AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1222640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222640 MtrunA17_Chr4g0061881 44.815 540 249 13 75 582 67 589 5.25e-136 413
Msa1222640 MtrunA17_Chr2g0307851 41.996 531 270 9 79 583 84 602 4.58e-127 390
Msa1222640 MtrunA17_Chr4g0069071 39.894 376 206 6 130 494 5 371 6.08e-75 244
Msa1222640 MtrunA17_Chr4g0073611 35.197 304 160 8 149 445 2 275 1.18e-46 166
Msa1222640 MtrunA17_Chr5g0408331 31.856 361 159 12 76 429 32 312 2.88e-40 149
Msa1222640 MtrunA17_Chr4g0061841 33.007 306 112 7 148 442 8 231 5.30e-37 138
Msa1222640 MtrunA17_Chr4g0076561 37.255 204 100 3 337 539 10 186 2.74e-35 131
Msa1222640 MtrunA17_Chr5g0437391 30.460 348 179 9 210 553 12 300 7.91e-35 135
Msa1222640 MtrunA17_Chr8g0344851 41.885 191 95 6 411 594 1 182 2.10e-34 129
Msa1222640 MtrunA17_Chr4g0061831 52.294 109 51 1 473 581 9 116 2.18e-32 121
Msa1222640 MtrunA17_Chr4g0064001 43.537 147 68 3 436 582 4 135 1.63e-25 105
Msa1222640 MtrunA17_Chr8g0344821 44.444 99 53 1 484 582 11 107 2.60e-21 89.7
Msa1222640 MtrunA17_Chr4g0076571 55.128 78 26 1 144 221 1 69 5.02e-21 88.2
Msa1222640 MtrunA17_Chr5g0437441 52.222 90 37 3 107 193 7 93 1.56e-20 87.0
Msa1222640 MtrunA17_Chr8g0344831 43.750 112 58 2 326 432 7 118 1.71e-18 82.0
Msa1222640 MtrunA17_Chr4g0069081 47.500 80 42 0 506 585 1 80 1.21e-16 76.3
Msa1222640 MtrunA17_Chr5g0437451 35.507 138 68 4 443 578 30 148 1.72e-16 77.4
Msa1222640 MtrunA17_Chr4g0073621 61.017 59 21 1 526 582 1 59 3.31e-16 73.9
Msa1222640 MtrunA17_Chr5g0408341 63.462 52 19 0 531 582 1 52 2.92e-14 70.5
Msa1222640 MtrunA17_Chr4g0063991 49.254 67 33 1 338 403 1 67 1.50e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1222640 AT1G73990.1 38.644 590 319 13 22 582 32 607 7.71e-120 372
Msa1222640 AT1G73990.2 37.657 478 260 9 79 530 90 555 6.75e-94 302

Find 176 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATTTCGTCCCGCATTC+TGG 0.209844 8_1:+86939006 Msa1222640:CDS
GAAGATGAGCGGATCATAAA+TGG 0.215556 8_1:+86940254 Msa1222640:CDS
TGTGCTAAGAGCTTGCTTTA+AGG 0.216377 8_1:-86942795 None:intergenic
GCTTGACTCTGCTGTTTAAA+TGG 0.219189 8_1:+86942632 Msa1222640:three_prime_UTR
ATAGATTGTAAGTTACTTTC+AGG 0.238367 8_1:+86939690 Msa1222640:CDS
GATAGGCAAAATCACATTAT+AGG 0.245255 8_1:-86942938 None:intergenic
TTGTGAATGTGAGGGGTTTC+GGG 0.245290 8_1:-86938835 None:intergenic
TTTGTGAATGTGAGGGGTTT+CGG 0.257624 8_1:-86938836 None:intergenic
TATTAGCATGTAGATGATTT+AGG 0.257669 8_1:+86942538 Msa1222640:three_prime_UTR
TTGGTATAAGTACCCATTTC+GGG 0.263338 8_1:-86942399 None:intergenic
CTCACTTATACATGTCAAAT+TGG 0.274908 8_1:+86940104 Msa1222640:CDS
CCATTGGTTGATGTGCATTC+AGG 0.286389 8_1:+86942463 Msa1222640:CDS
GAGAGTTCAACCAGATTAAT+AGG 0.304701 8_1:-86940476 None:intergenic
AACAGCTCCTTCTTCCAATC+AGG 0.317463 8_1:-86942423 None:intergenic
AGATTGCCCAAGGGCGGCTT+TGG 0.320112 8_1:+86940351 Msa1222640:CDS
TACTTAGACATGACTTAGTT+TGG 0.326609 8_1:+86942694 Msa1222640:three_prime_UTR
ATGGTTTAGTGCCGCCTTCC+CGG 0.326877 8_1:-86940375 None:intergenic
ATGACTTAGTTTGGCCAAAC+TGG 0.336189 8_1:+86942703 Msa1222640:three_prime_UTR
TTGTATAACTTCTCAGTGTT+TGG 0.338375 8_1:-86940143 None:intergenic
AGGTATATTAGCCTTCAATT+TGG 0.345021 8_1:-86940444 None:intergenic
CATCACTGTTCAAATTTGAT+AGG 0.347256 8_1:-86942955 None:intergenic
GGGCTATCAATACTTGTATC+TGG 0.347744 8_1:-86939438 None:intergenic
TAAGTTACTTTCAGGGTTGA+TGG 0.351095 8_1:+86939698 Msa1222640:CDS
GTGCTAAGAGCTTGCTTTAA+GGG 0.353149 8_1:-86942794 None:intergenic
TAACAGAAGGGAAGCCAGTT+TGG 0.364170 8_1:-86942717 None:intergenic
ACCAGTTGGCACTGACTCTA+AGG 0.365682 8_1:+86939131 Msa1222640:CDS
TGTAGATGATTTAGGCCATT+TGG 0.369425 8_1:+86942546 Msa1222640:three_prime_UTR
TCCCGGTCCAAAGCCGCCCT+TGG 0.369925 8_1:-86940358 None:intergenic
TTGTTATGGTTTCTTCTTCA+AGG 0.372590 8_1:+86939601 Msa1222640:CDS
ATTGAGATTATCCGTGGGGC+TGG 0.376386 8_1:+86939888 Msa1222640:CDS
ATCGGTGTTATTAGAGTTTG+TGG 0.378619 8_1:+86939834 Msa1222640:CDS
CTGGTATGATTTGTTTGTCC+TGG 0.379188 8_1:+86942998 Msa1222640:three_prime_UTR
AAGATGTAACTGGCTTGTTA+TGG 0.382012 8_1:+86939587 Msa1222640:CDS
TCTTCTTCCACTTCAGGTAA+TGG 0.382352 8_1:+86938955 Msa1222640:CDS
ATTGTCGTGAAGTAGAAAAT+TGG 0.383838 8_1:+86939667 Msa1222640:CDS
TCATCTTCATGTGGCATGAT+TGG 0.388034 8_1:-86940239 None:intergenic
ACGGGTCTCAGTAGGAGATT+TGG 0.389865 8_1:+86939738 Msa1222640:CDS
GCCCAAGGGCGGCTTTGGAC+CGG 0.392493 8_1:+86940356 Msa1222640:CDS
TCAAAATAGACCTATTAATC+TGG 0.409814 8_1:+86940466 Msa1222640:CDS
AAACTGGACAAAGCCCGAAA+TGG 0.415642 8_1:+86942386 Msa1222640:CDS
GTTGGTATAAGTACCCATTT+CGG 0.416903 8_1:-86942400 None:intergenic
CTTATCAGAACACAACAAAC+TGG 0.418408 8_1:+86942370 Msa1222640:CDS
CTCCTCCTGGACTGTCAATC+CGG 0.422871 8_1:-86939941 None:intergenic
ATGAATTGCACTTTCATTGT+GGG 0.423524 8_1:-86939859 None:intergenic
AAGTAAAGATCGATGACAAT+AGG 0.426110 8_1:-86942676 None:intergenic
CCCAAGGGCGGCTTTGGACC+GGG 0.429403 8_1:+86940357 Msa1222640:CDS
TATGTTTGTGCATTATTGTC+TGG 0.433909 8_1:+86942979 Msa1222640:three_prime_UTR
GATGTGCATTCAGGAATAAC+AGG 0.437794 8_1:+86942472 Msa1222640:CDS
GGTGCATATTTGATTGCAAC+TGG 0.441687 8_1:+86940056 Msa1222640:CDS
CCCGGTCCAAAGCCGCCCTT+GGG 0.444189 8_1:-86940357 None:intergenic
GTAAAACAACAGTCCTTTGA+AGG 0.445649 8_1:-86942348 None:intergenic
GAAGTTTACAAAGTCTTTGT+GGG 0.446335 8_1:+86940284 Msa1222640:CDS
AACTGGACAAAGCCCGAAAT+GGG 0.447850 8_1:+86942387 Msa1222640:CDS
GATCAAATGCGGCTTTCATA+AGG 0.449687 8_1:-86939182 None:intergenic
GGAATCGATGAAGGCAGTTA+AGG 0.451737 8_1:+86939557 Msa1222640:CDS
TATTTGATTGCAACTGGAGC+AGG 0.455192 8_1:+86940062 Msa1222640:CDS
AACACGGTCCACAATGGAAA+TGG 0.473603 8_1:-86938887 None:intergenic
TAAATACAATCCGTGTTCAC+AGG 0.476299 8_1:-86939459 None:intergenic
TAGTGTGCGGTAGAATTTGA+GGG 0.478545 8_1:-86938860 None:intergenic
CACATCTACACTTAACGATC+TGG 0.479653 8_1:-86940321 None:intergenic
GACGAAATCAAACTCACCCT+TGG 0.479725 8_1:-86938995 None:intergenic
ACCTTAGAGTCAGTGCCAAC+TGG 0.479839 8_1:-86939132 None:intergenic
TAGATTGTAAGTTACTTTCA+GGG 0.480160 8_1:+86939691 Msa1222640:CDS
AGAAGTTTACAAAGTCTTTG+TGG 0.483301 8_1:+86940283 Msa1222640:CDS
ACCGTTACCATTACCTGAAG+TGG 0.483377 8_1:-86938962 None:intergenic
TTGAGATTATCCGTGGGGCT+GGG 0.490077 8_1:+86939889 Msa1222640:CDS
CTTCAAGAAATTTATTGTGA+AGG 0.493765 8_1:+86939029 Msa1222640:CDS
CATGAATTGCACTTTCATTG+TGG 0.495107 8_1:-86939860 None:intergenic
CTATCTTCACACCATAATAC+AGG 0.496409 8_1:-86939348 None:intergenic
ATCTTGTTGAAGTGCAGTAT+AGG 0.498853 8_1:+86939487 Msa1222640:CDS
AACTAGCATATAAAACCAAA+TGG 0.499171 8_1:-86942561 None:intergenic
GTACTTATACCAACCCTGAT+TGG 0.505029 8_1:+86942409 Msa1222640:CDS
CTTCTGTTAAAGCAAGCTCT+TGG 0.507466 8_1:+86942731 Msa1222640:three_prime_UTR
ATAGTGTGCGGTAGAATTTG+AGG 0.507587 8_1:-86938861 None:intergenic
CTTGTATCTGGAGAATCATC+CGG 0.508155 8_1:-86939426 None:intergenic
AGGATGATATAAGATGTAAC+TGG 0.510806 8_1:+86939577 Msa1222640:CDS
GAAGTGCAGTATAGGACAGC+GGG 0.512732 8_1:+86939495 Msa1222640:CDS
TGTTGCTATAGCCAAATTGA+AGG 0.514181 8_1:+86940433 Msa1222640:CDS
ACAGCGGGGAAATACAAATC+TGG 0.516542 8_1:+86939510 Msa1222640:CDS
CAAGAGCTTGCTTTAACAGA+AGG 0.519724 8_1:-86942730 None:intergenic
CAAGCGCGTCAACCAACATA+TGG 0.522040 8_1:-86940394 None:intergenic
ATGTTGGTTGACGCGCTTGG+TGG 0.522308 8_1:+86940398 Msa1222640:CDS
CGTTTCTTCATTATCAGACA+AGG 0.522976 8_1:+86940025 Msa1222640:CDS
TGCACTGTTGGTATGTCAAA+TGG 0.523328 8_1:+86939801 Msa1222640:CDS
CTCCTTCTTCCAATCAGGGT+TGG 0.525262 8_1:-86942418 None:intergenic
ATTTCTTGAAGCCAGAATGC+GGG 0.525455 8_1:-86939017 None:intergenic
TCAACATCAGTGTACTCCAT+TGG 0.529318 8_1:+86942447 Msa1222640:CDS
ACGAAATCAAACTCACCCTT+GGG 0.529474 8_1:-86938994 None:intergenic
GTTTGAAGGCTGTAATCCTC+CGG 0.530693 8_1:+86939922 Msa1222640:CDS
TTACAAGGAAATATTTCCGA+TGG 0.530898 8_1:+86939108 Msa1222640:CDS
TTACAAAGTCTTTGTGGGCA+AGG 0.531876 8_1:+86940289 Msa1222640:CDS
AAGATGAGCGGATCATAAAT+GGG 0.535057 8_1:+86940255 Msa1222640:CDS
TAAATATGCAGAATTATTTG+AGG 0.535075 8_1:+86940205 Msa1222640:CDS
GTCAGTGCCAACTGGTCCAT+CGG 0.538824 8_1:-86939124 None:intergenic
TGAAGGATGGGAATCGATGA+AGG 0.539636 8_1:+86939548 Msa1222640:CDS
GGACATTTAACCACAGATGA+AGG 0.540268 8_1:+86939531 Msa1222640:CDS
ACTATCTTCCATTTCCATTG+TGG 0.545148 8_1:+86938879 Msa1222640:CDS
GTTGTTTGAGATGAAGATGA+AGG 0.549690 8_1:-86938791 None:intergenic
GCCTCGGAGCATGTGGAACA+TGG 0.549933 8_1:+86939066 Msa1222640:CDS
CTCAAAACAGTATCAAATCC+AGG 0.550202 8_1:-86942605 None:intergenic
AGATTATCACGGGTCTCAGT+AGG 0.550801 8_1:+86939730 Msa1222640:CDS
GCGGCTTTGGACCGGGAAGG+CGG 0.553063 8_1:+86940364 Msa1222640:CDS
ACTAACGTTGGTTCTTGAGT+AGG 0.554396 8_1:-86938925 None:intergenic
TTCAAGGAAAATAAGAGAAG+AGG 0.555199 8_1:+86939617 Msa1222640:CDS
AGGGCGGCTTTGGACCGGGA+AGG 0.558400 8_1:+86940361 Msa1222640:CDS
GATTTGATTGAGATTATCCG+TGG 0.559731 8_1:+86939882 Msa1222640:CDS
CTGTTGGTATGTCAAATGGC+AGG 0.562620 8_1:+86939805 Msa1222640:CDS
TCCACTTCAGGTAATGGTAA+CGG 0.563991 8_1:+86938961 Msa1222640:CDS
TCTGTTAGCCTCGGAGCATG+TGG 0.564327 8_1:+86939059 Msa1222640:CDS
ACAGGTTCACAGATAGCTCC+AGG 0.568791 8_1:-86943016 None:intergenic
TCTGATAATGAAGAAACGAC+TGG 0.568882 8_1:-86940020 None:intergenic
ATTTAACCACAGATGAAGGA+TGG 0.568911 8_1:+86939535 Msa1222640:CDS
GAGAAGTTATACAAATACAT+TGG 0.571158 8_1:+86940152 Msa1222640:CDS
ATAACACAGTTCAAAACTGA+TGG 0.572477 8_1:-86942882 None:intergenic
TACCAACCCTGATTGGAAGA+AGG 0.572792 8_1:+86942416 Msa1222640:CDS
GGGGTTTCGGGAAGATGAAG+AGG 0.574598 8_1:-86938823 None:intergenic
AAATACAATCCGTGTTCACA+GGG 0.575360 8_1:-86939458 None:intergenic
ATTACTAATGTAGAGAGTGA+AGG 0.576126 8_1:-86942832 None:intergenic
TTCAGGAATAACAGGAGGGA+TGG 0.577523 8_1:+86942480 Msa1222640:CDS
ATATTGAGAATCAATTTACA+AGG 0.578147 8_1:+86939093 Msa1222640:CDS
TGAGGGATTTGTGAATGTGA+GGG 0.580001 8_1:-86938843 None:intergenic
GCTAGTGATAAGATTATCAC+GGG 0.582665 8_1:+86939720 Msa1222640:CDS
ACAGCTCCTTCTTCCAATCA+GGG 0.583747 8_1:-86942422 None:intergenic
GTGGTTGACGAGATTGCCCA+AGG 0.585641 8_1:+86940341 Msa1222640:CDS
AATTATTTGAGGCTGATCAT+CGG 0.586001 8_1:+86940216 Msa1222640:CDS
TTGACGAGATTGCCCAAGGG+CGG 0.586860 8_1:+86940345 Msa1222640:CDS
ATCCTCCGGATTGACAGTCC+AGG 0.587117 8_1:+86939936 Msa1222640:CDS
TATTGATAGCCCTGTGAACA+CGG 0.587964 8_1:+86939449 Msa1222640:CDS
CTTTGTGGGCAAGGTAGCGA+TGG 0.589923 8_1:+86940298 Msa1222640:CDS
AAGAGCTTGCTTTAACAGAA+GGG 0.590552 8_1:-86942729 None:intergenic
TGGATGTTGTATGCCTTCAA+AGG 0.592887 8_1:+86942335 Msa1222640:CDS
CGATTCCCATCCTTCATCTG+TGG 0.594942 8_1:-86939541 None:intergenic
GGCGGCACTAAACCATATGT+TGG 0.595197 8_1:+86940382 Msa1222640:CDS
GGCTAGTGATAAGATTATCA+CGG 0.596190 8_1:+86939719 Msa1222640:CDS
GGTTAAGACTCTGTTAGCCT+CGG 0.596334 8_1:+86939050 Msa1222640:CDS
AATATTTCCGATGGACCAGT+TGG 0.597583 8_1:+86939117 Msa1222640:CDS
TCTGGAGAATCATCCGGAGG+GGG 0.598601 8_1:-86939420 None:intergenic
CATATGTTGGTTGACGCGCT+TGG 0.602640 8_1:+86940395 Msa1222640:CDS
TTTAACCACAGATGAAGGAT+GGG 0.605296 8_1:+86939536 Msa1222640:CDS
TTGAGGGATTTGTGAATGTG+AGG 0.606072 8_1:-86938844 None:intergenic
GAGGGATTTGTGAATGTGAG+GGG 0.607039 8_1:-86938842 None:intergenic
CTCCTGGACTGTCAATCCGG+AGG 0.612922 8_1:-86939938 None:intergenic
TGTTGGTATGTCAAATGGCA+GGG 0.616785 8_1:+86939806 Msa1222640:CDS
AATTTCTTGAAGCCAGAATG+CGG 0.621440 8_1:-86939018 None:intergenic
TTCAAAAGTTGACAGAGTGA+AGG 0.622058 8_1:-86942915 None:intergenic
TGCTGCAACACGGTCCACAA+TGG 0.622831 8_1:-86938893 None:intergenic
TATCTGGAGAATCATCCGGA+GGG 0.623341 8_1:-86939422 None:intergenic
TCAAATGGCAGGGAAAAGAT+CGG 0.628546 8_1:+86939816 Msa1222640:CDS
AAGGAGGTTCTTCACAGAGG+TGG 0.630578 8_1:+86940182 Msa1222640:CDS
GAAGATGAAAACACTAACGT+TGG 0.631994 8_1:-86938937 None:intergenic
ATGATCCGCTCATCTTCATG+TGG 0.633308 8_1:-86940248 None:intergenic
ATCTGGAGAATCATCCGGAG+GGG 0.638622 8_1:-86939421 None:intergenic
TTATCAGACAAGGCAACTAG+TGG 0.639169 8_1:+86940035 Msa1222640:CDS
GTGCATTCAGGAATAACAGG+AGG 0.649237 8_1:+86942475 Msa1222640:CDS
CCTGAATGCACATCAACCAA+TGG 0.649333 8_1:-86942463 None:intergenic
ATAATAAACTCAACTCACAC+AGG 0.658801 8_1:-86943034 None:intergenic
CAGATCGTTAAGTGTAGATG+TGG 0.659544 8_1:+86940322 Msa1222640:CDS
GTATCTGGAGAATCATCCGG+AGG 0.659830 8_1:-86939423 None:intergenic
ATTTGATTGAGATTATCCGT+GGG 0.666741 8_1:+86939883 Msa1222640:CDS
AGAAACACAGCGGACACACG+AGG 0.667158 8_1:-86939204 None:intergenic
TGCATTCAGGAATAACAGGA+GGG 0.668569 8_1:+86942476 Msa1222640:CDS
TTTCGGGAAGATGAAGAGGA+TGG 0.668798 8_1:-86938819 None:intergenic
TCATGCCACATGAAGATGAG+CGG 0.671782 8_1:+86940243 Msa1222640:CDS
AAGAAGGAGGTTCTTCACAG+AGG 0.681303 8_1:+86940179 Msa1222640:CDS
CTCCGGATTGACAGTCCAGG+AGG 0.681617 8_1:+86939939 Msa1222640:CDS
TGGTTGACGAGATTGCCCAA+GGG 0.693802 8_1:+86940342 Msa1222640:CDS
GAAGTAAAGATGCTGCAACA+CGG 0.695209 8_1:-86938903 None:intergenic
TCCATGTTCCACATGCTCCG+AGG 0.700945 8_1:-86939067 None:intergenic
CTTTAAGGGAAGCCTAACAG+TGG 0.711846 8_1:-86942780 None:intergenic
TATGCTTTGAAATCGAGCAG+TGG 0.712517 8_1:-86939762 None:intergenic
TGGAAATGGAAGATAGTGTG+CGG 0.715103 8_1:-86938873 None:intergenic
TGAAGTGCAGTATAGGACAG+CGG 0.718438 8_1:+86939494 Msa1222640:CDS
AACTATGTTAAGAAACACAG+CGG 0.736652 8_1:-86939214 None:intergenic
AAGTGCAGTATAGGACAGCG+GGG 0.749747 8_1:+86939496 Msa1222640:CDS
TTTGATTGAGATTATCCGTG+GGG 0.755479 8_1:+86939884 Msa1222640:CDS
GGACACACGAGGATCAAATG+CGG 0.763717 8_1:-86939193 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCAAATTTTAAAAAATC+TGG + chr8_1:86939282-86939301 Msa1222640:CDS 10.0%
!!! TTTTAAAAAATCTGGTAAAA+AGG + chr8_1:86939290-86939309 Msa1222640:CDS 15.0%
!! ATATTGAGAATCAATTTACA+AGG + chr8_1:86939093-86939112 Msa1222640:CDS 20.0%
!!! AACATAGTTGATTTTTATTG+TGG + chr8_1:86939228-86939247 Msa1222640:CDS 20.0%
!!! TAAAAAGGTTATAGCTTTTA+TGG + chr8_1:86939305-86939324 Msa1222640:CDS 20.0%
!! TAAATATGCAGAATTATTTG+AGG + chr8_1:86940205-86940224 Msa1222640:CDS 20.0%
!!! ACTATTTTTCTTTCTTTTAC+TGG + chr8_1:86940532-86940551 Msa1222640:intron 20.0%
!! GAAAAAAACCTTACAAAATT+GGG - chr8_1:86940666-86940685 None:intergenic 20.0%
!! AGAAAAAAACCTTACAAAAT+TGG - chr8_1:86940667-86940686 None:intergenic 20.0%
!!! TTTGTAAGGTTTTTTTCTTT+TGG + chr8_1:86940669-86940688 Msa1222640:intron 20.0%
!! AATTTAATATTCTTCCTTCA+AGG + chr8_1:86941015-86941034 Msa1222640:intron 20.0%
!!! TTTTTAAAGTAATTAGCGTA+TGG - chr8_1:86941332-86941351 None:intergenic 20.0%
!! AAAAACATAGAATTCAAAAC+AGG - chr8_1:86941567-86941586 None:intergenic 20.0%
!!! AATTTTCTAAAATCAAGGAA+TGG - chr8_1:86941962-86941981 None:intergenic 20.0%
!!! ATTCCTTGATTTTAGAAAAT+TGG + chr8_1:86941961-86941980 Msa1222640:intron 20.0%
!!! AATTTTCTAAAATCAAGGAA+TGG - chr8_1:86941962-86941981 None:intergenic 20.0%
!!! ATTCCTTGATTTTAGAAAAT+TGG + chr8_1:86941961-86941980 Msa1222640:intron 20.0%
!!! GTTTGTAAATTTTAGACTTA+TGG + chr8_1:86942282-86942301 Msa1222640:intron 20.0%
! CTTCAAGAAATTTATTGTGA+AGG + chr8_1:86939029-86939048 Msa1222640:CDS 25.0%
!!! TAGTTGATTTTTATTGTGGT+TGG + chr8_1:86939232-86939251 Msa1222640:CDS 25.0%
!!! AGTTGATTTTTATTGTGGTT+GGG + chr8_1:86939233-86939252 Msa1222640:CDS 25.0%
!! ATAGATTGTAAGTTACTTTC+AGG + chr8_1:86939690-86939709 Msa1222640:CDS 25.0%
!! TAGATTGTAAGTTACTTTCA+GGG + chr8_1:86939691-86939710 Msa1222640:CDS 25.0%
! GAGAAGTTATACAAATACAT+TGG + chr8_1:86940152-86940171 Msa1222640:CDS 25.0%
!!! CAAATACATTGGTTTTAAGA+AGG + chr8_1:86940163-86940182 Msa1222640:CDS 25.0%
!! AGATTAATAGGTCTATTTTG+AGG - chr8_1:86940467-86940486 None:intergenic 25.0%
! TCAAAATAGACCTATTAATC+TGG + chr8_1:86940466-86940485 Msa1222640:CDS 25.0%
!!! TATGTTTTTTTGCTGAAAAG+TGG + chr8_1:86940573-86940592 Msa1222640:intron 25.0%
!!! AACTTTTTCCCAATTTTGTA+AGG + chr8_1:86940655-86940674 Msa1222640:intron 25.0%
!! GACTTTTAAATTGGATAGTT+TGG + chr8_1:86940698-86940717 Msa1222640:intron 25.0%
! GGGAAAAAACAAACAAAAAA+GGG - chr8_1:86940844-86940863 None:intergenic 25.0%
!!! ATTTTCTCTGAGAACTAAAA+AGG + chr8_1:86941125-86941144 Msa1222640:intron 25.0%
! TGAAATAACACTATAATGAC+CGG - chr8_1:86941515-86941534 None:intergenic 25.0%
!!! TTACCAGTAATTTTTTTGCT+AGG + chr8_1:86941907-86941926 Msa1222640:intron 25.0%
! AATCCTAGCAAAAAAATTAC+TGG - chr8_1:86941913-86941932 None:intergenic 25.0%
!!! AGTAATTTTTTTGCTAGGAT+TGG + chr8_1:86941912-86941931 Msa1222640:intron 25.0%
!!! GAACCAATTTTCTAAAATCA+AGG - chr8_1:86941967-86941986 None:intergenic 25.0%
!!! TTACCAGTAATTTTTTTGCT+AGG + chr8_1:86941907-86941926 Msa1222640:intron 25.0%
! AATCCTAGCAAAAAAATTAC+TGG - chr8_1:86941913-86941932 None:intergenic 25.0%
!!! AGTAATTTTTTTGCTAGGAT+TGG + chr8_1:86941912-86941931 Msa1222640:intron 25.0%
!!! GAACCAATTTTCTAAAATCA+AGG - chr8_1:86941967-86941986 None:intergenic 25.0%
! AAAATTTACAAACCAGAAAC+CGG - chr8_1:86942275-86942294 None:intergenic 25.0%
! TGCAGAAAAAAGAAAACAAA+TGG - chr8_1:86942312-86942331 None:intergenic 25.0%
! TATTAGCATGTAGATGATTT+AGG + chr8_1:86942538-86942557 Msa1222640:three_prime_UTR 25.0%
! AACTAGCATATAAAACCAAA+TGG - chr8_1:86942564-86942583 None:intergenic 25.0%
!!! TATATGCTAGTTTTTTAGTG+TGG + chr8_1:86942572-86942591 Msa1222640:three_prime_UTR 25.0%
!!! ATATGCTAGTTTTTTAGTGT+GGG + chr8_1:86942573-86942592 Msa1222640:three_prime_UTR 25.0%
TTACAAGGAAATATTTCCGA+TGG + chr8_1:86939108-86939127 Msa1222640:CDS 30.0%
AACTATGTTAAGAAACACAG+CGG - chr8_1:86939217-86939236 None:intergenic 30.0%
! TAGCTTTTATGGCTTCATTT+TGG + chr8_1:86939316-86939335 Msa1222640:CDS 30.0%
AGGATGATATAAGATGTAAC+TGG + chr8_1:86939577-86939596 Msa1222640:CDS 30.0%
TTGTTATGGTTTCTTCTTCA+AGG + chr8_1:86939601-86939620 Msa1222640:CDS 30.0%
TTCAAGGAAAATAAGAGAAG+AGG + chr8_1:86939617-86939636 Msa1222640:CDS 30.0%
!!! GAGGAGATTCTAACTTTTTT+TGG + chr8_1:86939636-86939655 Msa1222640:CDS 30.0%
!!! TCTAACTTTTTTTGGTAGTG+AGG + chr8_1:86939644-86939663 Msa1222640:CDS 30.0%
ATTGTCGTGAAGTAGAAAAT+TGG + chr8_1:86939667-86939686 Msa1222640:CDS 30.0%
CAAGTTAAAAAATGCACTGT+TGG + chr8_1:86939789-86939808 Msa1222640:CDS 30.0%
ATGAATTGCACTTTCATTGT+GGG - chr8_1:86939862-86939881 None:intergenic 30.0%
ATTTGATTGAGATTATCCGT+GGG + chr8_1:86939883-86939902 Msa1222640:CDS 30.0%
!! TTTTGTTGGCTGATCAATTA+TGG + chr8_1:86939967-86939986 Msa1222640:CDS 30.0%
CTCACTTATACATGTCAAAT+TGG + chr8_1:86940104-86940123 Msa1222640:CDS 30.0%
TTGTATAACTTCTCAGTGTT+TGG - chr8_1:86940146-86940165 None:intergenic 30.0%
!!! ATACATTGGTTTTAAGAAGG+AGG + chr8_1:86940166-86940185 Msa1222640:CDS 30.0%
! AATTATTTGAGGCTGATCAT+CGG + chr8_1:86940216-86940235 Msa1222640:CDS 30.0%
AGAAGTTTACAAAGTCTTTG+TGG + chr8_1:86940283-86940302 Msa1222640:CDS 30.0%
GAAGTTTACAAAGTCTTTGT+GGG + chr8_1:86940284-86940303 Msa1222640:CDS 30.0%
!! AGGTATATTAGCCTTCAATT+TGG - chr8_1:86940447-86940466 None:intergenic 30.0%
! CGTAATTTAAGGTTTAAACG+AGG + chr8_1:86940501-86940520 Msa1222640:intron 30.0%
!! TTTTACTGGTTGAACTCTTT+GGG + chr8_1:86940546-86940565 Msa1222640:intron 30.0%
ATGCATTCTTGTGTTTGTAT+AGG + chr8_1:86940603-86940622 Msa1222640:intron 30.0%
!!! GGTTTTTTTCTTTTGGAAAG+TGG + chr8_1:86940676-86940695 Msa1222640:intron 30.0%
!! TGGAAAGTGGACTTTTAAAT+TGG + chr8_1:86940689-86940708 Msa1222640:intron 30.0%
ACGTTCTACAAATGATTCAT+TGG - chr8_1:86940813-86940832 None:intergenic 30.0%
GGGGAAAAAACAAACAAAAA+AGG - chr8_1:86940845-86940864 None:intergenic 30.0%
! AAGCAAAGAGAATTCAAGTT+TGG - chr8_1:86940967-86940986 None:intergenic 30.0%
TTCTCTTTGCTTTGCAATAT+TGG + chr8_1:86940975-86940994 Msa1222640:intron 30.0%
TTGAATGAGATTTCAACAAG+TGG + chr8_1:86941065-86941084 Msa1222640:intron 30.0%
TGAATGAGATTTCAACAAGT+GGG + chr8_1:86941066-86941085 Msa1222640:intron 30.0%
AATAAATGCAAACAAGAGCT+TGG - chr8_1:86941219-86941238 None:intergenic 30.0%
! AGCTCTTGTTTGCATTTATT+TGG + chr8_1:86941219-86941238 Msa1222640:intron 30.0%
GACTTAAACATTCTCAAAAC+TGG - chr8_1:86941263-86941282 None:intergenic 30.0%
! AGTTTTTGTATGACACATAC+CGG + chr8_1:86941493-86941512 Msa1222640:intron 30.0%
! TTTTATGCTCAACTTGTACA+TGG + chr8_1:86941586-86941605 Msa1222640:intron 30.0%
! AGGGATACACAAATTTTACA+TGG - chr8_1:86941700-86941719 None:intergenic 30.0%
AATGATATTGTCAACCTTCA+TGG - chr8_1:86941737-86941756 None:intergenic 30.0%
! GCATTGACACTTAAATTGAA+TGG - chr8_1:86941835-86941854 None:intergenic 30.0%
! ACTGTTTGATGTATTTCTGT+CGG + chr8_1:86941990-86942009 Msa1222640:intron 30.0%
! GCATTGACACTTAAATTGAA+TGG - chr8_1:86941835-86941854 None:intergenic 30.0%
! ACTGTTTGATGTATTTCTGT+CGG + chr8_1:86941990-86942009 Msa1222640:intron 30.0%
AAGTAAAGATCGATGACAAT+AGG - chr8_1:86942679-86942698 None:intergenic 30.0%
TACTTAGACATGACTTAGTT+TGG + chr8_1:86942694-86942713 Msa1222640:three_prime_UTR 30.0%
ATTACTAATGTAGAGAGTGA+AGG - chr8_1:86942835-86942854 None:intergenic 30.0%
ATAACACAGTTCAAAACTGA+TGG - chr8_1:86942885-86942904 None:intergenic 30.0%
GATAGGCAAAATCACATTAT+AGG - chr8_1:86942941-86942960 None:intergenic 30.0%
CATCACTGTTCAAATTTGAT+AGG - chr8_1:86942958-86942977 None:intergenic 30.0%
TATGTTTGTGCATTATTGTC+TGG + chr8_1:86942979-86942998 Msa1222640:three_prime_UTR 30.0%
ATAATAAACTCAACTCACAC+AGG - chr8_1:86943037-86943056 None:intergenic 30.0%
! GTTGTTTGAGATGAAGATGA+AGG - chr8_1:86938794-86938813 None:intergenic 35.0%
ACTATCTTCCATTTCCATTG+TGG + chr8_1:86938879-86938898 Msa1222640:CDS 35.0%
GAAGATGAAAACACTAACGT+TGG - chr8_1:86938940-86938959 None:intergenic 35.0%
! TTTTCATCTTCTTCCACTTC+AGG + chr8_1:86938949-86938968 Msa1222640:CDS 35.0%
AATTTCTTGAAGCCAGAATG+CGG - chr8_1:86939021-86939040 None:intergenic 35.0%
! ATAAGGTTTTCACTTAGCTG+AGG - chr8_1:86939168-86939187 None:intergenic 35.0%
CTATCTTCACACCATAATAC+AGG - chr8_1:86939351-86939370 None:intergenic 35.0%
AAATACAATCCGTGTTCACA+GGG - chr8_1:86939461-86939480 None:intergenic 35.0%
TAAATACAATCCGTGTTCAC+AGG - chr8_1:86939462-86939481 None:intergenic 35.0%
ATCTTGTTGAAGTGCAGTAT+AGG + chr8_1:86939487-86939506 Msa1222640:CDS 35.0%
ATTTAACCACAGATGAAGGA+TGG + chr8_1:86939535-86939554 Msa1222640:CDS 35.0%
TTTAACCACAGATGAAGGAT+GGG + chr8_1:86939536-86939555 Msa1222640:CDS 35.0%
!! AAGATGTAACTGGCTTGTTA+TGG + chr8_1:86939587-86939606 Msa1222640:CDS 35.0%
! TAAGTTACTTTCAGGGTTGA+TGG + chr8_1:86939698-86939717 Msa1222640:CDS 35.0%
GGCTAGTGATAAGATTATCA+CGG + chr8_1:86939719-86939738 Msa1222640:CDS 35.0%
GCTAGTGATAAGATTATCAC+GGG + chr8_1:86939720-86939739 Msa1222640:CDS 35.0%
!! ATCGGTGTTATTAGAGTTTG+TGG + chr8_1:86939834-86939853 Msa1222640:CDS 35.0%
CATGAATTGCACTTTCATTG+TGG - chr8_1:86939863-86939882 None:intergenic 35.0%
GATTTGATTGAGATTATCCG+TGG + chr8_1:86939882-86939901 Msa1222640:CDS 35.0%
TTTGATTGAGATTATCCGTG+GGG + chr8_1:86939884-86939903 Msa1222640:CDS 35.0%
TGGGTCATCAAAAAGTTTGA+AGG + chr8_1:86939908-86939927 Msa1222640:CDS 35.0%
! TCTGATAATGAAGAAACGAC+TGG - chr8_1:86940023-86940042 None:intergenic 35.0%
CGTTTCTTCATTATCAGACA+AGG + chr8_1:86940025-86940044 Msa1222640:CDS 35.0%
AAGATGAGCGGATCATAAAT+GGG + chr8_1:86940255-86940274 Msa1222640:CDS 35.0%
TGTTGCTATAGCCAAATTGA+AGG + chr8_1:86940433-86940452 Msa1222640:CDS 35.0%
GAGAGTTCAACCAGATTAAT+AGG - chr8_1:86940479-86940498 None:intergenic 35.0%
TGAACTCTCTGCGTAATTTA+AGG + chr8_1:86940490-86940509 Msa1222640:intron 35.0%
!! CTTTTACTGGTTGAACTCTT+TGG + chr8_1:86940545-86940564 Msa1222640:intron 35.0%
TTGGATAGTTTGGATAGTCA+TGG + chr8_1:86940708-86940727 Msa1222640:intron 35.0%
!!! GTTTGTTTTTTCCCCTTTTC+TGG + chr8_1:86940850-86940869 Msa1222640:intron 35.0%
!! GTGATCAAATTTTAGTCCAG+CGG - chr8_1:86940885-86940904 None:intergenic 35.0%
AGTAACAAGTGCTTAGTTGT+TGG - chr8_1:86940931-86940950 None:intergenic 35.0%
TCTTTGCTTTGCAATATTGG+TGG + chr8_1:86940978-86940997 Msa1222640:intron 35.0%
! GCAATATTGGTGGTATCTAA+TGG + chr8_1:86940988-86941007 Msa1222640:intron 35.0%
AATATTCTTCCTTCAAGGAC+AGG + chr8_1:86941020-86941039 Msa1222640:intron 35.0%
! TCTGATAGTGCAGTGTTATT+TGG + chr8_1:86941368-86941387 Msa1222640:intron 35.0%
TATGTACGTGAAGAATCGTT+TGG - chr8_1:86941428-86941447 None:intergenic 35.0%
! CACTGACTGATTAACTTGAT+AGG + chr8_1:86941456-86941475 Msa1222640:intron 35.0%
CATGGATAGTTAGGAATAGA+GGG - chr8_1:86941719-86941738 None:intergenic 35.0%
TCATGGATAGTTAGGAATAG+AGG - chr8_1:86941720-86941739 None:intergenic 35.0%
CTATTCCTAACTATCCATGA+AGG + chr8_1:86941720-86941739 Msa1222640:intron 35.0%
GGAATGGCATTAGTAGTTTA+CGG - chr8_1:86941946-86941965 None:intergenic 35.0%
GGAATGGCATTAGTAGTTTA+CGG - chr8_1:86941946-86941965 None:intergenic 35.0%
! GTTTTCTTTTTTCTGCAGTC+TGG + chr8_1:86942315-86942334 Msa1222640:intron 35.0%
GTAAAACAACAGTCCTTTGA+AGG - chr8_1:86942351-86942370 None:intergenic 35.0%
CTTATCAGAACACAACAAAC+TGG + chr8_1:86942370-86942389 Msa1222640:CDS 35.0%
TTGGTATAAGTACCCATTTC+GGG - chr8_1:86942402-86942421 None:intergenic 35.0%
GTTGGTATAAGTACCCATTT+CGG - chr8_1:86942403-86942422 None:intergenic 35.0%
TGTAGATGATTTAGGCCATT+TGG + chr8_1:86942546-86942565 Msa1222640:three_prime_UTR 35.0%
CTCAAAACAGTATCAAATCC+AGG - chr8_1:86942608-86942627 None:intergenic 35.0%
! AAGAGCTTGCTTTAACAGAA+GGG - chr8_1:86942732-86942751 None:intergenic 35.0%
! GTTGACATTTTACCACTGTT+AGG + chr8_1:86942768-86942787 Msa1222640:three_prime_UTR 35.0%
TTCAAAAGTTGACAGAGTGA+AGG - chr8_1:86942918-86942937 None:intergenic 35.0%
TTTGTGAATGTGAGGGGTTT+CGG - chr8_1:86938839-86938858 None:intergenic 40.0%
TGAGGGATTTGTGAATGTGA+GGG - chr8_1:86938846-86938865 None:intergenic 40.0%
TTGAGGGATTTGTGAATGTG+AGG - chr8_1:86938847-86938866 None:intergenic 40.0%
TAGTGTGCGGTAGAATTTGA+GGG - chr8_1:86938863-86938882 None:intergenic 40.0%
ATAGTGTGCGGTAGAATTTG+AGG - chr8_1:86938864-86938883 None:intergenic 40.0%
TGGAAATGGAAGATAGTGTG+CGG - chr8_1:86938876-86938895 None:intergenic 40.0%
GAAGTAAAGATGCTGCAACA+CGG - chr8_1:86938906-86938925 None:intergenic 40.0%
!! ACTAACGTTGGTTCTTGAGT+AGG - chr8_1:86938928-86938947 None:intergenic 40.0%
TCTTCTTCCACTTCAGGTAA+TGG + chr8_1:86938955-86938974 Msa1222640:CDS 40.0%
! TCCACTTCAGGTAATGGTAA+CGG + chr8_1:86938961-86938980 Msa1222640:CDS 40.0%
!!! TAACGGTGTTGATTTTCCCA+AGG + chr8_1:86938978-86938997 Msa1222640:CDS 40.0%
!!! AACGGTGTTGATTTTCCCAA+GGG + chr8_1:86938979-86938998 Msa1222640:CDS 40.0%
ACGAAATCAAACTCACCCTT+GGG - chr8_1:86938997-86939016 None:intergenic 40.0%
ATTTCTTGAAGCCAGAATGC+GGG - chr8_1:86939020-86939039 None:intergenic 40.0%
AATATTTCCGATGGACCAGT+TGG + chr8_1:86939117-86939136 Msa1222640:CDS 40.0%
GATCAAATGCGGCTTTCATA+AGG - chr8_1:86939185-86939204 None:intergenic 40.0%
!!! GGAGTTTTGAGCCTGTATTA+TGG + chr8_1:86939337-86939356 Msa1222640:CDS 40.0%
CTTGTATCTGGAGAATCATC+CGG - chr8_1:86939429-86939448 None:intergenic 40.0%
GGGCTATCAATACTTGTATC+TGG - chr8_1:86939441-86939460 None:intergenic 40.0%
! TATTGATAGCCCTGTGAACA+CGG + chr8_1:86939449-86939468 Msa1222640:CDS 40.0%
GGACATTTAACCACAGATGA+AGG + chr8_1:86939531-86939550 Msa1222640:CDS 40.0%
!! TATGCTTTGAAATCGAGCAG+TGG - chr8_1:86939765-86939784 None:intergenic 40.0%
TGCACTGTTGGTATGTCAAA+TGG + chr8_1:86939801-86939820 Msa1222640:CDS 40.0%
TGTTGGTATGTCAAATGGCA+GGG + chr8_1:86939806-86939825 Msa1222640:CDS 40.0%
TCAAATGGCAGGGAAAAGAT+CGG + chr8_1:86939816-86939835 Msa1222640:CDS 40.0%
! TCCAGGAGGAGAATTTTTGT+TGG + chr8_1:86939953-86939972 Msa1222640:CDS 40.0%
TTATCAGACAAGGCAACTAG+TGG + chr8_1:86940035-86940054 Msa1222640:CDS 40.0%
GGTGCATATTTGATTGCAAC+TGG + chr8_1:86940056-86940075 Msa1222640:CDS 40.0%
TATTTGATTGCAACTGGAGC+AGG + chr8_1:86940062-86940081 Msa1222640:CDS 40.0%
TCATCTTCATGTGGCATGAT+TGG - chr8_1:86940242-86940261 None:intergenic 40.0%
GAAGATGAGCGGATCATAAA+TGG + chr8_1:86940254-86940273 Msa1222640:CDS 40.0%
TTACAAAGTCTTTGTGGGCA+AGG + chr8_1:86940289-86940308 Msa1222640:CDS 40.0%
CACATCTACACTTAACGATC+TGG - chr8_1:86940324-86940343 None:intergenic 40.0%
CAGATCGTTAAGTGTAGATG+TGG + chr8_1:86940322-86940341 Msa1222640:CDS 40.0%
TGGTTTCTTGCTGAAAAGTG+TGG + chr8_1:86940728-86940747 Msa1222640:intron 40.0%
AAGTGCTTAGTTGTTGGCAA+AGG - chr8_1:86940925-86940944 None:intergenic 40.0%
TGTTAATGTCCTGTCCTTGA+AGG - chr8_1:86941032-86941051 None:intergenic 40.0%
ATGCAAACAAGAGCTTGGAA+AGG - chr8_1:86941214-86941233 None:intergenic 40.0%
! GCATTTATTTGGCTCACACT+TGG + chr8_1:86941230-86941249 Msa1222640:intron 40.0%
GATGCTCTCATATTCCATGT+AGG + chr8_1:86941662-86941681 Msa1222640:intron 40.0%
GGTGATATTGTCAACCTACA+TGG - chr8_1:86941679-86941698 None:intergenic 40.0%
GTCAACCTTCATGGATAGTT+AGG - chr8_1:86941728-86941747 None:intergenic 40.0%
TGGATGTTGTATGCCTTCAA+AGG + chr8_1:86942335-86942354 Msa1222640:CDS 40.0%
GTACTTATACCAACCCTGAT+TGG + chr8_1:86942409-86942428 Msa1222640:CDS 40.0%
TCAACATCAGTGTACTCCAT+TGG + chr8_1:86942447-86942466 Msa1222640:CDS 40.0%
GATGTGCATTCAGGAATAAC+AGG + chr8_1:86942472-86942491 Msa1222640:CDS 40.0%
TGCATTCAGGAATAACAGGA+GGG + chr8_1:86942476-86942495 Msa1222640:CDS 40.0%
! TAGTGTGGGTTTTTATGTCC+TGG + chr8_1:86942587-86942606 Msa1222640:three_prime_UTR 40.0%
! GCTTGACTCTGCTGTTTAAA+TGG + chr8_1:86942632-86942651 Msa1222640:three_prime_UTR 40.0%
! ATGACTTAGTTTGGCCAAAC+TGG + chr8_1:86942703-86942722 Msa1222640:three_prime_UTR 40.0%
! CAAGAGCTTGCTTTAACAGA+AGG - chr8_1:86942733-86942752 None:intergenic 40.0%
CTTCTGTTAAAGCAAGCTCT+TGG + chr8_1:86942731-86942750 Msa1222640:three_prime_UTR 40.0%
! GTGCTAAGAGCTTGCTTTAA+GGG - chr8_1:86942797-86942816 None:intergenic 40.0%
! TGTGCTAAGAGCTTGCTTTA+AGG - chr8_1:86942798-86942817 None:intergenic 40.0%
!! CTGGTATGATTTGTTTGTCC+TGG + chr8_1:86942998-86943017 Msa1222640:three_prime_UTR 40.0%
TTTCGGGAAGATGAAGAGGA+TGG - chr8_1:86938822-86938841 None:intergenic 45.0%
TTGTGAATGTGAGGGGTTTC+GGG - chr8_1:86938838-86938857 None:intergenic 45.0%
GAGGGATTTGTGAATGTGAG+GGG - chr8_1:86938845-86938864 None:intergenic 45.0%
AACACGGTCCACAATGGAAA+TGG - chr8_1:86938890-86938909 None:intergenic 45.0%
ACCGTTACCATTACCTGAAG+TGG - chr8_1:86938965-86938984 None:intergenic 45.0%
GACGAAATCAAACTCACCCT+TGG - chr8_1:86938998-86939017 None:intergenic 45.0%
! TTTGATTTCGTCCCGCATTC+TGG + chr8_1:86939006-86939025 Msa1222640:CDS 45.0%
! GGTTAAGACTCTGTTAGCCT+CGG + chr8_1:86939050-86939069 Msa1222640:CDS 45.0%
TATCTGGAGAATCATCCGGA+GGG - chr8_1:86939425-86939444 None:intergenic 45.0%
TGAAGTGCAGTATAGGACAG+CGG + chr8_1:86939494-86939513 Msa1222640:CDS 45.0%
ACAGCGGGGAAATACAAATC+TGG + chr8_1:86939510-86939529 Msa1222640:CDS 45.0%
TGAAGGATGGGAATCGATGA+AGG + chr8_1:86939548-86939567 Msa1222640:CDS 45.0%
GGAATCGATGAAGGCAGTTA+AGG + chr8_1:86939557-86939576 Msa1222640:CDS 45.0%
AGATTATCACGGGTCTCAGT+AGG + chr8_1:86939730-86939749 Msa1222640:CDS 45.0%
CTGTTGGTATGTCAAATGGC+AGG + chr8_1:86939805-86939824 Msa1222640:CDS 45.0%
GTTTGAAGGCTGTAATCCTC+CGG + chr8_1:86939922-86939941 Msa1222640:CDS 45.0%
GCCAACAAAAATTCTCCTCC+TGG - chr8_1:86939957-86939976 None:intergenic 45.0%
AAGAAGGAGGTTCTTCACAG+AGG + chr8_1:86940179-86940198 Msa1222640:CDS 45.0%
TCATGCCACATGAAGATGAG+CGG + chr8_1:86940243-86940262 Msa1222640:CDS 45.0%
ATGATCCGCTCATCTTCATG+TGG - chr8_1:86940251-86940270 None:intergenic 45.0%
CAGCACGTAGCTGATATATC+TGG + chr8_1:86941296-86941315 Msa1222640:intron 45.0%
GTTAATCAGTCAGTGCACTC+AGG - chr8_1:86941451-86941470 None:intergenic 45.0%
!! GATGTATTTCTGTCGGCTTC+CGG + chr8_1:86942253-86942272 Msa1222640:intron 45.0%
AAACTGGACAAAGCCCGAAA+TGG + chr8_1:86942386-86942405 Msa1222640:CDS 45.0%
AACTGGACAAAGCCCGAAAT+GGG + chr8_1:86942387-86942406 Msa1222640:CDS 45.0%
TACCAACCCTGATTGGAAGA+AGG + chr8_1:86942416-86942435 Msa1222640:CDS 45.0%
ACAGCTCCTTCTTCCAATCA+GGG - chr8_1:86942425-86942444 None:intergenic 45.0%
AACAGCTCCTTCTTCCAATC+AGG - chr8_1:86942426-86942445 None:intergenic 45.0%
CCTGAATGCACATCAACCAA+TGG - chr8_1:86942466-86942485 None:intergenic 45.0%
! CCATTGGTTGATGTGCATTC+AGG + chr8_1:86942463-86942482 Msa1222640:CDS 45.0%
GTGCATTCAGGAATAACAGG+AGG + chr8_1:86942475-86942494 Msa1222640:CDS 45.0%
TTCAGGAATAACAGGAGGGA+TGG + chr8_1:86942480-86942499 Msa1222640:CDS 45.0%
TAACAGAAGGGAAGCCAGTT+TGG - chr8_1:86942720-86942739 None:intergenic 45.0%
! CTTTAAGGGAAGCCTAACAG+TGG - chr8_1:86942783-86942802 None:intergenic 45.0%
!! ACCAGTTGGCACTGACTCTA+AGG + chr8_1:86939131-86939150 Msa1222640:CDS 50.0%
ACCTTAGAGTCAGTGCCAAC+TGG - chr8_1:86939135-86939154 None:intergenic 50.0%
GGACACACGAGGATCAAATG+CGG - chr8_1:86939196-86939215 None:intergenic 50.0%
ATCTGGAGAATCATCCGGAG+GGG - chr8_1:86939424-86939443 None:intergenic 50.0%
GTATCTGGAGAATCATCCGG+AGG - chr8_1:86939426-86939445 None:intergenic 50.0%
GAAGTGCAGTATAGGACAGC+GGG + chr8_1:86939495-86939514 Msa1222640:CDS 50.0%
AAGTGCAGTATAGGACAGCG+GGG + chr8_1:86939496-86939515 Msa1222640:CDS 50.0%
CGATTCCCATCCTTCATCTG+TGG - chr8_1:86939544-86939563 None:intergenic 50.0%
ACGGGTCTCAGTAGGAGATT+TGG + chr8_1:86939738-86939757 Msa1222640:CDS 50.0%
ATTGAGATTATCCGTGGGGC+TGG + chr8_1:86939888-86939907 Msa1222640:CDS 50.0%
TTGAGATTATCCGTGGGGCT+GGG + chr8_1:86939889-86939908 Msa1222640:CDS 50.0%
!! TTTTTGATGACCCAGCCCCA+CGG - chr8_1:86939902-86939921 None:intergenic 50.0%
AAGGAGGTTCTTCACAGAGG+TGG + chr8_1:86940182-86940201 Msa1222640:CDS 50.0%
TGGTTGACGAGATTGCCCAA+GGG + chr8_1:86940342-86940361 Msa1222640:CDS 50.0%
GGCGGCACTAAACCATATGT+TGG + chr8_1:86940382-86940401 Msa1222640:CDS 50.0%
CAAGCGCGTCAACCAACATA+TGG - chr8_1:86940397-86940416 None:intergenic 50.0%
! CATATGTTGGTTGACGCGCT+TGG + chr8_1:86940395-86940414 Msa1222640:CDS 50.0%
GGCACTAGCATCCAGAAAAG+GGG - chr8_1:86940864-86940883 None:intergenic 50.0%
CGGCACTAGCATCCAGAAAA+GGG - chr8_1:86940865-86940884 None:intergenic 50.0%
ACTTCAGTCCCCTGTGCTTA+AGG + chr8_1:86941860-86941879 Msa1222640:intron 50.0%
AACCTCTGCCTTAAGCACAG+GGG - chr8_1:86941871-86941890 None:intergenic 50.0%
GAACCTCTGCCTTAAGCACA+GGG - chr8_1:86941872-86941891 None:intergenic 50.0%
AGAACCTCTGCCTTAAGCAC+AGG - chr8_1:86941873-86941892 None:intergenic 50.0%
ACTTCAGTCCCCTGTGCTTA+AGG + chr8_1:86941860-86941879 Msa1222640:intron 50.0%
AACCTCTGCCTTAAGCACAG+GGG - chr8_1:86941871-86941890 None:intergenic 50.0%
GAACCTCTGCCTTAAGCACA+GGG - chr8_1:86941872-86941891 None:intergenic 50.0%
AGAACCTCTGCCTTAAGCAC+AGG - chr8_1:86941873-86941892 None:intergenic 50.0%
CTCCTTCTTCCAATCAGGGT+TGG - chr8_1:86942421-86942440 None:intergenic 50.0%
ACAGGTTCACAGATAGCTCC+AGG - chr8_1:86943019-86943038 None:intergenic 50.0%
GGGGTTTCGGGAAGATGAAG+AGG - chr8_1:86938826-86938845 None:intergenic 55.0%
TGCTGCAACACGGTCCACAA+TGG - chr8_1:86938896-86938915 None:intergenic 55.0%
! TCTGTTAGCCTCGGAGCATG+TGG + chr8_1:86939059-86939078 Msa1222640:CDS 55.0%
TCCATGTTCCACATGCTCCG+AGG - chr8_1:86939070-86939089 None:intergenic 55.0%
GTCAGTGCCAACTGGTCCAT+CGG - chr8_1:86939127-86939146 None:intergenic 55.0%
AGAAACACAGCGGACACACG+AGG - chr8_1:86939207-86939226 None:intergenic 55.0%
! GAATCATCCGGAGGGGGTTT+TGG - chr8_1:86939417-86939436 None:intergenic 55.0%
TCTGGAGAATCATCCGGAGG+GGG - chr8_1:86939423-86939442 None:intergenic 55.0%
ATCCTCCGGATTGACAGTCC+AGG + chr8_1:86939936-86939955 Msa1222640:CDS 55.0%
CTCCTCCTGGACTGTCAATC+CGG - chr8_1:86939944-86939963 None:intergenic 55.0%
CTTTGTGGGCAAGGTAGCGA+TGG + chr8_1:86940298-86940317 Msa1222640:CDS 55.0%
GTGGTTGACGAGATTGCCCA+AGG + chr8_1:86940341-86940360 Msa1222640:CDS 55.0%
TTGACGAGATTGCCCAAGGG+CGG + chr8_1:86940345-86940364 Msa1222640:CDS 55.0%
ATGGTTTAGTGCCGCCTTCC+CGG - chr8_1:86940378-86940397 None:intergenic 55.0%
! ATGTTGGTTGACGCGCTTGG+TGG + chr8_1:86940398-86940417 Msa1222640:CDS 55.0%
GCGGCACTAGCATCCAGAAA+AGG - chr8_1:86940866-86940885 None:intergenic 55.0%
TTTCTGGATGCTAGTGCCGC+TGG + chr8_1:86940866-86940885 Msa1222640:intron 55.0%
!! TTCTGTCGGCTTCCGGTTTC+TGG + chr8_1:86942260-86942279 Msa1222640:intron 55.0%
GCCTCGGAGCATGTGGAACA+TGG + chr8_1:86939066-86939085 Msa1222640:CDS 60.0%
TGCACCTCCAAAACCCCCTC+CGG + chr8_1:86939407-86939426 Msa1222640:CDS 60.0%
!! TCATCCGGAGGGGGTTTTGG+AGG - chr8_1:86939414-86939433 None:intergenic 60.0%
CTCCTGGACTGTCAATCCGG+AGG - chr8_1:86939941-86939960 None:intergenic 60.0%
CTCCGGATTGACAGTCCAGG+AGG + chr8_1:86939939-86939958 Msa1222640:CDS 60.0%
AGATTGCCCAAGGGCGGCTT+TGG + chr8_1:86940351-86940370 Msa1222640:CDS 60.0%
GTCCCCTGTGCTTAAGGCAG+AGG + chr8_1:86941866-86941885 Msa1222640:intron 60.0%
GTCCCCTGTGCTTAAGGCAG+AGG + chr8_1:86941866-86941885 Msa1222640:intron 60.0%
!! GCCCAAGGGCGGCTTTGGAC+CGG + chr8_1:86940356-86940375 Msa1222640:CDS 70.0%
CCCGGTCCAAAGCCGCCCTT+GGG - chr8_1:86940360-86940379 None:intergenic 70.0%
!! CCCAAGGGCGGCTTTGGACC+GGG + chr8_1:86940357-86940376 Msa1222640:CDS 70.0%
TCCCGGTCCAAAGCCGCCCT+TGG - chr8_1:86940361-86940380 None:intergenic 70.0%
!! AGGGCGGCTTTGGACCGGGA+AGG + chr8_1:86940361-86940380 Msa1222640:CDS 70.0%
!! GCGGCTTTGGACCGGGAAGG+CGG + chr8_1:86940364-86940383 Msa1222640:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 86938754 86943060 86938754 ID=Msa1222640;Name=Msa1222640
chr8_1 mRNA 86938754 86943060 86938754 ID=Msa1222640-mRNA-1;Parent=Msa1222640;Name=Msa1222640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.5|1|1|1|2|538|645
chr8_1 exon 86938754 86940501 86938754 ID=Msa1222640-mRNA-1:exon:31314;Parent=Msa1222640-mRNA-1
chr8_1 exon 86942333 86943060 86942333 ID=Msa1222640-mRNA-1:exon:31315;Parent=Msa1222640-mRNA-1
chr8_1 CDS 86938754 86940501 86938754 ID=Msa1222640-mRNA-1:cds;Parent=Msa1222640-mRNA-1
chr8_1 CDS 86942333 86942522 86942333 ID=Msa1222640-mRNA-1:cds;Parent=Msa1222640-mRNA-1
chr8_1 three_prime_UTR 86942523 86943060 86942523 ID=Msa1222640-mRNA-1:three_prime_utr;Parent=Msa1222640-mRNA-1
Gene Sequence

>Msa1222640

ATGCTTCGTTACATGTACAGAAAAGCATCACAATCATCCTTCATCTTCATCTCAAACAACTTACGCCATCCTCTTCATCTTCCCGAAACCCCTCACATTCACAAATCCCTCAAATTCTACCGCACACTATCTTCCATTTCCATTGTGGACCGTGTTGCAGCATCTTTACTTCCTACTCAAGAACCAACGTTAGTGTTTTCATCTTCTTCCACTTCAGGTAATGGTAACGGTGTTGATTTTCCCAAGGGTGAGTTTGATTTCGTCCCGCATTCTGGCTTCAAGAAATTTATTGTGAAGGTTAAGACTCTGTTAGCCTCGGAGCATGTGGAACATGGAAGTATATTGAGAATCAATTTACAAGGAAATATTTCCGATGGACCAGTTGGCACTGACTCTAAGGTATTGTCTTTACCTCAGCTAAGTGAAAACCTTATGAAAGCCGCATTTGATCCTCGTGTGTCCGCTGTGTTTCTTAACATAGTTGATTTTTATTGTGGTTGGGCTAAATGTGATGAAATTAGAAGACAGATATCAAATTTTAAAAAATCTGGTAAAAAGGTTATAGCTTTTATGGCTTCATTTTGGAGTTTTGAGCCTGTATTATGGTGTGAAGATAGATCATATTACATAGCTAGTGTATGTGATGAAATATATGCACCTCCAAAACCCCCTCCGGATGATTCTCCAGATACAAGTATTGATAGCCCTGTGAACACGGATTGTATTTATTACAATCTTGTTGAAGTGCAGTATAGGACAGCGGGGAAATACAAATCTGGACATTTAACCACAGATGAAGGATGGGAATCGATGAAGGCAGTTAAGGATGATATAAGATGTAACTGGCTTGTTATGGTTTCTTCTTCAAGGAAAATAAGAGAAGAGGAGATTCTAACTTTTTTTGGTAGTGAGGATTGTCGTGAAGTAGAAAATTGGATAGATTGTAAGTTACTTTCAGGGTTGATGGCTAGTGATAAGATTATCACGGGTCTCAGTAGGAGATTTGGACCACTGCTCGATTTCAAAGCATATTCACAAGTTAAAAAATGCACTGTTGGTATGTCAAATGGCAGGGAAAAGATCGGTGTTATTAGAGTTTGTGGATCCCACAATGAAAGTGCAATTCATGATTTGATTGAGATTATCCGTGGGGCTGGGTCATCAAAAAGTTTGAAGGCTGTAATCCTCCGGATTGACAGTCCAGGAGGAGAATTTTTGTTGGCTGATCAATTATGGAGAGAAGTCAACATTCTTGCTTCAAAGATACCAGTCGTTTCTTCATTATCAGACAAGGCAACTAGTGGTGCATATTTGATTGCAACTGGAGCAGGAACAATTGTTGCTGAGAAACTCACTTATACATGTCAAATTGGAGCGATAAACTCATTTCCAAACACTGAGAAGTTATACAAATACATTGGTTTTAAGAAGGAGGTTCTTCACAGAGGTGGTAAATATGCAGAATTATTTGAGGCTGATCATCGGCCAATCATGCCACATGAAGATGAGCGGATCATAAATGGGTTAGAAGAAGTTTACAAAGTCTTTGTGGGCAAGGTAGCGATGGCCAGATCGTTAAGTGTAGATGTGGTTGACGAGATTGCCCAAGGGCGGCTTTGGACCGGGAAGGCGGCACTAAACCATATGTTGGTTGACGCGCTTGGTGGTTTTTCACGCGCTGTTGCTATAGCCAAATTGAAGGCTAATATACCTCAAAATAGACCTATTAATCTGGTTGAACTCTCTGCTCTGGATGTTGTATGCCTTCAAAGGACTGTTGTTTTACTTATCAGAACACAACAAACTGGACAAAGCCCGAAATGGGTACTTATACCAACCCTGATTGGAAGAAGGAGCTGTTGTCAACATCAGTGTACTCCATTGGTTGATGTGCATTCAGGAATAACAGGAGGGATGGTCTCTTCAATTCAACAGTGA
Protein sequence

>Msa1222640

MLRYMYRKASQSSFIFISNNLRHPLHLPETPHIHKSLKFYRTLSSISIVDRVAASLLPTQEPTLVFSSSSTSGNGNGVDFPKGEFDFVPHSGFKKFIVKVKTLLASEHVEHGSILRINLQGNISDGPVGTDSKVLSLPQLSENLMKAAFDPRVSAVFLNIVDFYCGWAKCDEIRRQISNFKKSGKKVIAFMASFWSFEPVLWCEDRSYYIASVCDEIYAPPKPPPDDSPDTSIDSPVNTDCIYYNLVEVQYRTAGKYKSGHLTTDEGWESMKAVKDDIRCNWLVMVSSSRKIREEEILTFFGSEDCREVENWIDCKLLSGLMASDKIITGLSRRFGPLLDFKAYSQVKKCTVGMSNGREKIGVIRVCGSHNESAIHDLIEIIRGAGSSKSLKAVILRIDSPGGEFLLADQLWREVNILASKIPVVSSLSDKATSGAYLIATGAGTIVAEKLTYTCQIGAINSFPNTEKLYKYIGFKKEVLHRGGKYAELFEADHRPIMPHEDERIINGLEEVYKVFVGKVAMARSLSVDVVDEIAQGRLWTGKAALNHMLVDALGGFSRAVAIAKLKANIPQNRPINLVELSALDVVCLQRTVVLLIRTQQTGQSPKWVLIPTLIGRRSCCQHQCTPLVDVHSGITGGMVSSIQQ*