Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646420 | AES89076.1 | 92.708 | 96 | 5 | 1 | 1 | 96 | 1 | 94 | 1.82e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0646420 | 0.844662 | 6.579352e-59 | -8.615850e-47 |
| Msa0037080 | Msa0646420 | 0.801515 | 8.681316e-49 | -8.615850e-47 |
| Msa0091730 | Msa0646420 | 0.853867 | 1.798388e-61 | -8.615850e-47 |
| Msa0092480 | Msa0646420 | -0.806802 | 6.890714e-50 | -8.615850e-47 |
| Msa0604290 | Msa0646420 | 0.810009 | 1.426056e-50 | -8.615850e-47 |
| Msa0610550 | Msa0646420 | 0.819924 | 8.996781e-53 | -8.615850e-47 |
| Msa0622790 | Msa0646420 | 0.801775 | 7.678286e-49 | -8.615850e-47 |
| Msa0626920 | Msa0646420 | 0.801867 | 7.352955e-49 | -8.615850e-47 |
| Msa0646020 | Msa0646420 | 0.989241 | 2.782495e-177 | -8.615850e-47 |
| Msa0646420 | Msa0662220 | 0.995953 | 1.025453e-221 | -8.615850e-47 |
| Msa0646420 | Msa0671210 | 0.804772 | 1.840077e-49 | -8.615850e-47 |
| Msa0646420 | Msa0686030 | 0.921040 | 5.954382e-88 | -8.615850e-47 |
| Msa0646420 | Msa0694140 | 0.815568 | 8.649059e-52 | -8.615850e-47 |
| Msa0646420 | Msa0776560 | 0.834230 | 3.379596e-56 | -8.615850e-47 |
| Msa0646420 | Msa0800480 | 0.804625 | 1.975105e-49 | -8.615850e-47 |
| Msa0646420 | Msa0878220 | 0.819401 | 1.184207e-52 | -8.615850e-47 |
| Msa0646420 | Msa0943970 | 0.813750 | 2.184912e-51 | -8.615850e-47 |
| Msa0646420 | Msa0944020 | 0.853122 | 2.944506e-61 | -8.615850e-47 |
| Msa0646420 | Msa0982190 | 0.803403 | 3.545452e-49 | -8.615850e-47 |
| Msa0646420 | Msa0992510 | 0.831818 | 1.345429e-55 | -8.615850e-47 |
| Msa0646420 | Msa1184230 | 0.842324 | 2.771526e-58 | -8.615850e-47 |
| Msa0646420 | Msa1190100 | -0.819658 | 1.034711e-52 | -8.615850e-47 |
| Msa0646420 | Msa1192140 | -0.801468 | 8.877641e-49 | -8.615850e-47 |
| Msa0646420 | Msa1196610 | -0.802028 | 6.811707e-49 | -8.615850e-47 |
| Msa0646420 | Msa1228040 | 0.822476 | 2.321658e-53 | -8.615850e-47 |
| Msa0646420 | Msa1258030 | -0.828281 | 9.808906e-55 | -8.615850e-47 |
| Msa0646420 | Msa1265520 | -0.804991 | 1.655863e-49 | -8.615850e-47 |
| Msa0646420 | Msa1271130 | 0.807488 | 4.933658e-50 | -8.615850e-47 |
| Msa0646420 | Msa1357560 | 0.844042 | 9.654711e-59 | -8.615850e-47 |
| Msa0646420 | Msa1364350 | -0.808098 | 3.658626e-50 | -8.615850e-47 |
| Msa0646420 | Msa1383630 | 0.801593 | 8.368953e-49 | -8.615850e-47 |
| Msa0646420 | Msa1392980 | 0.847393 | 1.189787e-59 | -8.615850e-47 |
| Msa0120880 | Msa0646420 | 0.804586 | 2.011653e-49 | -8.615850e-47 |
| Msa0122530 | Msa0646420 | 0.876325 | 1.527748e-68 | -8.615850e-47 |
| Msa0131270 | Msa0646420 | 0.811509 | 6.756249e-51 | -8.615850e-47 |
| Msa0163510 | Msa0646420 | 0.804122 | 2.513673e-49 | -8.615850e-47 |
| Msa0186540 | Msa0646420 | 0.843022 | 1.808718e-58 | -8.615850e-47 |
| Msa0194920 | Msa0646420 | 0.810247 | 1.267164e-50 | -8.615850e-47 |
| Msa0204960 | Msa0646420 | 0.828447 | 8.943485e-55 | -8.615850e-47 |
| Msa0215990 | Msa0646420 | 0.856282 | 3.574681e-62 | -8.615850e-47 |
| Msa0217670 | Msa0646420 | 0.843652 | 1.228317e-58 | -8.615850e-47 |
| Msa0237300 | Msa0646420 | 0.806096 | 9.711498e-50 | -8.615850e-47 |
| Msa0367540 | Msa0646420 | -0.816238 | 6.129974e-52 | -8.615850e-47 |
| Msa0374220 | Msa0646420 | 0.834771 | 2.472458e-56 | -8.615850e-47 |
| Msa0377820 | Msa0646420 | 0.823643 | 1.240141e-53 | -8.615850e-47 |
| Msa0385500 | Msa0646420 | 0.830891 | 2.274728e-55 | -8.615850e-47 |
| Msa0385740 | Msa0646420 | 0.836480 | 9.131069e-57 | -8.615850e-47 |
| Msa0426580 | Msa0646420 | 0.838769 | 2.362583e-57 | -8.615850e-47 |
| Msa0439960 | Msa0646420 | 0.818020 | 2.436706e-52 | -8.615850e-47 |
| Msa0469890 | Msa0646420 | 0.836189 | 1.082718e-56 | -8.615850e-47 |
| Msa0472930 | Msa0646420 | 0.822847 | 1.902622e-53 | -8.615850e-47 |
| Msa0256140 | Msa0646420 | 0.860538 | 1.926109e-63 | -8.615850e-47 |
| Msa0257490 | Msa0646420 | 0.803734 | 3.026470e-49 | -8.615850e-47 |
| Msa0259680 | Msa0646420 | 0.806375 | 8.479855e-50 | -8.615850e-47 |
| Msa0274720 | Msa0646420 | 0.813263 | 2.796701e-51 | -8.615850e-47 |
| Msa0296790 | Msa0646420 | 0.827348 | 1.644397e-54 | -8.615850e-47 |
| Msa0304730 | Msa0646420 | 0.809408 | 1.920026e-50 | -8.615850e-47 |
| Msa0315520 | Msa0646420 | 0.811749 | 5.992219e-51 | -8.615850e-47 |
| Msa0336450 | Msa0646420 | 0.818863 | 1.569800e-52 | -8.615850e-47 |
| Msa0336540 | Msa0646420 | 0.800831 | 1.198567e-48 | -8.615850e-47 |
| Msa0337710 | Msa0646420 | 0.802262 | 6.097240e-49 | -8.615850e-47 |
| Msa0341480 | Msa0646420 | 0.815458 | 9.148731e-52 | -8.615850e-47 |
| Msa0343500 | Msa0646420 | 0.803833 | 2.885846e-49 | -8.615850e-47 |
| Msa0515340 | Msa0646420 | 0.834725 | 2.538272e-56 | -8.615850e-47 |
| Msa0517590 | Msa0646420 | 0.825320 | 4.999490e-54 | -8.615850e-47 |
| Msa0527540 | Msa0646420 | 0.807755 | 4.329789e-50 | -8.615850e-47 |
| Msa0542560 | Msa0646420 | 0.810523 | 1.104829e-50 | -8.615850e-47 |
| Msa0549950 | Msa0646420 | 0.995898 | 4.207703e-221 | -8.615850e-47 |
| Msa0566940 | Msa0646420 | -0.813225 | 2.850641e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646420 | MtrunA17_Chr4g0034761 | 92.708 | 96 | 5 | 1 | 1 | 96 | 11 | 104 | 2.09e-61 | 182 |
| Msa0646420 | MtrunA17_Chr5g0446661 | 60.215 | 93 | 30 | 2 | 1 | 87 | 1 | 92 | 1.01e-25 | 91.7 |
| Msa0646420 | MtrunA17_Chr3g0078771 | 61.538 | 78 | 24 | 1 | 1 | 72 | 1 | 78 | 2.44e-22 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0646420 | AT1G49310.1 | 42.254 | 71 | 37 | 2 | 8 | 74 | 12 | 82 | 7.49e-13 | 58.9 |
Find 29 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTCTTCTTCTGCTTCT+TGG | 0.153872 | 4_3:-52192926 | None:intergenic |
| TTAATATCTTATATGTTATA+TGG | 0.245081 | 4_3:+52193016 | Msa0646420:three_prime_UTR |
| GAAAAGACTTGGGAGATTAT+TGG | 0.261061 | 4_3:+52192770 | Msa0646420:CDS |
| AATTAGATTTGTTAGTTTGA+TGG | 0.285742 | 4_3:-52192518 | None:intergenic |
| CTCCCCAGATGTATTGTGTT+TGG | 0.312718 | 4_3:+52193260 | Msa0646420:three_prime_UTR |
| ACAAGTTCTTTGATTGCTTC+AGG | 0.324229 | 4_3:-52192820 | None:intergenic |
| TTGTTGGCACCAGTTGAAAT+TGG | 0.331468 | 4_3:+52192426 | None:intergenic |
| AAATACATCTATAGATAAAA+AGG | 0.351346 | 4_3:-52193118 | None:intergenic |
| AACTCTGAACAAGAGCTTCA+TGG | 0.354626 | 4_3:+52192964 | Msa0646420:CDS |
| AATACCAAACACAATACATC+TGG | 0.373946 | 4_3:-52193264 | None:intergenic |
| GATACATCAATCAAATCTAT+TGG | 0.418852 | 4_3:-52193196 | None:intergenic |
| CTCTTATGCAAGAAAAGACT+TGG | 0.442343 | 4_3:+52192759 | Msa0646420:CDS |
| GAGTATGAGAGAAGCAAAGA+TGG | 0.451907 | 4_3:-52192575 | None:intergenic |
| GATTTGTTAGTTTGATGGCT+AGG | 0.457950 | 4_3:-52192513 | None:intergenic |
| TCTTTGATTGCTTCAGGCAT+AGG | 0.472850 | 4_3:-52192814 | None:intergenic |
| ACGGTTGTACCAATTTCAAC+TGG | 0.472939 | 4_3:-52192435 | None:intergenic |
| AGTCAAAAGACAGTGAAACT+TGG | 0.478801 | 4_3:+52193294 | Msa0646420:three_prime_UTR |
| GTGTGATATAATATGACATT+AGG | 0.480243 | 4_3:-52192892 | None:intergenic |
| TGATTGCTTCAGGCATAGGT+TGG | 0.514568 | 4_3:-52192810 | None:intergenic |
| TGGTACAACCGTGTATAAAG+TGG | 0.539054 | 4_3:+52192446 | Msa0646420:five_prime_UTR |
| AGAACTTGTTCAAAATCAAG+AGG | 0.539159 | 4_3:+52192834 | Msa0646420:CDS |
| TTTGATTGATGTATCTAGTG+TGG | 0.552142 | 4_3:+52193204 | Msa0646420:three_prime_UTR |
| ATACCAAACACAATACATCT+GGG | 0.600413 | 4_3:-52193263 | None:intergenic |
| AAAAGACAGTGAAACTTGGA+TGG | 0.605833 | 4_3:+52193298 | Msa0646420:three_prime_UTR |
| TCTTATGCAAGAAAAGACTT+GGG | 0.611202 | 4_3:+52192760 | Msa0646420:CDS |
| TAAAAGTCCACATCTTAGCA+AGG | 0.615141 | 4_3:+52192540 | Msa0646420:five_prime_UTR |
| GGTACAACCGTGTATAAAGT+GGG | 0.640534 | 4_3:+52192447 | Msa0646420:five_prime_UTR |
| AAAGGGGCCCACTTTATACA+CGG | 0.655601 | 4_3:-52192454 | None:intergenic |
| TACCAAACACAATACATCTG+GGG | 0.678240 | 4_3:-52193262 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATCTTATATGTTATA+TGG | + | chr4_3:52193016-52193035 | Msa0646420:three_prime_UTR | 10.0% |
| !! | TTAATATCTTATATGTTATA+TGG | + | chr4_3:52193016-52193035 | Msa0646420:three_prime_UTR | 10.0% |
| !! | ACAATATAGTATAAATTGAT+TGG | - | chr4_3:52192694-52192713 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTGTACTAAAAT+AGG | + | chr4_3:52192726-52192745 | Msa0646420:intron | 15.0% |
| !!! | TATTTAAGGTTTATTTTGTA+GGG | + | chr4_3:52193051-52193070 | Msa0646420:three_prime_UTR | 15.0% |
| !! | AAATACATCTATAGATAAAA+AGG | - | chr4_3:52193121-52193140 | None:intergenic | 15.0% |
| !!! | TATCTATAGATGTATTTTTA+TGG | + | chr4_3:52193124-52193143 | Msa0646420:three_prime_UTR | 15.0% |
| !! | ACAATATAGTATAAATTGAT+TGG | - | chr4_3:52192694-52192713 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTGTACTAAAAT+AGG | + | chr4_3:52192726-52192745 | Msa0646420:intron | 15.0% |
| !!! | TATTTAAGGTTTATTTTGTA+GGG | + | chr4_3:52193051-52193070 | Msa0646420:three_prime_UTR | 15.0% |
| !! | AAATACATCTATAGATAAAA+AGG | - | chr4_3:52193121-52193140 | None:intergenic | 15.0% |
| !!! | TATCTATAGATGTATTTTTA+TGG | + | chr4_3:52193124-52193143 | Msa0646420:three_prime_UTR | 15.0% |
| !!! | AATTAGATTTGTTAGTTTGA+TGG | - | chr4_3:52192521-52192540 | None:intergenic | 20.0% |
| !! | TTAGTACAAAGAAAATTGAA+AGG | - | chr4_3:52192723-52192742 | None:intergenic | 20.0% |
| !! | GGAAAAAAGATTAGTATTTA+AGG | + | chr4_3:52193037-52193056 | Msa0646420:three_prime_UTR | 20.0% |
| !!! | GTATTTAAGGTTTATTTTGT+AGG | + | chr4_3:52193050-52193069 | Msa0646420:three_prime_UTR | 20.0% |
| !!! | TAAAGTTGTATTTTTGTTGA+TGG | + | chr4_3:52193089-52193108 | Msa0646420:three_prime_UTR | 20.0% |
| !!! | AATTAGATTTGTTAGTTTGA+TGG | - | chr4_3:52192521-52192540 | None:intergenic | 20.0% |
| !! | TTAGTACAAAGAAAATTGAA+AGG | - | chr4_3:52192723-52192742 | None:intergenic | 20.0% |
| !! | GGAAAAAAGATTAGTATTTA+AGG | + | chr4_3:52193037-52193056 | Msa0646420:three_prime_UTR | 20.0% |
| !!! | GTATTTAAGGTTTATTTTGT+AGG | + | chr4_3:52193050-52193069 | Msa0646420:three_prime_UTR | 20.0% |
| !!! | TAAAGTTGTATTTTTGTTGA+TGG | + | chr4_3:52193089-52193108 | Msa0646420:three_prime_UTR | 20.0% |
| !! | TTCTTTTTATAGGCCAAAAA+GGG | - | chr4_3:52192474-52192493 | None:intergenic | 25.0% |
| !! | TTTCTTTTTATAGGCCAAAA+AGG | - | chr4_3:52192475-52192494 | None:intergenic | 25.0% |
| !!! | CTCTGACTATTTCTTTTTAT+AGG | - | chr4_3:52192484-52192503 | None:intergenic | 25.0% |
| ! | CTATAAAAAGAAATAGTCAG+AGG | + | chr4_3:52192482-52192501 | Msa0646420:five_prime_UTR | 25.0% |
| ! | GTGTGATATAATATGACATT+AGG | - | chr4_3:52192895-52192914 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTGCATCTATTTT+TGG | + | chr4_3:52193155-52193174 | Msa0646420:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTGCATCTATTTTT+GGG | + | chr4_3:52193156-52193175 | Msa0646420:three_prime_UTR | 25.0% |
| ! | GATACATCAATCAAATCTAT+TGG | - | chr4_3:52193199-52193218 | None:intergenic | 25.0% |
| !! | TTCTTTTTATAGGCCAAAAA+GGG | - | chr4_3:52192474-52192493 | None:intergenic | 25.0% |
| !! | TTTCTTTTTATAGGCCAAAA+AGG | - | chr4_3:52192475-52192494 | None:intergenic | 25.0% |
| !!! | CTCTGACTATTTCTTTTTAT+AGG | - | chr4_3:52192484-52192503 | None:intergenic | 25.0% |
| ! | CTATAAAAAGAAATAGTCAG+AGG | + | chr4_3:52192482-52192501 | Msa0646420:five_prime_UTR | 25.0% |
| ! | GTGTGATATAATATGACATT+AGG | - | chr4_3:52192895-52192914 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTGCATCTATTTT+TGG | + | chr4_3:52193155-52193174 | Msa0646420:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTGCATCTATTTTT+GGG | + | chr4_3:52193156-52193175 | Msa0646420:three_prime_UTR | 25.0% |
| ! | GATACATCAATCAAATCTAT+TGG | - | chr4_3:52193199-52193218 | None:intergenic | 25.0% |
| ! | TCTTTTTATAGGCCAAAAAG+GGG | - | chr4_3:52192473-52192492 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCTTGCTAAGATG+TGG | - | chr4_3:52192550-52192569 | None:intergenic | 30.0% |
| TCTTATGCAAGAAAAGACTT+GGG | + | chr4_3:52192760-52192779 | Msa0646420:CDS | 30.0% | |
| ! | AGAACTTGTTCAAAATCAAG+AGG | + | chr4_3:52192834-52192853 | Msa0646420:CDS | 30.0% |
| CTTCATGGAACATAAAAACA+TGG | + | chr4_3:52192979-52192998 | Msa0646420:exon | 30.0% | |
| ATGGAACATAAAAACATGGT+TGG | + | chr4_3:52192983-52193002 | Msa0646420:exon | 30.0% | |
| TTTGATTGATGTATCTAGTG+TGG | + | chr4_3:52193204-52193223 | Msa0646420:three_prime_UTR | 30.0% | |
| ATACCAAACACAATACATCT+GGG | - | chr4_3:52193266-52193285 | None:intergenic | 30.0% | |
| AATACCAAACACAATACATC+TGG | - | chr4_3:52193267-52193286 | None:intergenic | 30.0% | |
| ! | TCTTTTTATAGGCCAAAAAG+GGG | - | chr4_3:52192473-52192492 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCTTGCTAAGATG+TGG | - | chr4_3:52192550-52192569 | None:intergenic | 30.0% |
| TCTTATGCAAGAAAAGACTT+GGG | + | chr4_3:52192760-52192779 | Msa0646420:CDS | 30.0% | |
| ! | AGAACTTGTTCAAAATCAAG+AGG | + | chr4_3:52192834-52192853 | Msa0646420:CDS | 30.0% |
| CTTCATGGAACATAAAAACA+TGG | + | chr4_3:52192979-52192998 | Msa0646420:exon | 30.0% | |
| ATGGAACATAAAAACATGGT+TGG | + | chr4_3:52192983-52193002 | Msa0646420:exon | 30.0% | |
| TTTGATTGATGTATCTAGTG+TGG | + | chr4_3:52193204-52193223 | Msa0646420:three_prime_UTR | 30.0% | |
| ATACCAAACACAATACATCT+GGG | - | chr4_3:52193266-52193285 | None:intergenic | 30.0% | |
| AATACCAAACACAATACATC+TGG | - | chr4_3:52193267-52193286 | None:intergenic | 30.0% | |
| !! | GATTTGTTAGTTTGATGGCT+AGG | - | chr4_3:52192516-52192535 | None:intergenic | 35.0% |
| TAAAAGTCCACATCTTAGCA+AGG | + | chr4_3:52192540-52192559 | Msa0646420:five_prime_UTR | 35.0% | |
| ! | CATACTCTTTTCTCTTCTTC+TGG | + | chr4_3:52192591-52192610 | Msa0646420:CDS | 35.0% |
| ! | AGTCTTTTCTTGCATAAGAG+AGG | - | chr4_3:52192759-52192778 | None:intergenic | 35.0% |
| CTCTTATGCAAGAAAAGACT+TGG | + | chr4_3:52192759-52192778 | Msa0646420:CDS | 35.0% | |
| GAAAAGACTTGGGAGATTAT+TGG | + | chr4_3:52192770-52192789 | Msa0646420:CDS | 35.0% | |
| ACAAGTTCTTTGATTGCTTC+AGG | - | chr4_3:52192823-52192842 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTCTTCTGCTTCT+TGG | - | chr4_3:52192929-52192948 | None:intergenic | 35.0% |
| TACCAAACACAATACATCTG+GGG | - | chr4_3:52193265-52193284 | None:intergenic | 35.0% | |
| AGTCAAAAGACAGTGAAACT+TGG | + | chr4_3:52193294-52193313 | Msa0646420:three_prime_UTR | 35.0% | |
| AAAAGACAGTGAAACTTGGA+TGG | + | chr4_3:52193298-52193317 | Msa0646420:three_prime_UTR | 35.0% | |
| GAAACTTGGATGGTATTTGA+TGG | + | chr4_3:52193308-52193327 | Msa0646420:three_prime_UTR | 35.0% | |
| !! | GATTTGTTAGTTTGATGGCT+AGG | - | chr4_3:52192516-52192535 | None:intergenic | 35.0% |
| TAAAAGTCCACATCTTAGCA+AGG | + | chr4_3:52192540-52192559 | Msa0646420:five_prime_UTR | 35.0% | |
| ! | CATACTCTTTTCTCTTCTTC+TGG | + | chr4_3:52192591-52192610 | Msa0646420:CDS | 35.0% |
| ! | AGTCTTTTCTTGCATAAGAG+AGG | - | chr4_3:52192759-52192778 | None:intergenic | 35.0% |
| CTCTTATGCAAGAAAAGACT+TGG | + | chr4_3:52192759-52192778 | Msa0646420:CDS | 35.0% | |
| GAAAAGACTTGGGAGATTAT+TGG | + | chr4_3:52192770-52192789 | Msa0646420:CDS | 35.0% | |
| ACAAGTTCTTTGATTGCTTC+AGG | - | chr4_3:52192823-52192842 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTCTTCTGCTTCT+TGG | - | chr4_3:52192929-52192948 | None:intergenic | 35.0% |
| TACCAAACACAATACATCTG+GGG | - | chr4_3:52193265-52193284 | None:intergenic | 35.0% | |
| AGTCAAAAGACAGTGAAACT+TGG | + | chr4_3:52193294-52193313 | Msa0646420:three_prime_UTR | 35.0% | |
| AAAAGACAGTGAAACTTGGA+TGG | + | chr4_3:52193298-52193317 | Msa0646420:three_prime_UTR | 35.0% | |
| TGGTACAACCGTGTATAAAG+TGG | + | chr4_3:52192446-52192465 | Msa0646420:five_prime_UTR | 40.0% | |
| GGTACAACCGTGTATAAAGT+GGG | + | chr4_3:52192447-52192466 | Msa0646420:five_prime_UTR | 40.0% | |
| GAGTATGAGAGAAGCAAAGA+TGG | - | chr4_3:52192578-52192597 | None:intergenic | 40.0% | |
| TCTTTGATTGCTTCAGGCAT+AGG | - | chr4_3:52192817-52192836 | None:intergenic | 40.0% | |
| AACTCTGAACAAGAGCTTCA+TGG | + | chr4_3:52192964-52192983 | Msa0646420:CDS | 40.0% | |
| TGGTACAACCGTGTATAAAG+TGG | + | chr4_3:52192446-52192465 | Msa0646420:five_prime_UTR | 40.0% | |
| GGTACAACCGTGTATAAAGT+GGG | + | chr4_3:52192447-52192466 | Msa0646420:five_prime_UTR | 40.0% | |
| GAGTATGAGAGAAGCAAAGA+TGG | - | chr4_3:52192578-52192597 | None:intergenic | 40.0% | |
| TCTTTGATTGCTTCAGGCAT+AGG | - | chr4_3:52192817-52192836 | None:intergenic | 40.0% | |
| AACTCTGAACAAGAGCTTCA+TGG | + | chr4_3:52192964-52192983 | Msa0646420:CDS | 40.0% | |
| AAAGGGGCCCACTTTATACA+CGG | - | chr4_3:52192457-52192476 | None:intergenic | 45.0% | |
| ! | GTATAAAGTGGGCCCCTTTT+TGG | + | chr4_3:52192458-52192477 | Msa0646420:five_prime_UTR | 45.0% |
| TGATTGCTTCAGGCATAGGT+TGG | - | chr4_3:52192813-52192832 | None:intergenic | 45.0% | |
| CTCCCCAGATGTATTGTGTT+TGG | + | chr4_3:52193260-52193279 | Msa0646420:three_prime_UTR | 45.0% | |
| AAAGGGGCCCACTTTATACA+CGG | - | chr4_3:52192457-52192476 | None:intergenic | 45.0% | |
| ! | GTATAAAGTGGGCCCCTTTT+TGG | + | chr4_3:52192458-52192477 | Msa0646420:five_prime_UTR | 45.0% |
| TGATTGCTTCAGGCATAGGT+TGG | - | chr4_3:52192813-52192832 | None:intergenic | 45.0% | |
| CTCCCCAGATGTATTGTGTT+TGG | + | chr4_3:52193260-52193279 | Msa0646420:three_prime_UTR | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 52192438 | 52193329 | 52192438 | ID=Msa0646420;Name=Msa0646420 |
| chr4_3 | mRNA | 52192438 | 52193329 | 52192438 | ID=Msa0646420-mRNA-1;Parent=Msa0646420;Name=Msa0646420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|1|1|1|1|1|2|336|96 |
| chr4_3 | exon | 52192438 | 52192612 | 52192438 | ID=Msa0646420-mRNA-1:exon:12770;Parent=Msa0646420-mRNA-1 |
| chr4_3 | exon | 52192748 | 52193329 | 52192748 | ID=Msa0646420-mRNA-1:exon:12771;Parent=Msa0646420-mRNA-1 |
| chr4_3 | five_prime_UTR | 52192438 | 52192567 | 52192438 | ID=Msa0646420-mRNA-1:five_prime_utr;Parent=Msa0646420-mRNA-1 |
| chr4_3 | CDS | 52192568 | 52192612 | 52192568 | ID=Msa0646420-mRNA-1:cds;Parent=Msa0646420-mRNA-1 |
| chr4_3 | CDS | 52192748 | 52192993 | 52192748 | ID=Msa0646420-mRNA-1:cds;Parent=Msa0646420-mRNA-1 |
| chr4_3 | three_prime_UTR | 52192994 | 52193329 | 52192994 | ID=Msa0646420-mRNA-1:three_prime_utr;Parent=Msa0646420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
