Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406460 | GAU18989.1 | 49.807 | 518 | 203 | 10 | 73 | 535 | 58 | 573 | 3.11e-157 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406460 | sp|Q9C9C0|SPPA1_ARATH | 39.965 | 568 | 280 | 13 | 22 | 531 | 32 | 596 | 6.16e-126 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406460 | A0A2Z6LLX4 | 49.807 | 518 | 203 | 10 | 73 | 535 | 58 | 573 | 1.48e-157 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1406450 | Msa1406460 | 0.899142 | 2.654729e-77 | -8.615850e-47 |
| Msa1406460 | Msa1416540 | 0.922124 | 1.477729e-88 | -8.615850e-47 |
| Msa1406460 | Msa1416590 | 0.904370 | 1.317938e-79 | -8.615850e-47 |
| Msa1406460 | Msa1416600 | 0.989244 | 2.699124e-177 | -8.615850e-47 |
| Msa1334140 | Msa1406460 | 0.898670 | 4.227315e-77 | -8.615850e-47 |
| Msa1334180 | Msa1406460 | 0.905093 | 6.177558e-80 | -8.615850e-47 |
| Msa1334250 | Msa1406460 | 0.837281 | 5.701479e-57 | -8.615850e-47 |
| Msa1334260 | Msa1406460 | 0.800488 | 1.407985e-48 | -8.615850e-47 |
| Msa1222490 | Msa1406460 | 0.922906 | 5.337220e-89 | -8.615850e-47 |
| Msa1222610 | Msa1406460 | 0.835417 | 1.698706e-56 | -8.615850e-47 |
| Msa1222620 | Msa1406460 | 0.848438 | 6.129257e-60 | -8.615850e-47 |
| Msa1222640 | Msa1406460 | 0.908440 | 1.705415e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406460 | MtrunA17_Chr4g0061881 | 49.807 | 518 | 203 | 9 | 74 | 535 | 66 | 582 | 2.13e-160 | 474 |
| Msa1406460 | MtrunA17_Chr2g0307851 | 45.508 | 512 | 223 | 9 | 79 | 535 | 84 | 594 | 3.21e-143 | 430 |
| Msa1406460 | MtrunA17_Chr4g0073611 | 48.529 | 272 | 134 | 3 | 149 | 416 | 2 | 271 | 7.67e-84 | 264 |
| Msa1406460 | MtrunA17_Chr5g0437391 | 39.053 | 338 | 140 | 9 | 197 | 513 | 8 | 300 | 2.23e-63 | 212 |
| Msa1406460 | MtrunA17_Chr5g0408331 | 39.118 | 340 | 137 | 10 | 76 | 404 | 32 | 312 | 6.88e-63 | 210 |
| Msa1406460 | MtrunA17_Chr4g0069071 | 36.207 | 348 | 185 | 8 | 130 | 445 | 5 | 347 | 1.12e-51 | 182 |
| Msa1406460 | MtrunA17_Chr4g0061841 | 35.000 | 300 | 89 | 6 | 148 | 417 | 8 | 231 | 1.87e-43 | 155 |
| Msa1406460 | MtrunA17_Chr8g0344851 | 47.134 | 157 | 74 | 3 | 386 | 533 | 1 | 157 | 1.43e-38 | 140 |
| Msa1406460 | MtrunA17_Chr4g0064001 | 52.756 | 127 | 60 | 0 | 409 | 535 | 2 | 128 | 3.80e-36 | 135 |
| Msa1406460 | MtrunA17_Chr4g0076561 | 42.929 | 198 | 99 | 5 | 303 | 499 | 2 | 186 | 6.23e-36 | 133 |
| Msa1406460 | MtrunA17_Chr4g0076571 | 61.728 | 81 | 31 | 0 | 144 | 224 | 1 | 81 | 1.71e-26 | 103 |
| Msa1406460 | MtrunA17_Chr4g0061831 | 67.143 | 70 | 23 | 0 | 469 | 538 | 44 | 113 | 3.13e-25 | 100 |
| Msa1406460 | MtrunA17_Chr5g0437441 | 51.961 | 102 | 43 | 3 | 104 | 202 | 4 | 102 | 1.93e-24 | 98.2 |
| Msa1406460 | MtrunA17_Chr8g0344821 | 66.667 | 63 | 21 | 0 | 473 | 535 | 38 | 100 | 2.09e-21 | 89.7 |
| Msa1406460 | MtrunA17_Chr8g0344831 | 44.828 | 116 | 62 | 2 | 296 | 410 | 7 | 121 | 1.45e-20 | 87.8 |
| Msa1406460 | MtrunA17_Chr4g0073621 | 73.077 | 52 | 12 | 1 | 486 | 535 | 1 | 52 | 1.17e-16 | 75.1 |
| Msa1406460 | MtrunA17_Chr5g0437451 | 56.923 | 65 | 25 | 1 | 474 | 535 | 81 | 145 | 4.80e-16 | 75.9 |
| Msa1406460 | MtrunA17_Chr4g0069081 | 51.613 | 62 | 30 | 0 | 473 | 534 | 8 | 69 | 6.89e-15 | 71.2 |
| Msa1406460 | MtrunA17_Chr5g0408341 | 64.444 | 45 | 16 | 0 | 491 | 535 | 1 | 45 | 2.64e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1406460 | AT1G73990.1 | 39.965 | 568 | 280 | 13 | 22 | 531 | 32 | 596 | 6.26e-127 | 389 |
| Msa1406460 | AT1G73990.2 | 37.879 | 528 | 261 | 14 | 22 | 488 | 32 | 553 | 1.98e-103 | 325 |
Find 133 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGATTCCTTGGTTTAAA+AGG | 0.176058 | tig0023210:-17283 | None:intergenic |
| TTTGATTTCGTCCCGCATTC+TGG | 0.209844 | tig0023210:+16726 | Msa1406460:CDS |
| TTGTGAATGTGAGGGGTTTC+GGG | 0.245290 | tig0023210:-16555 | None:intergenic |
| AATTCAAGGCACTTATTATA+CGG | 0.250692 | tig0023210:+17567 | Msa1406460:CDS |
| TTTGTGAATGTGAGGGGTTT+CGG | 0.257624 | tig0023210:-16556 | None:intergenic |
| TTGGTATAAGTACCCATTTC+CGG | 0.263741 | tig0023210:-19015 | None:intergenic |
| AATCTCTAAAATTGACAAAA+TGG | 0.271316 | tig0023210:-17403 | None:intergenic |
| GTCAATGACAATAAAGAATA+TGG | 0.271451 | tig0023210:+17925 | Msa1406460:CDS |
| ATTGCTATCATTCGCGTGTC+TGG | 0.277060 | tig0023210:+17479 | Msa1406460:CDS |
| AGTGCTTCTGTTTGTTTGTT+TGG | 0.278755 | tig0023210:+17110 | Msa1406460:CDS |
| CCATTGGTTGATGTGCATTC+AGG | 0.286389 | tig0023210:+19079 | Msa1406460:exon |
| ATTGTACTTGTTTGAATTGA+TGG | 0.297339 | tig0023210:-17504 | None:intergenic |
| TGGATGATTTAGGAGAAATT+TGG | 0.298537 | tig0023210:+18272 | Msa1406460:intron |
| CATGGGTTAGTTGATGCTAT+TGG | 0.311818 | tig0023210:+17995 | Msa1406460:CDS |
| AACAGCTCCTTCTTCCAATC+AGG | 0.317463 | tig0023210:-19039 | None:intergenic |
| CGTAGTGCTTACAAACATTA+GGG | 0.322089 | tig0023210:-17157 | None:intergenic |
| CAATTGCACAAGGGAAAGTT+TGG | 0.326756 | tig0023210:+17951 | Msa1406460:CDS |
| TTTAGAGATTATTCTTTAGT+TGG | 0.348620 | tig0023210:+17416 | Msa1406460:CDS |
| AACTGGACAAAGCCCGGAAA+TGG | 0.348893 | tig0023210:+19002 | Msa1406460:CDS |
| GGGTCAATTGGTGTGGCATC+AGG | 0.355686 | tig0023210:+17761 | Msa1406460:CDS |
| TGAGGCAGTGACTGCACTCC+TGG | 0.364724 | tig0023210:+17190 | Msa1406460:CDS |
| ACCAGTTGGCACTGACTCTA+AGG | 0.365682 | tig0023210:+16851 | Msa1406460:CDS |
| ATGAGAAGCTGCGTCCTTAC+CGG | 0.370022 | tig0023210:-17975 | None:intergenic |
| CCTGACTGACATATTGTATC+AGG | 0.371000 | tig0023210:+17334 | Msa1406460:CDS |
| TATTATACGGATTGATTGTC+CGG | 0.372786 | tig0023210:+17580 | Msa1406460:CDS |
| TCGTAGTGCTTACAAACATT+AGG | 0.380712 | tig0023210:-17158 | None:intergenic |
| TGGTATAAGTACCCATTTCC+GGG | 0.381711 | tig0023210:-19014 | None:intergenic |
| TCTTCTTCCACTTCAGGTAA+TGG | 0.382352 | tig0023210:+16675 | Msa1406460:CDS |
| TCTTTGTCTGATGTTGCAAC+TGG | 0.395783 | tig0023210:+17677 | Msa1406460:CDS |
| CTGACTGTCTTGAGGTATCT+TGG | 0.396709 | tig0023210:-18056 | None:intergenic |
| TTCGCCAGTGACACAAGCTT+TGG | 0.398734 | tig0023210:-17824 | None:intergenic |
| CGTTCCAAAGCTTGTGTCAC+TGG | 0.410749 | tig0023210:+17820 | Msa1406460:CDS |
| CTTATCAGAACACAACAAAC+TGG | 0.418408 | tig0023210:+18985 | Msa1406460:CDS |
| AATTTGGCAACAATAATTCA+TGG | 0.421068 | tig0023210:+18288 | Msa1406460:CDS |
| GATGTGCATTCAGGAATAAC+AGG | 0.437794 | tig0023210:+19088 | Msa1406460:exon |
| TCCTTTGATATAAATTATCA+AGG | 0.441370 | tig0023210:-17793 | None:intergenic |
| GGAGGATACTACATAGCAAT+TGG | 0.443601 | tig0023210:+17701 | Msa1406460:CDS |
| GTAAAACAACAGTCCTTTGA+AGG | 0.445649 | tig0023210:-18963 | None:intergenic |
| TTGTCTGATGTTGCAACTGG+TGG | 0.446639 | tig0023210:+17680 | Msa1406460:CDS |
| GATCAAATGCGGCTTTCATA+AGG | 0.449687 | tig0023210:-16902 | None:intergenic |
| TGGATCATGTCTATTCCAAC+TGG | 0.452166 | tig0023210:+17210 | Msa1406460:CDS |
| TCAGACAAAGAAGCAACTAC+TGG | 0.468182 | tig0023210:-17665 | None:intergenic |
| TGTGTACTAGATAGATTCCT+TGG | 0.469219 | tig0023210:-17292 | None:intergenic |
| AACACGGTCCACAATGGAAA+TGG | 0.473603 | tig0023210:-16607 | None:intergenic |
| CTTCCAAGCAGGTGAAGACC+TGG | 0.477422 | tig0023210:-17358 | None:intergenic |
| TAGTGTGCGGTAGAATTTGA+GGG | 0.478545 | tig0023210:-16580 | None:intergenic |
| GACGAAATCAAACTCACCCT+TGG | 0.479725 | tig0023210:-16715 | None:intergenic |
| ACCTTAGAGTCAGTGCCAAC+TGG | 0.479839 | tig0023210:-16852 | None:intergenic |
| TTGCTATCATTCGCGTGTCT+GGG | 0.480681 | tig0023210:+17480 | Msa1406460:CDS |
| ACCGTTACCATTACCTGAAG+TGG | 0.483377 | tig0023210:-16682 | None:intergenic |
| ACCTTGATAATTTATATCAA+AGG | 0.487316 | tig0023210:+17792 | Msa1406460:CDS |
| CCTGATACAATATGTCAGTC+AGG | 0.487980 | tig0023210:-17334 | None:intergenic |
| ACAACAAACTGGACAAAGCC+CGG | 0.491518 | tig0023210:+18996 | Msa1406460:CDS |
| CTTCAAGAAATTTATTGTGA+AGG | 0.493765 | tig0023210:+16749 | Msa1406460:CDS |
| ACTGGACAAAGCCCGGAAAT+GGG | 0.496394 | tig0023210:+19003 | Msa1406460:CDS |
| TATAGCTATTGCAAAACTGC+AGG | 0.501094 | tig0023210:+18033 | Msa1406460:CDS |
| GGTAAGGACGCAGCTTCTCA+TGG | 0.501365 | tig0023210:+17977 | Msa1406460:CDS |
| TCTAAAATTGACAAAATGGA+TGG | 0.504099 | tig0023210:-17399 | None:intergenic |
| GTACTTATACCAACCCTGAT+TGG | 0.505029 | tig0023210:+19025 | Msa1406460:CDS |
| TCTAGTACACAAACTTAAAG+AGG | 0.505294 | tig0023210:+17304 | Msa1406460:CDS |
| TTAGTTGGAAAATCAACTGT+AGG | 0.505437 | tig0023210:+17431 | Msa1406460:CDS |
| CAAGATACCTCAAGACAGTC+AGG | 0.506343 | tig0023210:+18057 | Msa1406460:CDS |
| GGACCAGGTCTTCACCTGCT+TGG | 0.507013 | tig0023210:+17355 | Msa1406460:CDS |
| ATAGTGTGCGGTAGAATTTG+AGG | 0.507587 | tig0023210:-16581 | None:intergenic |
| GATCAAATTTGTTGTTCTAG+AGG | 0.512507 | tig0023210:+17236 | Msa1406460:CDS |
| AAACAAACAGAAGCACTTGA+AGG | 0.514691 | tig0023210:-17104 | None:intergenic |
| CAATTGACCCAGTAAAAGAA+AGG | 0.524155 | tig0023210:-17748 | None:intergenic |
| TCTGATGTTGCAACTGGTGG+AGG | 0.524370 | tig0023210:+17683 | Msa1406460:CDS |
| CTCCTTCTTCCAATCAGGGT+TGG | 0.525262 | tig0023210:-19034 | None:intergenic |
| GGGTTAGTTGATGCTATTGG+CGG | 0.525269 | tig0023210:+17998 | Msa1406460:CDS |
| ATTTCTTGAAGCCAGAATGC+GGG | 0.525455 | tig0023210:-16737 | None:intergenic |
| TCAACATCAGTGTACTCCAT+TGG | 0.529318 | tig0023210:+19063 | Msa1406460:CDS |
| ACGAAATCAAACTCACCCTT+GGG | 0.529474 | tig0023210:-16714 | None:intergenic |
| TTACAAGGAAATATTTCCGA+TGG | 0.530898 | tig0023210:+16828 | Msa1406460:CDS |
| ATTTGGCAACAATAATTCAT+GGG | 0.533369 | tig0023210:+18289 | Msa1406460:CDS |
| GTCAGTGCCAACTGGTCCAT+CGG | 0.538824 | tig0023210:-16844 | None:intergenic |
| ACTATCTTCCATTTCCATTG+TGG | 0.545148 | tig0023210:+16599 | Msa1406460:CDS |
| GTTGTTTGAGATGAAGATGA+AGG | 0.549690 | tig0023210:-16511 | None:intergenic |
| GCCTCGGAGCATGTGGAACA+TGG | 0.549933 | tig0023210:+16786 | Msa1406460:CDS |
| ACAAATTTGATCCAACCAGT+TGG | 0.551473 | tig0023210:-17225 | None:intergenic |
| ACTAACGTTGGTTCTTGAGT+AGG | 0.554396 | tig0023210:-16645 | None:intergenic |
| TCATGTCTATTCCAACTGGT+TGG | 0.556000 | tig0023210:+17214 | Msa1406460:CDS |
| TCCACTTCAGGTAATGGTAA+CGG | 0.563991 | tig0023210:+16681 | Msa1406460:CDS |
| TCTGTTAGCCTCGGAGCATG+TGG | 0.564327 | tig0023210:+16779 | Msa1406460:CDS |
| CAGACAAAGAAGCAACTACT+GGG | 0.565420 | tig0023210:-17664 | None:intergenic |
| GGTCAATTGGTGTGGCATCA+GGG | 0.569385 | tig0023210:+17762 | Msa1406460:CDS |
| TACCAACCCTGATTGGAAGA+AGG | 0.572792 | tig0023210:+19032 | Msa1406460:CDS |
| GGGGTTTCGGGAAGATGAAG+AGG | 0.574598 | tig0023210:-16543 | None:intergenic |
| TTCAGGAATAACAGGAGGGA+TGG | 0.577523 | tig0023210:+19096 | Msa1406460:three_prime_UTR |
| ATATTGAGAATCAATTTACA+AGG | 0.578147 | tig0023210:+16813 | Msa1406460:CDS |
| TCCGCTGTGTTTCTTTACAT+AGG | 0.579171 | tig0023210:+16933 | Msa1406460:CDS |
| TGAGGGATTTGTGAATGTGA+GGG | 0.580001 | tig0023210:-16563 | None:intergenic |
| GTAAGGACGCAGCTTCTCAT+GGG | 0.580359 | tig0023210:+17978 | Msa1406460:CDS |
| AGGGAAAGTTTGGACCGGTA+AGG | 0.580820 | tig0023210:+17961 | Msa1406460:CDS |
| GTCGTCTATCTGAATTAATG+TGG | 0.582403 | tig0023210:+17612 | Msa1406460:CDS |
| GTACACAAACTTAAAGAGGA+GGG | 0.582498 | tig0023210:+17308 | Msa1406460:CDS |
| ACAGCTCCTTCTTCCAATCA+GGG | 0.583747 | tig0023210:-19038 | None:intergenic |
| TGGATGTTGTATGCCTTCAA+AGG | 0.592887 | tig0023210:+18950 | Msa1406460:CDS |
| AGTTGGAATAGACATGATCC+AGG | 0.594385 | tig0023210:-17208 | None:intergenic |
| GATAGACGACAAGACCCTCC+CGG | 0.596316 | tig0023210:-17599 | None:intergenic |
| GGTTAAGACTCTGTTAGCCT+CGG | 0.596334 | tig0023210:+16770 | Msa1406460:CDS |
| AATATTTCCGATGGACCAGT+TGG | 0.597583 | tig0023210:+16837 | Msa1406460:CDS |
| TACGGATTGATTGTCCGGGA+GGG | 0.601418 | tig0023210:+17585 | Msa1406460:CDS |
| TTGAGGGATTTGTGAATGTG+AGG | 0.606072 | tig0023210:-16564 | None:intergenic |
| GCACAAGGGAAAGTTTGGAC+CGG | 0.606671 | tig0023210:+17956 | Msa1406460:CDS |
| GAGGGATTTGTGAATGTGAG+GGG | 0.607039 | tig0023210:-16562 | None:intergenic |
| ATTATACGGATTGATTGTCC+GGG | 0.607923 | tig0023210:+17581 | Msa1406460:CDS |
| GGTTAGTTGATGCTATTGGC+GGG | 0.616077 | tig0023210:+17999 | Msa1406460:CDS |
| TACACAAACTTAAAGAGGAG+GGG | 0.616915 | tig0023210:+17309 | Msa1406460:CDS |
| AATTTCTTGAAGCCAGAATG+CGG | 0.621440 | tig0023210:-16738 | None:intergenic |
| TGCTGCAACACGGTCCACAA+TGG | 0.622831 | tig0023210:-16613 | None:intergenic |
| AGTACACAAACTTAAAGAGG+AGG | 0.624938 | tig0023210:+17307 | Msa1406460:CDS |
| GAAGATGAAAACACTAACGT+TGG | 0.631994 | tig0023210:-16657 | None:intergenic |
| TGACATATTGTATCAGGACC+AGG | 0.643786 | tig0023210:+17340 | Msa1406460:CDS |
| GTGCATTCAGGAATAACAGG+AGG | 0.649237 | tig0023210:+19091 | Msa1406460:three_prime_UTR |
| CCTGAATGCACATCAACCAA+TGG | 0.649333 | tig0023210:-19079 | None:intergenic |
| GTAGTGCTTACAAACATTAG+GGG | 0.660253 | tig0023210:-17156 | None:intergenic |
| AATATGGAATCAATTGCACA+AGG | 0.663725 | tig0023210:+17941 | Msa1406460:CDS |
| GGAGTGCAGTCACTGCCTCA+CGG | 0.663983 | tig0023210:-17187 | None:intergenic |
| AGCGTAACCTGACTGTCTTG+AGG | 0.664382 | tig0023210:-18064 | None:intergenic |
| AGAAACACAGCGGACACACG+AGG | 0.667158 | tig0023210:-16924 | None:intergenic |
| TGCATTCAGGAATAACAGGA+GGG | 0.668569 | tig0023210:+19092 | Msa1406460:three_prime_UTR |
| TTTCGGGAAGATGAAGAGGA+TGG | 0.668798 | tig0023210:-16539 | None:intergenic |
| ATATATTGCTCATGTGTCGT+AGG | 0.670620 | tig0023210:-17872 | None:intergenic |
| TAGTGCTTACAAACATTAGG+GGG | 0.677292 | tig0023210:-17155 | None:intergenic |
| GAAGTAAAGATGCTGCAACA+CGG | 0.695209 | tig0023210:-16623 | None:intergenic |
| ATATGGAATCAATTGCACAA+GGG | 0.697277 | tig0023210:+17942 | Msa1406460:CDS |
| TCCATGTTCCACATGCTCCG+AGG | 0.700945 | tig0023210:-16787 | None:intergenic |
| TGGAAATGGAAGATAGTGTG+CGG | 0.715103 | tig0023210:-16593 | None:intergenic |
| TAATGTTTGTAAGCACTACG+AGG | 0.742944 | tig0023210:+17160 | Msa1406460:CDS |
| GGACACACGAGGATCAAATG+CGG | 0.763717 | tig0023210:-16913 | None:intergenic |
| ACCTATGTAAAGAAACACAG+CGG | 0.782898 | tig0023210:-16934 | None:intergenic |
| GCACTACGAGGATAGCCGTG+AGG | 0.785191 | tig0023210:+17172 | Msa1406460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCAAATTTTAAAAAATC+TGG | + | tig0023210:17002-17021 | Msa1406460:CDS | 10.0% |
| !! | ATATTGAGAATCAATTTACA+AGG | + | tig0023210:16813-16832 | Msa1406460:CDS | 20.0% |
| !!! | AATCTCTAAAATTGACAAAA+TGG | - | tig0023210:17406-17425 | None:intergenic | 20.0% |
| !! | TTTAGAGATTATTCTTTAGT+TGG | + | tig0023210:17416-17435 | Msa1406460:CDS | 20.0% |
| !!! | ACCTTGATAATTTATATCAA+AGG | + | tig0023210:17792-17811 | Msa1406460:CDS | 20.0% |
| !! | TCCTTTGATATAAATTATCA+AGG | - | tig0023210:17796-17815 | None:intergenic | 20.0% |
| !! | GTTAATTACTTATTTCGTTA+TGG | + | tig0023210:18424-18443 | Msa1406460:intron | 20.0% |
| !!! | GTTTCTAAATTTTAGACTTA+TGG | + | tig0023210:18898-18917 | Msa1406460:intron | 20.0% |
| ! | CTTCAAGAAATTTATTGTGA+AGG | + | tig0023210:16749-16768 | Msa1406460:CDS | 25.0% |
| !! | TACATAGGTGATTTTTATTG+TGG | + | tig0023210:16948-16967 | Msa1406460:CDS | 25.0% |
| !! | TATGTTTTCGGTACAATTAA+AGG | - | tig0023210:17050-17069 | None:intergenic | 25.0% |
| !! | CTAGCAATGTAATATGTTTT+CGG | - | tig0023210:17062-17081 | None:intergenic | 25.0% |
| !! | TCTAAAATTGACAAAATGGA+TGG | - | tig0023210:17402-17421 | None:intergenic | 25.0% |
| ! | ATTGTACTTGTTTGAATTGA+TGG | - | tig0023210:17507-17526 | None:intergenic | 25.0% |
| ! | CATGATGTCAAAAAAATTCA+AGG | + | tig0023210:17553-17572 | Msa1406460:CDS | 25.0% |
| !! | AATTCAAGGCACTTATTATA+CGG | + | tig0023210:17567-17586 | Msa1406460:CDS | 25.0% |
| ! | GTCAATGACAATAAAGAATA+TGG | + | tig0023210:17925-17944 | Msa1406460:CDS | 25.0% |
| ! | CATTAACATAATCATAGAGT+AGG | - | tig0023210:18241-18260 | None:intergenic | 25.0% |
| ! | AATTTGGCAACAATAATTCA+TGG | + | tig0023210:18288-18307 | Msa1406460:CDS | 25.0% |
| ! | ATTTGGCAACAATAATTCAT+GGG | + | tig0023210:18289-18308 | Msa1406460:CDS | 25.0% |
| ! | GTGTCATACAAAAATTCAAT+TGG | - | tig0023210:18375-18394 | None:intergenic | 25.0% |
| ! | AAAAACATAGAAGTCAAAAC+AGG | - | tig0023210:18455-18474 | None:intergenic | 25.0% |
| !!! | TTACCAGTAATTTTTTTGCT+AGG | + | tig0023210:18779-18798 | Msa1406460:intron | 25.0% |
| ! | AATCCTAGCAAAAAAATTAC+TGG | - | tig0023210:18785-18804 | None:intergenic | 25.0% |
| !!! | AGTAATTTTTTTGCTAGGAT+TGG | + | tig0023210:18784-18803 | Msa1406460:intron | 25.0% |
| !!! | AATTTTCTAAAATCAAGGAC+TGG | - | tig0023210:18834-18853 | None:intergenic | 25.0% |
| !!! | AGTCCTTGATTTTAGAAAAT+TGG | + | tig0023210:18833-18852 | Msa1406460:intron | 25.0% |
| !!! | GAACCAATTTTCTAAAATCA+AGG | - | tig0023210:18839-18858 | None:intergenic | 25.0% |
| ! | AAAATTTAGAAACCAGAAAC+CGG | - | tig0023210:18891-18910 | None:intergenic | 25.0% |
| ! | CTGCAGAAAAAAAAAACAAA+TGG | - | tig0023210:18928-18947 | None:intergenic | 25.0% |
| TTACAAGGAAATATTTCCGA+TGG | + | tig0023210:16828-16847 | Msa1406460:CDS | 30.0% | |
| ! | TAGGTGATTTTTATTGTGGT+TGG | + | tig0023210:16952-16971 | Msa1406460:CDS | 30.0% |
| ! | AGGTGATTTTTATTGTGGTT+GGG | + | tig0023210:16953-16972 | Msa1406460:CDS | 30.0% |
| !! | GATCAAATTTGTTGTTCTAG+AGG | + | tig0023210:17236-17255 | Msa1406460:CDS | 30.0% |
| ! | GTTGAAAACCTTTTAAACCA+AGG | + | tig0023210:17275-17294 | Msa1406460:CDS | 30.0% |
| GATAGATTCCTTGGTTTAAA+AGG | - | tig0023210:17286-17305 | None:intergenic | 30.0% | |
| TCTAGTACACAAACTTAAAG+AGG | + | tig0023210:17304-17323 | Msa1406460:CDS | 30.0% | |
| TTAGTTGGAAAATCAACTGT+AGG | + | tig0023210:17431-17450 | Msa1406460:CDS | 30.0% | |
| ! | TATTATACGGATTGATTGTC+CGG | + | tig0023210:17580-17599 | Msa1406460:CDS | 30.0% |
| ! | TCTGAAAACCTTTCTTTTAC+TGG | + | tig0023210:17740-17759 | Msa1406460:CDS | 30.0% |
| ! | CTGAAAACCTTTCTTTTACT+GGG | + | tig0023210:17741-17760 | Msa1406460:CDS | 30.0% |
| AATATGGAATCAATTGCACA+AGG | + | tig0023210:17941-17960 | Msa1406460:CDS | 30.0% | |
| ATATGGAATCAATTGCACAA+GGG | + | tig0023210:17942-17961 | Msa1406460:CDS | 30.0% | |
| TGATAAGTTGTACTGAAAAC+TGG | + | tig0023210:18205-18224 | Msa1406460:intron | 30.0% | |
| GATAAGTTGTACTGAAAACT+GGG | + | tig0023210:18206-18225 | Msa1406460:intron | 30.0% | |
| TGATTATGTTAATGAGCTTG+AGG | + | tig0023210:18247-18266 | Msa1406460:intron | 30.0% | |
| TGGATGATTTAGGAGAAATT+TGG | + | tig0023210:18272-18291 | Msa1406460:intron | 30.0% | |
| ! | TTTTATGCTCAACTTGTACA+TGG | + | tig0023210:18472-18491 | Msa1406460:intron | 30.0% |
| TCTCGTATTAAAATACCACA+CGG | + | tig0023210:18551-18570 | Msa1406460:intron | 30.0% | |
| ! | AAATTTTACGTTATACCGTG+TGG | - | tig0023210:18569-18588 | None:intergenic | 30.0% |
| AATGATATTGTCAACCTTCA+TGG | - | tig0023210:18616-18635 | None:intergenic | 30.0% | |
| ! | GCATTGACACTTAAATTGAA+TGG | - | tig0023210:18714-18733 | None:intergenic | 30.0% |
| ! | ACTGTTTGATGTATTTCTGT+CGG | + | tig0023210:18862-18881 | Msa1406460:intron | 30.0% |
| !!! | TGTTTTTTTTTTCTGCAGTC+TGG | + | tig0023210:18930-18949 | Msa1406460:intron | 30.0% |
| ! | GTTGTTTGAGATGAAGATGA+AGG | - | tig0023210:16514-16533 | None:intergenic | 35.0% |
| ACTATCTTCCATTTCCATTG+TGG | + | tig0023210:16599-16618 | Msa1406460:CDS | 35.0% | |
| GAAGATGAAAACACTAACGT+TGG | - | tig0023210:16660-16679 | None:intergenic | 35.0% | |
| ! | TTTTCATCTTCTTCCACTTC+AGG | + | tig0023210:16669-16688 | Msa1406460:CDS | 35.0% |
| AATTTCTTGAAGCCAGAATG+CGG | - | tig0023210:16741-16760 | None:intergenic | 35.0% | |
| ! | ATAAGGTTTTCACTTAGCTG+AGG | - | tig0023210:16888-16907 | None:intergenic | 35.0% |
| ACCTATGTAAAGAAACACAG+CGG | - | tig0023210:16937-16956 | None:intergenic | 35.0% | |
| !! | AAACAAACAGAAGCACTTGA+AGG | - | tig0023210:17107-17126 | None:intergenic | 35.0% |
| AGTGCTTCTGTTTGTTTGTT+TGG | + | tig0023210:17110-17129 | Msa1406460:CDS | 35.0% | |
| TAGTGCTTACAAACATTAGG+GGG | - | tig0023210:17158-17177 | None:intergenic | 35.0% | |
| GTAGTGCTTACAAACATTAG+GGG | - | tig0023210:17159-17178 | None:intergenic | 35.0% | |
| CGTAGTGCTTACAAACATTA+GGG | - | tig0023210:17160-17179 | None:intergenic | 35.0% | |
| TCGTAGTGCTTACAAACATT+AGG | - | tig0023210:17161-17180 | None:intergenic | 35.0% | |
| TAATGTTTGTAAGCACTACG+AGG | + | tig0023210:17160-17179 | Msa1406460:CDS | 35.0% | |
| ACAAATTTGATCCAACCAGT+TGG | - | tig0023210:17228-17247 | None:intergenic | 35.0% | |
| TGTGTACTAGATAGATTCCT+TGG | - | tig0023210:17295-17314 | None:intergenic | 35.0% | |
| AGTACACAAACTTAAAGAGG+AGG | + | tig0023210:17307-17326 | Msa1406460:CDS | 35.0% | |
| GTACACAAACTTAAAGAGGA+GGG | + | tig0023210:17308-17327 | Msa1406460:CDS | 35.0% | |
| TACACAAACTTAAAGAGGAG+GGG | + | tig0023210:17309-17328 | Msa1406460:CDS | 35.0% | |
| ACCTGCTTGGAAGAAAAATT+GGG | + | tig0023210:17368-17387 | Msa1406460:CDS | 35.0% | |
| ! | ATTATACGGATTGATTGTCC+GGG | + | tig0023210:17581-17600 | Msa1406460:CDS | 35.0% |
| GTCGTCTATCTGAATTAATG+TGG | + | tig0023210:17612-17631 | Msa1406460:CDS | 35.0% | |
| CAATTGACCCAGTAAAAGAA+AGG | - | tig0023210:17751-17770 | None:intergenic | 35.0% | |
| ! | CTTTCTTTTACTGGGTCAAT+TGG | + | tig0023210:17749-17768 | Msa1406460:CDS | 35.0% |
| ATATATTGCTCATGTGTCGT+AGG | - | tig0023210:17875-17894 | None:intergenic | 35.0% | |
| !!! | GTAATAACGCAGCTTTTTCA+AGG | + | tig0023210:17903-17922 | Msa1406460:CDS | 35.0% |
| TATAGCTATTGCAAAACTGC+AGG | + | tig0023210:18033-18052 | Msa1406460:CDS | 35.0% | |
| ATGTTAATGAGCTTGAGGAT+TGG | + | tig0023210:18252-18271 | Msa1406460:intron | 35.0% | |
| CTGAGCTGTATCAATTAGTA+AGG | + | tig0023210:18336-18355 | Msa1406460:intron | 35.0% | |
| CATGGATAGTTAGGAATAGA+GGG | - | tig0023210:18598-18617 | None:intergenic | 35.0% | |
| TCATGGATAGTTAGGAATAG+AGG | - | tig0023210:18599-18618 | None:intergenic | 35.0% | |
| CTATTCCTAACTATCCATGA+AGG | + | tig0023210:18599-18618 | Msa1406460:intron | 35.0% | |
| GTAAAACAACAGTCCTTTGA+AGG | - | tig0023210:18966-18985 | None:intergenic | 35.0% | |
| CTTATCAGAACACAACAAAC+TGG | + | tig0023210:18985-19004 | Msa1406460:CDS | 35.0% | |
| TTGGTATAAGTACCCATTTC+CGG | - | tig0023210:19018-19037 | None:intergenic | 35.0% | |
| TTTGTGAATGTGAGGGGTTT+CGG | - | tig0023210:16559-16578 | None:intergenic | 40.0% | |
| TGAGGGATTTGTGAATGTGA+GGG | - | tig0023210:16566-16585 | None:intergenic | 40.0% | |
| TTGAGGGATTTGTGAATGTG+AGG | - | tig0023210:16567-16586 | None:intergenic | 40.0% | |
| TAGTGTGCGGTAGAATTTGA+GGG | - | tig0023210:16583-16602 | None:intergenic | 40.0% | |
| ATAGTGTGCGGTAGAATTTG+AGG | - | tig0023210:16584-16603 | None:intergenic | 40.0% | |
| TGGAAATGGAAGATAGTGTG+CGG | - | tig0023210:16596-16615 | None:intergenic | 40.0% | |
| GAAGTAAAGATGCTGCAACA+CGG | - | tig0023210:16626-16645 | None:intergenic | 40.0% | |
| !! | ACTAACGTTGGTTCTTGAGT+AGG | - | tig0023210:16648-16667 | None:intergenic | 40.0% |
| TCTTCTTCCACTTCAGGTAA+TGG | + | tig0023210:16675-16694 | Msa1406460:CDS | 40.0% | |
| ! | TCCACTTCAGGTAATGGTAA+CGG | + | tig0023210:16681-16700 | Msa1406460:CDS | 40.0% |
| !!! | TAACGGTGTTGATTTTCCCA+AGG | + | tig0023210:16698-16717 | Msa1406460:CDS | 40.0% |
| !!! | AACGGTGTTGATTTTCCCAA+GGG | + | tig0023210:16699-16718 | Msa1406460:CDS | 40.0% |
| ACGAAATCAAACTCACCCTT+GGG | - | tig0023210:16717-16736 | None:intergenic | 40.0% | |
| ATTTCTTGAAGCCAGAATGC+GGG | - | tig0023210:16740-16759 | None:intergenic | 40.0% | |
| AATATTTCCGATGGACCAGT+TGG | + | tig0023210:16837-16856 | Msa1406460:CDS | 40.0% | |
| GATCAAATGCGGCTTTCATA+AGG | - | tig0023210:16905-16924 | None:intergenic | 40.0% | |
| TCCGCTGTGTTTCTTTACAT+AGG | + | tig0023210:16933-16952 | Msa1406460:CDS | 40.0% | |
| AGTTGGAATAGACATGATCC+AGG | - | tig0023210:17211-17230 | None:intergenic | 40.0% | |
| TGGATCATGTCTATTCCAAC+TGG | + | tig0023210:17210-17229 | Msa1406460:CDS | 40.0% | |
| TCATGTCTATTCCAACTGGT+TGG | + | tig0023210:17214-17233 | Msa1406460:CDS | 40.0% | |
| CCTGATACAATATGTCAGTC+AGG | - | tig0023210:17337-17356 | None:intergenic | 40.0% | |
| CCTGACTGACATATTGTATC+AGG | + | tig0023210:17334-17353 | Msa1406460:CDS | 40.0% | |
| TGACATATTGTATCAGGACC+AGG | + | tig0023210:17340-17359 | Msa1406460:CDS | 40.0% | |
| CACCTGCTTGGAAGAAAAAT+TGG | + | tig0023210:17367-17386 | Msa1406460:CDS | 40.0% | |
| ! | ACCCAATTTTTCTTCCAAGC+AGG | - | tig0023210:17372-17391 | None:intergenic | 40.0% |
| !!! | GATTTTTGAAGCAACTGAGG+TGG | - | tig0023210:17645-17664 | None:intergenic | 40.0% |
| !!! | TGGGATTTTTGAAGCAACTG+AGG | - | tig0023210:17648-17667 | None:intergenic | 40.0% |
| CAGACAAAGAAGCAACTACT+GGG | - | tig0023210:17667-17686 | None:intergenic | 40.0% | |
| TCAGACAAAGAAGCAACTAC+TGG | - | tig0023210:17668-17687 | None:intergenic | 40.0% | |
| TCTTTGTCTGATGTTGCAAC+TGG | + | tig0023210:17677-17696 | Msa1406460:CDS | 40.0% | |
| GGAGGATACTACATAGCAAT+TGG | + | tig0023210:17701-17720 | Msa1406460:CDS | 40.0% | |
| ! | TTTTACTGGGTCAATTGGTG+TGG | + | tig0023210:17754-17773 | Msa1406460:CDS | 40.0% |
| CAATTGCACAAGGGAAAGTT+TGG | + | tig0023210:17951-17970 | Msa1406460:CDS | 40.0% | |
| !! | CATGGGTTAGTTGATGCTAT+TGG | + | tig0023210:17995-18014 | Msa1406460:CDS | 40.0% |
| ! | TTTTGCAATAGCTATAGCGC+AGG | - | tig0023210:18029-18048 | None:intergenic | 40.0% |
| GCTTGAGGATTGGATGATTT+AGG | + | tig0023210:18262-18281 | Msa1406460:intron | 40.0% | |
| GTCAACCTTCATGGATAGTT+AGG | - | tig0023210:18607-18626 | None:intergenic | 40.0% | |
| ! | GGACTGGCATTAGTAGTTTA+CGG | - | tig0023210:18818-18837 | None:intergenic | 40.0% |
| TGGATGTTGTATGCCTTCAA+AGG | + | tig0023210:18950-18969 | Msa1406460:CDS | 40.0% | |
| TGGTATAAGTACCCATTTCC+GGG | - | tig0023210:19017-19036 | None:intergenic | 40.0% | |
| GTACTTATACCAACCCTGAT+TGG | + | tig0023210:19025-19044 | Msa1406460:CDS | 40.0% | |
| TCAACATCAGTGTACTCCAT+TGG | + | tig0023210:19063-19082 | Msa1406460:CDS | 40.0% | |
| GATGTGCATTCAGGAATAAC+AGG | + | tig0023210:19088-19107 | Msa1406460:exon | 40.0% | |
| TGCATTCAGGAATAACAGGA+GGG | + | tig0023210:19092-19111 | Msa1406460:three_prime_UTR | 40.0% | |
| TTTCGGGAAGATGAAGAGGA+TGG | - | tig0023210:16542-16561 | None:intergenic | 45.0% | |
| TTGTGAATGTGAGGGGTTTC+GGG | - | tig0023210:16558-16577 | None:intergenic | 45.0% | |
| GAGGGATTTGTGAATGTGAG+GGG | - | tig0023210:16565-16584 | None:intergenic | 45.0% | |
| AACACGGTCCACAATGGAAA+TGG | - | tig0023210:16610-16629 | None:intergenic | 45.0% | |
| ACCGTTACCATTACCTGAAG+TGG | - | tig0023210:16685-16704 | None:intergenic | 45.0% | |
| GACGAAATCAAACTCACCCT+TGG | - | tig0023210:16718-16737 | None:intergenic | 45.0% | |
| ! | TTTGATTTCGTCCCGCATTC+TGG | + | tig0023210:16726-16745 | Msa1406460:CDS | 45.0% |
| ! | GGTTAAGACTCTGTTAGCCT+CGG | + | tig0023210:16770-16789 | Msa1406460:CDS | 45.0% |
| ATTGCTATCATTCGCGTGTC+TGG | + | tig0023210:17479-17498 | Msa1406460:CDS | 45.0% | |
| TTGCTATCATTCGCGTGTCT+GGG | + | tig0023210:17480-17499 | Msa1406460:CDS | 45.0% | |
| TTGTCTGATGTTGCAACTGG+TGG | + | tig0023210:17680-17699 | Msa1406460:CDS | 45.0% | |
| !! | GGGTTAGTTGATGCTATTGG+CGG | + | tig0023210:17998-18017 | Msa1406460:CDS | 45.0% |
| ! | GGTTAGTTGATGCTATTGGC+GGG | + | tig0023210:17999-18018 | Msa1406460:CDS | 45.0% |
| ! | CTGACTGTCTTGAGGTATCT+TGG | - | tig0023210:18059-18078 | None:intergenic | 45.0% |
| CAAGATACCTCAAGACAGTC+AGG | + | tig0023210:18057-18076 | Msa1406460:CDS | 45.0% | |
| AACTTCAGTCCCTGTGCTTA+AGG | + | tig0023210:18738-18757 | Msa1406460:intron | 45.0% | |
| !! | GATGTATTTCTGTCGGCTTC+CGG | + | tig0023210:18869-18888 | Msa1406460:intron | 45.0% |
| ACAACAAACTGGACAAAGCC+CGG | + | tig0023210:18996-19015 | Msa1406460:CDS | 45.0% | |
| TACCAACCCTGATTGGAAGA+AGG | + | tig0023210:19032-19051 | Msa1406460:CDS | 45.0% | |
| ACAGCTCCTTCTTCCAATCA+GGG | - | tig0023210:19041-19060 | None:intergenic | 45.0% | |
| AACAGCTCCTTCTTCCAATC+AGG | - | tig0023210:19042-19061 | None:intergenic | 45.0% | |
| CCTGAATGCACATCAACCAA+TGG | - | tig0023210:19082-19101 | None:intergenic | 45.0% | |
| ! | CCATTGGTTGATGTGCATTC+AGG | + | tig0023210:19079-19098 | Msa1406460:exon | 45.0% |
| GTGCATTCAGGAATAACAGG+AGG | + | tig0023210:19091-19110 | Msa1406460:three_prime_UTR | 45.0% | |
| TTCAGGAATAACAGGAGGGA+TGG | + | tig0023210:19096-19115 | Msa1406460:three_prime_UTR | 45.0% | |
| !! | ACCAGTTGGCACTGACTCTA+AGG | + | tig0023210:16851-16870 | Msa1406460:CDS | 50.0% |
| ACCTTAGAGTCAGTGCCAAC+TGG | - | tig0023210:16855-16874 | None:intergenic | 50.0% | |
| GGACACACGAGGATCAAATG+CGG | - | tig0023210:16916-16935 | None:intergenic | 50.0% | |
| ! | ATACGGATTGATTGTCCGGG+AGG | + | tig0023210:17584-17603 | Msa1406460:CDS | 50.0% |
| ! | TACGGATTGATTGTCCGGGA+GGG | + | tig0023210:17585-17604 | Msa1406460:CDS | 50.0% |
| TCTGATGTTGCAACTGGTGG+AGG | + | tig0023210:17683-17702 | Msa1406460:CDS | 50.0% | |
| GGTCAATTGGTGTGGCATCA+GGG | + | tig0023210:17762-17781 | Msa1406460:CDS | 50.0% | |
| CGTTCCAAAGCTTGTGTCAC+TGG | + | tig0023210:17820-17839 | Msa1406460:CDS | 50.0% | |
| TTCGCCAGTGACACAAGCTT+TGG | - | tig0023210:17827-17846 | None:intergenic | 50.0% | |
| GCACAAGGGAAAGTTTGGAC+CGG | + | tig0023210:17956-17975 | Msa1406460:CDS | 50.0% | |
| AGGGAAAGTTTGGACCGGTA+AGG | + | tig0023210:17961-17980 | Msa1406460:CDS | 50.0% | |
| ATGAGAAGCTGCGTCCTTAC+CGG | - | tig0023210:17978-17997 | None:intergenic | 50.0% | |
| GTAAGGACGCAGCTTCTCAT+GGG | + | tig0023210:17978-17997 | Msa1406460:CDS | 50.0% | |
| AGCGTAACCTGACTGTCTTG+AGG | - | tig0023210:18067-18086 | None:intergenic | 50.0% | |
| GAACCTCTGCCTTAAGCACA+GGG | - | tig0023210:18750-18769 | None:intergenic | 50.0% | |
| AGAACCTCTGCCTTAAGCAC+AGG | - | tig0023210:18751-18770 | None:intergenic | 50.0% | |
| AACTGGACAAAGCCCGGAAA+TGG | + | tig0023210:19002-19021 | Msa1406460:CDS | 50.0% | |
| ACTGGACAAAGCCCGGAAAT+GGG | + | tig0023210:19003-19022 | Msa1406460:CDS | 50.0% | |
| CTCCTTCTTCCAATCAGGGT+TGG | - | tig0023210:19037-19056 | None:intergenic | 50.0% | |
| GGGGTTTCGGGAAGATGAAG+AGG | - | tig0023210:16546-16565 | None:intergenic | 55.0% | |
| TGCTGCAACACGGTCCACAA+TGG | - | tig0023210:16616-16635 | None:intergenic | 55.0% | |
| ! | TCTGTTAGCCTCGGAGCATG+TGG | + | tig0023210:16779-16798 | Msa1406460:CDS | 55.0% |
| TCCATGTTCCACATGCTCCG+AGG | - | tig0023210:16790-16809 | None:intergenic | 55.0% | |
| GTCAGTGCCAACTGGTCCAT+CGG | - | tig0023210:16847-16866 | None:intergenic | 55.0% | |
| AGAAACACAGCGGACACACG+AGG | - | tig0023210:16927-16946 | None:intergenic | 55.0% | |
| CTTCCAAGCAGGTGAAGACC+TGG | - | tig0023210:17361-17380 | None:intergenic | 55.0% | |
| GATAGACGACAAGACCCTCC+CGG | - | tig0023210:17602-17621 | None:intergenic | 55.0% | |
| GGGTCAATTGGTGTGGCATC+AGG | + | tig0023210:17761-17780 | Msa1406460:CDS | 55.0% | |
| GGTAAGGACGCAGCTTCTCA+TGG | + | tig0023210:17977-17996 | Msa1406460:CDS | 55.0% | |
| AGTTGTGTTGCGCACTGAGC+AGG | + | tig0023210:18124-18143 | Msa1406460:intron | 55.0% | |
| AGTCCCTGTGCTTAAGGCAG+AGG | + | tig0023210:18744-18763 | Msa1406460:intron | 55.0% | |
| !! | TTCTGTCGGCTTCCGGTTTC+TGG | + | tig0023210:18876-18895 | Msa1406460:intron | 55.0% |
| GCCTCGGAGCATGTGGAACA+TGG | + | tig0023210:16786-16805 | Msa1406460:CDS | 60.0% | |
| GCACTACGAGGATAGCCGTG+AGG | + | tig0023210:17172-17191 | Msa1406460:CDS | 60.0% | |
| GGAGTGCAGTCACTGCCTCA+CGG | - | tig0023210:17190-17209 | None:intergenic | 60.0% | |
| TGAGGCAGTGACTGCACTCC+TGG | + | tig0023210:17190-17209 | Msa1406460:CDS | 60.0% | |
| GGACCAGGTCTTCACCTGCT+TGG | + | tig0023210:17355-17374 | Msa1406460:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023210 | gene | 16474 | 19159 | 16474 | ID=Msa1406460;Name=Msa1406460 |
| tig0023210 | mRNA | 16474 | 19159 | 16474 | ID=Msa1406460-mRNA-1;Parent=Msa1406460;Name=Msa1406460-mRNA-1;_AED=0.32;_eAED=0.33;_QI=0|0|0.33|0.66|1|1|3|70|601 |
| tig0023210 | exon | 16474 | 18078 | 16474 | ID=Msa1406460-mRNA-1:exon:24611;Parent=Msa1406460-mRNA-1 |
| tig0023210 | exon | 18284 | 18342 | 18284 | ID=Msa1406460-mRNA-1:exon:24612;Parent=Msa1406460-mRNA-1 |
| tig0023210 | exon | 18948 | 19159 | 18948 | ID=Msa1406460-mRNA-1:exon:24613;Parent=Msa1406460-mRNA-1 |
| tig0023210 | CDS | 16474 | 18078 | 16474 | ID=Msa1406460-mRNA-1:cds;Parent=Msa1406460-mRNA-1 |
| tig0023210 | CDS | 18284 | 18342 | 18284 | ID=Msa1406460-mRNA-1:cds;Parent=Msa1406460-mRNA-1 |
| tig0023210 | CDS | 18948 | 19089 | 18948 | ID=Msa1406460-mRNA-1:cds;Parent=Msa1406460-mRNA-1 |
| tig0023210 | three_prime_UTR | 19090 | 19159 | 19090 | ID=Msa1406460-mRNA-1:three_prime_utr;Parent=Msa1406460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
