 Msa1334180:intron 45.0%
TCATGCCACATGAAGATGAG+CGG - chr8_4:54490449-54490468 Msa1334180:intron 45.0%
ATGATCCGCTCATCTTCATG+TGG + chr8_4:54490457-54490476 None:intergenic 45.0%
CAGCACGTAGCTGATATATC+TGG - chr8_4:54491502-54491521 Msa1334180:intron 45.0%
GTTAATCAGTCAGTGCACTC+AGG + chr8_4:54491657-54491676 None:intergenic 45.0%
!! GATGTATTTCTGTCGGCTTC+CGG - chr8_4:54492459-54492478 Msa1334180:CDS 45.0%
AAACTGGACAAAGCCCGAAA+TGG - chr8_4:54492592-54492611 Msa1334180:CDS 45.0%
AACTGGACAAAGCCCGAAAT+GGG - chr8_4:54492593-54492612 Msa1334180:CDS 45.0%
TACCAACCCTGATTGGAAGA+AGG - chr8_4:54492622-54492641 Msa1334180:CDS 45.0%
ACAGCTCCTTCTTCCAATCA+GGG + chr8_4:54492631-54492650 None:intergenic 45.0%
AACAGCTCCTTCTTCCAATC+AGG + chr8_4:54492632-54492651 None:intergenic 45.0%
CCTGAATGCACATCAACCAA+TGG + chr8_4:54492672-54492691 None:intergenic 45.0%
! CCATTGGTTGATGTGCATTC+AGG - chr8_4:54492669-54492688 Msa1334180:CDS 45.0%
GTGCATTCAGGAATAACAGG+AGG - chr8_4:54492681-54492700 Msa1334180:CDS 45.0%
TTCAGGAATAACAGGAGGGA+TGG - chr8_4:54492686-54492705 Msa1334180:CDS 45.0%
TAACAGAAGGGAAGCCAGTT+TGG + chr8_4:54492926-54492945 None:intergenic 45.0%
! CTTTAAGGGAAGCCTAACAG+TGG + chr8_4:54492989-54493008 None:intergenic 45.0%
!! ACCAGTTGGCACTGACTCTA+AGG - chr8_4:54489337-54489356 Msa1334180:three_prime_UTR 50.0%
ACCTTAGAGTCAGTGCCAAC+TGG + chr8_4:54489341-54489360 None:intergenic 50.0%
GGACACACGAGGATCAAATG+CGG + chr8_4:54489402-54489421 None:intergenic 50.0%
ATCTGGAGAATCATCCGGAG+GGG + chr8_4:54489630-54489649 None:intergenic 50.0%
GTATCTGGAGAATCATCCGG+AGG + chr8_4:54489632-54489651 None:intergenic 50.0%
GAAGTGCAGTATAGGACAGC+GGG - chr8_4:54489701-54489720 Msa1334180:intron 50.0%
AAGTGCAGTATAGGACAGCG+GGG - chr8_4:54489702-54489721 Msa1334180:intron 50.0%
CGATTCCCATCCTTCATCTG+TGG + chr8_4:54489750-54489769 None:intergenic 50.0%
ACGGGTCTCAGTAGGAGATT+TGG - chr8_4:54489944-54489963 Msa1334180:intron 50.0%
ATTGAGATTATCCGTGGGGC+TGG - chr8_4:54490094-54490113 Msa1334180:intron 50.0%
TTGAGATTATCCGTGGGGCT+GGG - chr8_4:54490095-54490114 Msa1334180:intron 50.0%
!! TTTTTGATGACCCAGCCCCA+CGG + chr8_4:54490108-54490127 None:intergenic 50.0%
AAGGAGGTTCTTCACAGAGG+TGG - chr8_4:54490388-54490407 Msa1334180:intron 50.0%
TGGTTGACGAGATTGCCCAA+GGG - chr8_4:54490548-54490567 Msa1334180:intron 50.0%
GGCGGCACTAAACCATATGT+TGG - chr8_4:54490588-54490607 Msa1334180:intron 50.0%
CAAGCGCGTCAACCAACATA+TGG + chr8_4:54490603-54490622 None:intergenic 50.0%
! CATATGTTGGTTGACGCGCT+TGG - chr8_4:54490601-54490620 Msa1334180:intron 50.0%
GGCACTAGCATCCAGAAAAG+GGG + chr8_4:54491070-54491089 None:intergenic 50.0%
CGGCACTAGCATCCAGAAAA+GGG + chr8_4:54491071-54491090 None:intergenic 50.0%
ACTTCAGTCCCCTGTGCTTA+AGG - chr8_4:54492066-54492085 Msa1334180:CDS 50.0%
AACCTCTGCCTTAAGCACAG+GGG + chr8_4:54492077-54492096 None:intergenic 50.0%
GAACCTCTGCCTTAAGCACA+GGG + chr8_4:54492078-54492097 None:intergenic 50.0%
AGAACCTCTGCCTTAAGCAC+AGG + chr8_4:54492079-54492098 None:intergenic 50.0%
ACTTCAGTCCCCTGTGCTTA+AGG - chr8_4:54492066-54492085 Msa1334180:CDS 50.0%
AACCTCTGCCTTAAGCACAG+GGG + chr8_4:54492077-54492096 None:intergenic 50.0%
GAACCTCTGCCTTAAGCACA+GGG + chr8_4:54492078-54492097 None:intergenic 50.0%
AGAACCTCTGCCTTAAGCAC+AGG + chr8_4:54492079-54492098 None:intergenic 50.0%
CTCCTTCTTCCAATCAGGGT+TGG + chr8_4:54492627-54492646 None:intergenic 50.0%
ACAGGTTCACAGATAGCTCC+AGG + chr8_4:54493225-54493244 None:intergenic 50.0%
GGGGTTTCGGGAAGATGAAG+AGG + chr8_4:54489032-54489051 None:intergenic 55.0%
TGCTGCAACACGGTCCACAA+TGG + chr8_4:54489102-54489121 None:intergenic 55.0%
! TCTGTTAGCCTCGGAGCATG+TGG - chr8_4:54489265-54489284 Msa1334180:three_prime_UTR 55.0%
TCCATGTTCCACATGCTCCG+AGG + chr8_4:54489276-54489295 None:intergenic 55.0%
GTCAGTGCCAACTGGTCCAT+CGG + chr8_4:54489333-54489352 None:intergenic 55.0%
AGAAACACAGCGGACACACG+AGG + chr8_4:54489413-54489432 None:intergenic 55.0%
! GAATCATCCGGAGGGGGTTT+TGG + chr8_4:54489623-54489642 None:intergenic 55.0%
TCTGGAGAATCATCCGGAGG+GGG + chr8_4:54489629-54489648 None:intergenic 55.0%
ATCCTCCGGATTGACAGTCC+AGG - chr8_4:54490142-54490161 Msa1334180:intron 55.0%
CTCCTCCTGGACTGTCAATC+CGG + chr8_4:54490150-54490169 None:intergenic 55.0%
CTTTGTGGGCAAGGTAGCGA+TGG - chr8_4:54490504-54490523 Msa1334180:intron 55.0%
GTGGTTGACGAGATTGCCCA+AGG - chr8_4:54490547-54490566 Msa1334180:intron 55.0%
TTGACGAGATTGCCCAAGGG+CGG - chr8_4:54490551-54490570 Msa1334180:intron 55.0%
ATGGTTTAGTGCCGCCTTCC+CGG + chr8_4:54490584-54490603 None:intergenic 55.0%
! ATGTTGGTTGACGCGCTTGG+TGG - chr8_4:54490604-54490623 Msa1334180:intron 55.0%
GCGGCACTAGCATCCAGAAA+AGG + chr8_4:54491072-54491091 None:intergenic 55.0%
TTTCTGGATGCTAGTGCCGC+TGG - chr8_4:54491072-54491091 Msa1334180:intron 55.0%
!! TTCTGTCGGCTTCCGGTTTC+TGG - chr8_4:54492466-54492485 Msa1334180:CDS 55.0%
GCCTCGGAGCATGTGGAACA+TGG - chr8_4:54489272-54489291 Msa1334180:three_prime_UTR 60.0%
TGCACCTCCAAAACCCCCTC+CGG - chr8_4:54489613-54489632 Msa1334180:CDS 60.0%
!! TCATCCGGAGGGGGTTTTGG+AGG + chr8_4:54489620-54489639 None:intergenic 60.0%
CTCCTGGACTGTCAATCCGG+AGG + chr8_4:54490147-54490166 None:intergenic 60.0%
CTCCGGATTGACAGTCCAGG+AGG - chr8_4:54490145-54490164 Msa1334180:intron 60.0%
AGATTGCCCAAGGGCGGCTT+TGG - chr8_4:54490557-54490576 Msa1334180:intron 60.0%
GTCCCCTGTGCTTAAGGCAG+AGG - chr8_4:54492072-54492091 Msa1334180:CDS 60.0%
GTCCCCTGTGCTTAAGGCAG+AGG - chr8_4:54492072-54492091 Msa1334180:CDS 60.0%
!! GCCCAAGGGCGGCTTTGGAC+CGG - chr8_4:54490562-54490581 Msa1334180:intron 70.0%
CCCGGTCCAAAGCCGCCCTT+GGG + chr8_4:54490566-54490585 None:intergenic 70.0%
!! CCCAAGGGCGGCTTTGGACC+GGG - chr8_4:54490563-54490582 Msa1334180:intron 70.0%
TCCCGGTCCAAAGCCGCCCT+TGG + chr8_4:54490567-54490586 None:intergenic 70.0%
!! AGGGCGGCTTTGGACCGGGA+AGG - chr8_4:54490567-54490586 Msa1334180:intron 70.0%
!! GCGGCTTTGGACCGGGAAGG+CGG - chr8_4:54490570-54490589 Msa1334180:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 54488960 54493266 54488960 ID=Msa1334180;Name=Msa1334180
chr8_4 mRNA 54488960 54493266 54488960 ID=Msa1334180-mRNA-1;Parent=Msa1334180;Name=Msa1334180-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.5|1|1|1|2|538|645
chr8_4 exon 54488960 54489687 54488960 ID=Msa1334180-mRNA-1:exon:16980;Parent=Msa1334180-mRNA-1
chr8_4 exon 54491519 54493266 54491519 ID=Msa1334180-mRNA-1:exon:16979;Parent=Msa1334180-mRNA-1
chr8_4 CDS 54491519 54493266 54491519 ID=Msa1334180-mRNA-1:cds;Parent=Msa1334180-mRNA-1
chr8_4 CDS 54489498 54489687 54489498 ID=Msa1334180-mRNA-1:cds;Parent=Msa1334180-mRNA-1
chr8_4 three_prime_UTR 54488960 54489497 54488960 ID=Msa1334180-mRNA-1:three_prime_utr;Parent=Msa1334180-mRNA-1
Gene Sequence

>Msa1334180

ATGCTTCGTTACATGTACAGAAAAGCATCACAATCATCCTTCATCTTCATCTCAAACAACTTACGCCATCCTCTTCATCTTCCCGAAACCCCTCACATTCACAAATCCCTCAAATTCTACCGCACACTATCTTCCATTTCCATTGTGGACCGTGTTGCAGCATCTTTACTTCCTACTCAAGAACCAACGTTAGTGTTTTCATCTTCTTCCACTTCAGGTAATGGTAACGGTGTTGATTTTCCCAAGGGTGAGTTTGATTTCGTCCCGCATTCTGGCTTCAAGAAATTTATTGTGAAGGTTAAGACTCTGTTAGCCTCGGAGCATGTGGAACATGGAAGTATATTGAGAATCAATTTACAAGGAAATATTTCCGATGGACCAGTTGGCACTGACTCTAAGGTATTGTCTTTACCTCAGCTAAGTGAAAACCTTATGAAAGCCGCATTTGATCCTCGTGTGTCCGCTGTGTTTCTTAACATAGTTGATTTTTATTGTGGTTGGGCTAAATGTGATGAAATTAGAAGACAGATATCAAATTTTAAAAAATCTGGTAAAAAGGTTATAGCTTTTATGGCTTCATTTTGGAGTTTTGAGCCTGTATTATGGTGTGAAGATAGATCATATTACATAGCTAGTGTATGTGATGAAATATATGCACCTCCAAAACCCCCTCCGGATGATTCTCCAGATACAAGTATTGATAGCCCTGTGAACACGGATTGTATTTATTACAATCTTGTTGAAGTGCAGTATAGGACAGCGGGGAAATACAAATCTGGACATTTAACCACAGATGAAGGATGGGAATCGATGAAGGCAGTTAAGGATGATATAAGATGTAACTGGCTTGTTATGGTTTCTTCTTCAAGGAAAATAAGAGAAGAGGAGATTCTAACTTTTTTTGGTAGTGAGGATTGTCGTGAAGTAGAAAATTGGATAGATTGTAAGTTACTTTCAGGGTTGATGGCTAGTGATAAGATTATCACGGGTCTCAGTAGGAGATTTGGACCACTGCTCGATTTCAAAGCATATTCACAAGTTAAAAAATGCACTGTTGGTATGTCAAATGGCAGGGAAAAGATCGGTGTTATTAGAGTTTGTGGATCCCACAATGAAAGTGCAATTCATGATTTGATTGAGATTATCCGTGGGGCTGGGTCATCAAAAAGTTTGAAGGCTGTAATCCTCCGGATTGACAGTCCAGGAGGAGAATTTTTGTTGGCTGATCAATTATGGAGAGAAGTCAACATTCTTGCTTCAAAGATACCAGTCGTTTCTTCATTATCAGACAAGGCAACTAGTGGTGCATATTTGATTGCAACTGGAGCAGGAACAATTGTTGCTGAGAAACTCACTTATACATGTCAAATTGGAGCGATAAACTCATTTCCAAACACTGAGAAGTTATACAAATACATTGGTTTTAAGAAGGAGGTTCTTCACAGAGGTGGTAAATATGCAGAATTATTTGAGGCTGATCATCGGCCAATCATGCCACATGAAGATGAGCGGATCATAAATGGGTTAGAAGAAGTTTACAAAGTCTTTGTGGGCAAGGTAGCGATGGCCAGATCGTTAAGTGTAGATGTGGTTGACGAGATTGCCCAAGGGCGGCTTTGGACCGGGAAGGCGGCACTAAACCATATGTTGGTTGACGCGCTTGGTGGTTTTTCACGCGCTGTTGCTATAGCCAAATTGAAGGCTAATATACCTCAAAATAGACCTATTAATCTGGTTGAACTCTCTGCTCTGGATGTTGTATGCCTTCAAAGGACTGTTGTTTTACTTATCAGAACACAACAAACTGGACAAAGCCCGAAATGGGTACTTATACCAACCCTGATTGGAAGAAGGAGCTGTTGTCAACATCAGTGTACTCCATTGGTTGATGTGCATTCAGGAATAACAGGAGGGATGGTCTCTTCAATTCAACAGTGA
Protein sequence

>Msa1334180

MLRYMYRKASQSSFIFISNNLRHPLHLPETPHIHKSLKFYRTLSSISIVDRVAASLLPTQEPTLVFSSSSTSGNGNGVDFPKGEFDFVPHSGFKKFIVKVKTLLASEHVEHGSILRINLQGNISDGPVGTDSKVLSLPQLSENLMKAAFDPRVSAVFLNIVDFYCGWAKCDEIRRQISNFKKSGKKVIAFMASFWSFEPVLWCEDRSYYIASVCDEIYAPPKPPPDDSPDTSIDSPVNTDCIYYNLVEVQYRTAGKYKSGHLTTDEGWESMKAVKDDIRCNWLVMVSSSRKIREEEILTFFGSEDCREVENWIDCKLLSGLMASDKIITGLSRRFGPLLDFKAYSQVKKCTVGMSNGREKIGVIRVCGSHNESAIHDLIEIIRGAGSSKSLKAVILRIDSPGGEFLLADQLWREVNILASKIPVVSSLSDKATSGAYLIATGAGTIVAEKLTYTCQIGAINSFPNTEKLYKYIGFKKEVLHRGGKYAELFEADHRPIMPHEDERIINGLEEVYKVFVGKVAMARSLSVDVVDEIAQGRLWTGKAALNHMLVDALGGFSRAVAIAKLKANIPQNRPINLVELSALDVVCLQRTVVLLIRTQQTGQSPKWVLIPTLIGRRSCCQHQCTPLVDVHSGITGGMVSSIQQ*