Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235410 | XP_003627474.1 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235410 | sp|Q84WU0|OFUT5_ARATH | 60.633 | 569 | 187 | 10 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235410 | G7L9X3 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626450 | Msa1235410 | 0.817306 | 3.531681e-52 | -8.615850e-47 |
| Msa0626490 | Msa1235410 | 0.812566 | 3.974294e-51 | -8.615850e-47 |
| Msa0644410 | Msa1235410 | 0.828452 | 8.920487e-55 | -8.615850e-47 |
| Msa0664600 | Msa1235410 | 0.816550 | 5.219642e-52 | -8.615850e-47 |
| Msa0675330 | Msa1235410 | 0.811840 | 5.725536e-51 | -8.615850e-47 |
| Msa0738700 | Msa1235410 | 0.811456 | 6.939676e-51 | -8.615850e-47 |
| Msa0783530 | Msa1235410 | 0.807394 | 5.163535e-50 | -8.615850e-47 |
| Msa0158860 | Msa1235410 | 0.800288 | 1.546003e-48 | -8.615850e-47 |
| Msa0174450 | Msa1235410 | 0.800667 | 1.294327e-48 | -8.615850e-47 |
| Msa1235410 | Msa1415540 | 0.827874 | 1.229417e-54 | -8.615850e-47 |
| Msa1235410 | Msa1440960 | 0.825500 | 4.532347e-54 | -8.615850e-47 |
| Msa0380620 | Msa1235410 | 0.803579 | 3.259257e-49 | -8.615850e-47 |
| Msa0472950 | Msa1235410 | 0.829677 | 4.502051e-55 | -8.615850e-47 |
| Msa1029800 | Msa1235410 | 0.800686 | 1.282893e-48 | -8.615850e-47 |
| Msa0528570 | Msa1235410 | 0.836029 | 1.188942e-56 | -8.615850e-47 |
| Msa0548470 | Msa1235410 | 0.828835 | 7.207587e-55 | -8.615850e-47 |
| Msa0557370 | Msa1235410 | 0.803219 | 3.869783e-49 | -8.615850e-47 |
| Msa0557460 | Msa1235410 | 0.818166 | 2.258882e-52 | -8.615850e-47 |
| Msa0571290 | Msa1235410 | 0.816151 | 6.411193e-52 | -8.615850e-47 |
| Msa0585020 | Msa1235410 | 0.812979 | 3.227150e-51 | -8.615850e-47 |
| Msa0597270 | Msa1235410 | 0.821704 | 3.505270e-53 | -8.615850e-47 |
| Msa0859290 | Msa1235410 | 0.813517 | 2.458811e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235410 | MtrunA17_Chr8g0345431 | 99.077 | 542 | 5 | 0 | 1 | 542 | 1 | 542 | 0.0 | 1117 |
| Msa1235410 | MtrunA17_Chr2g0277611 | 80.952 | 105 | 16 | 2 | 261 | 364 | 3 | 104 | 1.33e-46 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1235410 | AT1G17270.2 | 60.633 | 569 | 187 | 10 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Msa1235410 | AT1G17270.1 | 60.633 | 569 | 187 | 10 | 3 | 542 | 4 | 564 | 0.0 | 688 |
| Msa1235410 | AT5G50420.1 | 60.457 | 569 | 190 | 9 | 3 | 542 | 4 | 566 | 0.0 | 672 |
| Msa1235410 | AT1G53770.1 | 59.253 | 562 | 188 | 10 | 6 | 542 | 18 | 563 | 0.0 | 660 |
| Msa1235410 | AT1G53770.2 | 55.333 | 600 | 189 | 11 | 6 | 542 | 18 | 601 | 0.0 | 638 |
Find 160 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCATATTAATAAATGTTT+AGG | 0.213341 | 8_2:+13415032 | Msa1235410:CDS |
| TTAGTTGCTATTTGTGTTTC+CGG | 0.216242 | 8_2:+13414888 | Msa1235410:CDS |
| TTTGCCTCAACCTTGTTATT+TGG | 0.238205 | 8_2:+13415139 | Msa1235410:CDS |
| GAATGTAGAGGGAGGTGTTC+GGG | 0.272733 | 8_2:-13414367 | None:intergenic |
| ATTGATCCTGAATTCAATTT+CGG | 0.284521 | 8_2:+13414762 | Msa1235410:CDS |
| GAAGTTGGATGGGTTGGGTT+TGG | 0.289769 | 8_2:+13415178 | Msa1235410:CDS |
| ATCATATTAATAAATGTTTA+GGG | 0.291964 | 8_2:+13415033 | Msa1235410:CDS |
| GGCGATTCTTAATAGGGTTT+TGG | 0.296947 | 8_2:+13414959 | Msa1235410:CDS |
| AAGTTGGATGGGTTGGGTTT+GGG | 0.298746 | 8_2:+13415179 | Msa1235410:CDS |
| TATTGAATGGAATCCTAAAA+AGG | 0.306443 | 8_2:+13414857 | Msa1235410:CDS |
| CGAGTAAACCTAAGGCTGTT+TGG | 0.319602 | 8_2:+13415204 | Msa1235410:CDS |
| GAATTTCCGAAATTGAATTC+AGG | 0.320671 | 8_2:-13414768 | None:intergenic |
| TTGTGGAGGGTTGGTGGATG+AGG | 0.325976 | 8_2:-13414341 | None:intergenic |
| TTTCGCGGCGATTCTTAATA+GGG | 0.339738 | 8_2:+13414953 | Msa1235410:CDS |
| TCTTCAATTAGCTTAGGGTT+AGG | 0.344093 | 8_2:-13414654 | None:intergenic |
| GAGGTAAATGGCGCGTAATT+CGG | 0.350363 | 8_2:-13414571 | None:intergenic |
| GTGAAGTAGCGGCGGAGATT+GGG | 0.366938 | 8_2:-13414504 | None:intergenic |
| GAAAACTGTTCAGGATGTTA+TGG | 0.370308 | 8_2:+13415256 | Msa1235410:CDS |
| CTTCAATTAGCTTAGGGTTA+GGG | 0.381882 | 8_2:-13414653 | None:intergenic |
| GGTGAAGTAGCGGCGGAGAT+TGG | 0.381999 | 8_2:-13414505 | None:intergenic |
| CCATTTGTTGAACTTGTGTT+TGG | 0.382884 | 8_2:+13414078 | Msa1235410:five_prime_UTR |
| GGAAGAGAAGGAGGAGGAGA+AGG | 0.389816 | 8_2:-13414467 | None:intergenic |
| GCTGAGCAGTAAGCAAAATA+AGG | 0.389924 | 8_2:-13415409 | None:intergenic |
| TTCTTATGATGATGATGTTA+TGG | 0.392013 | 8_2:+13415286 | Msa1235410:CDS |
| TTGAAGAAGTTGGATGGGTT+GGG | 0.392285 | 8_2:+13415173 | Msa1235410:CDS |
| CGATTTATTCAGACATTCCT+TGG | 0.392434 | 8_2:+13415431 | Msa1235410:CDS |
| GAAATTCAAATTTCAATGTT+GGG | 0.393322 | 8_2:+13414784 | Msa1235410:CDS |
| TCATCCTCCCAAACAGCCTT+AGG | 0.396707 | 8_2:-13415212 | None:intergenic |
| AAGATCTCAATTCCCGATTC+CGG | 0.397943 | 8_2:+13414397 | Msa1235410:CDS |
| TCCGAAGAAGAAAACTGTTC+AGG | 0.400163 | 8_2:+13415247 | Msa1235410:CDS |
| GAGTAAACCTAAGGCTGTTT+GGG | 0.400665 | 8_2:+13415205 | Msa1235410:CDS |
| TTCAGATCTTCAATTAGCTT+AGG | 0.405765 | 8_2:-13414660 | None:intergenic |
| GGAAATTCAAATTTCAATGT+TGG | 0.407138 | 8_2:+13414783 | Msa1235410:CDS |
| TGCCACAACTGTTATTGATA+AGG | 0.407800 | 8_2:-13417944 | None:intergenic |
| AGTCTGTTCCACTTGTAATT+CGG | 0.409574 | 8_2:+13416156 | Msa1235410:CDS |
| AATATGAAAGTGAGTGAGTT+TGG | 0.410206 | 8_2:-13414233 | None:intergenic |
| GTAAGCAAAATAAGGCGATT+AGG | 0.416760 | 8_2:-13415401 | None:intergenic |
| GGAATGTAGAGGGAGGTGTT+CGG | 0.421929 | 8_2:-13414368 | None:intergenic |
| GTTGAAGAAGTTGGATGGGT+TGG | 0.422746 | 8_2:+13415172 | Msa1235410:CDS |
| TTCTTTCATTCGATCGGAGA+TGG | 0.424663 | 8_2:-13414547 | None:intergenic |
| TGATGAGAGGTTGAAGAAGT+TGG | 0.429311 | 8_2:+13415163 | Msa1235410:CDS |
| CTGTTGAATCCACATAGAAC+AGG | 0.430746 | 8_2:+13414732 | Msa1235410:CDS |
| TCAGATCTTCAATTAGCTTA+GGG | 0.433199 | 8_2:-13414659 | None:intergenic |
| AGGGTTGGTGGATGAGGTTG+TGG | 0.433360 | 8_2:-13414335 | None:intergenic |
| TGATAATCAACTTTAGAACT+TGG | 0.433498 | 8_2:-13414987 | None:intergenic |
| TTGTTGGCGCAAGAGGTAAA+TGG | 0.433822 | 8_2:-13414583 | None:intergenic |
| TGAAATTGACGCGCCGGAAT+CGG | 0.434406 | 8_2:-13414410 | None:intergenic |
| AAGGAGGAGGAGAAGGAGAA+TGG | 0.435348 | 8_2:-13414460 | None:intergenic |
| AATGGGATGCTTTGTTGTAC+AGG | 0.436207 | 8_2:+13416201 | Msa1235410:CDS |
| TTGAGAGACGTTGTTGTTGT+TGG | 0.437985 | 8_2:-13414599 | None:intergenic |
| CAATCTGCTGCTTGAGGGAT+GGG | 0.440779 | 8_2:-13416026 | None:intergenic |
| GAAATTGACGCGCCGGAATC+GGG | 0.444155 | 8_2:-13414409 | None:intergenic |
| GAGTGAGTGAGGGAGTGATT+TGG | 0.457122 | 8_2:-13414182 | None:intergenic |
| GATGCAGCTGAAAGTGAAAC+TGG | 0.457579 | 8_2:+13416101 | Msa1235410:CDS |
| TGGCAGGGCGGTCAAGTGTC+TGG | 0.459906 | 8_2:-13417715 | None:intergenic |
| ACAACTGTTATTGATAAGGT+TGG | 0.460195 | 8_2:-13417940 | None:intergenic |
| ACTGTTATGTCACAAAATTC+AGG | 0.460432 | 8_2:-13417876 | None:intergenic |
| CCAAACACAAGTTCAACAAA+TGG | 0.462576 | 8_2:-13414078 | None:intergenic |
| ATCCGTAGAAAGATATATGA+TGG | 0.464180 | 8_2:-13416081 | None:intergenic |
| TTGTACAGGCATCATATTGA+GGG | 0.469353 | 8_2:+13416215 | Msa1235410:CDS |
| TTCGGATTCTTTCATTCGAT+CGG | 0.469561 | 8_2:-13414553 | None:intergenic |
| AGTGAGTTTGGTGAATCGTT+AGG | 0.474226 | 8_2:-13414221 | None:intergenic |
| AGAAGAGGAAGAGAAGGAGG+AGG | 0.475110 | 8_2:-13414473 | None:intergenic |
| GCATGAATGGGTTATGCAAC+CGG | 0.476154 | 8_2:+13415340 | Msa1235410:CDS |
| CTTGCGGCTGAGAAAGGACT+GGG | 0.485227 | 8_2:+13417579 | Msa1235410:CDS |
| ATGCTGAAGTGGAGCATGAA+TGG | 0.486444 | 8_2:+13415327 | Msa1235410:CDS |
| CTGAGAAGAAGAGGAAGAGA+AGG | 0.490020 | 8_2:-13414479 | None:intergenic |
| GAGGAGGAATCCATTGGTAT+AGG | 0.490868 | 8_2:-13414294 | None:intergenic |
| AGAAGAAGAGGAAGAGAAGG+AGG | 0.491803 | 8_2:-13414476 | None:intergenic |
| CAAGATGTCTTCAGTGAAAG+TGG | 0.493024 | 8_2:-13417560 | None:intergenic |
| ACTGAAGGTGGAAGCTATGT+TGG | 0.493826 | 8_2:+13417489 | Msa1235410:intron |
| CACTTGTAATTCGGCCAGCT+CGG | 0.495746 | 8_2:+13416165 | Msa1235410:CDS |
| CAAAGAGGAAAACTATTGAA+TGG | 0.498658 | 8_2:+13414844 | Msa1235410:CDS |
| AGCGTGTTCATTGGAGCACC+TGG | 0.501788 | 8_2:+13417535 | Msa1235410:CDS |
| AGACATCTTGCGGCTGAGAA+AGG | 0.504340 | 8_2:+13417573 | Msa1235410:CDS |
| ATTACATTCCCTGTTCTATG+TGG | 0.511766 | 8_2:-13414741 | None:intergenic |
| CAGTCACTGATTGTGCTGAA+TGG | 0.512195 | 8_2:+13416131 | Msa1235410:CDS |
| TGCTGAAGTGGAGCATGAAT+GGG | 0.512626 | 8_2:+13415328 | Msa1235410:CDS |
| GTTGTTGTTGTTGGCGCAAG+AGG | 0.519086 | 8_2:-13414590 | None:intergenic |
| CATTCGATCGGAGATGGAGT+CGG | 0.521245 | 8_2:-13414541 | None:intergenic |
| TTGATCAGAGTTTGTCAAAG+AGG | 0.522693 | 8_2:+13414829 | Msa1235410:CDS |
| CAAATGATTCGACATTTGAC+CGG | 0.524066 | 8_2:-13414907 | None:intergenic |
| AATACAATCAAACCTATGGC+AGG | 0.529199 | 8_2:-13417731 | None:intergenic |
| TTATTCAGACATTCCTTGGA+AGG | 0.535294 | 8_2:+13415435 | Msa1235410:CDS |
| AAGATGCAATCTGCTGCTTG+AGG | 0.535947 | 8_2:-13416032 | None:intergenic |
| GCAATCTGCTGCTTGAGGGA+TGG | 0.535959 | 8_2:-13416027 | None:intergenic |
| AGATGCAATCTGCTGCTTGA+GGG | 0.537297 | 8_2:-13416031 | None:intergenic |
| AGCAGCAGATTGCATCTTGA+GGG | 0.538084 | 8_2:+13416037 | Msa1235410:CDS |
| ACACTTGACCGCCCTGCCAT+AGG | 0.539476 | 8_2:+13417719 | Msa1235410:three_prime_UTR |
| GTGGTGGTCGTCGTCTTCGT+CGG | 0.541192 | 8_2:-13414316 | None:intergenic |
| GTCGTCGTCTTCGTCGGAGG+AGG | 0.543349 | 8_2:-13414310 | None:intergenic |
| TCATATTGAGGGAGATTCAC+AGG | 0.543571 | 8_2:+13416226 | Msa1235410:CDS |
| CAATATTCGGTTCTTCACCT+TGG | 0.544512 | 8_2:-13417633 | None:intergenic |
| GTGAGTTTGGTGAATCGTTA+GGG | 0.544769 | 8_2:-13414220 | None:intergenic |
| GGCTCACTCACCTATACCAA+TGG | 0.546255 | 8_2:+13414284 | Msa1235410:exon |
| GTTGTACAGGCATCATATTG+AGG | 0.546833 | 8_2:+13416214 | Msa1235410:CDS |
| TAAGGCTGTTTGGGAGGATG+AGG | 0.546866 | 8_2:+13415214 | Msa1235410:CDS |
| CTCTCATCATCCAAATAACA+AGG | 0.547604 | 8_2:-13415149 | None:intergenic |
| ACCCATCATATATCTTTCTA+CGG | 0.548743 | 8_2:+13416079 | Msa1235410:CDS |
| GATGGAGTCGGAGGTGAATG+AGG | 0.551470 | 8_2:-13414529 | None:intergenic |
| AATCGTTAGGGTGACTCGGT+TGG | 0.551583 | 8_2:-13414208 | None:intergenic |
| GATGATGATGTTATGGCGAT+TGG | 0.552086 | 8_2:+13415293 | Msa1235410:CDS |
| TCTTGCGGCTGAGAAAGGAC+TGG | 0.552823 | 8_2:+13417578 | Msa1235410:CDS |
| GGTGAATCGTTAGGGTGACT+CGG | 0.555908 | 8_2:-13414212 | None:intergenic |
| AGAGGTTGAAGAAGTTGGAT+GGG | 0.564955 | 8_2:+13415168 | Msa1235410:CDS |
| CATGAATGGGTTATGCAACC+GGG | 0.566495 | 8_2:+13415341 | Msa1235410:CDS |
| CTGATCGGAAGAGTTGAAAA+CGG | 0.566837 | 8_2:-13414622 | None:intergenic |
| GCCATGTCTAGCGTGTTCAT+TGG | 0.568070 | 8_2:+13417526 | Msa1235410:CDS |
| AAGCAATGAAGTTCCTTCCA+AGG | 0.569377 | 8_2:-13415448 | None:intergenic |
| TCGGTTGGAGAGAGTGAGTG+AGG | 0.569623 | 8_2:-13414193 | None:intergenic |
| GAGAGGTTGAAGAAGTTGGA+TGG | 0.570927 | 8_2:+13415167 | Msa1235410:CDS |
| GCATCTTGAGGGTGATTGAG+AGG | 0.572158 | 8_2:+13416048 | Msa1235410:CDS |
| AATGTAGAGGGAGGTGTTCG+GGG | 0.572856 | 8_2:-13414366 | None:intergenic |
| AACCTTATCAATAACAGTTG+TGG | 0.572975 | 8_2:+13417942 | Msa1235410:three_prime_UTR |
| AAGATATATGATGGGTGCAT+CGG | 0.573461 | 8_2:-13416072 | None:intergenic |
| GATTGGGGACTGAGAAGAAG+AGG | 0.575965 | 8_2:-13414488 | None:intergenic |
| TGAAGTAGCGGCGGAGATTG+GGG | 0.576892 | 8_2:-13414503 | None:intergenic |
| TCATCCAAATAACAAGGTTG+AGG | 0.580652 | 8_2:-13415143 | None:intergenic |
| TCTTCGACGTGGAATGTAGA+GGG | 0.580661 | 8_2:-13414378 | None:intergenic |
| AAGCAGCAGATTGCATCTTG+AGG | 0.583857 | 8_2:+13416036 | Msa1235410:CDS |
| TGATGAGCAATTGGTCCACC+CGG | 0.584588 | 8_2:-13415359 | None:intergenic |
| CATCTTGAGGGTGATTGAGA+GGG | 0.588073 | 8_2:+13416049 | Msa1235410:CDS |
| GGAAGGTGAAATTGACGCGC+CGG | 0.588929 | 8_2:-13414416 | None:intergenic |
| AAGTGTCTGGTCCTGAGCAA+CGG | 0.596203 | 8_2:-13417702 | None:intergenic |
| TTTGGGTACGAGTAAACCTA+AGG | 0.599822 | 8_2:+13415196 | Msa1235410:CDS |
| ATCTTCGACGTGGAATGTAG+AGG | 0.600566 | 8_2:-13414379 | None:intergenic |
| GTTGGTGGATGAGGTTGTGG+TGG | 0.603656 | 8_2:-13414332 | None:intergenic |
| TCCAATGAACACGCTAGACA+TGG | 0.603721 | 8_2:-13417527 | None:intergenic |
| CGGTTGGAGAGAGTGAGTGA+GGG | 0.605462 | 8_2:-13414192 | None:intergenic |
| GTGTCACTCACGCGCCGCCG+TGG | 0.608225 | 8_2:+13414263 | Msa1235410:five_prime_UTR |
| TCTTCAGTGAAAGTGGAACC+AGG | 0.609539 | 8_2:-13417553 | None:intergenic |
| TGGTATAGGTGAGTGAGCCA+CGG | 0.611375 | 8_2:-13414280 | None:intergenic |
| CTTGTTATTTGGATGATGAG+AGG | 0.615113 | 8_2:+13415150 | Msa1235410:CDS |
| TAAACCTAAGGCTGTTTGGG+AGG | 0.621039 | 8_2:+13415208 | Msa1235410:CDS |
| TCCGTAGAAAGATATATGAT+GGG | 0.622070 | 8_2:-13416080 | None:intergenic |
| CTTTCACTGAAGACATCTTG+CGG | 0.622202 | 8_2:+13417563 | Msa1235410:CDS |
| GTGGTCGTCGTCTTCGTCGG+AGG | 0.625911 | 8_2:-13414313 | None:intergenic |
| ACGGCGGCGCGTGAGTGACA+CGG | 0.627850 | 8_2:-13414261 | None:intergenic |
| CGAGCTGGCCGAATTACAAG+TGG | 0.629533 | 8_2:-13416164 | None:intergenic |
| TCGTCGGAGGAGGAATCCAT+TGG | 0.632241 | 8_2:-13414300 | None:intergenic |
| AATCTGCTGCTTGAGGGATG+GGG | 0.632784 | 8_2:-13416025 | None:intergenic |
| TGTGATGAGTATCTTTGCCA+AGG | 0.635336 | 8_2:+13417616 | Msa1235410:CDS |
| TGAATGAGGTGGTGAAGTAG+CGG | 0.637393 | 8_2:-13414515 | None:intergenic |
| ATACAATCAAACCTATGGCA+GGG | 0.639583 | 8_2:-13417730 | None:intergenic |
| GCAGAGTAGAGTGTAAGCGA+AGG | 0.648225 | 8_2:-13414145 | None:intergenic |
| TCGATCGGAGATGGAGTCGG+AGG | 0.656256 | 8_2:-13414538 | None:intergenic |
| GCGAAGGAGATTGAATGTGT+CGG | 0.656645 | 8_2:-13414129 | None:intergenic |
| ATGAAGATCGAAGATAATGA+CGG | 0.659935 | 8_2:+13417669 | Msa1235410:exon |
| ATGAGGTGGTGAAGTAGCGG+CGG | 0.673475 | 8_2:-13414512 | None:intergenic |
| TGTTGAATCCACATAGAACA+GGG | 0.688035 | 8_2:+13414733 | Msa1235410:CDS |
| TGAAGAACCGAATATTGTAG+CGG | 0.689587 | 8_2:+13417639 | Msa1235410:CDS |
| GAATGGGTTATGCAACCGGG+TGG | 0.697233 | 8_2:+13415344 | Msa1235410:CDS |
| GGAGTCGGAGGTGAATGAGG+TGG | 0.703315 | 8_2:-13414526 | None:intergenic |
| TCGACGTGGAATGTAGAGGG+AGG | 0.708402 | 8_2:-13414375 | None:intergenic |
| TTTGGGAGGATGAGGATACG+AGG | 0.712720 | 8_2:+13415222 | Msa1235410:CDS |
| TATAGGTGAGTGAGCCACGG+CGG | 0.722299 | 8_2:-13414277 | None:intergenic |
| TTGCGGCTGAGAAAGGACTG+GGG | 0.724371 | 8_2:+13417580 | Msa1235410:CDS |
| CAATCAAACCTATGGCAGGG+CGG | 0.727009 | 8_2:-13417727 | None:intergenic |
| GGGAATTGAGATCTTCGACG+TGG | 0.734919 | 8_2:-13414389 | None:intergenic |
| GCGGCGCGTGAGTGACACGG+TGG | 0.779159 | 8_2:-13414258 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATTAATAAATGTTTA+GGG | + | chr8_2:13415033-13415052 | Msa1235410:CDS | 10.0% |
| !! | TTCAAATTAAAAGAAAAAAT+GGG | - | chr8_2:13417918-13417937 | None:intergenic | 10.0% |
| !! | TTTCAAATTAAAAGAAAAAA+TGG | - | chr8_2:13417919-13417938 | None:intergenic | 10.0% |
| !!! | TAAATTGTCATTTTCATTTT+TGG | + | chr8_2:13414101-13414120 | Msa1235410:five_prime_UTR | 15.0% |
| !!! | ACTAAAAATTTATCCTTTTT+AGG | - | chr8_2:13414873-13414892 | None:intergenic | 15.0% |
| !! | GATCATATTAATAAATGTTT+AGG | + | chr8_2:13415032-13415051 | Msa1235410:CDS | 15.0% |
| !!! | TTTAATTTCTCATAAGATTA+TGG | + | chr8_2:13415530-13415549 | Msa1235410:intron | 15.0% |
| !! | TTAATTTCTCATAAGATTAT+GGG | + | chr8_2:13415531-13415550 | Msa1235410:intron | 15.0% |
| !! | GAAATTCAAATTTCAATGTT+GGG | + | chr8_2:13414784-13414803 | Msa1235410:CDS | 20.0% |
| !! | TAATTTCTCATAAGATTATG+GGG | + | chr8_2:13415532-13415551 | Msa1235410:intron | 20.0% |
| !! | ATTTACAAATGAAAGTTTCA+TGG | + | chr8_2:13416346-13416365 | Msa1235410:intron | 20.0% |
| !! | TTTACAAATGAAAGTTTCAT+GGG | + | chr8_2:13416347-13416366 | Msa1235410:intron | 20.0% |
| !! | TTTCATAGTGGTTTAAAAAT+TGG | - | chr8_2:13417349-13417368 | None:intergenic | 20.0% |
| ! | ATTGATCCTGAATTCAATTT+CGG | + | chr8_2:13414762-13414781 | Msa1235410:CDS | 25.0% |
| ! | GGAAATTCAAATTTCAATGT+TGG | + | chr8_2:13414783-13414802 | Msa1235410:CDS | 25.0% |
| ! | TATTGAATGGAATCCTAAAA+AGG | + | chr8_2:13414857-13414876 | Msa1235410:CDS | 25.0% |
| !!! | TGATAATCAACTTTAGAACT+TGG | - | chr8_2:13414990-13415009 | None:intergenic | 25.0% |
| !! | TGAATTTTCGAATGTTAAGA+AGG | + | chr8_2:13415079-13415098 | Msa1235410:CDS | 25.0% |
| !! | GAATTTTCGAATGTTAAGAA+GGG | + | chr8_2:13415080-13415099 | Msa1235410:CDS | 25.0% |
| !! | TTCTTATGATGATGATGTTA+TGG | + | chr8_2:13415286-13415305 | Msa1235410:CDS | 25.0% |
| ! | TAAACCAGAAAAAGGAATAA+AGG | - | chr8_2:13415514-13415533 | None:intergenic | 25.0% |
| ! | TGAGAAATTAAACCAGAAAA+AGG | - | chr8_2:13415522-13415541 | None:intergenic | 25.0% |
| ! | TTAATCTAATGCATAGATTC+AGG | - | chr8_2:13415604-13415623 | None:intergenic | 25.0% |
| !!! | AGTTGTTTTGTTTCATTTCA+TGG | + | chr8_2:13415835-13415854 | Msa1235410:intron | 25.0% |
| !! | CTTTTTACATTATTTCAAGC+AGG | - | chr8_2:13415870-13415889 | None:intergenic | 25.0% |
| ! | AACATGAAAATGGATAAGTA+AGG | - | chr8_2:13415973-13415992 | None:intergenic | 25.0% |
| ! | TTAAACTTAAATAGTGTACC+TGG | + | chr8_2:13416285-13416304 | Msa1235410:intron | 25.0% |
| !! | TAGAGTTTTTACCATATCTT+AGG | + | chr8_2:13416389-13416408 | Msa1235410:intron | 25.0% |
| !! | AGAGTTTTTACCATATCTTA+GGG | + | chr8_2:13416390-13416409 | Msa1235410:intron | 25.0% |
| ! | TTTGTAAATTGTAACAGAAG+AGG | - | chr8_2:13416506-13416525 | None:intergenic | 25.0% |
| ! | GAATTTATTGTTGTAAGTTC+TGG | + | chr8_2:13416589-13416608 | Msa1235410:intron | 25.0% |
| ! | ACTAAGCTTCAAACTTAAAA+GGG | - | chr8_2:13416649-13416668 | None:intergenic | 25.0% |
| ! | TACTAAGCTTCAAACTTAAA+AGG | - | chr8_2:13416650-13416669 | None:intergenic | 25.0% |
| ! | AGATACTTAAACTTATTCCT+GGG | - | chr8_2:13416814-13416833 | None:intergenic | 25.0% |
| !! | AATCAATTCTATACCGTTTT+GGG | - | chr8_2:13416863-13416882 | None:intergenic | 25.0% |
| !! | TAATCAATTCTATACCGTTT+TGG | - | chr8_2:13416864-13416883 | None:intergenic | 25.0% |
| !!! | GTGTTTACAAGTTGTTATTT+TGG | - | chr8_2:13417033-13417052 | None:intergenic | 25.0% |
| ! | ATATCAAACCAAATTTAGCA+GGG | - | chr8_2:13417150-13417169 | None:intergenic | 25.0% |
| ! | TATGAGCCTACAAAAAAAAT+CGG | - | chr8_2:13417183-13417202 | None:intergenic | 25.0% |
| ! | TGACATAGTGGTTTAAAAAT+TGG | - | chr8_2:13417381-13417400 | None:intergenic | 25.0% |
| ! | GACTCTCTTTCAATTTATTT+CGG | + | chr8_2:13417441-13417460 | Msa1235410:intron | 25.0% |
| !! | TATGAATATTTTCACACTGA+AGG | + | chr8_2:13417474-13417493 | Msa1235410:intron | 25.0% |
| ! | GAAAAATACAATCAAACCTA+TGG | - | chr8_2:13417738-13417757 | None:intergenic | 25.0% |
| AATATGAAAGTGAGTGAGTT+TGG | - | chr8_2:13414236-13414255 | None:intergenic | 30.0% | |
| !!! | AATGTAGTGCTTTTTTTGGA+AGG | - | chr8_2:13414436-13414455 | None:intergenic | 30.0% |
| ! | TCAGATCTTCAATTAGCTTA+GGG | - | chr8_2:13414662-13414681 | None:intergenic | 30.0% |
| ! | TTCAGATCTTCAATTAGCTT+AGG | - | chr8_2:13414663-13414682 | None:intergenic | 30.0% |
| GAATTTCCGAAATTGAATTC+AGG | - | chr8_2:13414771-13414790 | None:intergenic | 30.0% | |
| CAAAGAGGAAAACTATTGAA+TGG | + | chr8_2:13414844-13414863 | Msa1235410:CDS | 30.0% | |
| !! | TTAGTTGCTATTTGTGTTTC+CGG | + | chr8_2:13414888-13414907 | Msa1235410:CDS | 30.0% |
| !! | AGAAAAGCATATGTTTTTCG+CGG | + | chr8_2:13414938-13414957 | Msa1235410:CDS | 30.0% |
| !!! | TGATGTTTTTTATGCTGAAG+TGG | + | chr8_2:13415316-13415335 | Msa1235410:CDS | 30.0% |
| ! | ACTTCATTGCTTTGCATTTT+CGG | + | chr8_2:13415459-13415478 | Msa1235410:CDS | 30.0% |
| ! | ACTACCTTTATTCCTTTTTC+TGG | + | chr8_2:13415507-13415526 | Msa1235410:intron | 30.0% |
| ! | TGCTATTAAAGCTGATTCAA+CGG | - | chr8_2:13415667-13415686 | None:intergenic | 30.0% |
| AGTCAACAACTCAAAATCTT+TGG | - | chr8_2:13415720-13415739 | None:intergenic | 30.0% | |
| AAAAGTTATGCATGCATGTA+AGG | + | chr8_2:13415885-13415904 | Msa1235410:intron | 30.0% | |
| AATGGATAAGTAAGGCAATA+TGG | - | chr8_2:13415965-13415984 | None:intergenic | 30.0% | |
| CATTACTGCAAACATGAAAA+TGG | - | chr8_2:13415983-13416002 | None:intergenic | 30.0% | |
| ACCCATCATATATCTTTCTA+CGG | + | chr8_2:13416079-13416098 | Msa1235410:CDS | 30.0% | |
| TCCGTAGAAAGATATATGAT+GGG | - | chr8_2:13416083-13416102 | None:intergenic | 30.0% | |
| ATCCGTAGAAAGATATATGA+TGG | - | chr8_2:13416084-13416103 | None:intergenic | 30.0% | |
| GCACATGAAAAAAATAAGCA+AGG | - | chr8_2:13416264-13416283 | None:intergenic | 30.0% | |
| GTAATCCTAATGATCAGATA+TGG | - | chr8_2:13416325-13416344 | None:intergenic | 30.0% | |
| GAATTCATTGTGTCTATTCT+AGG | + | chr8_2:13416420-13416439 | Msa1235410:intron | 30.0% | |
| ATAAATTCAAGCGAAAACCA+GGG | - | chr8_2:13416577-13416596 | None:intergenic | 30.0% | |
| AATAAATTCAAGCGAAAACC+AGG | - | chr8_2:13416578-13416597 | None:intergenic | 30.0% | |
| ! | TGGTATAACATTTTACTGTC+AGG | + | chr8_2:13416702-13416721 | Msa1235410:intron | 30.0% |
| ! | AACATTTTACTGTCAGGAAA+AGG | + | chr8_2:13416708-13416727 | Msa1235410:intron | 30.0% |
| CAGATACTTAAACTTATTCC+TGG | - | chr8_2:13416815-13416834 | None:intergenic | 30.0% | |
| ! | ATCAATTCTATACCGTTTTG+GGG | - | chr8_2:13416862-13416881 | None:intergenic | 30.0% |
| TTTGTCAGTAGAGAATTATC+TGG | - | chr8_2:13416946-13416965 | None:intergenic | 30.0% | |
| GTTAGTTAGTAGAAGTTAGT+TGG | - | chr8_2:13417079-13417098 | None:intergenic | 30.0% | |
| CATATCAAACCAAATTTAGC+AGG | - | chr8_2:13417151-13417170 | None:intergenic | 30.0% | |
| !! | CTGCTAAATTTGGTTTGATA+TGG | + | chr8_2:13417149-13417168 | Msa1235410:intron | 30.0% |
| !!! | TAGTCACCGATTTTTTTTGT+AGG | + | chr8_2:13417174-13417193 | Msa1235410:intron | 30.0% |
| ! | TTTTGTAGGCTCATAATGAA+AGG | + | chr8_2:13417188-13417207 | Msa1235410:intron | 30.0% |
| ACATCAAATTGTTGACATAG+TGG | - | chr8_2:13417393-13417412 | None:intergenic | 30.0% | |
| ! | TCATTTTCCGCTACAATATT+CGG | - | chr8_2:13417649-13417668 | None:intergenic | 30.0% |
| ATGAAGATCGAAGATAATGA+CGG | + | chr8_2:13417669-13417688 | Msa1235410:exon | 30.0% | |
| ACTGTTATGTCACAAAATTC+AGG | - | chr8_2:13417879-13417898 | None:intergenic | 30.0% | |
| ! | TGAATTTTGTGACATAACAG+TGG | + | chr8_2:13417878-13417897 | Msa1235410:three_prime_UTR | 30.0% |
| ACAACTGTTATTGATAAGGT+TGG | - | chr8_2:13417943-13417962 | None:intergenic | 30.0% | |
| AACCTTATCAATAACAGTTG+TGG | + | chr8_2:13417942-13417961 | Msa1235410:three_prime_UTR | 30.0% | |
| CCAAACACAAGTTCAACAAA+TGG | - | chr8_2:13414081-13414100 | None:intergenic | 35.0% | |
| ! | CCATTTGTTGAACTTGTGTT+TGG | + | chr8_2:13414078-13414097 | Msa1235410:five_prime_UTR | 35.0% |
| !!! | CGAGAATGTAGTGCTTTTTT+TGG | - | chr8_2:13414440-13414459 | None:intergenic | 35.0% |
| TTCGGATTCTTTCATTCGAT+CGG | - | chr8_2:13414556-13414575 | None:intergenic | 35.0% | |
| !!! | GTTAGGGTTTTGATTCTGAT+CGG | - | chr8_2:13414640-13414659 | None:intergenic | 35.0% |
| ! | CTTCAATTAGCTTAGGGTTA+GGG | - | chr8_2:13414656-13414675 | None:intergenic | 35.0% |
| ! | TCTTCAATTAGCTTAGGGTT+AGG | - | chr8_2:13414657-13414676 | None:intergenic | 35.0% |
| TGTTGAATCCACATAGAACA+GGG | + | chr8_2:13414733-13414752 | Msa1235410:CDS | 35.0% | |
| ATTACATTCCCTGTTCTATG+TGG | - | chr8_2:13414744-13414763 | None:intergenic | 35.0% | |
| TTGATCAGAGTTTGTCAAAG+AGG | + | chr8_2:13414829-13414848 | Msa1235410:CDS | 35.0% | |
| CAAATGATTCGACATTTGAC+CGG | - | chr8_2:13414910-13414929 | None:intergenic | 35.0% | |
| !! | TTTGCCTCAACCTTGTTATT+TGG | + | chr8_2:13415139-13415158 | Msa1235410:CDS | 35.0% |
| TCATCCAAATAACAAGGTTG+AGG | - | chr8_2:13415146-13415165 | None:intergenic | 35.0% | |
| CTCTCATCATCCAAATAACA+AGG | - | chr8_2:13415152-13415171 | None:intergenic | 35.0% | |
| !! | CTTGTTATTTGGATGATGAG+AGG | + | chr8_2:13415150-13415169 | Msa1235410:CDS | 35.0% |
| ! | TCCTGAACAGTTTTCTTCTT+CGG | - | chr8_2:13415251-13415270 | None:intergenic | 35.0% |
| GAAAACTGTTCAGGATGTTA+TGG | + | chr8_2:13415256-13415275 | Msa1235410:CDS | 35.0% | |
| !! | GTTTTGCATTGATGAGCAAT+TGG | - | chr8_2:13415371-13415390 | None:intergenic | 35.0% |
| GTAAGCAAAATAAGGCGATT+AGG | - | chr8_2:13415404-13415423 | None:intergenic | 35.0% | |
| CGATTTATTCAGACATTCCT+TGG | + | chr8_2:13415431-13415450 | Msa1235410:CDS | 35.0% | |
| TTATTCAGACATTCCTTGGA+AGG | + | chr8_2:13415435-13415454 | Msa1235410:CDS | 35.0% | |
| !!! | GACACGGTTTTTTGAAATTC+TGG | + | chr8_2:13415483-13415502 | Msa1235410:CDS | 35.0% |
| CTTGCATATGTAGTCAAGAT+CGG | + | chr8_2:13415634-13415653 | Msa1235410:intron | 35.0% | |
| TAGCAAACTTGAAATCAGAG+CGG | + | chr8_2:13415682-13415701 | Msa1235410:intron | 35.0% | |
| !!! | TGCGTAGAATTTTTTACTGC+AGG | + | chr8_2:13415747-13415766 | Msa1235410:intron | 35.0% |
| !!! | GCGTAGAATTTTTTACTGCA+GGG | + | chr8_2:13415748-13415767 | Msa1235410:intron | 35.0% |
| GTTGGCACTTCATTCAAATT+CGG | - | chr8_2:13415776-13415795 | None:intergenic | 35.0% | |
| ! | TTTTCATGGCTCATGAGTTA+TGG | + | chr8_2:13415800-13415819 | Msa1235410:intron | 35.0% |
| !! | AAAGAGAGCACTAAAATTGC+AGG | - | chr8_2:13415933-13415952 | None:intergenic | 35.0% |
| AAGTAAGGCAATATGGTAGA+GGG | - | chr8_2:13415958-13415977 | None:intergenic | 35.0% | |
| TAAGTAAGGCAATATGGTAG+AGG | - | chr8_2:13415959-13415978 | None:intergenic | 35.0% | |
| !! | AAGATATATGATGGGTGCAT+CGG | - | chr8_2:13416075-13416094 | None:intergenic | 35.0% |
| AGTCTGTTCCACTTGTAATT+CGG | + | chr8_2:13416156-13416175 | Msa1235410:CDS | 35.0% | |
| TCGGAATTCAGCAGAAAAAT+GGG | + | chr8_2:13416184-13416203 | Msa1235410:CDS | 35.0% | |
| TTGTACAGGCATCATATTGA+GGG | + | chr8_2:13416215-13416234 | Msa1235410:CDS | 35.0% | |
| CAGATATGGATGGTGAATTT+AGG | - | chr8_2:13416311-13416330 | None:intergenic | 35.0% | |
| ACCATCCATATCTGATCATT+AGG | + | chr8_2:13416317-13416336 | Msa1235410:intron | 35.0% | |
| TCCTAATGATCAGATATGGA+TGG | - | chr8_2:13416321-13416340 | None:intergenic | 35.0% | |
| TAAATTCAAGCGAAAACCAG+GGG | - | chr8_2:13416576-13416595 | None:intergenic | 35.0% | |
| ! | ACTTAAAAGGGCCTTTTCAA+GGG | - | chr8_2:13416637-13416656 | None:intergenic | 35.0% |
| ! | AACTTAAAAGGGCCTTTTCA+AGG | - | chr8_2:13416638-13416657 | None:intergenic | 35.0% |
| ! | TCATTCTCATTTTGTCACAC+TGG | + | chr8_2:13416682-13416701 | Msa1235410:intron | 35.0% |
| ! | AAGGAAACTTTAAGAGCTGT+AGG | + | chr8_2:13416727-13416746 | Msa1235410:intron | 35.0% |
| ! | GGAAACAAGTTGAATACCAT+AGG | - | chr8_2:13416754-13416773 | None:intergenic | 35.0% |
| TTCAAGGCTTAGACAACTAA+AGG | - | chr8_2:13416775-13416794 | None:intergenic | 35.0% | |
| CTTTGTGTAATTCCCCAAAA+CGG | + | chr8_2:13416847-13416866 | Msa1235410:intron | 35.0% | |
| GTCTTTAAATATCCCTCGAA+TGG | - | chr8_2:13417000-13417019 | None:intergenic | 35.0% | |
| AATTTAGCAGGGATTCTGTA+AGG | - | chr8_2:13417139-13417158 | None:intergenic | 35.0% | |
| TACAGAATCCCTGCTAAATT+TGG | + | chr8_2:13417139-13417158 | Msa1235410:intron | 35.0% | |
| ! | AAAATTTTCAGAGAGAGGGA+AGG | - | chr8_2:13417297-13417316 | None:intergenic | 35.0% |
| ! | CGCAAAAATTTTCAGAGAGA+GGG | - | chr8_2:13417301-13417320 | None:intergenic | 35.0% |
| AAACCACTATGAAAGCTGAT+TGG | + | chr8_2:13417355-13417374 | Msa1235410:intron | 35.0% | |
| ! | GAATATTTTCACACTGAAGG+TGG | + | chr8_2:13417477-13417496 | Msa1235410:intron | 35.0% |
| TGAAGAACCGAATATTGTAG+CGG | + | chr8_2:13417639-13417658 | Msa1235410:CDS | 35.0% | |
| ATACAATCAAACCTATGGCA+GGG | - | chr8_2:13417733-13417752 | None:intergenic | 35.0% | |
| AATACAATCAAACCTATGGC+AGG | - | chr8_2:13417734-13417753 | None:intergenic | 35.0% | |
| ! | ATTTTGTGACATAACAGTGG+TGG | + | chr8_2:13417881-13417900 | Msa1235410:three_prime_UTR | 35.0% |
| ! | GTGAGTTTGGTGAATCGTTA+GGG | - | chr8_2:13414223-13414242 | None:intergenic | 40.0% |
| ! | AGTGAGTTTGGTGAATCGTT+AGG | - | chr8_2:13414224-13414243 | None:intergenic | 40.0% |
| AAGATCTCAATTCCCGATTC+CGG | + | chr8_2:13414397-13414416 | Msa1235410:CDS | 40.0% | |
| TTCTTTCATTCGATCGGAGA+TGG | - | chr8_2:13414550-13414569 | None:intergenic | 40.0% | |
| ! | TTGAGAGACGTTGTTGTTGT+TGG | - | chr8_2:13414602-13414621 | None:intergenic | 40.0% |
| CTGATCGGAAGAGTTGAAAA+CGG | - | chr8_2:13414625-13414644 | None:intergenic | 40.0% | |
| CTGTTGAATCCACATAGAAC+AGG | + | chr8_2:13414732-13414751 | Msa1235410:CDS | 40.0% | |
| ! | TTTTCGCGGCGATTCTTAAT+AGG | + | chr8_2:13414952-13414971 | Msa1235410:CDS | 40.0% |
| TTTCGCGGCGATTCTTAATA+GGG | + | chr8_2:13414953-13414972 | Msa1235410:CDS | 40.0% | |
| ! | GGCGATTCTTAATAGGGTTT+TGG | + | chr8_2:13414959-13414978 | Msa1235410:CDS | 40.0% |
| TGATGAGAGGTTGAAGAAGT+TGG | + | chr8_2:13415163-13415182 | Msa1235410:CDS | 40.0% | |
| AGAGGTTGAAGAAGTTGGAT+GGG | + | chr8_2:13415168-13415187 | Msa1235410:CDS | 40.0% | |
| ! | TTGAAGAAGTTGGATGGGTT+GGG | + | chr8_2:13415173-13415192 | Msa1235410:CDS | 40.0% |
| TTTGGGTACGAGTAAACCTA+AGG | + | chr8_2:13415196-13415215 | Msa1235410:CDS | 40.0% | |
| GAGTAAACCTAAGGCTGTTT+GGG | + | chr8_2:13415205-13415224 | Msa1235410:CDS | 40.0% | |
| TCCGAAGAAGAAAACTGTTC+AGG | + | chr8_2:13415247-13415266 | Msa1235410:CDS | 40.0% | |
| ! | GATGATGATGTTATGGCGAT+TGG | + | chr8_2:13415293-13415312 | Msa1235410:CDS | 40.0% |
| GCTGAGCAGTAAGCAAAATA+AGG | - | chr8_2:13415412-13415431 | None:intergenic | 40.0% | |
| AAGCAATGAAGTTCCTTCCA+AGG | - | chr8_2:13415451-13415470 | None:intergenic | 40.0% | |
| CGATCTTGACTACATATGCA+AGG | - | chr8_2:13415636-13415655 | None:intergenic | 40.0% | |
| ! | AAGTGCCAACTGCATTTTCA+TGG | + | chr8_2:13415786-13415805 | Msa1235410:intron | 40.0% |
| ATGAGCCATGAAAATGCAGT+TGG | - | chr8_2:13415794-13415813 | None:intergenic | 40.0% | |
| CTCGGAATTCAGCAGAAAAA+TGG | + | chr8_2:13416183-13416202 | Msa1235410:CDS | 40.0% | |
| ! | AATGGGATGCTTTGTTGTAC+AGG | + | chr8_2:13416201-13416220 | Msa1235410:CDS | 40.0% |
| GTTGTACAGGCATCATATTG+AGG | + | chr8_2:13416214-13416233 | Msa1235410:CDS | 40.0% | |
| TCATATTGAGGGAGATTCAC+AGG | + | chr8_2:13416226-13416245 | Msa1235410:CDS | 40.0% | |
| TTCGAAGCTTCCCTAAGATA+TGG | - | chr8_2:13416403-13416422 | None:intergenic | 40.0% | |
| !! | CTTAAAAGGGCCTTTTCAAG+GGG | - | chr8_2:13416636-13416655 | None:intergenic | 40.0% |
| TTTAAGAGCTGTAGGTCCTA+TGG | + | chr8_2:13416735-13416754 | Msa1235410:intron | 40.0% | |
| TAGTTGTCTAAGCCTTGAAG+CGG | + | chr8_2:13416776-13416795 | Msa1235410:intron | 40.0% | |
| AGATGATAACCTTCCACACA+AGG | + | chr8_2:13416891-13416910 | Msa1235410:intron | 40.0% | |
| AGAGAATTATCTGGCGTGAA+AGG | - | chr8_2:13416937-13416956 | None:intergenic | 40.0% | |
| AATATCCCTCGAATGGTAGA+GGG | - | chr8_2:13416993-13417012 | None:intergenic | 40.0% | |
| AAATATCCCTCGAATGGTAG+AGG | - | chr8_2:13416994-13417013 | None:intergenic | 40.0% | |
| ! | GCGCAAAAATTTTCAGAGAG+AGG | - | chr8_2:13417302-13417321 | None:intergenic | 40.0% |
| CAAGATGTCTTCAGTGAAAG+TGG | - | chr8_2:13417563-13417582 | None:intergenic | 40.0% | |
| CTTTCACTGAAGACATCTTG+CGG | + | chr8_2:13417563-13417582 | Msa1235410:CDS | 40.0% | |
| TGTGATGAGTATCTTTGCCA+AGG | + | chr8_2:13417616-13417635 | Msa1235410:CDS | 40.0% | |
| CAATATTCGGTTCTTCACCT+TGG | - | chr8_2:13417636-13417655 | None:intergenic | 40.0% | |
| GCGAAGGAGATTGAATGTGT+CGG | - | chr8_2:13414132-13414151 | None:intergenic | 45.0% | |
| GAGGAGGAATCCATTGGTAT+AGG | - | chr8_2:13414297-13414316 | None:intergenic | 45.0% | |
| TCTTCGACGTGGAATGTAGA+GGG | - | chr8_2:13414381-13414400 | None:intergenic | 45.0% | |
| ATCTTCGACGTGGAATGTAG+AGG | - | chr8_2:13414382-13414401 | None:intergenic | 45.0% | |
| AGAAGAAGAGGAAGAGAAGG+AGG | - | chr8_2:13414479-13414498 | None:intergenic | 45.0% | |
| CTGAGAAGAAGAGGAAGAGA+AGG | - | chr8_2:13414482-13414501 | None:intergenic | 45.0% | |
| TGAATGAGGTGGTGAAGTAG+CGG | - | chr8_2:13414518-13414537 | None:intergenic | 45.0% | |
| GAGGTAAATGGCGCGTAATT+CGG | - | chr8_2:13414574-13414593 | None:intergenic | 45.0% | |
| TTGTTGGCGCAAGAGGTAAA+TGG | - | chr8_2:13414586-13414605 | None:intergenic | 45.0% | |
| GAGAGGTTGAAGAAGTTGGA+TGG | + | chr8_2:13415167-13415186 | Msa1235410:CDS | 45.0% | |
| GTTGAAGAAGTTGGATGGGT+TGG | + | chr8_2:13415172-13415191 | Msa1235410:CDS | 45.0% | |
| !! | AAGTTGGATGGGTTGGGTTT+GGG | + | chr8_2:13415179-13415198 | Msa1235410:CDS | 45.0% |
| CGAGTAAACCTAAGGCTGTT+TGG | + | chr8_2:13415204-13415223 | Msa1235410:CDS | 45.0% | |
| TAAACCTAAGGCTGTTTGGG+AGG | + | chr8_2:13415208-13415227 | Msa1235410:CDS | 45.0% | |
| ATGCTGAAGTGGAGCATGAA+TGG | + | chr8_2:13415327-13415346 | Msa1235410:CDS | 45.0% | |
| TGCTGAAGTGGAGCATGAAT+GGG | + | chr8_2:13415328-13415347 | Msa1235410:CDS | 45.0% | |
| !! | GCATGAATGGGTTATGCAAC+CGG | + | chr8_2:13415340-13415359 | Msa1235410:CDS | 45.0% |
| !! | CATGAATGGGTTATGCAACC+GGG | + | chr8_2:13415341-13415360 | Msa1235410:CDS | 45.0% |
| ! | GCTTTGCATTTTCGGAGACA+CGG | + | chr8_2:13415467-13415486 | Msa1235410:CDS | 45.0% |
| ! | AGATGCAATCTGCTGCTTGA+GGG | - | chr8_2:13416034-13416053 | None:intergenic | 45.0% |
| ! | AAGATGCAATCTGCTGCTTG+AGG | - | chr8_2:13416035-13416054 | None:intergenic | 45.0% |
| AAGCAGCAGATTGCATCTTG+AGG | + | chr8_2:13416036-13416055 | Msa1235410:CDS | 45.0% | |
| AGCAGCAGATTGCATCTTGA+GGG | + | chr8_2:13416037-13416056 | Msa1235410:CDS | 45.0% | |
| CATCTTGAGGGTGATTGAGA+GGG | + | chr8_2:13416049-13416068 | Msa1235410:CDS | 45.0% | |
| GATGCAGCTGAAAGTGAAAC+TGG | + | chr8_2:13416101-13416120 | Msa1235410:CDS | 45.0% | |
| ! | CAGTCACTGATTGTGCTGAA+TGG | + | chr8_2:13416131-13416150 | Msa1235410:CDS | 45.0% |
| ! | TTTTCTGCTGAATTCCGAGC+TGG | - | chr8_2:13416182-13416201 | None:intergenic | 45.0% |
| ATGGATGGTGAATTTAGGCC+AGG | - | chr8_2:13416306-13416325 | None:intergenic | 45.0% | |
| !! | ACAACTGTTGATAATGCCCC+TGG | + | chr8_2:13416557-13416576 | Msa1235410:intron | 45.0% |
| !! | CCTTTTCAAGGGGAAAAAGG+GGG | - | chr8_2:13416626-13416645 | None:intergenic | 45.0% |
| !! | GCCTTTTCAAGGGGAAAAAG+GGG | - | chr8_2:13416627-13416646 | None:intergenic | 45.0% |
| !! | GGCCTTTTCAAGGGGAAAAA+GGG | - | chr8_2:13416628-13416647 | None:intergenic | 45.0% |
| AGTTGTCTAAGCCTTGAAGC+GGG | + | chr8_2:13416777-13416796 | Msa1235410:intron | 45.0% | |
| !! | TGAAAGGAGAGTGCTCCTTT+GGG | - | chr8_2:13416921-13416940 | None:intergenic | 45.0% |
| ATATCCCTCGAATGGTAGAG+GGG | - | chr8_2:13416992-13417011 | None:intergenic | 45.0% | |
| TGGCCAATCAGCTTTCATAG+TGG | - | chr8_2:13417361-13417380 | None:intergenic | 45.0% | |
| ACTGAAGGTGGAAGCTATGT+TGG | + | chr8_2:13417489-13417508 | Msa1235410:intron | 45.0% | |
| TCCAATGAACACGCTAGACA+TGG | - | chr8_2:13417530-13417549 | None:intergenic | 45.0% | |
| TCTTCAGTGAAAGTGGAACC+AGG | - | chr8_2:13417556-13417575 | None:intergenic | 45.0% | |
| GCAGAGTAGAGTGTAAGCGA+AGG | - | chr8_2:13414148-13414167 | None:intergenic | 50.0% | |
| GAGTGAGTGAGGGAGTGATT+TGG | - | chr8_2:13414185-13414204 | None:intergenic | 50.0% | |
| !! | AATCGTTAGGGTGACTCGGT+TGG | - | chr8_2:13414211-13414230 | None:intergenic | 50.0% |
| GGTGAATCGTTAGGGTGACT+CGG | - | chr8_2:13414215-13414234 | None:intergenic | 50.0% | |
| TGGTATAGGTGAGTGAGCCA+CGG | - | chr8_2:13414283-13414302 | None:intergenic | 50.0% | |
| GGCTCACTCACCTATACCAA+TGG | + | chr8_2:13414284-13414303 | Msa1235410:exon | 50.0% | |
| !! | AATGTAGAGGGAGGTGTTCG+GGG | - | chr8_2:13414369-13414388 | None:intergenic | 50.0% |
| !! | GAATGTAGAGGGAGGTGTTC+GGG | - | chr8_2:13414370-13414389 | None:intergenic | 50.0% |
| !! | GGAATGTAGAGGGAGGTGTT+CGG | - | chr8_2:13414371-13414390 | None:intergenic | 50.0% |
| GGGAATTGAGATCTTCGACG+TGG | - | chr8_2:13414392-13414411 | None:intergenic | 50.0% | |
| TGAAATTGACGCGCCGGAAT+CGG | - | chr8_2:13414413-13414432 | None:intergenic | 50.0% | |
| AAGGAGGAGGAGAAGGAGAA+TGG | - | chr8_2:13414463-13414482 | None:intergenic | 50.0% | |
| AGAAGAGGAAGAGAAGGAGG+AGG | - | chr8_2:13414476-13414495 | None:intergenic | 50.0% | |
| GATTGGGGACTGAGAAGAAG+AGG | - | chr8_2:13414491-13414510 | None:intergenic | 50.0% | |
| CATTCGATCGGAGATGGAGT+CGG | - | chr8_2:13414544-13414563 | None:intergenic | 50.0% | |
| ! | GTTGTTGTTGTTGGCGCAAG+AGG | - | chr8_2:13414593-13414612 | None:intergenic | 50.0% |
| !! | GAAGTTGGATGGGTTGGGTT+TGG | + | chr8_2:13415178-13415197 | Msa1235410:CDS | 50.0% |
| TCATCCTCCCAAACAGCCTT+AGG | - | chr8_2:13415215-13415234 | None:intergenic | 50.0% | |
| TAAGGCTGTTTGGGAGGATG+AGG | + | chr8_2:13415214-13415233 | Msa1235410:CDS | 50.0% | |
| TTTGGGAGGATGAGGATACG+AGG | + | chr8_2:13415222-13415241 | Msa1235410:CDS | 50.0% | |
| TGATGAGCAATTGGTCCACC+CGG | - | chr8_2:13415362-13415381 | None:intergenic | 50.0% | |
| GGGATGGGGAAAAAGCAACT+TGG | - | chr8_2:13416014-13416033 | None:intergenic | 50.0% | |
| ! | AATCTGCTGCTTGAGGGATG+GGG | - | chr8_2:13416028-13416047 | None:intergenic | 50.0% |
| ! | CAATCTGCTGCTTGAGGGAT+GGG | - | chr8_2:13416029-13416048 | None:intergenic | 50.0% |
| GCATCTTGAGGGTGATTGAG+AGG | + | chr8_2:13416048-13416067 | Msa1235410:CDS | 50.0% | |
| CACTTGTAATTCGGCCAGCT+CGG | + | chr8_2:13416165-13416184 | Msa1235410:CDS | 50.0% | |
| AAGCTTGTGACCTTGCGCTA+AGG | + | chr8_2:13416478-13416497 | Msa1235410:intron | 50.0% | |
| ! | CCCCCTTTTTCCCCTTGAAA+AGG | + | chr8_2:13416623-13416642 | Msa1235410:intron | 50.0% |
| !! | GGGCCTTTTCAAGGGGAAAA+AGG | - | chr8_2:13416629-13416648 | None:intergenic | 50.0% |
| TCTAAGCCTTGAAGCGGGAT+TGG | + | chr8_2:13416782-13416801 | Msa1235410:intron | 50.0% | |
| !! | GAAAGGAGAGTGCTCCTTTG+GGG | - | chr8_2:13416920-13416939 | None:intergenic | 50.0% |
| !! | GTGAAAGGAGAGTGCTCCTT+TGG | - | chr8_2:13416922-13416941 | None:intergenic | 50.0% |
| ATCTTCCCCTCTACCATTCG+AGG | + | chr8_2:13416984-13417003 | Msa1235410:intron | 50.0% | |
| TCTTCCCCTCTACCATTCGA+GGG | + | chr8_2:13416985-13417004 | Msa1235410:intron | 50.0% | |
| GCCATGTCTAGCGTGTTCAT+TGG | + | chr8_2:13417526-13417545 | Msa1235410:CDS | 50.0% | |
| AGACATCTTGCGGCTGAGAA+AGG | + | chr8_2:13417573-13417592 | Msa1235410:CDS | 50.0% | |
| !! | GTTTTCTTGTGCCGTTGCTC+AGG | + | chr8_2:13417691-13417710 | Msa1235410:three_prime_UTR | 50.0% |
| AAGTGTCTGGTCCTGAGCAA+CGG | - | chr8_2:13417705-13417724 | None:intergenic | 50.0% | |
| CAATCAAACCTATGGCAGGG+CGG | - | chr8_2:13417730-13417749 | None:intergenic | 50.0% | |
| CGGTTGGAGAGAGTGAGTGA+GGG | - | chr8_2:13414195-13414214 | None:intergenic | 55.0% | |
| TCGGTTGGAGAGAGTGAGTG+AGG | - | chr8_2:13414196-13414215 | None:intergenic | 55.0% | |
| TATAGGTGAGTGAGCCACGG+CGG | - | chr8_2:13414280-13414299 | None:intergenic | 55.0% | |
| TCGTCGGAGGAGGAATCCAT+TGG | - | chr8_2:13414303-13414322 | None:intergenic | 55.0% | |
| ! | GTTGGTGGATGAGGTTGTGG+TGG | - | chr8_2:13414335-13414354 | None:intergenic | 55.0% |
| !! | AGGGTTGGTGGATGAGGTTG+TGG | - | chr8_2:13414338-13414357 | None:intergenic | 55.0% |
| !! | TTGTGGAGGGTTGGTGGATG+AGG | - | chr8_2:13414344-13414363 | None:intergenic | 55.0% |
| !! | TTCGGGGTTTTGTGGAGGGT+TGG | - | chr8_2:13414353-13414372 | None:intergenic | 55.0% |
| !! | GGTGTTCGGGGTTTTGTGGA+GGG | - | chr8_2:13414357-13414376 | None:intergenic | 55.0% |
| !! | AGGTGTTCGGGGTTTTGTGG+AGG | - | chr8_2:13414358-13414377 | None:intergenic | 55.0% |
| TCGACGTGGAATGTAGAGGG+AGG | - | chr8_2:13414378-13414397 | None:intergenic | 55.0% | |
| GAAATTGACGCGCCGGAATC+GGG | - | chr8_2:13414412-13414431 | None:intergenic | 55.0% | |
| GGAAGGTGAAATTGACGCGC+CGG | - | chr8_2:13414419-13414438 | None:intergenic | 55.0% | |
| GGAAGAGAAGGAGGAGGAGA+AGG | - | chr8_2:13414470-13414489 | None:intergenic | 55.0% | |
| TGAAGTAGCGGCGGAGATTG+GGG | - | chr8_2:13414506-13414525 | None:intergenic | 55.0% | |
| GTGAAGTAGCGGCGGAGATT+GGG | - | chr8_2:13414507-13414526 | None:intergenic | 55.0% | |
| ATGAGGTGGTGAAGTAGCGG+CGG | - | chr8_2:13414515-13414534 | None:intergenic | 55.0% | |
| GATGGAGTCGGAGGTGAATG+AGG | - | chr8_2:13414532-13414551 | None:intergenic | 55.0% | |
| !! | GAATGGGTTATGCAACCGGG+TGG | + | chr8_2:13415344-13415363 | Msa1235410:CDS | 55.0% |
| ! | GCAATCTGCTGCTTGAGGGA+TGG | - | chr8_2:13416030-13416049 | None:intergenic | 55.0% |
| CGAGCTGGCCGAATTACAAG+TGG | - | chr8_2:13416167-13416186 | None:intergenic | 55.0% | |
| AGAAGAGGAGCCTTAGCGCA+AGG | - | chr8_2:13416491-13416510 | None:intergenic | 55.0% | |
| CTGAAGCCAATCCCGCTTCA+AGG | - | chr8_2:13416791-13416810 | None:intergenic | 55.0% | |
| !! | TTGGGGTAGCCTTGTGTGGA+AGG | - | chr8_2:13416903-13416922 | None:intergenic | 55.0% |
| TCCACACAAGGCTACCCCAA+AGG | + | chr8_2:13416903-13416922 | Msa1235410:intron | 55.0% | |
| !! | TCCTTTGGGGTAGCCTTGTG+TGG | - | chr8_2:13416907-13416926 | None:intergenic | 55.0% |
| ! | AGCGTGTTCATTGGAGCACC+TGG | + | chr8_2:13417535-13417554 | Msa1235410:CDS | 55.0% |
| TCTTGCGGCTGAGAAAGGAC+TGG | + | chr8_2:13417578-13417597 | Msa1235410:CDS | 55.0% | |
| CTTGCGGCTGAGAAAGGACT+GGG | + | chr8_2:13417579-13417598 | Msa1235410:CDS | 55.0% | |
| TTGCGGCTGAGAAAGGACTG+GGG | + | chr8_2:13417580-13417599 | Msa1235410:CDS | 55.0% | |
| GTGGTGGTCGTCGTCTTCGT+CGG | - | chr8_2:13414319-13414338 | None:intergenic | 60.0% | |
| !! | GGGGTTTTGTGGAGGGTTGG+TGG | - | chr8_2:13414350-13414369 | None:intergenic | 60.0% |
| !!! | GGGAGGTGTTCGGGGTTTTG+TGG | - | chr8_2:13414361-13414380 | None:intergenic | 60.0% |
| GGTGAAGTAGCGGCGGAGAT+TGG | - | chr8_2:13414508-13414527 | None:intergenic | 60.0% | |
| GGAGTCGGAGGTGAATGAGG+TGG | - | chr8_2:13414529-13414548 | None:intergenic | 60.0% | |
| TCGATCGGAGATGGAGTCGG+AGG | - | chr8_2:13414541-13414560 | None:intergenic | 60.0% | |
| ACACTTGACCGCCCTGCCAT+AGG | + | chr8_2:13417719-13417738 | Msa1235410:three_prime_UTR | 60.0% | |
| GTCGTCGTCTTCGTCGGAGG+AGG | - | chr8_2:13414313-13414332 | None:intergenic | 65.0% | |
| GTGGTCGTCGTCTTCGTCGG+AGG | - | chr8_2:13414316-13414335 | None:intergenic | 65.0% | |
| !! | AGCGGGATTGGCTTCAGCCC+AGG | + | chr8_2:13416794-13416813 | Msa1235410:intron | 65.0% |
| TGGCAGGGCGGTCAAGTGTC+TGG | - | chr8_2:13417718-13417737 | None:intergenic | 65.0% | |
| ACGGCGGCGCGTGAGTGACA+CGG | - | chr8_2:13414264-13414283 | None:intergenic | 70.0% | |
| GCGGCGCGTGAGTGACACGG+TGG | - | chr8_2:13414261-13414280 | None:intergenic | 75.0% | |
| ! | GTGTCACTCACGCGCCGCCG+TGG | + | chr8_2:13414263-13414282 | Msa1235410:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 13414067 | 13417965 | 13414067 | ID=Msa1235410;Name=Msa1235410 |
| chr8_2 | mRNA | 13414067 | 13417965 | 13414067 | ID=Msa1235410-mRNA-1;Parent=Msa1235410;Name=Msa1235410-mRNA-1;_AED=0.04;_eAED=0.04;_QI=236|1|1|1|1|1|3|293|542 |
| chr8_2 | exon | 13414067 | 13415504 | 13414067 | ID=Msa1235410-mRNA-1:exon:5148;Parent=Msa1235410-mRNA-1 |
| chr8_2 | exon | 13415998 | 13416247 | 13415998 | ID=Msa1235410-mRNA-1:exon:5149;Parent=Msa1235410-mRNA-1 |
| chr8_2 | exon | 13417496 | 13417965 | 13417496 | ID=Msa1235410-mRNA-1:exon:5150;Parent=Msa1235410-mRNA-1 |
| chr8_2 | five_prime_UTR | 13414067 | 13414302 | 13414067 | ID=Msa1235410-mRNA-1:five_prime_utr;Parent=Msa1235410-mRNA-1 |
| chr8_2 | CDS | 13414303 | 13415504 | 13414303 | ID=Msa1235410-mRNA-1:cds;Parent=Msa1235410-mRNA-1 |
| chr8_2 | CDS | 13415998 | 13416247 | 13415998 | ID=Msa1235410-mRNA-1:cds;Parent=Msa1235410-mRNA-1 |
| chr8_2 | CDS | 13417496 | 13417672 | 13417496 | ID=Msa1235410-mRNA-1:cds;Parent=Msa1235410-mRNA-1 |
| chr8_2 | three_prime_UTR | 13417673 | 13417965 | 13417673 | ID=Msa1235410-mRNA-1:three_prime_utr;Parent=Msa1235410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
