AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1384870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384870 MtrunA17_Chr3g0131161 96.930 456 13 1 1 456 1 455 0.0 912
Msa1384870 MtrunA17_Chr8g0356141 42.654 211 111 2 107 316 350 551 9.14e-45 166
Msa1384870 MtrunA17_Chr7g0267221 46.354 192 95 4 108 292 195 385 6.93e-44 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1384870 AT5G23610.1 37.736 371 199 6 108 452 124 488 6.43e-77 249
Msa1384870 AT5G23610.2 37.634 372 199 6 108 452 124 489 9.17e-77 248
Msa1384870 AT5G51330.2 43.842 203 97 2 107 292 290 492 5.47e-45 166
Msa1384870 AT5G51330.1 43.842 203 97 2 107 292 294 496 6.07e-45 166

Find 184 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCTCTTCTTCGCGCTTCT+TGG 0.208719 tig0020683:+59517 Msa1384870:five_prime_UTR
TTTCTTGCAGGAGATGTTTA+TGG 0.210272 tig0020683:+62116 Msa1384870:intron
CAACTTGTTGATAATGTTTC+AGG 0.228577 tig0020683:+62014 Msa1384870:CDS
TTACTATCTGGAAAATATAT+TGG 0.261036 tig0020683:-60373 None:intergenic
CGTAAATACATTGGTGATAC+TGG 0.271676 tig0020683:+60784 Msa1384870:CDS
CCCGCCACCATTAAACTAAA+AGG 0.280995 tig0020683:-62715 None:intergenic
AAGTTCAGTACTTCTTCATT+TGG 0.283704 tig0020683:-61059 None:intergenic
CTTAGTACAGGTCGGGTTAT+TGG 0.284312 tig0020683:-60751 None:intergenic
AGATCAAACTATACTGTAAA+AGG 0.292421 tig0020683:-62428 None:intergenic
GGTGGTTATAATCCTATTCT+AGG 0.293975 tig0020683:-62243 None:intergenic
TCCCTCCAGGTGCCACTTTA+CGG 0.303889 tig0020683:-60837 None:intergenic
GTTCAACCCTGACGGAATTA+TGG 0.307173 tig0020683:+60879 Msa1384870:CDS
TTTGCCAACCACTAAGTTCA+TGG 0.323165 tig0020683:+62350 Msa1384870:three_prime_UTR
GTATTATTGTCTTGTTGGTT+AGG 0.328584 tig0020683:+62488 Msa1384870:three_prime_UTR
GTCTTCAACAGGAATGAAAT+TGG 0.332023 tig0020683:+62463 Msa1384870:three_prime_UTR
AGACATCTCTTTGAGGTATC+AGG 0.343221 tig0020683:+62220 Msa1384870:exon
GATGACGTCCGCGAGGAGGC+TGG 0.343634 tig0020683:+60928 Msa1384870:CDS
CATCGTCAACAGGCATTCAT+TGG 0.346643 tig0020683:+60265 Msa1384870:CDS
TGAAGTGGAGCAACATCTTA+TGG 0.347796 tig0020683:+61526 Msa1384870:CDS
CAGTATCACCAATGTATTTA+CGG 0.351183 tig0020683:-60783 None:intergenic
GGTCTTTAGGTAGGCTTTGC+CGG 0.351234 tig0020683:+62534 Msa1384870:three_prime_UTR
GTATATTAACAGGGCAAGTA+TGG 0.358640 tig0020683:+61482 Msa1384870:intron
GGATACCACCATCCACTGTT+AGG 0.358688 tig0020683:+60968 Msa1384870:CDS
TTAACAGTTGTAGAAGAATC+TGG 0.359007 tig0020683:-61973 None:intergenic
CATTAGATCTACATTATTGT+AGG 0.362477 tig0020683:-62870 None:intergenic
TCTTCATTGAGTGGCTGAAT+TGG 0.364573 tig0020683:-61749 None:intergenic
CCGTCATCCTGAGTATTGTC+TGG 0.369164 tig0020683:-61647 None:intergenic
GGTTGATCCTCTTGCATTGT+GGG 0.373824 tig0020683:-61940 None:intergenic
GTGGATGGTGGTATCCAATA+GGG 0.379280 tig0020683:-60961 None:intergenic
TTAGTACAGGTCGGGTTATT+GGG 0.379451 tig0020683:-60750 None:intergenic
AACCTCTTCCATGAACTTAG+TGG 0.380359 tig0020683:-62358 None:intergenic
CTGGGGTTGATGACCCCTAT+TGG 0.380387 tig0020683:+60947 Msa1384870:CDS
AGTTCAGTACTTCTTCATTT+GGG 0.387011 tig0020683:-61058 None:intergenic
GGCCATCCGTGCCCCTTGTC+AGG 0.402712 tig0020683:+60990 Msa1384870:CDS
AGGTGTTACTGTTGTGTTAA+CGG 0.403039 tig0020683:-59303 None:intergenic
GGATTCTTTGAAGAATTTGC+AGG 0.406927 tig0020683:+61360 Msa1384870:CDS
GAAGAATCTGGGGTGACATT+AGG 0.411888 tig0020683:-61961 None:intergenic
GATGTATCAAACACTGTATA+TGG 0.414656 tig0020683:+62180 Msa1384870:CDS
TTCTTCTTTACTCTTAAAAC+TGG 0.421159 tig0020683:+62281 Msa1384870:three_prime_UTR
ATTCAAATGGAAAGAAAAGA+TGG 0.422345 tig0020683:+62143 Msa1384870:CDS
CGTCAGGGTTGAACCATCTT+CGG 0.426408 tig0020683:-60870 None:intergenic
AGTGGATGGTGGTATCCAAT+AGG 0.428009 tig0020683:-60962 None:intergenic
ACCAACTCGCACTGTGTTGT+CGG 0.428213 tig0020683:+59480 Msa1384870:five_prime_UTR
AGTATGGTGAGTTCGCGATA+TGG 0.430148 tig0020683:+61498 Msa1384870:CDS
TGCAAGTGCAAGTGCTTTGT+CGG 0.430693 tig0020683:-60196 None:intergenic
TAGTTTAATGGTGGCGGGTG+GGG 0.432405 tig0020683:+62720 Msa1384870:three_prime_UTR
GAAGAAAACTTGTGAAGAAA+AGG 0.432818 tig0020683:-62264 None:intergenic
AAGTACAAGTTCTCATTGAA+TGG 0.433501 tig0020683:-62578 None:intergenic
TTTGTTTAACTTAGAGCTGC+AGG 0.433568 tig0020683:+60223 Msa1384870:five_prime_UTR
TGGTTGTATTATTGTCTTGT+TGG 0.436350 tig0020683:+62483 Msa1384870:three_prime_UTR
GAGAAAGAAGCATGACAGTA+AGG 0.439317 tig0020683:+60543 Msa1384870:CDS
GAAACTGCTTAAAATAGAAA+TGG 0.441793 tig0020683:+61035 Msa1384870:CDS
GTTGCTAATGCAGCTGACTT+TGG 0.445231 tig0020683:+60169 Msa1384870:intron
AGGATGACGGATTGGCAACT+TGG 0.448641 tig0020683:+61660 Msa1384870:CDS
TGTTTATGGATTTATTCAAA+TGG 0.448971 tig0020683:+62130 Msa1384870:CDS
AGCTGCAGGGATGGATAGGT+GGG 0.450023 tig0020683:+60237 Msa1384870:exon
GTGGGGTTATGTGTCGCATA+TGG 0.455859 tig0020683:+62737 Msa1384870:three_prime_UTR
AGTATCACCAATGTATTTAC+GGG 0.456584 tig0020683:-60782 None:intergenic
TCATCTTGTAGATGTCCTAT+AGG 0.457242 tig0020683:+62637 Msa1384870:three_prime_UTR
ATTTGAGGCAGGTCTTCAAC+AGG 0.457533 tig0020683:+62452 Msa1384870:three_prime_UTR
CGGAATTATGGAGTATTGGT+TGG 0.461416 tig0020683:+60891 Msa1384870:CDS
TTTGGATAGCAGAGATATGC+AGG 0.462744 tig0020683:+61143 Msa1384870:intron
CTGACGGAATTATGGAGTAT+TGG 0.463406 tig0020683:+60887 Msa1384870:CDS
GTGGGAGGTGCTGAAGGCAG+AGG 0.464284 tig0020683:+60711 Msa1384870:CDS
ATGACGTCCGCGAGGAGGCT+GGG 0.464713 tig0020683:+60929 Msa1384870:CDS
CAATACTCCATAATTCCGTC+AGG 0.466213 tig0020683:-60886 None:intergenic
CTAAAAGTGGTGCACTCTCT+TGG 0.466483 tig0020683:-61581 None:intergenic
TTAGTTTAATGGTGGCGGGT+GGG 0.466736 tig0020683:+62719 Msa1384870:three_prime_UTR
CAACCGCCTAACTGAAATCA+TGG 0.467995 tig0020683:+61339 Msa1384870:CDS
TTTAGTACAGGTCTTTAGGT+AGG 0.472068 tig0020683:+62525 Msa1384870:three_prime_UTR
TGAGGTATCAGGCCTAGAAT+AGG 0.473853 tig0020683:+62231 Msa1384870:three_prime_UTR
GTGGGGTGTTCATCGTCAAC+AGG 0.476341 tig0020683:+60255 Msa1384870:CDS
ACCTCAATAAGCTGACCATA+AGG 0.476397 tig0020683:-60478 None:intergenic
GTATAGTTTGATCTAATTTG+AGG 0.478849 tig0020683:+62437 Msa1384870:three_prime_UTR
GAGCTGCAGGGATGGATAGG+TGG 0.485530 tig0020683:+60236 Msa1384870:exon
TTTAGTTTAATGGTGGCGGG+TGG 0.486710 tig0020683:+62718 Msa1384870:three_prime_UTR
AAGAATCCATGATTTCAGTT+AGG 0.487830 tig0020683:-61345 None:intergenic
GGCATAAGAACAACTTAGTC+GGG 0.487977 tig0020683:-62679 None:intergenic
TGGGAGGTGCTGAAGGCAGA+GGG 0.492323 tig0020683:+60712 Msa1384870:CDS
TAACAGTTGTAGAAGAATCT+GGG 0.496287 tig0020683:-61972 None:intergenic
AGCTGATCTTAGTACAGGTC+GGG 0.496477 tig0020683:-60758 None:intergenic
AGCATGACAGTAAGGATAGA+TGG 0.497539 tig0020683:+60551 Msa1384870:CDS
GGACTGATCGGTTCCGAAGA+TGG 0.500965 tig0020683:+60857 Msa1384870:CDS
GCCTTATGGTCAGCTTATTG+AGG 0.505640 tig0020683:+60477 Msa1384870:CDS
TGACGTCCGCGAGGAGGCTG+GGG 0.505696 tig0020683:+60930 Msa1384870:CDS
CTAGCTAACATGTAAAATAC+CGG 0.506948 tig0020683:-62553 None:intergenic
GACTATGATTTGAGCAATGT+GGG 0.508900 tig0020683:+59370 Msa1384870:five_prime_UTR
AGGTTGATCCTCTTGCATTG+TGG 0.510835 tig0020683:-61941 None:intergenic
AGTTTGATCTAATTTGAGGC+AGG 0.512861 tig0020683:+62441 Msa1384870:three_prime_UTR
TTGGTTGGAGAGGGCTGACT+TGG 0.513352 tig0020683:+60906 Msa1384870:CDS
ATCCTGACAAGGGGCACGGA+TGG 0.514234 tig0020683:-60992 None:intergenic
TTAGTCAGTTCTTCATTGAG+TGG 0.514458 tig0020683:-61758 None:intergenic
GAGGTGAAAGAGGAGTATGC+TGG 0.516120 tig0020683:+60496 Msa1384870:CDS
GAAGAATCAGCATCCTGACA+AGG 0.520021 tig0020683:-61003 None:intergenic
TTAGAGCTGCAGGGATGGAT+AGG 0.521038 tig0020683:+60233 Msa1384870:exon
ATGAAGTAGACATCTCTTTG+AGG 0.522762 tig0020683:+62213 Msa1384870:exon
GTCAACAGGCATTCATTGGT+TGG 0.523113 tig0020683:+60269 Msa1384870:CDS
TTCTGTTACTAGGAAGGAAG+AGG 0.524484 tig0020683:+60309 Msa1384870:CDS
GACGGATTGGCAACTTGGAT+AGG 0.527728 tig0020683:+61665 Msa1384870:CDS
CTGAATTGGCATGCCTGAGT+AGG 0.528503 tig0020683:-61735 None:intergenic
TTCTACAACTGTTAATTCAA+AGG 0.528922 tig0020683:+61981 Msa1384870:CDS
AACCACTAAGTTCATGGAAG+AGG 0.533655 tig0020683:+62356 Msa1384870:three_prime_UTR
GGTCAATGTGCTTCAGTAAG+TGG 0.534563 tig0020683:-60816 None:intergenic
CGGGCAGCTGATCTTAGTAC+AGG 0.536563 tig0020683:-60763 None:intergenic
GAAGCTTAGAGAGGTGAAAG+AGG 0.537563 tig0020683:+60453 Msa1384870:CDS
TTGAAATAATAGTCATGTTG+AGG 0.537928 tig0020683:+61909 Msa1384870:intron
CAGCTGATCTTAGTACAGGT+CGG 0.541011 tig0020683:-60759 None:intergenic
ACGGATTGGCAACTTGGATA+GGG 0.541184 tig0020683:+61666 Msa1384870:CDS
AAGCATGTGGGAGGTGCTGA+AGG 0.543073 tig0020683:+60705 Msa1384870:CDS
GGGCATAAGAACAACTTAGT+CGG 0.545080 tig0020683:-62680 None:intergenic
TTTCTTGAAGATCCCTACTC+AGG 0.547860 tig0020683:+61722 Msa1384870:CDS
TCACCTCTCTAAGCTGACTA+AGG 0.547878 tig0020683:-60414 None:intergenic
AAAGATGGAGCAGCAGCTGT+TGG 0.548685 tig0020683:+62158 Msa1384870:CDS
TTCTGAAGGAGGACTAAAAG+TGG 0.548840 tig0020683:-61594 None:intergenic
GATACCACCATCCACTGTTA+GGG 0.550025 tig0020683:+60969 Msa1384870:CDS
GAAAACTGAAAGTAACATGA+TGG 0.552332 tig0020683:+61188 Msa1384870:CDS
GGAGGTGCTGAAGGCAGAGG+GGG 0.552568 tig0020683:+60714 Msa1384870:CDS
TATGGAGTATTGGTTGGAGA+GGG 0.553818 tig0020683:+60897 Msa1384870:CDS
AGGTGAAAGAGGAGTATGCT+GGG 0.555325 tig0020683:+60497 Msa1384870:CDS
TTGTTTAACTTAGAGCTGCA+GGG 0.555987 tig0020683:+60224 Msa1384870:five_prime_UTR
CGGAACCGATCAGTCCCTCC+AGG 0.556285 tig0020683:-60850 None:intergenic
TTAACTTAGAGCTGCAGGGA+TGG 0.557996 tig0020683:+60228 Msa1384870:exon
GAAAACTTGTGAAGAAAAGG+TGG 0.559690 tig0020683:-62261 None:intergenic
TTAGAATTCAACATCAGTGA+AGG 0.562148 tig0020683:-62797 None:intergenic
CAATTTGCAGCTCAACAAGC+AGG 0.562189 tig0020683:-62389 None:intergenic
CTCTAAGCTGACTAAGGCTG+AGG 0.562519 tig0020683:-60408 None:intergenic
GCAGGAGCTCATTGCCCAGA+AGG 0.562853 tig0020683:+61161 Msa1384870:CDS
AAGAACTGACTAACAAGAAG+AGG 0.565105 tig0020683:+61768 Msa1384870:CDS
TGCAGCTCAACAAGCAGGTG+AGG 0.569589 tig0020683:-62384 None:intergenic
GAAGCACATTGACCGTAAAG+TGG 0.570384 tig0020683:+60825 Msa1384870:CDS
CTAAAAGGCAAGAGTAGCGA+GGG 0.571358 tig0020683:-62700 None:intergenic
TGAATTGGCATGCCTGAGTA+GGG 0.572022 tig0020683:-61734 None:intergenic
CGCGATATGGAAAACTGAAG+TGG 0.573314 tig0020683:+61511 Msa1384870:CDS
TCAGCTTATTGAGGTGAAAG+AGG 0.574832 tig0020683:+60486 Msa1384870:CDS
AATCCATGATTTCAGTTAGG+CGG 0.575656 tig0020683:-61342 None:intergenic
TGGCACCTGGAGGGACTGAT+CGG 0.577271 tig0020683:+60845 Msa1384870:CDS
CGTCATCCTGAGTATTGTCT+GGG 0.578265 tig0020683:-61646 None:intergenic
CGAAGATGGTTCAACCCTGA+CGG 0.579824 tig0020683:+60871 Msa1384870:CDS
TACTAGGAAGGAAGAGGACT+CGG 0.580045 tig0020683:+60315 Msa1384870:CDS
ATTGTAGTATATGCCAAGGT+AGG 0.581707 tig0020683:-62829 None:intergenic
CTTGGATGACGTCCGCGAGG+AGG 0.584682 tig0020683:+60924 Msa1384870:CDS
TCTTCCATGAACTTAGTGGT+TGG 0.588265 tig0020683:-62354 None:intergenic
CAGCATCCTGACAAGGGGCA+CGG 0.588448 tig0020683:-60996 None:intergenic
CAATACTCAGGATGACGGAT+TGG 0.588917 tig0020683:+61652 Msa1384870:CDS
CGGATGGCCCTAACAGTGGA+TGG 0.589422 tig0020683:-60976 None:intergenic
CTTGCAAGGAACTTATGAAG+TGG 0.591648 tig0020683:+61302 Msa1384870:CDS
TCTTCAAGAAAACACTCTTG+TGG 0.592785 tig0020683:-61710 None:intergenic
TCTTCCTTCCTAGTAACAGA+AGG 0.594292 tig0020683:-60307 None:intergenic
TTATGGAGTATTGGTTGGAG+AGG 0.594798 tig0020683:+60896 Msa1384870:CDS
ACCGTAAAGTGGCACCTGGA+GGG 0.600671 tig0020683:+60836 Msa1384870:CDS
TCAGCTGCCCGTAAATACAT+TGG 0.601607 tig0020683:+60775 Msa1384870:CDS
GAGGTGAAAGAGGAGCCTTA+TGG 0.602537 tig0020683:+60463 Msa1384870:CDS
AGGATAGATGGTCAAGCGAG+AGG 0.602598 tig0020683:+60563 Msa1384870:CDS
CAGCCTTAGTCAGCTTAGAG+AGG 0.603304 tig0020683:+60411 Msa1384870:CDS
CACTAACCCAGACAATACTC+AGG 0.613204 tig0020683:+61640 Msa1384870:CDS
AAGAATCAGCATCCTGACAA+GGG 0.613306 tig0020683:-61002 None:intergenic
TAGAATTCAACATCAGTGAA+GGG 0.620272 tig0020683:-62796 None:intergenic
AATCTAATGTAGGTACAAGT+CGG 0.623854 tig0020683:+60675 Msa1384870:intron
GAATATTGTAGTATATGCCA+AGG 0.623890 tig0020683:-62833 None:intergenic
GGCACGGATGGCCCTAACAG+TGG 0.626312 tig0020683:-60980 None:intergenic
ATTGACCGTAAAGTGGCACC+TGG 0.626391 tig0020683:+60832 Msa1384870:CDS
GCTGATACCCACAATGCAAG+AGG 0.632260 tig0020683:+61933 Msa1384870:CDS
ACTAAAAGGCAAGAGTAGCG+AGG 0.637851 tig0020683:-62701 None:intergenic
CCAGACAATACTCAGGATGA+CGG 0.639358 tig0020683:+61647 Msa1384870:CDS
AACAGTTGTAGAAGAATCTG+GGG 0.639407 tig0020683:-61971 None:intergenic
TGACTATGATTTGAGCAATG+TGG 0.639748 tig0020683:+59369 Msa1384870:five_prime_UTR
GCCGACAACACAGTGCGAGT+TGG 0.640849 tig0020683:-59481 None:intergenic
TGGATGGTGGTATCCAATAG+GGG 0.643639 tig0020683:-60960 None:intergenic
AGTCGGCTGAACAAAGCATG+TGG 0.643899 tig0020683:+60692 Msa1384870:CDS
GTCGGCTGAACAAAGCATGT+GGG 0.649689 tig0020683:+60693 Msa1384870:CDS
GTCTTGTGAGAAGCTTAGAG+AGG 0.651620 tig0020683:+60444 Msa1384870:CDS
GGCTGAACAAAGCATGTGGG+AGG 0.654214 tig0020683:+60696 Msa1384870:CDS
AACTGAAAGTAACATGATGG+AGG 0.656525 tig0020683:+61191 Msa1384870:CDS
CATCAACCCCAGCCTCCTCG+CGG 0.661718 tig0020683:-60936 None:intergenic
AGAATCAGCATCCTGACAAG+GGG 0.662008 tig0020683:-61001 None:intergenic
GGGAGGTGCTGAAGGCAGAG+GGG 0.662463 tig0020683:+60713 Msa1384870:CDS
GACCGTAAAGTGGCACCTGG+AGG 0.665408 tig0020683:+60835 Msa1384870:CDS
TCTTTCACTACTTTCTCGCG+AGG 0.672061 tig0020683:-59323 None:intergenic
AATACTCCATAATTCCGTCA+GGG 0.681790 tig0020683:-60885 None:intergenic
TCAATGGCAGAAGACTTGCA+AGG 0.688837 tig0020683:+61288 Msa1384870:intron
GCTGCAGGGATGGATAGGTG+GGG 0.693071 tig0020683:+60238 Msa1384870:exon
ATGGCCCTAACAGTGGATGG+TGG 0.700088 tig0020683:-60973 None:intergenic
ACTATGATTTGAGCAATGTG+GGG 0.707382 tig0020683:+59371 Msa1384870:five_prime_UTR
TGACTTGGATGACGTCCGCG+AGG 0.712793 tig0020683:+60921 Msa1384870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCTAATAATTTTATT+TGG + tig0020683:61125-61144 Msa1384870:intron 10.0%
!! ATTAACTCTATATAATTACT+TGG - tig0020683:60650-60669 None:intergenic 15.0%
!!! TGAATGCTTTAATATTTTAA+TGG + tig0020683:61221-61240 Msa1384870:intron 15.0%
!! GTATATATTCAAGATTTAAT+GGG + tig0020683:61382-61401 Msa1384870:intron 15.0%
!! TTACTATCTGGAAAATATAT+TGG - tig0020683:60376-60395 None:intergenic 20.0%
!! GCTATCCAAATAAAATTATT+AGG - tig0020683:61133-61152 None:intergenic 20.0%
!! GGTATATATTCAAGATTTAA+TGG + tig0020683:61381-61400 Msa1384870:intron 20.0%
!!! AAATTAACTTTTTTCCTTCT+TGG - tig0020683:61866-61885 None:intergenic 20.0%
!! AATAGATCATGAATATAAGA+AGG - tig0020683:62093-62112 None:intergenic 20.0%
!! TGTTTATGGATTTATTCAAA+TGG + tig0020683:62130-62149 Msa1384870:CDS 20.0%
!!! TTCTCTTCTTACGTTATTTT+TGG + tig0020683:59454-59473 Msa1384870:five_prime_UTR 25.0%
! ATTGAAAAAATGGGAGAAAT+TGG - tig0020683:59558-59577 None:intergenic 25.0%
! AAAACGCGAATTGAAAAAAT+GGG - tig0020683:59567-59586 None:intergenic 25.0%
!! TCGTACTTTGTTTCTTAATT+TGG + tig0020683:59624-59643 Msa1384870:intron 25.0%
!! CGTACTTTGTTTCTTAATTT+GGG + tig0020683:59625-59644 Msa1384870:intron 25.0%
!! TTGTTTCTTAATTTGGGATT+AGG + tig0020683:59631-59650 Msa1384870:intron 25.0%
!! TGTTTCTTAATTTGGGATTA+GGG + tig0020683:59632-59651 Msa1384870:intron 25.0%
!!! TTGATTACTCTTTGATTTGA+TGG + tig0020683:59781-59800 Msa1384870:intron 25.0%
! AGGTTATATAGAGAAGATAT+TGG + tig0020683:59825-59844 Msa1384870:intron 25.0%
! AGTAAAAACATTGGATTTCT+TGG - tig0020683:59920-59939 None:intergenic 25.0%
! AATAGCTCATACATTAGAAA+AGG - tig0020683:59949-59968 None:intergenic 25.0%
!! TTTTCTAATGTATGAGCTAT+TGG + tig0020683:59948-59967 Msa1384870:intron 25.0%
! TTTCTAATGTATGAGCTATT+GGG + tig0020683:59949-59968 Msa1384870:intron 25.0%
! TTACAAACGACAGTTAATTA+TGG - tig0020683:60004-60023 None:intergenic 25.0%
! ATATGTGATTAAATCAACCT+TGG + tig0020683:60088-60107 Msa1384870:intron 25.0%
!! ATTTTCCAGATAGTAAGAAA+AGG + tig0020683:60380-60399 Msa1384870:CDS 25.0%
! AACTCTATATAATTACTTGG+TGG - tig0020683:60647-60666 None:intergenic 25.0%
! TTAATCATGCAATCTAATGT+AGG + tig0020683:60665-60684 Msa1384870:intron 25.0%
! GAAACTGCTTAAAATAGAAA+TGG + tig0020683:61035-61054 Msa1384870:CDS 25.0%
! TGCTTTATGTTGAATTTCAA+TGG + tig0020683:61272-61291 Msa1384870:intron 25.0%
! GGAGAAATCAAACAAATAAA+AGG - tig0020683:61431-61450 None:intergenic 25.0%
!! TGTAGTTCTGTATATTAACA+GGG + tig0020683:61473-61492 Msa1384870:intron 25.0%
! CAACATGACTATTATTTCAA+AGG - tig0020683:61909-61928 None:intergenic 25.0%
! TTGAAATAATAGTCATGTTG+AGG + tig0020683:61909-61928 Msa1384870:intron 25.0%
! TTCTACAACTGTTAATTCAA+AGG + tig0020683:61981-62000 Msa1384870:CDS 25.0%
!!! TGATCTATTATTTTTCTTGC+AGG + tig0020683:62104-62123 Msa1384870:intron 25.0%
! ATTCAAATGGAAAGAAAAGA+TGG + tig0020683:62143-62162 Msa1384870:CDS 25.0%
! TTCTTCTTTACTCTTAAAAC+TGG + tig0020683:62281-62300 Msa1384870:three_prime_UTR 25.0%
! AGATCAAACTATACTGTAAA+AGG - tig0020683:62431-62450 None:intergenic 25.0%
! GTATAGTTTGATCTAATTTG+AGG + tig0020683:62437-62456 Msa1384870:three_prime_UTR 25.0%
!! ATTTTGTAATTCACACCTAT+AGG - tig0020683:62655-62674 None:intergenic 25.0%
!! CTAATATAATTTTCCTACCT+TGG + tig0020683:62816-62835 Msa1384870:three_prime_UTR 25.0%
! CATTAGATCTACATTATTGT+AGG - tig0020683:62873-62892 None:intergenic 25.0%
!!! TAATCTGTTTTTGCATGTTA+AGG - tig0020683:62905-62924 None:intergenic 25.0%
AAAATGGGAGAAATTGGAAA+AGG - tig0020683:59552-59571 None:intergenic 30.0%
CAAAACGCGAATTGAAAAAA+TGG - tig0020683:59568-59587 None:intergenic 30.0%
!! TTCGTGATAATGTATTTTGC+TGG + tig0020683:59743-59762 Msa1384870:intron 30.0%
! ATAGAGAAGATATTGGTTGT+AGG + tig0020683:59832-59851 Msa1384870:intron 30.0%
! TAGAGAAGATATTGGTTGTA+GGG + tig0020683:59833-59852 Msa1384870:intron 30.0%
CAATAACCTAAAAGCTTAGT+AGG - tig0020683:60129-60148 None:intergenic 30.0%
AATCTAATGTAGGTACAAGT+CGG + tig0020683:60675-60694 Msa1384870:intron 30.0%
AGTATCACCAATGTATTTAC+GGG - tig0020683:60785-60804 None:intergenic 30.0%
CAGTATCACCAATGTATTTA+CGG - tig0020683:60786-60805 None:intergenic 30.0%
AGTTCAGTACTTCTTCATTT+GGG - tig0020683:61061-61080 None:intergenic 30.0%
AAGTTCAGTACTTCTTCATT+TGG - tig0020683:61062-61081 None:intergenic 30.0%
! TTCAGTTTTCTTTTCCTTCT+GGG - tig0020683:61178-61197 None:intergenic 30.0%
! TTTCAGTTTTCTTTTCCTTC+TGG - tig0020683:61179-61198 None:intergenic 30.0%
GAAAACTGAAAGTAACATGA+TGG + tig0020683:61188-61207 Msa1384870:CDS 30.0%
AAGAATCCATGATTTCAGTT+AGG - tig0020683:61348-61367 None:intergenic 30.0%
TAAGTCAGATATCACATAAG+TGG - tig0020683:61452-61471 None:intergenic 30.0%
! CTGTAGTTCTGTATATTAAC+AGG + tig0020683:61472-61491 Msa1384870:intron 30.0%
!! CAATCTTTCCATTTTTCTGA+AGG - tig0020683:61611-61630 None:intergenic 30.0%
CTTCAGAAAAATGGAAAGAT+TGG + tig0020683:61609-61628 Msa1384870:CDS 30.0%
TAACAGTTGTAGAAGAATCT+GGG - tig0020683:61975-61994 None:intergenic 30.0%
TTAACAGTTGTAGAAGAATC+TGG - tig0020683:61976-61995 None:intergenic 30.0%
!! CAACTTGTTGATAATGTTTC+AGG + tig0020683:62014-62033 Msa1384870:CDS 30.0%
AAGGAAAAAATGGGAATAAG+TGG - tig0020683:62064-62083 None:intergenic 30.0%
AGATCATGAATATAAGAAGG+TGG - tig0020683:62090-62109 None:intergenic 30.0%
GATGTATCAAACACTGTATA+TGG + tig0020683:62180-62199 Msa1384870:CDS 30.0%
GAAGAAAACTTGTGAAGAAA+AGG - tig0020683:62267-62286 None:intergenic 30.0%
TGGTTGTATTATTGTCTTGT+TGG + tig0020683:62483-62502 Msa1384870:three_prime_UTR 30.0%
! GTATTATTGTCTTGTTGGTT+AGG + tig0020683:62488-62507 Msa1384870:three_prime_UTR 30.0%
!!! TACCAGTTCTTTTTTAGTAC+AGG + tig0020683:62513-62532 Msa1384870:three_prime_UTR 30.0%
!!! CTTTTTTAGTACAGGTCTTT+AGG + tig0020683:62521-62540 Msa1384870:three_prime_UTR 30.0%
CTAGCTAACATGTAAAATAC+CGG - tig0020683:62556-62575 None:intergenic 30.0%
AAGTACAAGTTCTCATTGAA+TGG - tig0020683:62581-62600 None:intergenic 30.0%
!!! ACTCTTGCCTTTTAGTTTAA+TGG + tig0020683:62708-62727 Msa1384870:three_prime_UTR 30.0%
TAGAATTCAACATCAGTGAA+GGG - tig0020683:62799-62818 None:intergenic 30.0%
TTAGAATTCAACATCAGTGA+AGG - tig0020683:62800-62819 None:intergenic 30.0%
GAATATTGTAGTATATGCCA+AGG - tig0020683:62836-62855 None:intergenic 30.0%
!! AGGTGTTACTGTTGTGTTAA+CGG - tig0020683:59306-59325 None:intergenic 35.0%
TGACTATGATTTGAGCAATG+TGG + tig0020683:59369-59388 Msa1384870:five_prime_UTR 35.0%
GACTATGATTTGAGCAATGT+GGG + tig0020683:59370-59389 Msa1384870:five_prime_UTR 35.0%
ACTATGATTTGAGCAATGTG+GGG + tig0020683:59371-59390 Msa1384870:five_prime_UTR 35.0%
GAAACAAAGTACGAAGAAAC+TGG - tig0020683:59618-59637 None:intergenic 35.0%
TAGTGAAGTGAAATGCGATA+AGG + tig0020683:59805-59824 Msa1384870:intron 35.0%
AGGCAAGCAAGTAAAAACAT+TGG - tig0020683:59929-59948 None:intergenic 35.0%
! TTTGTTTAACTTAGAGCTGC+AGG + tig0020683:60223-60242 Msa1384870:five_prime_UTR 35.0%
! TTGTTTAACTTAGAGCTGCA+GGG + tig0020683:60224-60243 Msa1384870:five_prime_UTR 35.0%
! GTTCTTTTCCTTCTGTTACT+AGG + tig0020683:60299-60318 Msa1384870:CDS 35.0%
! TTTTCCTTCTGTTACTAGGA+AGG + tig0020683:60303-60322 Msa1384870:CDS 35.0%
! CGTAAATACATTGGTGATAC+TGG + tig0020683:60784-60803 Msa1384870:CDS 35.0%
AATACTCCATAATTCCGTCA+GGG - tig0020683:60888-60907 None:intergenic 35.0%
AACTGAAAGTAACATGATGG+AGG + tig0020683:61191-61210 Msa1384870:CDS 35.0%
AATCCATGATTTCAGTTAGG+CGG - tig0020683:61345-61364 None:intergenic 35.0%
! GGATTCTTTGAAGAATTTGC+AGG + tig0020683:61360-61379 Msa1384870:CDS 35.0%
GTATATTAACAGGGCAAGTA+TGG + tig0020683:61482-61501 Msa1384870:intron 35.0%
TTAGTCCTCCTTCAGAAAAA+TGG + tig0020683:61600-61619 Msa1384870:CDS 35.0%
!! TCTTTCCATTTTTCTGAAGG+AGG - tig0020683:61608-61627 None:intergenic 35.0%
TCTTCAAGAAAACACTCTTG+TGG - tig0020683:61713-61732 None:intergenic 35.0%
TTAGTCAGTTCTTCATTGAG+TGG - tig0020683:61761-61780 None:intergenic 35.0%
AAGAACTGACTAACAAGAAG+AGG + tig0020683:61768-61787 Msa1384870:CDS 35.0%
AACAGTTGTAGAAGAATCTG+GGG - tig0020683:61974-61993 None:intergenic 35.0%
AGGTGGTAGAAGGAAAAAAT+GGG - tig0020683:62073-62092 None:intergenic 35.0%
AAGGTGGTAGAAGGAAAAAA+TGG - tig0020683:62074-62093 None:intergenic 35.0%
GAATATAAGAAGGTGGTAGA+AGG - tig0020683:62083-62102 None:intergenic 35.0%
TTTCTTGCAGGAGATGTTTA+TGG + tig0020683:62116-62135 Msa1384870:intron 35.0%
ATGAAGTAGACATCTCTTTG+AGG + tig0020683:62213-62232 Msa1384870:exon 35.0%
GGTGGTTATAATCCTATTCT+AGG - tig0020683:62246-62265 None:intergenic 35.0%
GAAAACTTGTGAAGAAAAGG+TGG - tig0020683:62264-62283 None:intergenic 35.0%
! AGTTTGATCTAATTTGAGGC+AGG + tig0020683:62441-62460 Msa1384870:three_prime_UTR 35.0%
GTCTTCAACAGGAATGAAAT+TGG + tig0020683:62463-62482 Msa1384870:three_prime_UTR 35.0%
GACCTGTACTAAAAAAGAAC+TGG - tig0020683:62518-62537 None:intergenic 35.0%
TTTAGTACAGGTCTTTAGGT+AGG + tig0020683:62525-62544 Msa1384870:three_prime_UTR 35.0%
TCATCTTGTAGATGTCCTAT+AGG + tig0020683:62637-62656 Msa1384870:three_prime_UTR 35.0%
!!! CTTGCCTTTTAGTTTAATGG+TGG + tig0020683:62711-62730 Msa1384870:three_prime_UTR 35.0%
ATTGTAGTATATGCCAAGGT+AGG - tig0020683:62832-62851 None:intergenic 35.0%
!!! CTGTTTTTGCATGTTAAGGT+AGG - tig0020683:62901-62920 None:intergenic 35.0%
! TTTGAGCAATGTGGGGTTTT+TGG + tig0020683:59378-59397 Msa1384870:five_prime_UTR 40.0%
! AATCAACCTTGGTGATCCAA+TGG + tig0020683:60099-60118 Msa1384870:intron 40.0%
AAGCTTAGTAGGTGATCCAT+TGG - tig0020683:60118-60137 None:intergenic 40.0%
! GGATCACCTACTAAGCTTTT+AGG + tig0020683:60120-60139 Msa1384870:intron 40.0%
TCTTCCTTCCTAGTAACAGA+AGG - tig0020683:60310-60329 None:intergenic 40.0%
TTCTGTTACTAGGAAGGAAG+AGG + tig0020683:60309-60328 Msa1384870:CDS 40.0%
! CGCTTCCTTTTCTTACTATC+TGG - tig0020683:60388-60407 None:intergenic 40.0%
ACCTCAATAAGCTGACCATA+AGG - tig0020683:60481-60500 None:intergenic 40.0%
TCAGCTTATTGAGGTGAAAG+AGG + tig0020683:60486-60505 Msa1384870:CDS 40.0%
! GAGAAAGAAGCATGACAGTA+AGG + tig0020683:60543-60562 Msa1384870:CDS 40.0%
AGCATGACAGTAAGGATAGA+TGG + tig0020683:60551-60570 Msa1384870:CDS 40.0%
TTAGTACAGGTCGGGTTATT+GGG - tig0020683:60753-60772 None:intergenic 40.0%
CAATACTCCATAATTCCGTC+AGG - tig0020683:60889-60908 None:intergenic 40.0%
CTGACGGAATTATGGAGTAT+TGG + tig0020683:60887-60906 Msa1384870:CDS 40.0%
!! CGGAATTATGGAGTATTGGT+TGG + tig0020683:60891-60910 Msa1384870:CDS 40.0%
!! TTATGGAGTATTGGTTGGAG+AGG + tig0020683:60896-60915 Msa1384870:CDS 40.0%
!! TATGGAGTATTGGTTGGAGA+GGG + tig0020683:60897-60916 Msa1384870:CDS 40.0%
AAGAATCAGCATCCTGACAA+GGG - tig0020683:61005-61024 None:intergenic 40.0%
TTTGGATAGCAGAGATATGC+AGG + tig0020683:61143-61162 Msa1384870:intron 40.0%
CTTGCAAGGAACTTATGAAG+TGG + tig0020683:61302-61321 Msa1384870:CDS 40.0%
TGAAGTGGAGCAACATCTTA+TGG + tig0020683:61526-61545 Msa1384870:CDS 40.0%
! TTCTGAAGGAGGACTAAAAG+TGG - tig0020683:61597-61616 None:intergenic 40.0%
TTTCTTGAAGATCCCTACTC+AGG + tig0020683:61722-61741 Msa1384870:CDS 40.0%
TCTTCATTGAGTGGCTGAAT+TGG - tig0020683:61752-61771 None:intergenic 40.0%
!! AGACATCTCTTTGAGGTATC+AGG + tig0020683:62220-62239 Msa1384870:exon 40.0%
TTTGCCAACCACTAAGTTCA+TGG + tig0020683:62350-62369 Msa1384870:three_prime_UTR 40.0%
TCTTCCATGAACTTAGTGGT+TGG - tig0020683:62357-62376 None:intergenic 40.0%
AACCACTAAGTTCATGGAAG+AGG + tig0020683:62356-62375 Msa1384870:three_prime_UTR 40.0%
AACCTCTTCCATGAACTTAG+TGG - tig0020683:62361-62380 None:intergenic 40.0%
GGCATAAGAACAACTTAGTC+GGG - tig0020683:62682-62701 None:intergenic 40.0%
GGGCATAAGAACAACTTAGT+CGG - tig0020683:62683-62702 None:intergenic 40.0%
!!! GCCTTTTAGTTTAATGGTGG+CGG + tig0020683:62714-62733 Msa1384870:three_prime_UTR 40.0%
!!! CCTTTTAGTTTAATGGTGGC+GGG + tig0020683:62715-62734 Msa1384870:three_prime_UTR 40.0%
TCTTTCACTACTTTCTCGCG+AGG - tig0020683:59326-59345 None:intergenic 45.0%
! GTTGCTAATGCAGCTGACTT+TGG + tig0020683:60169-60188 Msa1384870:intron 45.0%
TGCAAGTGCAAGTGCTTTGT+CGG - tig0020683:60199-60218 None:intergenic 45.0%
TTAACTTAGAGCTGCAGGGA+TGG + tig0020683:60228-60247 Msa1384870:exon 45.0%
CATCGTCAACAGGCATTCAT+TGG + tig0020683:60265-60284 Msa1384870:CDS 45.0%
GTCAACAGGCATTCATTGGT+TGG + tig0020683:60269-60288 Msa1384870:CDS 45.0%
TACTAGGAAGGAAGAGGACT+CGG + tig0020683:60315-60334 Msa1384870:CDS 45.0%
TCACCTCTCTAAGCTGACTA+AGG - tig0020683:60417-60436 None:intergenic 45.0%
GTCTTGTGAGAAGCTTAGAG+AGG + tig0020683:60444-60463 Msa1384870:CDS 45.0%
GAAGCTTAGAGAGGTGAAAG+AGG + tig0020683:60453-60472 Msa1384870:CDS 45.0%
GCCTTATGGTCAGCTTATTG+AGG + tig0020683:60477-60496 Msa1384870:CDS 45.0%
! AGGTGAAAGAGGAGTATGCT+GGG + tig0020683:60497-60516 Msa1384870:CDS 45.0%
CTTAGTACAGGTCGGGTTAT+TGG - tig0020683:60754-60773 None:intergenic 45.0%
AGCTGATCTTAGTACAGGTC+GGG - tig0020683:60761-60780 None:intergenic 45.0%
CAGCTGATCTTAGTACAGGT+CGG - tig0020683:60762-60781 None:intergenic 45.0%
TCAGCTGCCCGTAAATACAT+TGG + tig0020683:60775-60794 Msa1384870:CDS 45.0%
GGTCAATGTGCTTCAGTAAG+TGG - tig0020683:60819-60838 None:intergenic 45.0%
GAAGCACATTGACCGTAAAG+TGG + tig0020683:60825-60844 Msa1384870:CDS 45.0%
GTTCAACCCTGACGGAATTA+TGG + tig0020683:60879-60898 Msa1384870:CDS 45.0%
! TGGATGGTGGTATCCAATAG+GGG - tig0020683:60963-60982 None:intergenic 45.0%
! GTGGATGGTGGTATCCAATA+GGG - tig0020683:60964-60983 None:intergenic 45.0%
! AGTGGATGGTGGTATCCAAT+AGG - tig0020683:60965-60984 None:intergenic 45.0%
GATACCACCATCCACTGTTA+GGG + tig0020683:60969-60988 Msa1384870:CDS 45.0%
AGAATCAGCATCCTGACAAG+GGG - tig0020683:61004-61023 None:intergenic 45.0%
GAAGAATCAGCATCCTGACA+AGG - tig0020683:61006-61025 None:intergenic 45.0%
TCAATGGCAGAAGACTTGCA+AGG + tig0020683:61288-61307 Msa1384870:intron 45.0%
CAACCGCCTAACTGAAATCA+TGG + tig0020683:61339-61358 Msa1384870:CDS 45.0%
AGTATGGTGAGTTCGCGATA+TGG + tig0020683:61498-61517 Msa1384870:CDS 45.0%
CGCGATATGGAAAACTGAAG+TGG + tig0020683:61511-61530 Msa1384870:CDS 45.0%
CTAAAAGTGGTGCACTCTCT+TGG - tig0020683:61584-61603 None:intergenic 45.0%
CACTAACCCAGACAATACTC+AGG + tig0020683:61640-61659 Msa1384870:CDS 45.0%
! CGTCATCCTGAGTATTGTCT+GGG - tig0020683:61649-61668 None:intergenic 45.0%
CCAGACAATACTCAGGATGA+CGG + tig0020683:61647-61666 Msa1384870:CDS 45.0%
!! CAATACTCAGGATGACGGAT+TGG + tig0020683:61652-61671 Msa1384870:CDS 45.0%
!! ACGGATTGGCAACTTGGATA+GGG + tig0020683:61666-61685 Msa1384870:CDS 45.0%
TGAATTGGCATGCCTGAGTA+GGG - tig0020683:61737-61756 None:intergenic 45.0%
AGATGTGCGTGCATGTTTGA+GGG - tig0020683:61826-61845 None:intergenic 45.0%
!! TCTTGGTTTTTCCACCTCCA+AGG - tig0020683:61849-61868 None:intergenic 45.0%
TGGAGGTGGAAAAACCAAGA+AGG + tig0020683:61849-61868 Msa1384870:intron 45.0%
GGTTGATCCTCTTGCATTGT+GGG - tig0020683:61943-61962 None:intergenic 45.0%
! AGGTTGATCCTCTTGCATTG+TGG - tig0020683:61944-61963 None:intergenic 45.0%
! GAAGAATCTGGGGTGACATT+AGG - tig0020683:61964-61983 None:intergenic 45.0%
! TGAGGTATCAGGCCTAGAAT+AGG + tig0020683:62231-62250 Msa1384870:three_prime_UTR 45.0%
CAATTTGCAGCTCAACAAGC+AGG - tig0020683:62392-62411 None:intergenic 45.0%
! ATTTGAGGCAGGTCTTCAAC+AGG + tig0020683:62452-62471 Msa1384870:three_prime_UTR 45.0%
CTAAAAGGCAAGAGTAGCGA+GGG - tig0020683:62703-62722 None:intergenic 45.0%
ACTAAAAGGCAAGAGTAGCG+AGG - tig0020683:62704-62723 None:intergenic 45.0%
CCCGCCACCATTAAACTAAA+AGG - tig0020683:62718-62737 None:intergenic 45.0%
!! TTTAGTTTAATGGTGGCGGG+TGG + tig0020683:62718-62737 Msa1384870:three_prime_UTR 45.0%
!! TTAGTTTAATGGTGGCGGGT+GGG + tig0020683:62719-62738 Msa1384870:three_prime_UTR 45.0%
!!! AATATCAAAATAATATTTTA+TGG + tig0020683:61090-61109 Msa1384870:intron 5.0%
!! GAGCAATGTGGGGTTTTTGG+CGG + tig0020683:59381-59400 Msa1384870:five_prime_UTR 50.0%
!!! ATGTGGGGTTTTTGGCGGTT+AGG + tig0020683:59386-59405 Msa1384870:five_prime_UTR 50.0%
!!! TGTGGGGTTTTTGGCGGTTA+GGG + tig0020683:59387-59406 Msa1384870:five_prime_UTR 50.0%
ACCAACTCGCACTGTGTTGT+CGG + tig0020683:59480-59499 Msa1384870:five_prime_UTR 50.0%
TCTCTCTTCTTCGCGCTTCT+TGG + tig0020683:59517-59536 Msa1384870:five_prime_UTR 50.0%
TCTTCTTCGCGCTTCTTGGT+AGG + tig0020683:59521-59540 Msa1384870:intron 50.0%
CTTCTTCGCGCTTCTTGGTA+GGG + tig0020683:59522-59541 Msa1384870:intron 50.0%
GGTGATCCATTGGATCACCA+AGG - tig0020683:60108-60127 None:intergenic 50.0%
TTAGAGCTGCAGGGATGGAT+AGG + tig0020683:60233-60252 Msa1384870:exon 50.0%
CTCTAAGCTGACTAAGGCTG+AGG - tig0020683:60411-60430 None:intergenic 50.0%
CAGCCTTAGTCAGCTTAGAG+AGG + tig0020683:60411-60430 Msa1384870:CDS 50.0%
GAGGTGAAAGAGGAGCCTTA+TGG + tig0020683:60463-60482 Msa1384870:CDS 50.0%
! GAGGTGAAAGAGGAGTATGC+TGG + tig0020683:60496-60515 Msa1384870:CDS 50.0%
AGGATAGATGGTCAAGCGAG+AGG + tig0020683:60563-60582 Msa1384870:CDS 50.0%
AGTCGGCTGAACAAAGCATG+TGG + tig0020683:60692-60711 Msa1384870:CDS 50.0%
GTCGGCTGAACAAAGCATGT+GGG + tig0020683:60693-60712 Msa1384870:CDS 50.0%
ATTGACCGTAAAGTGGCACC+TGG + tig0020683:60832-60851 Msa1384870:CDS 50.0%
CGTCAGGGTTGAACCATCTT+CGG - tig0020683:60873-60892 None:intergenic 50.0%
CGAAGATGGTTCAACCCTGA+CGG + tig0020683:60871-60890 Msa1384870:CDS 50.0%
GGATACCACCATCCACTGTT+AGG + tig0020683:60968-60987 Msa1384870:CDS 50.0%
! CCGTCATCCTGAGTATTGTC+TGG - tig0020683:61650-61669 None:intergenic 50.0%
!! AGGATGACGGATTGGCAACT+TGG + tig0020683:61660-61679 Msa1384870:CDS 50.0%
!! GACGGATTGGCAACTTGGAT+AGG + tig0020683:61665-61684 Msa1384870:CDS 50.0%
CTGAATTGGCATGCCTGAGT+AGG - tig0020683:61738-61757 None:intergenic 50.0%
TGCGTGCATGTTTGAGGGTT+TGG - tig0020683:61821-61840 None:intergenic 50.0%
GAGATGTGCGTGCATGTTTG+AGG - tig0020683:61827-61846 None:intergenic 50.0%
AACATGCACGCACATCTCCT+TGG + tig0020683:61829-61848 Msa1384870:intron 50.0%
GCTGATACCCACAATGCAAG+AGG + tig0020683:61933-61952 Msa1384870:CDS 50.0%
AAAGATGGAGCAGCAGCTGT+TGG + tig0020683:62158-62177 Msa1384870:CDS 50.0%
GGTCTTTAGGTAGGCTTTGC+CGG + tig0020683:62534-62553 Msa1384870:three_prime_UTR 50.0%
!! TAGTTTAATGGTGGCGGGTG+GGG + tig0020683:62720-62739 Msa1384870:three_prime_UTR 50.0%
GTGGGGTTATGTGTCGCATA+TGG + tig0020683:62737-62756 Msa1384870:three_prime_UTR 50.0%
AGCTGCAGGGATGGATAGGT+GGG + tig0020683:60237-60256 Msa1384870:exon 55.0%
! GTGGGGTGTTCATCGTCAAC+AGG + tig0020683:60255-60274 Msa1384870:CDS 55.0%
GGCTGAACAAAGCATGTGGG+AGG + tig0020683:60696-60715 Msa1384870:CDS 55.0%
!! AAGCATGTGGGAGGTGCTGA+AGG + tig0020683:60705-60724 Msa1384870:CDS 55.0%
CGGGCAGCTGATCTTAGTAC+AGG - tig0020683:60766-60785 None:intergenic 55.0%
ACCGTAAAGTGGCACCTGGA+GGG + tig0020683:60836-60855 Msa1384870:CDS 55.0%
!! TCCCTCCAGGTGCCACTTTA+CGG - tig0020683:60840-60859 None:intergenic 55.0%
! GGACTGATCGGTTCCGAAGA+TGG + tig0020683:60857-60876 Msa1384870:CDS 55.0%
TTGGTTGGAGAGGGCTGACT+TGG + tig0020683:60906-60925 Msa1384870:CDS 55.0%
!! CTGGGGTTGATGACCCCTAT+TGG + tig0020683:60947-60966 Msa1384870:CDS 55.0%
ATGGCCCTAACAGTGGATGG+TGG - tig0020683:60976-60995 None:intergenic 55.0%
ATGCACGCACATCTCCTTGG+AGG + tig0020683:61832-61851 Msa1384870:intron 55.0%
TGCAGCTCAACAAGCAGGTG+AGG - tig0020683:62387-62406 None:intergenic 55.0%
GCCGACAACACAGTGCGAGT+TGG - tig0020683:59484-59503 None:intergenic 60.0%
GAGCTGCAGGGATGGATAGG+TGG + tig0020683:60236-60255 Msa1384870:exon 60.0%
GCTGCAGGGATGGATAGGTG+GGG + tig0020683:60238-60257 Msa1384870:exon 60.0%
!! TGGGAGGTGCTGAAGGCAGA+GGG + tig0020683:60712-60731 Msa1384870:CDS 60.0%
GACCGTAAAGTGGCACCTGG+AGG + tig0020683:60835-60854 Msa1384870:CDS 60.0%
TGGCACCTGGAGGGACTGAT+CGG + tig0020683:60845-60864 Msa1384870:CDS 60.0%
! TGACTTGGATGACGTCCGCG+AGG + tig0020683:60921-60940 Msa1384870:CDS 60.0%
CGGATGGCCCTAACAGTGGA+TGG - tig0020683:60979-60998 None:intergenic 60.0%
! ATCCTGACAAGGGGCACGGA+TGG - tig0020683:60995-61014 None:intergenic 60.0%
CAGCATCCTGACAAGGGGCA+CGG - tig0020683:60999-61018 None:intergenic 60.0%
GCAGGAGCTCATTGCCCAGA+AGG + tig0020683:61161-61180 Msa1384870:CDS 60.0%
CACGCACATCTCCTTGGAGG+TGG + tig0020683:61835-61854 Msa1384870:intron 60.0%
!! GTGGGAGGTGCTGAAGGCAG+AGG + tig0020683:60711-60730 Msa1384870:CDS 65.0%
!! GGGAGGTGCTGAAGGCAGAG+GGG + tig0020683:60713-60732 Msa1384870:CDS 65.0%
!! GGAGGTGCTGAAGGCAGAGG+GGG + tig0020683:60714-60733 Msa1384870:CDS 65.0%
CGGAACCGATCAGTCCCTCC+AGG - tig0020683:60853-60872 None:intergenic 65.0%
CTTGGATGACGTCCGCGAGG+AGG + tig0020683:60924-60943 Msa1384870:CDS 65.0%
ATGACGTCCGCGAGGAGGCT+GGG + tig0020683:60929-60948 Msa1384870:CDS 65.0%
CATCAACCCCAGCCTCCTCG+CGG - tig0020683:60939-60958 None:intergenic 65.0%
GGCACGGATGGCCCTAACAG+TGG - tig0020683:60983-61002 None:intergenic 65.0%
GATGACGTCCGCGAGGAGGC+TGG + tig0020683:60928-60947 Msa1384870:CDS 70.0%
TGACGTCCGCGAGGAGGCTG+GGG + tig0020683:60930-60949 Msa1384870:CDS 70.0%
GGCCATCCGTGCCCCTTGTC+AGG + tig0020683:60990-61009 Msa1384870:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0020683 gene 59301 62934 59301 ID=Msa1384870;Name=Msa1384870
tig0020683 mRNA 59301 62934 59301 ID=Msa1384870-mRNA-1;Parent=Msa1384870;Name=Msa1384870-mRNA-1;_AED=0.07;_eAED=0.07;_QI=303|1|1|1|0.85|0.75|8|713|456
tig0020683 exon 59301 59538 59301 ID=Msa1384870-mRNA-1:exon:9301;Parent=Msa1384870-mRNA-1
tig0020683 exon 60182 60584 60182 ID=Msa1384870-mRNA-1:exon:9302;Parent=Msa1384870-mRNA-1
tig0020683 exon 60687 61070 60687 ID=Msa1384870-mRNA-1:exon:9303;Parent=Msa1384870-mRNA-1
tig0020683 exon 61155 61212 61155 ID=Msa1384870-mRNA-1:exon:9304;Parent=Msa1384870-mRNA-1
tig0020683 exon 61298 61381 61298 ID=Msa1384870-mRNA-1:exon:9305;Parent=Msa1384870-mRNA-1
tig0020683 exon 61494 61789 61494 ID=Msa1384870-mRNA-1:exon:9306;Parent=Msa1384870-mRNA-1
tig0020683 exon 61921 62035 61921 ID=Msa1384870-mRNA-1:exon:9307;Parent=Msa1384870-mRNA-1
tig0020683 exon 62126 62934 62126 ID=Msa1384870-mRNA-1:exon:9308;Parent=Msa1384870-mRNA-1
tig0020683 five_prime_UTR 59301 59538 59301 ID=Msa1384870-mRNA-1:five_prime_utr;Parent=Msa1384870-mRNA-1
tig0020683 five_prime_UTR 60182 60246 60182 ID=Msa1384870-mRNA-1:five_prime_utr;Parent=Msa1384870-mRNA-1
tig0020683 CDS 60247 60584 60247 ID=Msa1384870-mRNA-1:cds;Parent=Msa1384870-mRNA-1
tig0020683 CDS 60687 61070 60687 ID=Msa1384870-mRNA-1:cds;Parent=Msa1384870-mRNA-1
tig0020683 CDS 61155 61212 61155 ID=Msa1384870-mRNA-1:cds;Parent=Msa1384870-mRNA-1
tig0020683 CDS 61298 61381 61298 ID=Msa1384870-mRNA-1:cds;Parent=Msa1384870-mRNA-1
tig0020683 CDS 61494 61789 61494 ID=Msa1384870-mRNA-1:cds;Parent=Msa1384870-mRNA-1
tig0020683 CDS 61921 62035 61921 ID=Msa1384870-mRNA-1:cds;Parent=Msa1384870-mRNA-1
tig0020683 CDS 62126 62221 62126 ID=Msa1384870-mRNA-1:cds;Parent=Msa1384870-mRNA-1
tig0020683 three_prime_UTR 62222 62934 62222 ID=Msa1384870-mRNA-1:three_prime_utr;Parent=Msa1384870-mRNA-1
Gene Sequence

>Msa1384870

ATGGATAGGTGGGGTGTTCATCGTCAACAGGCATTCATTGGTTGGCGTGCAAGTTCTTTTCCTTCTGTTACTAGGAAGGAAGAGGACTCGGACAACGACAGAGAAGAAGTAAATGTTAAGAATGAACCAATATATTTTCCAGATAGTAAGAAAAGGAAGCGCCTCAGCCTTAGTCAGCTTAGAGAGGTGAAAGTAGAGTCTTGTGAGAAGCTTAGAGAGGTGAAAGAGGAGCCTTATGGTCAGCTTATTGAGGTGAAAGAGGAGTATGCTGGGAATCAAAGCAGTAGCAAGAATAAGAGAAAGAAGCATGACAGTAAGGATAGATGGTCAAGCGAGAGGTACAAGTCGGCTGAACAAAGCATGTGGGAGGTGCTGAAGGCAGAGGGGGCGACTTTTGAACACCCAATAACCCGACCTGTACTAAGATCAGCTGCCCGTAAATACATTGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTGACCGTAAAGTGGCACCTGGAGGGACTGATCGGTTCCGAAGATGGTTCAACCCTGACGGAATTATGGAGTATTGGTTGGAGAGGGCTGACTTGGATGACGTCCGCGAGGAGGCTGGGGTTGATGACCCCTATTGGATACCACCATCCACTGTTAGGGCCATCCGTGCCCCTTGTCAGGATGCTGATTCTTCTGCTGAATTGAAACTGCTTAAAATAGAAATGGCCCAAATGAAGAAAGATATGCAGGAGCTCATTGCCCAGAAGGAAAAGAAAACTGAAAGTAACATGATGGAGAAGACTTGCAAGGAACTTATGAAGTGGAAAGCTAAAACTGACAACCGCCTAACTGAAATCATGGATTCTTTGAAGAATTTGCAGGGCAAGTATGGTGAGTTCGCGATATGGAAAACTGAAGTGGAGCAACATCTTATGGATATAACAAATAAATTGAATGCTCTTCAAGCACCAAGAGAGTGCACCACTTTTAGTCCTCCTTCAGAAAAATGGAAAGATTGGTTAGAAAACACTAACCCAGACAATACTCAGGATGACGGATTGGCAACTTGGATAGGGAGTTCAGAACTATTTAATGTTCCACAAGAGTGTTTTCTTGAAGATCCCTACTCAGGCATGCCAATTCAGCCACTCAATGAAGAACTGACTAACAAGAAGAGTCATGTTGAGGAGCTGATACCCACAATGCAAGAGGATCAACCTAATGTCACCCCAGATTCTTCTACAACTGTTAATTCAAAGGCAGACGTTGACAACTTGTTGATAATGTTTCAGGAGATGTTTATGGATTTATTCAAATGGAAAGAAAAGATGGAGCAGCAGCTGTTGGATGTATCAAACACTGTATATGGCATGCTAGCAATGAAGTAG

Protein sequence

>Msa1384870

MDRWGVHRQQAFIGWRASSFPSVTRKEEDSDNDREEVNVKNEPIYFPDSKKRKRLSLSQLREVKVESCEKLREVKEEPYGQLIEVKEEYAGNQSSSKNKRKKHDSKDRWSSERYKSAEQSMWEVLKAEGATFEHPITRPVLRSAARKYIGDTGLLDHLLKHIDRKVAPGGTDRFRRWFNPDGIMEYWLERADLDDVREEAGVDDPYWIPPSTVRAIRAPCQDADSSAELKLLKIEMAQMKKDMQELIAQKEKKTESNMMEKTCKELMKWKAKTDNRLTEIMDSLKNLQGKYGEFAIWKTEVEQHLMDITNKLNALQAPRECTTFSPPSEKWKDWLENTNPDNTQDDGLATWIGSSELFNVPQECFLEDPYSGMPIQPLNEELTNKKSHVEELIPTMQEDQPNVTPDSSTTVNSKADVDNLLIMFQEMFMDLFKWKEKMEQQLLDVSNTVYGMLAMK*